2025-09-12T16:40:03,326 Created temporary directory: /tmp/pip-build-tracker-efnaftq1 2025-09-12T16:40:03,327 Initialized build tracking at /tmp/pip-build-tracker-efnaftq1 2025-09-12T16:40:03,327 Created build tracker: /tmp/pip-build-tracker-efnaftq1 2025-09-12T16:40:03,327 Entered build tracker: /tmp/pip-build-tracker-efnaftq1 2025-09-12T16:40:03,327 Created temporary directory: /tmp/pip-wheel-a1n55ufl 2025-09-12T16:40:03,331 Created temporary directory: /tmp/pip-ephem-wheel-cache-46md7svb 2025-09-12T16:40:03,394 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-12T16:40:03,397 2 location(s) to search for versions of fmsne: 2025-09-12T16:40:03,397 * https://pypi.org/simple/fmsne/ 2025-09-12T16:40:03,397 * https://www.piwheels.org/simple/fmsne/ 2025-09-12T16:40:03,397 Fetching project page and analyzing links: https://pypi.org/simple/fmsne/ 2025-09-12T16:40:03,398 Getting page https://pypi.org/simple/fmsne/ 2025-09-12T16:40:03,399 Found index url https://pypi.org/simple/ 2025-09-12T16:40:03,474 Fetched page https://pypi.org/simple/fmsne/ as application/vnd.pypi.simple.v1+json 2025-09-12T16:40:03,475 Found link https://files.pythonhosted.org/packages/68/e6/020a27969f5f0bff0e12e289e24f52953827c476daa03894140f48cbe242/fmsne-0.5.0.tar.gz (from https://pypi.org/simple/fmsne/), version: 0.5.0 2025-09-12T16:40:03,476 Found link https://files.pythonhosted.org/packages/96/08/72bc50fc6a1f6c6459fde6b5a3dad656510f5e637cf3876035501b4cb981/fmsne-0.5.1.tar.gz (from https://pypi.org/simple/fmsne/), version: 0.5.1 2025-09-12T16:40:03,476 Found link https://files.pythonhosted.org/packages/d8/ce/2dd8e5caf8fe4e62c34513a7e05d988cae70bbb4a77f2b517e9e5e1bd299/fmsne-0.6.0.tar.gz (from https://pypi.org/simple/fmsne/), version: 0.6.0 2025-09-12T16:40:03,476 Found link https://files.pythonhosted.org/packages/50/41/564cf8c9462fbb2e493fcb5b6756b8dbfb54b4181c8070611dbf5618bbf2/fmsne-0.6.1.tar.gz (from https://pypi.org/simple/fmsne/), version: 0.6.1 2025-09-12T16:40:03,477 Found link https://files.pythonhosted.org/packages/5d/b6/6a83ff68bca917baa2fcdede4858b56990d67e655f97994c255b88b18057/fmsne-0.6.2.tar.gz (from https://pypi.org/simple/fmsne/), version: 0.6.2 2025-09-12T16:40:03,477 Found link https://files.pythonhosted.org/packages/b3/8e/7085d65dc2fd59779c7eb5c596d99842772b6dc67c31e0bd7c30c1f8d0b2/fmsne-0.6.3.tar.gz (from https://pypi.org/simple/fmsne/), version: 0.6.3 2025-09-12T16:40:03,477 Found link https://files.pythonhosted.org/packages/c0/cc/5142b31be1d82b0643e8c7afbe7a6d4dc6eecbb1da815be49d780399d0f1/fmsne-0.6.4.tar.gz (from https://pypi.org/simple/fmsne/), version: 0.6.4 2025-09-12T16:40:03,478 Found link https://files.pythonhosted.org/packages/d7/57/6080c1ae48689e970132e55c6906145cb9cfe8244e59122f0df9db2f056c/fmsne-0.6.5.tar.gz (from https://pypi.org/simple/fmsne/), version: 0.6.5 2025-09-12T16:40:03,478 Found link https://files.pythonhosted.org/packages/c9/12/d3e9b000de0ca81fe59b28d570a6aec9cd7b531c2114de63fde161fc29f0/fmsne-0.6.6.tar.gz (from https://pypi.org/simple/fmsne/), version: 0.6.6 2025-09-12T16:40:03,478 Fetching project page and analyzing links: https://www.piwheels.org/simple/fmsne/ 2025-09-12T16:40:03,479 Getting page https://www.piwheels.org/simple/fmsne/ 2025-09-12T16:40:03,480 Found index url https://www.piwheels.org/simple/ 2025-09-12T16:40:03,569 Fetched page https://www.piwheels.org/simple/fmsne/ as text/html 2025-09-12T16:40:03,577 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.6-cp37-cp37m-linux_armv6l.whl#sha256=ca829c45160a040a6cad9f62a7516f1f3d139935dc7147d875015eab87d83708 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,577 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.6-cp37-cp37m-linux_armv7l.whl#sha256=ca829c45160a040a6cad9f62a7516f1f3d139935dc7147d875015eab87d83708 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,577 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.6-cp39-cp39-linux_armv6l.whl#sha256=4be4da84c40754184d88163e4dc1fe95a7576c2ee24e5a3f2330f79911902cee (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,577 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.6-cp39-cp39-linux_armv7l.whl#sha256=4be4da84c40754184d88163e4dc1fe95a7576c2ee24e5a3f2330f79911902cee (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,578 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.5-cp37-cp37m-linux_armv6l.whl#sha256=f0a529a484f025b0db81eae7b8b0c0b0782451f973884a3b2b083aeb55143781 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,578 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.5-cp37-cp37m-linux_armv7l.whl#sha256=f0a529a484f025b0db81eae7b8b0c0b0782451f973884a3b2b083aeb55143781 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,578 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.5-cp39-cp39-linux_armv6l.whl#sha256=a38c800db67c81aeba6a210fa3569c495485267135e027f9e5cf03ea29791852 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,578 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.5-cp39-cp39-linux_armv7l.whl#sha256=a38c800db67c81aeba6a210fa3569c495485267135e027f9e5cf03ea29791852 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,578 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.4-cp37-cp37m-linux_armv6l.whl#sha256=96611cf810b634d154c6e53909d06cd562359d8d0f9ef968e14cdd83bce5383c (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,578 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.4-cp37-cp37m-linux_armv7l.whl#sha256=96611cf810b634d154c6e53909d06cd562359d8d0f9ef968e14cdd83bce5383c (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,579 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.4-cp39-cp39-linux_armv6l.whl#sha256=59138ba3c3d9cd32c99698bf4b422501a5d915cba539817fe0bc8a234e27da64 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,579 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.4-cp39-cp39-linux_armv7l.whl#sha256=59138ba3c3d9cd32c99698bf4b422501a5d915cba539817fe0bc8a234e27da64 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,579 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.3-cp37-cp37m-linux_armv6l.whl#sha256=57f6040dd322c49531bebf107accfac5355d07f14a7092bc4bc0f106f6470702 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,579 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.3-cp37-cp37m-linux_armv7l.whl#sha256=57f6040dd322c49531bebf107accfac5355d07f14a7092bc4bc0f106f6470702 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,579 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.3-cp39-cp39-linux_armv6l.whl#sha256=43502a839b3fbc05d3ad7731206bba7e22eb1e217037819c6bfe135967c66e5f (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,579 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.3-cp39-cp39-linux_armv7l.whl#sha256=43502a839b3fbc05d3ad7731206bba7e22eb1e217037819c6bfe135967c66e5f (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,580 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.2-cp39-cp39-linux_armv6l.whl#sha256=15db9a17dfdbcad756af3e3ef1809d8ec381bee2256388329eff98bbcbf21f5d (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,580 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.2-cp39-cp39-linux_armv7l.whl#sha256=15db9a17dfdbcad756af3e3ef1809d8ec381bee2256388329eff98bbcbf21f5d (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,580 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.2-cp37-cp37m-linux_armv6l.whl#sha256=382ff444b29114b368f19c182534790eaf0a3924f0205cbbf0b7e1bb11d31458 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,580 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.2-cp37-cp37m-linux_armv7l.whl#sha256=382ff444b29114b368f19c182534790eaf0a3924f0205cbbf0b7e1bb11d31458 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,580 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.1-cp37-cp37m-linux_armv6l.whl#sha256=c1471b4c223e22ecfaf92ba4021f2a1df722ccc3cbb2bdd3a752e49dc0688ed7 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,580 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.1-cp37-cp37m-linux_armv7l.whl#sha256=c1471b4c223e22ecfaf92ba4021f2a1df722ccc3cbb2bdd3a752e49dc0688ed7 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,581 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.1-cp39-cp39-linux_armv6l.whl#sha256=45caa023175620cd6cfcb5634d52b36bb7799f498c016f628b7d75c39452b8dc (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,581 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.1-cp39-cp39-linux_armv7l.whl#sha256=45caa023175620cd6cfcb5634d52b36bb7799f498c016f628b7d75c39452b8dc (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,581 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.0-cp37-cp37m-linux_armv6l.whl#sha256=c67fc36178a838473be10c65f0a58ecb6139c5507f51b228d837ed052de29350 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,581 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.0-cp37-cp37m-linux_armv7l.whl#sha256=c67fc36178a838473be10c65f0a58ecb6139c5507f51b228d837ed052de29350 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,581 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.0-cp39-cp39-linux_armv6l.whl#sha256=12d8f661180eb3f4dbeb96e95478c60882344799d36195d9fe585d34fc01b925 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,581 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.6.0-cp39-cp39-linux_armv7l.whl#sha256=12d8f661180eb3f4dbeb96e95478c60882344799d36195d9fe585d34fc01b925 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,581 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.5.1-cp37-cp37m-linux_armv6l.whl#sha256=5294d2fbf369035317ed6d81f24d58b19d3e0cd6f642a0c4131a4d875e76a13d (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,582 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.5.1-cp37-cp37m-linux_armv7l.whl#sha256=5294d2fbf369035317ed6d81f24d58b19d3e0cd6f642a0c4131a4d875e76a13d (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,582 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.5.1-cp39-cp39-linux_armv6l.whl#sha256=3c1346b46c6e8605472943558489006c6400a77c7370321376daca8f9af1e410 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,582 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.5.1-cp39-cp39-linux_armv7l.whl#sha256=3c1346b46c6e8605472943558489006c6400a77c7370321376daca8f9af1e410 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,582 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.5.0-cp37-cp37m-linux_armv6l.whl#sha256=5415087d2de4bba9c090746b7b04952603a3fded30a73ab0f7c4a1917fbcd3e1 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,582 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.5.0-cp37-cp37m-linux_armv7l.whl#sha256=5415087d2de4bba9c090746b7b04952603a3fded30a73ab0f7c4a1917fbcd3e1 (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,583 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.5.0-cp39-cp39-linux_armv6l.whl#sha256=56992670c18c217199fed426b53360632a27c3cef74c761a2c6a2707162562cf (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,583 Skipping link: No binaries permitted for fmsne: https://archive1.piwheels.org/simple/fmsne/fmsne-0.5.0-cp39-cp39-linux_armv7l.whl#sha256=56992670c18c217199fed426b53360632a27c3cef74c761a2c6a2707162562cf (from https://www.piwheels.org/simple/fmsne/) 2025-09-12T16:40:03,583 Skipping link: not a file: https://www.piwheels.org/simple/fmsne/ 2025-09-12T16:40:03,583 Skipping link: not a file: https://pypi.org/simple/fmsne/ 2025-09-12T16:40:03,610 Given no hashes to check 1 links for project 'fmsne': discarding no candidates 2025-09-12T16:40:03,611 Collecting fmsne==0.6.6 2025-09-12T16:40:03,613 Created temporary directory: /tmp/pip-unpack-vfqbnwlo 2025-09-12T16:40:03,753 Downloading fmsne-0.6.6.tar.gz (283 kB) 2025-09-12T16:40:03,857 Added fmsne==0.6.6 from https://files.pythonhosted.org/packages/c9/12/d3e9b000de0ca81fe59b28d570a6aec9cd7b531c2114de63fde161fc29f0/fmsne-0.6.6.tar.gz to build tracker '/tmp/pip-build-tracker-efnaftq1' 2025-09-12T16:40:03,858 Running setup.py (path:/tmp/pip-wheel-a1n55ufl/fmsne_2217e1ce6903491e877a567f25f0654b/setup.py) egg_info for package fmsne 2025-09-12T16:40:03,859 Created temporary directory: /tmp/pip-pip-egg-info-60gedqly 2025-09-12T16:40:03,859 Preparing metadata (setup.py): started 2025-09-12T16:40:03,860 Running command python setup.py egg_info 2025-09-12T16:40:08,315 performance hint: fmsne/fmsne_implem.pyx:590:0: Exception check on 'sne_hdpinn_nolog' will always require the GIL to be acquired. 2025-09-12T16:40:08,315 Possible solutions: 2025-09-12T16:40:08,315 1. Declare 'sne_hdpinn_nolog' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-12T16:40:08,315 2. Use an 'int' return type on 'sne_hdpinn_nolog' to allow an error code to be returned. 2025-09-12T16:40:08,318 performance hint: fmsne/fmsne_implem.pyx:743:0: Exception check on 'ms_ldprec_nofitU' will always require the GIL to be acquired. 2025-09-12T16:40:08,318 Possible solutions: 2025-09-12T16:40:08,318 1. Declare 'ms_ldprec_nofitU' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-12T16:40:08,318 2. Use an 'int' return type on 'ms_ldprec_nofitU' to allow an error code to be returned. 2025-09-12T16:40:08,318 performance hint: fmsne/fmsne_implem.pyx:766:0: Exception check on 'ms_ldprec' will always require the GIL to be acquired. 2025-09-12T16:40:08,319 Possible solutions: 2025-09-12T16:40:08,319 1. Declare 'ms_ldprec' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-12T16:40:08,319 2. Use an 'int' return type on 'ms_ldprec' to allow an error code to be returned. 2025-09-12T16:40:08,958 performance hint: fmsne/fmsne_implem.pyx:1167:0: Exception check on 'mstsne_symmetrize' will always require the GIL to be acquired. 2025-09-12T16:40:08,959 Possible solutions: 2025-09-12T16:40:08,959 1. Declare 'mstsne_symmetrize' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-12T16:40:08,959 2. Use an 'int' return type on 'mstsne_symmetrize' to allow an error code to be returned. 2025-09-12T16:40:08,972 performance hint: fmsne/fmsne_implem.pyx:2431:0: Exception check on 'f_ldprec' will always require the GIL to be acquired. 2025-09-12T16:40:08,972 Possible solutions: 2025-09-12T16:40:08,972 1. Declare 'f_ldprec' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-12T16:40:08,972 2. Use an 'int' return type on 'f_ldprec' to allow an error code to be returned. 2025-09-12T16:40:08,979 performance hint: fmsne/fmsne_implem.pyx:3452:0: Exception check on 'fmstsne_symmetrize' will always require the GIL to be acquired. 2025-09-12T16:40:08,979 Possible solutions: 2025-09-12T16:40:08,979 1. Declare 'fmstsne_symmetrize' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-09-12T16:40:08,980 2. Use an 'int' return type on 'fmstsne_symmetrize' to allow an error code to be returned. 2025-09-12T16:40:09,724 Error compiling Cython file: 2025-09-12T16:40:09,724 ------------------------------------------------------------ 2025-09-12T16:40:09,725 ... 2025-09-12T16:40:09,725 popt.ns = k 2025-09-12T16:40:09,725 popt.inv_ns = Nd 2025-09-12T16:40:09,725 popt.p_h = &p_h[h] 2025-09-12T16:40:09,725 popt.t_h = &t_h[h] 2025-09-12T16:40:09,725 # Performing the optimization 2025-09-12T16:40:09,725 lbfgs(prod_N_nc, xopt, NULL, mssne_evaluate, NULL, popt, pparam) 2025-09-12T16:40:09,725 ^ 2025-09-12T16:40:09,725 ------------------------------------------------------------ 2025-09-12T16:40:09,726 fmsne/fmsne_implem.pyx:1146:37: Cannot assign type 'lbfgsfloatval_t (void *, const lbfgsfloatval_t *, lbfgsfloatval_t *, const int, const lbfgsfloatval_t) except? -1 nogil' to 'lbfgs_evaluate_t' (alias of 'lbfgsfloatval_t (*)(void *, lbfgsconst_p, lbfgsfloatval_t *, int, lbfgsfloatval_t) noexcept'). Exception values are incompatible. Suggest adding 'noexcept' to the type of 'mssne_evaluate'. 2025-09-12T16:40:09,761 Error compiling Cython file: 2025-09-12T16:40:09,761 ------------------------------------------------------------ 2025-09-12T16:40:09,761 ... 2025-09-12T16:40:09,761 # Updates related to the current multi-scale optimization step 2025-09-12T16:40:09,761 ms_update_mso_step(k, h, N, K_star, ds_hd, tau_h, simhd_ms, simhd_h) 2025-09-12T16:40:09,762 # Symmetrizing the multi-scale HD similarities in simhd_h. Be careful that only the top half of simhd_h contains the symmetric HD similarities. 2025-09-12T16:40:09,762 mstsne_symmetrize(K_star, simhd_ms, simhd_h) 2025-09-12T16:40:09,762 # Performing the optimization 2025-09-12T16:40:09,762 lbfgs(prod_N_nc, xopt, NULL, mstsne_evaluate, NULL, popt, pparam) 2025-09-12T16:40:09,762 ^ 2025-09-12T16:40:09,762 ------------------------------------------------------------ 2025-09-12T16:40:09,762 fmsne/fmsne_implem.pyx:1391:37: Cannot assign type 'lbfgsfloatval_t (void *, const lbfgsfloatval_t *, lbfgsfloatval_t *, const int, const lbfgsfloatval_t) except? -1 nogil' to 'lbfgs_evaluate_t' (alias of 'lbfgsfloatval_t (*)(void *, lbfgsconst_p, lbfgsfloatval_t *, int, lbfgsfloatval_t) noexcept'). Exception values are incompatible. Suggest adding 'noexcept' to the type of 'mstsne_evaluate'. 2025-09-12T16:40:10,024 Error compiling Cython file: 2025-09-12T16:40:10,024 ------------------------------------------------------------ 2025-09-12T16:40:10,024 ... 2025-09-12T16:40:10,024 else: 2025-09-12T16:40:10,024 popt.p_h = &p_h[h] 2025-09-12T16:40:10,024 popt.t_h = &t_h[h] 2025-09-12T16:40:10,024 popt.sbsa += K_star 2025-09-12T16:40:10,025 # Performing the optimization 2025-09-12T16:40:10,025 lbfgs(prod_N_nc, xopt, NULL, fmssne_evaluate, NULL, popt, pparam) 2025-09-12T16:40:10,025 ^ 2025-09-12T16:40:10,025 ------------------------------------------------------------ 2025-09-12T16:40:10,025 fmsne/fmsne_implem.pyx:3298:37: Cannot assign type 'lbfgsfloatval_t (void *, const lbfgsfloatval_t *, lbfgsfloatval_t *, const int, const lbfgsfloatval_t) except? -1' to 'lbfgs_evaluate_t' (alias of 'lbfgsfloatval_t (*)(void *, lbfgsconst_p, lbfgsfloatval_t *, int, lbfgsfloatval_t) noexcept'). Exception values are incompatible. Suggest adding 'noexcept' to the type of 'fmssne_evaluate'. 2025-09-12T16:40:10,135 Error compiling Cython file: 2025-09-12T16:40:10,135 ------------------------------------------------------------ 2025-09-12T16:40:10,136 ... 2025-09-12T16:40:10,136 # that only the similarities between i and j such that j>i are 2025-09-12T16:40:10,136 # actually symetrized, since only these are used in the 2025-09-12T16:40:10,136 # evaluate function. 2025-09-12T16:40:10,136 fmstsne_symmetrize(n_rs, sLm_nt, simhd_ms_nn_i_rs, m_nn, simhd_h_nn_i_rs) 2025-09-12T16:40:10,136 # Performing the optimization 2025-09-12T16:40:10,136 lbfgs(prod_N_nc, xopt, NULL, fmstsne_evaluate, NULL, popt, pparam) 2025-09-12T16:40:10,136 ^ 2025-09-12T16:40:10,136 ------------------------------------------------------------ 2025-09-12T16:40:10,137 fmsne/fmsne_implem.pyx:3956:37: Cannot assign type 'lbfgsfloatval_t (void *, const lbfgsfloatval_t *, lbfgsfloatval_t *, const int, const lbfgsfloatval_t) except? -1' to 'lbfgs_evaluate_t' (alias of 'lbfgsfloatval_t (*)(void *, lbfgsconst_p, lbfgsfloatval_t *, int, lbfgsfloatval_t) noexcept'). Exception values are incompatible. Suggest adding 'noexcept' to the type of 'fmstsne_evaluate'. 2025-09-12T16:40:11,604 Traceback (most recent call last): 2025-09-12T16:40:11,607 File "", line 2, in 2025-09-12T16:40:11,607 exec(compile(''' 2025-09-12T16:40:11,608 ~~~~^^^^^^^^^^^^ 2025-09-12T16:40:11,608 # This is -- a caller that pip uses to run setup.py 2025-09-12T16:40:11,608 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T16:40:11,608 ...<32 lines>... 2025-09-12T16:40:11,608 exec(compile(setup_py_code, filename, "exec")) 2025-09-12T16:40:11,608 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T16:40:11,609 ''' % ('/tmp/pip-wheel-a1n55ufl/fmsne_2217e1ce6903491e877a567f25f0654b/setup.py',), "", "exec")) 2025-09-12T16:40:11,609 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T16:40:11,609 File "", line 35, in 2025-09-12T16:40:11,609 File "/tmp/pip-wheel-a1n55ufl/fmsne_2217e1ce6903491e877a567f25f0654b/setup.py", line 21, in 2025-09-12T16:40:11,609 ext_modules = cythonize([ 2025-09-12T16:40:11,609 ~~~~~~~~~^^ 2025-09-12T16:40:11,610 Extension('fmsne_implem', [ 2025-09-12T16:40:11,610 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T16:40:11,610 'fmsne/fmsne_implem.pyx', 2025-09-12T16:40:11,610 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T16:40:11,610 'fmsne/lbfgs.c' 2025-09-12T16:40:11,610 ^^^^^^^^^^^^^^^ 2025-09-12T16:40:11,611 ])], annotate=False), 2025-09-12T16:40:11,611 ^^^^^^^^^^^^^^^^^^^^ 2025-09-12T16:40:11,611 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-12T16:40:11,611 cythonize_one(*args) 2025-09-12T16:40:11,611 ~~~~~~~~~~~~~^^^^^^^ 2025-09-12T16:40:11,611 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-12T16:40:11,612 raise CompileError(None, pyx_file) 2025-09-12T16:40:11,612 Cython.Compiler.Errors.CompileError: fmsne/fmsne_implem.pyx 2025-09-12T16:40:11,612 Compiling fmsne/fmsne_implem.pyx because it changed. 2025-09-12T16:40:11,612 [1/1] Cythonizing fmsne/fmsne_implem.pyx 2025-09-12T16:40:12,417 ERROR: python setup.py egg_info exited with 1 2025-09-12T16:40:12,431 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-12T16:40:12,431 exec(compile('"'"''"'"''"'"' 2025-09-12T16:40:12,431 # This is -- a caller that pip uses to run setup.py 2025-09-12T16:40:12,431 # 2025-09-12T16:40:12,431 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-12T16:40:12,431 # import from `distutils.core` to work with newer packaging standards. 2025-09-12T16:40:12,431 # - It provides a clear error message when setuptools is not installed. 2025-09-12T16:40:12,431 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-12T16:40:12,431 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-12T16:40:12,431 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-12T16:40:12,431 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-12T16:40:12,431 import os, sys, tokenize, traceback 2025-09-12T16:40:12,431 2025-09-12T16:40:12,431 try: 2025-09-12T16:40:12,431 import setuptools 2025-09-12T16:40:12,431 except ImportError: 2025-09-12T16:40:12,431 print( 2025-09-12T16:40:12,431 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-12T16:40:12,431 "the build environment with exception:", 2025-09-12T16:40:12,431 file=sys.stderr, 2025-09-12T16:40:12,431 ) 2025-09-12T16:40:12,431 traceback.print_exc() 2025-09-12T16:40:12,431 sys.exit(1) 2025-09-12T16:40:12,431 2025-09-12T16:40:12,431 __file__ = %r 2025-09-12T16:40:12,431 sys.argv[0] = __file__ 2025-09-12T16:40:12,431 2025-09-12T16:40:12,431 if os.path.exists(__file__): 2025-09-12T16:40:12,431 filename = __file__ 2025-09-12T16:40:12,431 with tokenize.open(__file__) as f: 2025-09-12T16:40:12,431 setup_py_code = f.read() 2025-09-12T16:40:12,431 else: 2025-09-12T16:40:12,431 filename = "" 2025-09-12T16:40:12,431 setup_py_code = "from setuptools import setup; setup()" 2025-09-12T16:40:12,431 2025-09-12T16:40:12,431 exec(compile(setup_py_code, filename, "exec")) 2025-09-12T16:40:12,431 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-a1n55ufl/fmsne_2217e1ce6903491e877a567f25f0654b/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-60gedqly[/] 2025-09-12T16:40:12,431 [bold magenta]cwd[/]: /tmp/pip-wheel-a1n55ufl/fmsne_2217e1ce6903491e877a567f25f0654b/ 2025-09-12T16:40:12,431 Preparing metadata (setup.py): finished with status 'error' 2025-09-12T16:40:12,432 ERROR: metadata generation failed 2025-09-12T16:40:12,438 Exception information: 2025-09-12T16:40:12,438 Traceback (most recent call last): 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-12T16:40:12,438 call_subprocess( 2025-09-12T16:40:12,438 ~~~~~~~~~~~~~~~^ 2025-09-12T16:40:12,438 args, 2025-09-12T16:40:12,438 ^^^^^ 2025-09-12T16:40:12,438 ...<2 lines>... 2025-09-12T16:40:12,438 spinner=spinner, 2025-09-12T16:40:12,438 ^^^^^^^^^^^^^^^^ 2025-09-12T16:40:12,438 ) 2025-09-12T16:40:12,438 ^ 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-12T16:40:12,438 raise error 2025-09-12T16:40:12,438 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-12T16:40:12,438 2025-09-12T16:40:12,438 The above exception was the direct cause of the following exception: 2025-09-12T16:40:12,438 2025-09-12T16:40:12,438 Traceback (most recent call last): 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-12T16:40:12,438 status = _inner_run() 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-12T16:40:12,438 return self.run(options, args) 2025-09-12T16:40:12,438 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-12T16:40:12,438 return func(self, options, args) 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-12T16:40:12,438 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-12T16:40:12,438 result = self._result = resolver.resolve( 2025-09-12T16:40:12,438 ~~~~~~~~~~~~~~~~^ 2025-09-12T16:40:12,438 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-12T16:40:12,438 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T16:40:12,438 ) 2025-09-12T16:40:12,438 ^ 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-12T16:40:12,438 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-12T16:40:12,438 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-12T16:40:12,438 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-12T16:40:12,438 if not criterion.candidates: 2025-09-12T16:40:12,438 ^^^^^^^^^^^^^^^^^^^^ 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-12T16:40:12,438 return bool(self._sequence) 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-12T16:40:12,438 self._bool = any(self) 2025-09-12T16:40:12,438 ~~~^^^^^^ 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-12T16:40:12,438 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-12T16:40:12,438 ^^^^^^^^ 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-12T16:40:12,438 candidate = func() 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-12T16:40:12,438 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-12T16:40:12,438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-12T16:40:12,438 link, template, name, version 2025-09-12T16:40:12,438 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T16:40:12,438 ) 2025-09-12T16:40:12,438 ^ 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-12T16:40:12,438 self._link_candidate_cache[link] = LinkCandidate( 2025-09-12T16:40:12,438 ~~~~~~~~~~~~~^ 2025-09-12T16:40:12,438 link, 2025-09-12T16:40:12,438 ^^^^^ 2025-09-12T16:40:12,438 ...<3 lines>... 2025-09-12T16:40:12,438 version=version, 2025-09-12T16:40:12,438 ^^^^^^^^^^^^^^^^ 2025-09-12T16:40:12,438 ) 2025-09-12T16:40:12,438 ^ 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-12T16:40:12,438 super().__init__( 2025-09-12T16:40:12,438 ~~~~~~~~~~~~~~~~^ 2025-09-12T16:40:12,438 link=link, 2025-09-12T16:40:12,438 ^^^^^^^^^^ 2025-09-12T16:40:12,438 ...<4 lines>... 2025-09-12T16:40:12,438 version=version, 2025-09-12T16:40:12,438 ^^^^^^^^^^^^^^^^ 2025-09-12T16:40:12,438 ) 2025-09-12T16:40:12,438 ^ 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-12T16:40:12,438 self.dist = self._prepare() 2025-09-12T16:40:12,438 ~~~~~~~~~~~~~^^ 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-12T16:40:12,438 dist = self._prepare_distribution() 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-12T16:40:12,438 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-12T16:40:12,438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-12T16:40:12,438 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-12T16:40:12,438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-12T16:40:12,438 dist = _get_prepared_distribution( 2025-09-12T16:40:12,438 req, 2025-09-12T16:40:12,438 ...<3 lines>... 2025-09-12T16:40:12,438 self.check_build_deps, 2025-09-12T16:40:12,438 ) 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-12T16:40:12,438 abstract_dist.prepare_distribution_metadata( 2025-09-12T16:40:12,438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-12T16:40:12,438 finder, build_isolation, check_build_deps 2025-09-12T16:40:12,438 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T16:40:12,438 ) 2025-09-12T16:40:12,438 ^ 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-12T16:40:12,438 self.req.prepare_metadata() 2025-09-12T16:40:12,438 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-12T16:40:12,438 self.metadata_directory = generate_metadata_legacy( 2025-09-12T16:40:12,438 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-12T16:40:12,438 build_env=self.build_env, 2025-09-12T16:40:12,438 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T16:40:12,438 ...<3 lines>... 2025-09-12T16:40:12,438 details=details, 2025-09-12T16:40:12,438 ^^^^^^^^^^^^^^^^ 2025-09-12T16:40:12,438 ) 2025-09-12T16:40:12,438 ^ 2025-09-12T16:40:12,438 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-12T16:40:12,438 raise MetadataGenerationFailed(package_details=details) from error 2025-09-12T16:40:12,438 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-12T16:40:12,462 Removed fmsne==0.6.6 from https://files.pythonhosted.org/packages/c9/12/d3e9b000de0ca81fe59b28d570a6aec9cd7b531c2114de63fde161fc29f0/fmsne-0.6.6.tar.gz from build tracker '/tmp/pip-build-tracker-efnaftq1' 2025-09-12T16:40:12,462 Removed build tracker: '/tmp/pip-build-tracker-efnaftq1'