2025-09-12T18:48:27,798 Created temporary directory: /tmp/pip-build-tracker-zleq5yu5
2025-09-12T18:48:27,799 Initialized build tracking at /tmp/pip-build-tracker-zleq5yu5
2025-09-12T18:48:27,799 Created build tracker: /tmp/pip-build-tracker-zleq5yu5
2025-09-12T18:48:27,800 Entered build tracker: /tmp/pip-build-tracker-zleq5yu5
2025-09-12T18:48:27,800 Created temporary directory: /tmp/pip-wheel-4g9cl98w
2025-09-12T18:48:27,804 Created temporary directory: /tmp/pip-ephem-wheel-cache-v0ri2v8i
2025-09-12T18:48:27,867 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-12T18:48:27,870 2 location(s) to search for versions of cpdb-protein:
2025-09-12T18:48:27,870 * https://pypi.org/simple/cpdb-protein/
2025-09-12T18:48:27,870 * https://www.piwheels.org/simple/cpdb-protein/
2025-09-12T18:48:27,870 Fetching project page and analyzing links: https://pypi.org/simple/cpdb-protein/
2025-09-12T18:48:27,871 Getting page https://pypi.org/simple/cpdb-protein/
2025-09-12T18:48:27,872 Found index url https://pypi.org/simple/
2025-09-12T18:48:27,954 Fetched page https://pypi.org/simple/cpdb-protein/ as application/vnd.pypi.simple.v1+json
2025-09-12T18:48:27,955   Found link https://files.pythonhosted.org/packages/ed/58/a6f6d0924c7e4be968b8703eec99179403a13ce5e143660abef310a7717b/cpdb-protein-0.0.2.tar.gz (from https://pypi.org/simple/cpdb-protein/), version: 0.0.2
2025-09-12T18:48:27,956   Found link https://files.pythonhosted.org/packages/e6/25/653305959ded3d2da61b6c6d859fb1250c891728f1f821b329b4a808433c/cpdb-protein-0.1.0.tar.gz (from https://pypi.org/simple/cpdb-protein/), version: 0.1.0
2025-09-12T18:48:27,956   Found link https://files.pythonhosted.org/packages/bc/7d/207dd68c474541c4000f61ce823a1c1d2f0a431a63d4f4679b77aab6048f/cpdb-protein-0.2.0.tar.gz (from https://pypi.org/simple/cpdb-protein/), version: 0.2.0
2025-09-12T18:48:27,956 Fetching project page and analyzing links: https://www.piwheels.org/simple/cpdb-protein/
2025-09-12T18:48:27,957 Getting page https://www.piwheels.org/simple/cpdb-protein/
2025-09-12T18:48:27,958 Found index url https://www.piwheels.org/simple/
2025-09-12T18:48:28,052 Fetched page https://www.piwheels.org/simple/cpdb-protein/ as text/html
2025-09-12T18:48:28,056   Skipping link: No binaries permitted for cpdb-protein: https://archive1.piwheels.org/simple/cpdb-protein/cpdb_protein-0.2.0-cp37-cp37m-linux_armv6l.whl#sha256=11318001e946ad005126a5189bc2779bdb4dd3939ae064d075a268bb798b96f2 (from https://www.piwheels.org/simple/cpdb-protein/)
2025-09-12T18:48:28,056   Skipping link: No binaries permitted for cpdb-protein: https://archive1.piwheels.org/simple/cpdb-protein/cpdb_protein-0.2.0-cp37-cp37m-linux_armv7l.whl#sha256=11318001e946ad005126a5189bc2779bdb4dd3939ae064d075a268bb798b96f2 (from https://www.piwheels.org/simple/cpdb-protein/)
2025-09-12T18:48:28,056   Skipping link: No binaries permitted for cpdb-protein: https://archive1.piwheels.org/simple/cpdb-protein/cpdb_protein-0.2.0-cp39-cp39-linux_armv6l.whl#sha256=acdf396dae9feafe2225637cec59b62895fe71c39b795ca9d182e43b4a20d529 (from https://www.piwheels.org/simple/cpdb-protein/)
2025-09-12T18:48:28,057   Skipping link: No binaries permitted for cpdb-protein: https://archive1.piwheels.org/simple/cpdb-protein/cpdb_protein-0.2.0-cp39-cp39-linux_armv7l.whl#sha256=acdf396dae9feafe2225637cec59b62895fe71c39b795ca9d182e43b4a20d529 (from https://www.piwheels.org/simple/cpdb-protein/)
2025-09-12T18:48:28,057   Skipping link: No binaries permitted for cpdb-protein: https://archive1.piwheels.org/simple/cpdb-protein/cpdb_protein-0.2.0-cp311-cp311-linux_armv6l.whl#sha256=f35a9c3c3f89a9b63f4fb139aceef6669a8e8e733b84e7674fbd8dac61b8e238 (from https://www.piwheels.org/simple/cpdb-protein/)
2025-09-12T18:48:28,057   Skipping link: No binaries permitted for cpdb-protein: https://archive1.piwheels.org/simple/cpdb-protein/cpdb_protein-0.2.0-cp311-cp311-linux_armv7l.whl#sha256=f35a9c3c3f89a9b63f4fb139aceef6669a8e8e733b84e7674fbd8dac61b8e238 (from https://www.piwheels.org/simple/cpdb-protein/)
2025-09-12T18:48:28,057   Skipping link: No binaries permitted for cpdb-protein: https://archive1.piwheels.org/simple/cpdb-protein/cpdb_protein-0.1.0-cp37-cp37m-linux_armv6l.whl#sha256=3687d224de19ddc0ac28fd68b69e64b178ac18fc406680daa254e74302d9d286 (from https://www.piwheels.org/simple/cpdb-protein/)
2025-09-12T18:48:28,057   Skipping link: No binaries permitted for cpdb-protein: https://archive1.piwheels.org/simple/cpdb-protein/cpdb_protein-0.1.0-cp37-cp37m-linux_armv7l.whl#sha256=3687d224de19ddc0ac28fd68b69e64b178ac18fc406680daa254e74302d9d286 (from https://www.piwheels.org/simple/cpdb-protein/)
2025-09-12T18:48:28,057   Skipping link: No binaries permitted for cpdb-protein: https://archive1.piwheels.org/simple/cpdb-protein/cpdb_protein-0.1.0-cp39-cp39-linux_armv6l.whl#sha256=b63d4d4b0f6f896667bc095a4452c0f770b56197f24b95fbb4ee73d95b0429b2 (from https://www.piwheels.org/simple/cpdb-protein/)
2025-09-12T18:48:28,058   Skipping link: No binaries permitted for cpdb-protein: https://archive1.piwheels.org/simple/cpdb-protein/cpdb_protein-0.1.0-cp39-cp39-linux_armv7l.whl#sha256=b63d4d4b0f6f896667bc095a4452c0f770b56197f24b95fbb4ee73d95b0429b2 (from https://www.piwheels.org/simple/cpdb-protein/)
2025-09-12T18:48:28,058   Skipping link: No binaries permitted for cpdb-protein: https://archive1.piwheels.org/simple/cpdb-protein/cpdb_protein-0.0.2-cp37-cp37m-linux_armv6l.whl#sha256=1bb3a8682dcca32281b7e6f610373ebf0e762ad6e260460f0c7036cfb7263c8a (from https://www.piwheels.org/simple/cpdb-protein/)
2025-09-12T18:48:28,058   Skipping link: No binaries permitted for cpdb-protein: https://archive1.piwheels.org/simple/cpdb-protein/cpdb_protein-0.0.2-cp37-cp37m-linux_armv7l.whl#sha256=1bb3a8682dcca32281b7e6f610373ebf0e762ad6e260460f0c7036cfb7263c8a (from https://www.piwheels.org/simple/cpdb-protein/)
2025-09-12T18:48:28,058   Skipping link: No binaries permitted for cpdb-protein: https://archive1.piwheels.org/simple/cpdb-protein/cpdb_protein-0.0.2-cp39-cp39-linux_armv6l.whl#sha256=20b2a381b6c48b7d95899055fcaedad232305b5e3e72404912e427110ca2af51 (from https://www.piwheels.org/simple/cpdb-protein/)
2025-09-12T18:48:28,058   Skipping link: No binaries permitted for cpdb-protein: https://archive1.piwheels.org/simple/cpdb-protein/cpdb_protein-0.0.2-cp39-cp39-linux_armv7l.whl#sha256=20b2a381b6c48b7d95899055fcaedad232305b5e3e72404912e427110ca2af51 (from https://www.piwheels.org/simple/cpdb-protein/)
2025-09-12T18:48:28,058   Skipping link: No binaries permitted for cpdb-protein: https://www.piwheels.org/simple/cpdb-protein/cpdb_protein-0.0.2-cp313-cp313-linux_armv6l.whl#sha256=08a1c29831f32dd7ed8090a15a4abf7ce65d1d459bdc34cf1fbb8c7b3fb85f61 (from https://www.piwheels.org/simple/cpdb-protein/)
2025-09-12T18:48:28,059   Skipping link: No binaries permitted for cpdb-protein: https://www.piwheels.org/simple/cpdb-protein/cpdb_protein-0.0.2-cp313-cp313-linux_armv7l.whl#sha256=08a1c29831f32dd7ed8090a15a4abf7ce65d1d459bdc34cf1fbb8c7b3fb85f61 (from https://www.piwheels.org/simple/cpdb-protein/)
2025-09-12T18:48:28,059 Skipping link: not a file: https://www.piwheels.org/simple/cpdb-protein/
2025-09-12T18:48:28,059 Skipping link: not a file: https://pypi.org/simple/cpdb-protein/
2025-09-12T18:48:28,085 Given no hashes to check 1 links for project 'cpdb-protein': discarding no candidates
2025-09-12T18:48:28,086 Collecting cpdb-protein==0.1.0
2025-09-12T18:48:28,088   Created temporary directory: /tmp/pip-unpack-jn9pmguw
2025-09-12T18:48:28,232   Downloading cpdb-protein-0.1.0.tar.gz (56 kB)
2025-09-12T18:48:28,276   Added cpdb-protein==0.1.0 from https://files.pythonhosted.org/packages/e6/25/653305959ded3d2da61b6c6d859fb1250c891728f1f821b329b4a808433c/cpdb-protein-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-zleq5yu5'
2025-09-12T18:48:28,278   Running setup.py (path:/tmp/pip-wheel-4g9cl98w/cpdb-protein_e48cf9c4a2d34d8bbebd26d8af0c5473/setup.py) egg_info for package cpdb-protein
2025-09-12T18:48:28,278   Created temporary directory: /tmp/pip-pip-egg-info-zv5r_4r4
2025-09-12T18:48:28,279   Preparing metadata (setup.py): started
2025-09-12T18:48:28,280   Running command python setup.py egg_info
2025-09-12T18:48:32,080   Compiling cpdb/parser.pyx because it changed.
2025-09-12T18:48:32,080   [1/1] Cythonizing cpdb/parser.pyx
2025-09-12T18:48:32,634   running egg_info
2025-09-12T18:48:32,723   creating /tmp/pip-pip-egg-info-zv5r_4r4/cpdb_protein.egg-info
2025-09-12T18:48:32,724   writing /tmp/pip-pip-egg-info-zv5r_4r4/cpdb_protein.egg-info/PKG-INFO
2025-09-12T18:48:32,725   writing dependency_links to /tmp/pip-pip-egg-info-zv5r_4r4/cpdb_protein.egg-info/dependency_links.txt
2025-09-12T18:48:32,726   writing requirements to /tmp/pip-pip-egg-info-zv5r_4r4/cpdb_protein.egg-info/requires.txt
2025-09-12T18:48:32,726   writing top-level names to /tmp/pip-pip-egg-info-zv5r_4r4/cpdb_protein.egg-info/top_level.txt
2025-09-12T18:48:32,726   writing manifest file '/tmp/pip-pip-egg-info-zv5r_4r4/cpdb_protein.egg-info/SOURCES.txt'
2025-09-12T18:48:33,080   reading manifest file '/tmp/pip-pip-egg-info-zv5r_4r4/cpdb_protein.egg-info/SOURCES.txt'
2025-09-12T18:48:33,080   reading manifest template 'MANIFEST.in'
2025-09-12T18:48:33,081   adding license file 'LICENSE'
2025-09-12T18:48:33,084   writing manifest file '/tmp/pip-pip-egg-info-zv5r_4r4/cpdb_protein.egg-info/SOURCES.txt'
2025-09-12T18:48:33,481   Preparing metadata (setup.py): finished with status 'done'
2025-09-12T18:48:33,485   Source in /tmp/pip-wheel-4g9cl98w/cpdb-protein_e48cf9c4a2d34d8bbebd26d8af0c5473 has version 0.1.0, which satisfies requirement cpdb-protein==0.1.0 from https://files.pythonhosted.org/packages/e6/25/653305959ded3d2da61b6c6d859fb1250c891728f1f821b329b4a808433c/cpdb-protein-0.1.0.tar.gz
2025-09-12T18:48:33,486   Removed cpdb-protein==0.1.0 from https://files.pythonhosted.org/packages/e6/25/653305959ded3d2da61b6c6d859fb1250c891728f1f821b329b4a808433c/cpdb-protein-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-zleq5yu5'
2025-09-12T18:48:33,489 Created temporary directory: /tmp/pip-unpack-9jsa8gro
2025-09-12T18:48:33,489 Created temporary directory: /tmp/pip-unpack-hons30s9
2025-09-12T18:48:33,489 Building wheels for collected packages: cpdb-protein
2025-09-12T18:48:33,490   Created temporary directory: /tmp/pip-wheel-t5pdzqyy
2025-09-12T18:48:33,491   DEPRECATION: Building 'cpdb-protein' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'cpdb-protein'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-12T18:48:33,492   Building wheel for cpdb-protein (setup.py): started
2025-09-12T18:48:33,493   Destination directory: /tmp/pip-wheel-t5pdzqyy
2025-09-12T18:48:33,493   Running command python setup.py bdist_wheel
2025-09-12T18:48:35,594   running bdist_wheel
2025-09-12T18:48:36,090   running build
2025-09-12T18:48:36,091   running build_py
2025-09-12T18:48:36,191   creating build/lib.linux-armv7l-cpython-313/cpdb
2025-09-12T18:48:36,191   copying cpdb/__init__.py -> build/lib.linux-armv7l-cpython-313/cpdb
2025-09-12T18:48:36,193   running build_ext
2025-09-12T18:48:36,203   building 'cpdb.parser' extension
2025-09-12T18:48:36,204   creating build/temp.linux-armv7l-cpython-313/cpdb
2025-09-12T18:48:36,204   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c cpdb/parser.c -o build/temp.linux-armv7l-cpython-313/cpdb/parser.o
2025-09-12T18:48:48,333   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-313/cpdb/parser.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/cpdb/parser.cpython-313-arm-linux-gnueabihf.so
2025-09-12T18:48:48,604   /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-09-12T18:48:48,604   !!

2025-09-12T18:48:48,605           ********************************************************************************
2025-09-12T18:48:48,605           Please avoid running ``setup.py`` directly.
2025-09-12T18:48:48,605           Instead, use pypa/build, pypa/installer or other
2025-09-12T18:48:48,605           standards-based tools.

2025-09-12T18:48:48,605           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-12T18:48:48,605           or your builds will no longer be supported.

2025-09-12T18:48:48,605           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-09-12T18:48:48,606           ********************************************************************************

2025-09-12T18:48:48,606   !!
2025-09-12T18:48:48,606     self.initialize_options()
2025-09-12T18:48:48,701   installing to build/bdist.linux-armv7l/wheel
2025-09-12T18:48:48,701   running install
2025-09-12T18:48:48,727   running install_lib
2025-09-12T18:48:48,822   creating build/bdist.linux-armv7l/wheel
2025-09-12T18:48:48,822   creating build/bdist.linux-armv7l/wheel/cpdb
2025-09-12T18:48:48,823   copying build/lib.linux-armv7l-cpython-313/cpdb/parser.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./cpdb
2025-09-12T18:48:48,825   copying build/lib.linux-armv7l-cpython-313/cpdb/__init__.py -> build/bdist.linux-armv7l/wheel/./cpdb
2025-09-12T18:48:48,826   running install_egg_info
2025-09-12T18:48:48,934   running egg_info
2025-09-12T18:48:49,053   writing cpdb_protein.egg-info/PKG-INFO
2025-09-12T18:48:49,055   writing dependency_links to cpdb_protein.egg-info/dependency_links.txt
2025-09-12T18:48:49,056   writing requirements to cpdb_protein.egg-info/requires.txt
2025-09-12T18:48:49,056   writing top-level names to cpdb_protein.egg-info/top_level.txt
2025-09-12T18:48:49,155   reading manifest file 'cpdb_protein.egg-info/SOURCES.txt'
2025-09-12T18:48:49,157   reading manifest template 'MANIFEST.in'
2025-09-12T18:48:49,158   adding license file 'LICENSE'
2025-09-12T18:48:49,161   writing manifest file 'cpdb_protein.egg-info/SOURCES.txt'
2025-09-12T18:48:49,161   Copying cpdb_protein.egg-info to build/bdist.linux-armv7l/wheel/./cpdb_protein-0.1.0-py3.13.egg-info
2025-09-12T18:48:49,164   running install_scripts
2025-09-12T18:48:49,226   creating build/bdist.linux-armv7l/wheel/cpdb_protein-0.1.0.dist-info/WHEEL
2025-09-12T18:48:49,228   creating '/tmp/pip-wheel-t5pdzqyy/cpdb_protein-0.1.0-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-09-12T18:48:49,229   adding 'cpdb/__init__.py'
2025-09-12T18:48:49,329   adding 'cpdb/parser.cpython-313-arm-linux-gnueabihf.so'
2025-09-12T18:48:49,334   adding 'cpdb_protein-0.1.0.dist-info/licenses/LICENSE'
2025-09-12T18:48:49,334   adding 'cpdb_protein-0.1.0.dist-info/METADATA'
2025-09-12T18:48:49,335   adding 'cpdb_protein-0.1.0.dist-info/WHEEL'
2025-09-12T18:48:49,335   adding 'cpdb_protein-0.1.0.dist-info/top_level.txt'
2025-09-12T18:48:49,336   adding 'cpdb_protein-0.1.0.dist-info/RECORD'
2025-09-12T18:48:49,337   removing build/bdist.linux-armv7l/wheel
2025-09-12T18:48:49,547   Building wheel for cpdb-protein (setup.py): finished with status 'done'
2025-09-12T18:48:49,550   Created wheel for cpdb-protein: filename=cpdb_protein-0.1.0-cp313-cp313-linux_armv7l.whl size=178780 sha256=33dfcdbf098d13c894786f8f580553fac29f91ae247513166a9f933106e0bff2
2025-09-12T18:48:49,550   Stored in directory: /tmp/pip-ephem-wheel-cache-v0ri2v8i/wheels/af/49/c5/7271b07a8cec0bc2447295d072dce1b665c0550d02e334e709
2025-09-12T18:48:49,560 Successfully built cpdb-protein
2025-09-12T18:48:49,561 Removed build tracker: '/tmp/pip-build-tracker-zleq5yu5'