2025-09-12T02:47:38,135 Created temporary directory: /tmp/pip-build-tracker-v2rsxcyv 2025-09-12T02:47:38,136 Initialized build tracking at /tmp/pip-build-tracker-v2rsxcyv 2025-09-12T02:47:38,136 Created build tracker: /tmp/pip-build-tracker-v2rsxcyv 2025-09-12T02:47:38,136 Entered build tracker: /tmp/pip-build-tracker-v2rsxcyv 2025-09-12T02:47:38,136 Created temporary directory: /tmp/pip-wheel-63w90nn9 2025-09-12T02:47:38,139 Created temporary directory: /tmp/pip-ephem-wheel-cache-omiakvlf 2025-09-12T02:47:38,194 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-12T02:47:38,197 2 location(s) to search for versions of scipion-em-susantomo: 2025-09-12T02:47:38,197 * https://pypi.org/simple/scipion-em-susantomo/ 2025-09-12T02:47:38,197 * https://www.piwheels.org/simple/scipion-em-susantomo/ 2025-09-12T02:47:38,197 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-susantomo/ 2025-09-12T02:47:38,197 Getting page https://pypi.org/simple/scipion-em-susantomo/ 2025-09-12T02:47:38,198 Found index url https://pypi.org/simple/ 2025-09-12T02:47:38,269 Fetched page https://pypi.org/simple/scipion-em-susantomo/ as application/vnd.pypi.simple.v1+json 2025-09-12T02:47:38,270 Found link https://files.pythonhosted.org/packages/70/63/ce3557fb45577053c998480fc5abc4b4e44eef9cf5c3328e4920a5a8bf2b/scipion-em-susantomo-3.0b1.tar.gz (from https://pypi.org/simple/scipion-em-susantomo/), version: 3.0b1 2025-09-12T02:47:38,271 Found link https://files.pythonhosted.org/packages/10/b9/7182c3c4fa01234a3d6f5c8faee08059dbe158c419c47a735e318edecb03/scipion-em-susantomo-3.0b2.tar.gz (from https://pypi.org/simple/scipion-em-susantomo/), version: 3.0b2 2025-09-12T02:47:38,271 Skipping link: No binaries permitted for scipion-em-susantomo: https://files.pythonhosted.org/packages/31/99/12a4ad559e1df8a1ad963719d6fcc30057852db5f79d2225caf1f36b85bd/scipion_em_susantomo-3.0b2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-susantomo/) 2025-09-12T02:47:38,271 Found link https://files.pythonhosted.org/packages/91/d8/f635600a03f911adf7d9522fb80b49dd1d5170f5d80566b3a1b42eec93ad/scipion-em-susantomo-3.0b3.tar.gz (from https://pypi.org/simple/scipion-em-susantomo/), version: 3.0b3 2025-09-12T02:47:38,271 Skipping link: No binaries permitted for scipion-em-susantomo: https://files.pythonhosted.org/packages/f7/be/84110d3a2e0365680e7c74f12f0079830988c4d9f01d5c0eb63d4e84deee/scipion_em_susantomo-3.0b3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-susantomo/) 2025-09-12T02:47:38,272 Found link https://files.pythonhosted.org/packages/2c/fb/e1f8beca16e64c564cbb9a0f76665f70376c75a4c4fee79a295736f7f8e8/scipion-em-susantomo-3.0b4.tar.gz (from https://pypi.org/simple/scipion-em-susantomo/), version: 3.0b4 2025-09-12T02:47:38,272 Skipping link: No binaries permitted for scipion-em-susantomo: https://files.pythonhosted.org/packages/70/38/8b34293fccf00286a82326a8227b9f7a989cbdbce0f4c7d708b32bf36fff/scipion_em_susantomo-3.0b4-py3-none-any.whl (from https://pypi.org/simple/scipion-em-susantomo/) 2025-09-12T02:47:38,272 Skipping link: No binaries permitted for scipion-em-susantomo: https://files.pythonhosted.org/packages/2a/81/4a7c14e835d700074b31e697d0e715b0efdf620d2c8fe08b6384fcba1f53/scipion_em_susantomo-3.0b5-py3-none-any.whl (from https://pypi.org/simple/scipion-em-susantomo/) (requires-python:>=3.8) 2025-09-12T02:47:38,273 Found link https://files.pythonhosted.org/packages/2a/c0/6fd2cb2b64e9b3804287fb4d9e15f3329dbf9398e2d14276e151d0241e54/scipion_em_susantomo-3.0b5.tar.gz (from https://pypi.org/simple/scipion-em-susantomo/) (requires-python:>=3.8), version: 3.0b5 2025-09-12T02:47:38,273 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-susantomo/ 2025-09-12T02:47:38,273 Getting page https://www.piwheels.org/simple/scipion-em-susantomo/ 2025-09-12T02:47:38,274 Found index url https://www.piwheels.org/simple/ 2025-09-12T02:47:38,377 Fetched page https://www.piwheels.org/simple/scipion-em-susantomo/ as text/html 2025-09-12T02:47:38,378 Skipping link: No binaries permitted for scipion-em-susantomo: https://archive1.piwheels.org/simple/scipion-em-susantomo/scipion_em_susantomo-3.0b5-py3-none-any.whl#sha256=622e4a499ec5a3c95135c2761d52a0998b48ff9c896f63fb63717629cd2d14ea (from https://www.piwheels.org/simple/scipion-em-susantomo/) (requires-python:>=3.8) 2025-09-12T02:47:38,378 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-susantomo/ 2025-09-12T02:47:38,379 Skipping link: not a file: https://pypi.org/simple/scipion-em-susantomo/ 2025-09-12T02:47:38,404 Given no hashes to check 1 links for project 'scipion-em-susantomo': discarding no candidates 2025-09-12T02:47:38,405 Collecting scipion-em-susantomo==3.0b3 2025-09-12T02:47:38,407 Created temporary directory: /tmp/pip-unpack-ukfl69g3 2025-09-12T02:47:38,546 Downloading scipion-em-susantomo-3.0b3.tar.gz (41 kB) 2025-09-12T02:47:38,603 Added scipion-em-susantomo==3.0b3 from https://files.pythonhosted.org/packages/91/d8/f635600a03f911adf7d9522fb80b49dd1d5170f5d80566b3a1b42eec93ad/scipion-em-susantomo-3.0b3.tar.gz to build tracker '/tmp/pip-build-tracker-v2rsxcyv' 2025-09-12T02:47:38,604 Running setup.py (path:/tmp/pip-wheel-63w90nn9/scipion-em-susantomo_e9573816b5d243be834672f93ecb3111/setup.py) egg_info for package scipion-em-susantomo 2025-09-12T02:47:38,604 Created temporary directory: /tmp/pip-pip-egg-info-q7kdfwhe 2025-09-12T02:47:38,605 Preparing metadata (setup.py): started 2025-09-12T02:47:38,605 Running command python setup.py egg_info 2025-09-12T02:47:39,123 Traceback (most recent call last): 2025-09-12T02:47:39,124 File "", line 2, in 2025-09-12T02:47:39,124 exec(compile(''' 2025-09-12T02:47:39,124 ~~~~^^^^^^^^^^^^ 2025-09-12T02:47:39,125 # This is -- a caller that pip uses to run setup.py 2025-09-12T02:47:39,125 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T02:47:39,125 ...<32 lines>... 2025-09-12T02:47:39,125 exec(compile(setup_py_code, filename, "exec")) 2025-09-12T02:47:39,125 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T02:47:39,125 ''' % ('/tmp/pip-wheel-63w90nn9/scipion-em-susantomo_e9573816b5d243be834672f93ecb3111/setup.py',), "", "exec")) 2025-09-12T02:47:39,125 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T02:47:39,125 File "", line 35, in 2025-09-12T02:47:39,126 File "/tmp/pip-wheel-63w90nn9/scipion-em-susantomo_e9573816b5d243be834672f93ecb3111/setup.py", line 39, in 2025-09-12T02:47:39,126 from susantomo import __version__ 2025-09-12T02:47:39,126 File "/tmp/pip-wheel-63w90nn9/scipion-em-susantomo_e9573816b5d243be834672f93ecb3111/susantomo/__init__.py", line 29, in 2025-09-12T02:47:39,126 import pwem 2025-09-12T02:47:39,126 ModuleNotFoundError: No module named 'pwem' 2025-09-12T02:47:39,210 ERROR: python setup.py egg_info exited with 1 2025-09-12T02:47:39,221 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-12T02:47:39,221 exec(compile('"'"''"'"''"'"' 2025-09-12T02:47:39,221 # This is -- a caller that pip uses to run setup.py 2025-09-12T02:47:39,221 # 2025-09-12T02:47:39,221 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-12T02:47:39,221 # import from `distutils.core` to work with newer packaging standards. 2025-09-12T02:47:39,221 # - It provides a clear error message when setuptools is not installed. 2025-09-12T02:47:39,221 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-12T02:47:39,221 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-12T02:47:39,221 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-12T02:47:39,221 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-12T02:47:39,221 import os, sys, tokenize, traceback 2025-09-12T02:47:39,221 2025-09-12T02:47:39,221 try: 2025-09-12T02:47:39,221 import setuptools 2025-09-12T02:47:39,221 except ImportError: 2025-09-12T02:47:39,221 print( 2025-09-12T02:47:39,221 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-12T02:47:39,221 "the build environment with exception:", 2025-09-12T02:47:39,221 file=sys.stderr, 2025-09-12T02:47:39,221 ) 2025-09-12T02:47:39,221 traceback.print_exc() 2025-09-12T02:47:39,221 sys.exit(1) 2025-09-12T02:47:39,221 2025-09-12T02:47:39,221 __file__ = %r 2025-09-12T02:47:39,221 sys.argv[0] = __file__ 2025-09-12T02:47:39,221 2025-09-12T02:47:39,221 if os.path.exists(__file__): 2025-09-12T02:47:39,221 filename = __file__ 2025-09-12T02:47:39,221 with tokenize.open(__file__) as f: 2025-09-12T02:47:39,221 setup_py_code = f.read() 2025-09-12T02:47:39,221 else: 2025-09-12T02:47:39,221 filename = "" 2025-09-12T02:47:39,221 setup_py_code = "from setuptools import setup; setup()" 2025-09-12T02:47:39,221 2025-09-12T02:47:39,221 exec(compile(setup_py_code, filename, "exec")) 2025-09-12T02:47:39,221 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-63w90nn9/scipion-em-susantomo_e9573816b5d243be834672f93ecb3111/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-q7kdfwhe[/] 2025-09-12T02:47:39,222 [bold magenta]cwd[/]: /tmp/pip-wheel-63w90nn9/scipion-em-susantomo_e9573816b5d243be834672f93ecb3111/ 2025-09-12T02:47:39,222 Preparing metadata (setup.py): finished with status 'error' 2025-09-12T02:47:39,223 ERROR: metadata generation failed 2025-09-12T02:47:39,228 Exception information: 2025-09-12T02:47:39,228 Traceback (most recent call last): 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-12T02:47:39,228 call_subprocess( 2025-09-12T02:47:39,228 ~~~~~~~~~~~~~~~^ 2025-09-12T02:47:39,228 args, 2025-09-12T02:47:39,228 ^^^^^ 2025-09-12T02:47:39,228 ...<2 lines>... 2025-09-12T02:47:39,228 spinner=spinner, 2025-09-12T02:47:39,228 ^^^^^^^^^^^^^^^^ 2025-09-12T02:47:39,228 ) 2025-09-12T02:47:39,228 ^ 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-12T02:47:39,228 raise error 2025-09-12T02:47:39,228 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-12T02:47:39,228 2025-09-12T02:47:39,228 The above exception was the direct cause of the following exception: 2025-09-12T02:47:39,228 2025-09-12T02:47:39,228 Traceback (most recent call last): 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-12T02:47:39,228 status = _inner_run() 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-12T02:47:39,228 return self.run(options, args) 2025-09-12T02:47:39,228 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-12T02:47:39,228 return func(self, options, args) 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-12T02:47:39,228 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-12T02:47:39,228 result = self._result = resolver.resolve( 2025-09-12T02:47:39,228 ~~~~~~~~~~~~~~~~^ 2025-09-12T02:47:39,228 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-12T02:47:39,228 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T02:47:39,228 ) 2025-09-12T02:47:39,228 ^ 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-12T02:47:39,228 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-12T02:47:39,228 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-12T02:47:39,228 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-12T02:47:39,228 if not criterion.candidates: 2025-09-12T02:47:39,228 ^^^^^^^^^^^^^^^^^^^^ 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-12T02:47:39,228 return bool(self._sequence) 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-12T02:47:39,228 self._bool = any(self) 2025-09-12T02:47:39,228 ~~~^^^^^^ 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-12T02:47:39,228 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-12T02:47:39,228 ^^^^^^^^ 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-12T02:47:39,228 candidate = func() 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-12T02:47:39,228 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-12T02:47:39,228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-12T02:47:39,228 link, template, name, version 2025-09-12T02:47:39,228 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T02:47:39,228 ) 2025-09-12T02:47:39,228 ^ 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-12T02:47:39,228 self._link_candidate_cache[link] = LinkCandidate( 2025-09-12T02:47:39,228 ~~~~~~~~~~~~~^ 2025-09-12T02:47:39,228 link, 2025-09-12T02:47:39,228 ^^^^^ 2025-09-12T02:47:39,228 ...<3 lines>... 2025-09-12T02:47:39,228 version=version, 2025-09-12T02:47:39,228 ^^^^^^^^^^^^^^^^ 2025-09-12T02:47:39,228 ) 2025-09-12T02:47:39,228 ^ 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-12T02:47:39,228 super().__init__( 2025-09-12T02:47:39,228 ~~~~~~~~~~~~~~~~^ 2025-09-12T02:47:39,228 link=link, 2025-09-12T02:47:39,228 ^^^^^^^^^^ 2025-09-12T02:47:39,228 ...<4 lines>... 2025-09-12T02:47:39,228 version=version, 2025-09-12T02:47:39,228 ^^^^^^^^^^^^^^^^ 2025-09-12T02:47:39,228 ) 2025-09-12T02:47:39,228 ^ 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-12T02:47:39,228 self.dist = self._prepare() 2025-09-12T02:47:39,228 ~~~~~~~~~~~~~^^ 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-12T02:47:39,228 dist = self._prepare_distribution() 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-12T02:47:39,228 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-12T02:47:39,228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-12T02:47:39,228 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-12T02:47:39,228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-12T02:47:39,228 dist = _get_prepared_distribution( 2025-09-12T02:47:39,228 req, 2025-09-12T02:47:39,228 ...<3 lines>... 2025-09-12T02:47:39,228 self.check_build_deps, 2025-09-12T02:47:39,228 ) 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-12T02:47:39,228 abstract_dist.prepare_distribution_metadata( 2025-09-12T02:47:39,228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-12T02:47:39,228 finder, build_isolation, check_build_deps 2025-09-12T02:47:39,228 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T02:47:39,228 ) 2025-09-12T02:47:39,228 ^ 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-12T02:47:39,228 self.req.prepare_metadata() 2025-09-12T02:47:39,228 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-12T02:47:39,228 self.metadata_directory = generate_metadata_legacy( 2025-09-12T02:47:39,228 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-12T02:47:39,228 build_env=self.build_env, 2025-09-12T02:47:39,228 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T02:47:39,228 ...<3 lines>... 2025-09-12T02:47:39,228 details=details, 2025-09-12T02:47:39,228 ^^^^^^^^^^^^^^^^ 2025-09-12T02:47:39,228 ) 2025-09-12T02:47:39,228 ^ 2025-09-12T02:47:39,228 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-12T02:47:39,228 raise MetadataGenerationFailed(package_details=details) from error 2025-09-12T02:47:39,228 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-12T02:47:39,248 Removed scipion-em-susantomo==3.0b3 from https://files.pythonhosted.org/packages/91/d8/f635600a03f911adf7d9522fb80b49dd1d5170f5d80566b3a1b42eec93ad/scipion-em-susantomo-3.0b3.tar.gz from build tracker '/tmp/pip-build-tracker-v2rsxcyv' 2025-09-12T02:47:39,248 Removed build tracker: '/tmp/pip-build-tracker-v2rsxcyv'