2025-09-12T21:15:31,755 Created temporary directory: /tmp/pip-build-tracker-cp9gcuii 2025-09-12T21:15:31,756 Initialized build tracking at /tmp/pip-build-tracker-cp9gcuii 2025-09-12T21:15:31,756 Created build tracker: /tmp/pip-build-tracker-cp9gcuii 2025-09-12T21:15:31,756 Entered build tracker: /tmp/pip-build-tracker-cp9gcuii 2025-09-12T21:15:31,756 Created temporary directory: /tmp/pip-wheel-ix7hekr_ 2025-09-12T21:15:31,760 Created temporary directory: /tmp/pip-ephem-wheel-cache-657_oo72 2025-09-12T21:15:31,818 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-12T21:15:31,821 2 location(s) to search for versions of seldompy: 2025-09-12T21:15:31,821 * https://pypi.org/simple/seldompy/ 2025-09-12T21:15:31,821 * https://www.piwheels.org/simple/seldompy/ 2025-09-12T21:15:31,822 Fetching project page and analyzing links: https://pypi.org/simple/seldompy/ 2025-09-12T21:15:31,822 Getting page https://pypi.org/simple/seldompy/ 2025-09-12T21:15:31,823 Found index url https://pypi.org/simple/ 2025-09-12T21:15:31,979 Fetched page https://pypi.org/simple/seldompy/ as application/vnd.pypi.simple.v1+json 2025-09-12T21:15:31,981 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/15/1e/e2ffb54d95eb04e2c11dd109754fe19e290c4a9ab4e2bf2a57159a503d92/SELDOMpy-0.9.8-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2025-09-12T21:15:31,981 Found link https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz (from https://pypi.org/simple/seldompy/), version: 0.9.8 2025-09-12T21:15:31,982 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/cf/fd/55148fcbd4b491569b925910992a7dbfb4cf630ee94833bee16e50f9e330/SELDOMpy-0.9.9-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2025-09-12T21:15:31,982 Found link https://files.pythonhosted.org/packages/00/23/70aa2c3b7b7acaec975e9932bd8c6f75c84068615791d7ec9e8d050db099/SELDOMpy-0.9.9.tar.gz (from https://pypi.org/simple/seldompy/), version: 0.9.9 2025-09-12T21:15:31,982 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/cb/fd/951ae4a46031bbbf8524e54e3d416b1b1485eef99d01efccc8bed8d19443/SELDOMpy-1.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2025-09-12T21:15:31,982 Found link https://files.pythonhosted.org/packages/ed/8c/d56a9dc40587ae6bfce50954f024f71864d3fe9604d0c4200cc5704f5688/SELDOMpy-1.0.tar.gz (from https://pypi.org/simple/seldompy/), version: 1.0 2025-09-12T21:15:31,983 Fetching project page and analyzing links: https://www.piwheels.org/simple/seldompy/ 2025-09-12T21:15:31,983 Getting page https://www.piwheels.org/simple/seldompy/ 2025-09-12T21:15:31,984 Found index url https://www.piwheels.org/simple/ 2025-09-12T21:15:32,087 Fetched page https://www.piwheels.org/simple/seldompy/ as text/html 2025-09-12T21:15:32,088 Skipping link: not a file: https://www.piwheels.org/simple/seldompy/ 2025-09-12T21:15:32,088 Skipping link: not a file: https://pypi.org/simple/seldompy/ 2025-09-12T21:15:32,112 Given no hashes to check 1 links for project 'seldompy': discarding no candidates 2025-09-12T21:15:32,114 Collecting seldompy==0.9.8 2025-09-12T21:15:32,115 Created temporary directory: /tmp/pip-unpack-87z7y2s6 2025-09-12T21:15:32,260 Downloading SELDOMpy-0.9.8.tar.gz (260 kB) 2025-09-12T21:15:32,430 Added seldompy==0.9.8 from https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz to build tracker '/tmp/pip-build-tracker-cp9gcuii' 2025-09-12T21:15:32,432 Running setup.py (path:/tmp/pip-wheel-ix7hekr_/seldompy_33db4351b033429892c83214ec081ed5/setup.py) egg_info for package seldompy 2025-09-12T21:15:32,432 Created temporary directory: /tmp/pip-pip-egg-info-0tvb98a_ 2025-09-12T21:15:32,432 Preparing metadata (setup.py): started 2025-09-12T21:15:32,433 Running command python setup.py egg_info 2025-09-12T21:15:33,599 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-12T21:15:33,599 !! 2025-09-12T21:15:33,599 ******************************************************************************** 2025-09-12T21:15:33,599 Usage of dash-separated 'description-file' will not be supported in future 2025-09-12T21:15:33,600 versions. Please use the underscore name 'description_file' instead. 2025-09-12T21:15:33,600 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-12T21:15:33,600 or your builds will no longer be supported. 2025-09-12T21:15:33,600 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-12T21:15:33,600 ******************************************************************************** 2025-09-12T21:15:33,600 !! 2025-09-12T21:15:33,601 opt = self._enforce_underscore(opt, section) 2025-09-12T21:15:34,137 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-12T21:15:34,138 !! 2025-09-12T21:15:34,138 ******************************************************************************** 2025-09-12T21:15:34,138 Usage of dash-separated 'description-file' will not be supported in future 2025-09-12T21:15:34,138 versions. Please use the underscore name 'description_file' instead. 2025-09-12T21:15:34,138 (Affected: SELDOMpy). 2025-09-12T21:15:34,138 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-12T21:15:34,138 or your builds will no longer be supported. 2025-09-12T21:15:34,139 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-12T21:15:34,139 ******************************************************************************** 2025-09-12T21:15:34,139 !! 2025-09-12T21:15:34,139 opt = self._enforce_underscore(opt, section) 2025-09-12T21:15:34,139 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-12T21:15:34,139 !! 2025-09-12T21:15:34,140 ******************************************************************************** 2025-09-12T21:15:34,140 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-12T21:15:34,140 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-12T21:15:34,140 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-12T21:15:34,140 ******************************************************************************** 2025-09-12T21:15:34,140 !! 2025-09-12T21:15:34,141 self._finalize_license_expression() 2025-09-12T21:15:34,228 running egg_info 2025-09-12T21:15:34,318 creating /tmp/pip-pip-egg-info-0tvb98a_/SELDOMpy.egg-info 2025-09-12T21:15:34,318 writing /tmp/pip-pip-egg-info-0tvb98a_/SELDOMpy.egg-info/PKG-INFO 2025-09-12T21:15:34,319 writing dependency_links to /tmp/pip-pip-egg-info-0tvb98a_/SELDOMpy.egg-info/dependency_links.txt 2025-09-12T21:15:34,320 writing requirements to /tmp/pip-pip-egg-info-0tvb98a_/SELDOMpy.egg-info/requires.txt 2025-09-12T21:15:34,321 writing top-level names to /tmp/pip-pip-egg-info-0tvb98a_/SELDOMpy.egg-info/top_level.txt 2025-09-12T21:15:34,321 writing manifest file '/tmp/pip-pip-egg-info-0tvb98a_/SELDOMpy.egg-info/SOURCES.txt' 2025-09-12T21:15:34,679 reading manifest file '/tmp/pip-pip-egg-info-0tvb98a_/SELDOMpy.egg-info/SOURCES.txt' 2025-09-12T21:15:34,680 reading manifest template 'MANIFEST.in' 2025-09-12T21:15:34,684 adding license file 'LICENSE.txt' 2025-09-12T21:15:34,690 writing manifest file '/tmp/pip-pip-egg-info-0tvb98a_/SELDOMpy.egg-info/SOURCES.txt' 2025-09-12T21:15:34,849 Preparing metadata (setup.py): finished with status 'done' 2025-09-12T21:15:34,855 Source in /tmp/pip-wheel-ix7hekr_/seldompy_33db4351b033429892c83214ec081ed5 has version 0.9.8, which satisfies requirement seldompy==0.9.8 from https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz 2025-09-12T21:15:34,855 Removed seldompy==0.9.8 from https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz from build tracker '/tmp/pip-build-tracker-cp9gcuii' 2025-09-12T21:15:34,860 Created temporary directory: /tmp/pip-unpack-4_uj55i3 2025-09-12T21:15:34,861 Created temporary directory: /tmp/pip-unpack-0hfxj4wh 2025-09-12T21:15:34,861 Building wheels for collected packages: seldompy 2025-09-12T21:15:34,862 Created temporary directory: /tmp/pip-wheel-fdxgp4_k 2025-09-12T21:15:34,863 DEPRECATION: Building 'seldompy' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'seldompy'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-12T21:15:34,864 Building wheel for seldompy (setup.py): started 2025-09-12T21:15:34,865 Destination directory: /tmp/pip-wheel-fdxgp4_k 2025-09-12T21:15:34,865 Running command python setup.py bdist_wheel 2025-09-12T21:15:35,845 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-12T21:15:35,845 !! 2025-09-12T21:15:35,845 ******************************************************************************** 2025-09-12T21:15:35,845 Usage of dash-separated 'description-file' will not be supported in future 2025-09-12T21:15:35,845 versions. Please use the underscore name 'description_file' instead. 2025-09-12T21:15:35,846 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-12T21:15:35,846 or your builds will no longer be supported. 2025-09-12T21:15:35,846 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-12T21:15:35,846 ******************************************************************************** 2025-09-12T21:15:35,846 !! 2025-09-12T21:15:35,846 opt = self._enforce_underscore(opt, section) 2025-09-12T21:15:36,367 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-12T21:15:36,367 !! 2025-09-12T21:15:36,367 ******************************************************************************** 2025-09-12T21:15:36,367 Usage of dash-separated 'description-file' will not be supported in future 2025-09-12T21:15:36,367 versions. Please use the underscore name 'description_file' instead. 2025-09-12T21:15:36,367 (Affected: SELDOMpy). 2025-09-12T21:15:36,368 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-12T21:15:36,368 or your builds will no longer be supported. 2025-09-12T21:15:36,368 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-12T21:15:36,368 ******************************************************************************** 2025-09-12T21:15:36,368 !! 2025-09-12T21:15:36,368 opt = self._enforce_underscore(opt, section) 2025-09-12T21:15:36,370 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-12T21:15:36,370 !! 2025-09-12T21:15:36,370 ******************************************************************************** 2025-09-12T21:15:36,370 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-12T21:15:36,370 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-12T21:15:36,370 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-12T21:15:36,371 ******************************************************************************** 2025-09-12T21:15:36,371 !! 2025-09-12T21:15:36,371 self._finalize_license_expression() 2025-09-12T21:15:36,372 running bdist_wheel 2025-09-12T21:15:36,810 running build 2025-09-12T21:15:36,810 running build_py 2025-09-12T21:15:36,901 creating build/lib.linux-armv7l-cpython-313/SELDOMpy 2025-09-12T21:15:36,902 copying SELDOMpy/__init__.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy 2025-09-12T21:15:36,903 creating build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:36,904 copying SELDOMpy/src/__init__.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:36,905 running egg_info 2025-09-12T21:15:36,994 writing SELDOMpy.egg-info/PKG-INFO 2025-09-12T21:15:36,995 writing dependency_links to SELDOMpy.egg-info/dependency_links.txt 2025-09-12T21:15:36,997 writing requirements to SELDOMpy.egg-info/requires.txt 2025-09-12T21:15:36,997 writing top-level names to SELDOMpy.egg-info/top_level.txt 2025-09-12T21:15:37,090 reading manifest file 'SELDOMpy.egg-info/SOURCES.txt' 2025-09-12T21:15:37,100 reading manifest template 'MANIFEST.in' 2025-09-12T21:15:37,104 adding license file 'LICENSE.txt' 2025-09-12T21:15:37,111 writing manifest file 'SELDOMpy.egg-info/SOURCES.txt' 2025-09-12T21:15:37,113 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SELDOMpy.examples.MAPK' is absent from the `packages` configuration. 2025-09-12T21:15:37,113 !! 2025-09-12T21:15:37,114 ******************************************************************************** 2025-09-12T21:15:37,114 ############################ 2025-09-12T21:15:37,114 # Package would be ignored # 2025-09-12T21:15:37,114 ############################ 2025-09-12T21:15:37,114 Python recognizes 'SELDOMpy.examples.MAPK' as an importable package[^1], 2025-09-12T21:15:37,114 but it is absent from setuptools' `packages` configuration. 2025-09-12T21:15:37,114 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-12T21:15:37,114 package, please make sure that 'SELDOMpy.examples.MAPK' is explicitly added 2025-09-12T21:15:37,114 to the `packages` configuration field. 2025-09-12T21:15:37,115 Alternatively, you can also rely on setuptools' discovery methods 2025-09-12T21:15:37,115 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-12T21:15:37,115 instead of `find_packages(...)`/`find:`). 2025-09-12T21:15:37,115 You can read more about "package discovery" on setuptools documentation page: 2025-09-12T21:15:37,115 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-12T21:15:37,115 If you don't want 'SELDOMpy.examples.MAPK' to be distributed and are 2025-09-12T21:15:37,115 already explicitly excluding 'SELDOMpy.examples.MAPK' via 2025-09-12T21:15:37,115 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-12T21:15:37,116 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-12T21:15:37,116 combination with a more fine grained `package-data` configuration. 2025-09-12T21:15:37,116 You can read more about "package data files" on setuptools documentation page: 2025-09-12T21:15:37,116 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-12T21:15:37,116 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-12T21:15:37,116 even if it does not contain any `.py` files. 2025-09-12T21:15:37,116 On the other hand, currently there is no concept of package data 2025-09-12T21:15:37,117 directory, all directories are treated like packages. 2025-09-12T21:15:37,117 ******************************************************************************** 2025-09-12T21:15:37,117 !! 2025-09-12T21:15:37,117 check.warn(importable) 2025-09-12T21:15:37,118 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SELDOMpy.examples.SP' is absent from the `packages` configuration. 2025-09-12T21:15:37,118 !! 2025-09-12T21:15:37,118 ******************************************************************************** 2025-09-12T21:15:37,118 ############################ 2025-09-12T21:15:37,118 # Package would be ignored # 2025-09-12T21:15:37,118 ############################ 2025-09-12T21:15:37,119 Python recognizes 'SELDOMpy.examples.SP' as an importable package[^1], 2025-09-12T21:15:37,119 but it is absent from setuptools' `packages` configuration. 2025-09-12T21:15:37,119 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-12T21:15:37,119 package, please make sure that 'SELDOMpy.examples.SP' is explicitly added 2025-09-12T21:15:37,119 to the `packages` configuration field. 2025-09-12T21:15:37,119 Alternatively, you can also rely on setuptools' discovery methods 2025-09-12T21:15:37,119 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-12T21:15:37,119 instead of `find_packages(...)`/`find:`). 2025-09-12T21:15:37,120 You can read more about "package discovery" on setuptools documentation page: 2025-09-12T21:15:37,120 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-12T21:15:37,120 If you don't want 'SELDOMpy.examples.SP' to be distributed and are 2025-09-12T21:15:37,120 already explicitly excluding 'SELDOMpy.examples.SP' via 2025-09-12T21:15:37,120 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-12T21:15:37,120 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-12T21:15:37,120 combination with a more fine grained `package-data` configuration. 2025-09-12T21:15:37,120 You can read more about "package data files" on setuptools documentation page: 2025-09-12T21:15:37,121 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-12T21:15:37,121 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-12T21:15:37,121 even if it does not contain any `.py` files. 2025-09-12T21:15:37,121 On the other hand, currently there is no concept of package data 2025-09-12T21:15:37,121 directory, all directories are treated like packages. 2025-09-12T21:15:37,121 ******************************************************************************** 2025-09-12T21:15:37,121 !! 2025-09-12T21:15:37,121 check.warn(importable) 2025-09-12T21:15:37,122 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SELDOMpy.functions' is absent from the `packages` configuration. 2025-09-12T21:15:37,122 !! 2025-09-12T21:15:37,122 ******************************************************************************** 2025-09-12T21:15:37,122 ############################ 2025-09-12T21:15:37,123 # Package would be ignored # 2025-09-12T21:15:37,123 ############################ 2025-09-12T21:15:37,123 Python recognizes 'SELDOMpy.functions' as an importable package[^1], 2025-09-12T21:15:37,123 but it is absent from setuptools' `packages` configuration. 2025-09-12T21:15:37,123 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-12T21:15:37,123 package, please make sure that 'SELDOMpy.functions' is explicitly added 2025-09-12T21:15:37,123 to the `packages` configuration field. 2025-09-12T21:15:37,123 Alternatively, you can also rely on setuptools' discovery methods 2025-09-12T21:15:37,124 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-12T21:15:37,124 instead of `find_packages(...)`/`find:`). 2025-09-12T21:15:37,124 You can read more about "package discovery" on setuptools documentation page: 2025-09-12T21:15:37,124 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-12T21:15:37,124 If you don't want 'SELDOMpy.functions' to be distributed and are 2025-09-12T21:15:37,124 already explicitly excluding 'SELDOMpy.functions' via 2025-09-12T21:15:37,124 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-12T21:15:37,125 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-12T21:15:37,125 combination with a more fine grained `package-data` configuration. 2025-09-12T21:15:37,125 You can read more about "package data files" on setuptools documentation page: 2025-09-12T21:15:37,125 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-12T21:15:37,125 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-12T21:15:37,125 even if it does not contain any `.py` files. 2025-09-12T21:15:37,125 On the other hand, currently there is no concept of package data 2025-09-12T21:15:37,126 directory, all directories are treated like packages. 2025-09-12T21:15:37,126 ******************************************************************************** 2025-09-12T21:15:37,126 !! 2025-09-12T21:15:37,126 check.warn(importable) 2025-09-12T21:15:37,126 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SELDOMpy.src.include.include_amigo' is absent from the `packages` configuration. 2025-09-12T21:15:37,126 !! 2025-09-12T21:15:37,126 ******************************************************************************** 2025-09-12T21:15:37,127 ############################ 2025-09-12T21:15:37,127 # Package would be ignored # 2025-09-12T21:15:37,127 ############################ 2025-09-12T21:15:37,127 Python recognizes 'SELDOMpy.src.include.include_amigo' as an importable package[^1], 2025-09-12T21:15:37,127 but it is absent from setuptools' `packages` configuration. 2025-09-12T21:15:37,127 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-12T21:15:37,127 package, please make sure that 'SELDOMpy.src.include.include_amigo' is explicitly added 2025-09-12T21:15:37,127 to the `packages` configuration field. 2025-09-12T21:15:37,128 Alternatively, you can also rely on setuptools' discovery methods 2025-09-12T21:15:37,128 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-12T21:15:37,128 instead of `find_packages(...)`/`find:`). 2025-09-12T21:15:37,128 You can read more about "package discovery" on setuptools documentation page: 2025-09-12T21:15:37,128 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-12T21:15:37,128 If you don't want 'SELDOMpy.src.include.include_amigo' to be distributed and are 2025-09-12T21:15:37,128 already explicitly excluding 'SELDOMpy.src.include.include_amigo' via 2025-09-12T21:15:37,129 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-12T21:15:37,129 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-12T21:15:37,129 combination with a more fine grained `package-data` configuration. 2025-09-12T21:15:37,129 You can read more about "package data files" on setuptools documentation page: 2025-09-12T21:15:37,129 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-12T21:15:37,129 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-12T21:15:37,130 even if it does not contain any `.py` files. 2025-09-12T21:15:37,130 On the other hand, currently there is no concept of package data 2025-09-12T21:15:37,130 directory, all directories are treated like packages. 2025-09-12T21:15:37,130 ******************************************************************************** 2025-09-12T21:15:37,130 !! 2025-09-12T21:15:37,130 check.warn(importable) 2025-09-12T21:15:37,130 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SELDOMpy.src.include.include_cvodes.cvodes' is absent from the `packages` configuration. 2025-09-12T21:15:37,130 !! 2025-09-12T21:15:37,130 ******************************************************************************** 2025-09-12T21:15:37,131 ############################ 2025-09-12T21:15:37,131 # Package would be ignored # 2025-09-12T21:15:37,131 ############################ 2025-09-12T21:15:37,131 Python recognizes 'SELDOMpy.src.include.include_cvodes.cvodes' as an importable package[^1], 2025-09-12T21:15:37,131 but it is absent from setuptools' `packages` configuration. 2025-09-12T21:15:37,131 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-12T21:15:37,131 package, please make sure that 'SELDOMpy.src.include.include_cvodes.cvodes' is explicitly added 2025-09-12T21:15:37,131 to the `packages` configuration field. 2025-09-12T21:15:37,132 Alternatively, you can also rely on setuptools' discovery methods 2025-09-12T21:15:37,132 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-12T21:15:37,132 instead of `find_packages(...)`/`find:`). 2025-09-12T21:15:37,132 You can read more about "package discovery" on setuptools documentation page: 2025-09-12T21:15:37,132 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-12T21:15:37,132 If you don't want 'SELDOMpy.src.include.include_cvodes.cvodes' to be distributed and are 2025-09-12T21:15:37,132 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.cvodes' via 2025-09-12T21:15:37,132 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-12T21:15:37,133 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-12T21:15:37,133 combination with a more fine grained `package-data` configuration. 2025-09-12T21:15:37,133 You can read more about "package data files" on setuptools documentation page: 2025-09-12T21:15:37,133 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-12T21:15:37,133 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-12T21:15:37,133 even if it does not contain any `.py` files. 2025-09-12T21:15:37,134 On the other hand, currently there is no concept of package data 2025-09-12T21:15:37,134 directory, all directories are treated like packages. 2025-09-12T21:15:37,134 ******************************************************************************** 2025-09-12T21:15:37,134 !! 2025-09-12T21:15:37,134 check.warn(importable) 2025-09-12T21:15:37,134 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SELDOMpy.src.include.include_cvodes.nvector' is absent from the `packages` configuration. 2025-09-12T21:15:37,134 !! 2025-09-12T21:15:37,134 ******************************************************************************** 2025-09-12T21:15:37,135 ############################ 2025-09-12T21:15:37,135 # Package would be ignored # 2025-09-12T21:15:37,135 ############################ 2025-09-12T21:15:37,135 Python recognizes 'SELDOMpy.src.include.include_cvodes.nvector' as an importable package[^1], 2025-09-12T21:15:37,135 but it is absent from setuptools' `packages` configuration. 2025-09-12T21:15:37,135 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-12T21:15:37,135 package, please make sure that 'SELDOMpy.src.include.include_cvodes.nvector' is explicitly added 2025-09-12T21:15:37,135 to the `packages` configuration field. 2025-09-12T21:15:37,136 Alternatively, you can also rely on setuptools' discovery methods 2025-09-12T21:15:37,136 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-12T21:15:37,136 instead of `find_packages(...)`/`find:`). 2025-09-12T21:15:37,136 You can read more about "package discovery" on setuptools documentation page: 2025-09-12T21:15:37,136 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-12T21:15:37,136 If you don't want 'SELDOMpy.src.include.include_cvodes.nvector' to be distributed and are 2025-09-12T21:15:37,137 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.nvector' via 2025-09-12T21:15:37,137 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-12T21:15:37,137 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-12T21:15:37,137 combination with a more fine grained `package-data` configuration. 2025-09-12T21:15:37,137 You can read more about "package data files" on setuptools documentation page: 2025-09-12T21:15:37,137 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-12T21:15:37,138 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-12T21:15:37,138 even if it does not contain any `.py` files. 2025-09-12T21:15:37,138 On the other hand, currently there is no concept of package data 2025-09-12T21:15:37,138 directory, all directories are treated like packages. 2025-09-12T21:15:37,138 ******************************************************************************** 2025-09-12T21:15:37,138 !! 2025-09-12T21:15:37,138 check.warn(importable) 2025-09-12T21:15:37,138 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SELDOMpy.src.include.include_cvodes.sundials' is absent from the `packages` configuration. 2025-09-12T21:15:37,138 !! 2025-09-12T21:15:37,139 ******************************************************************************** 2025-09-12T21:15:37,139 ############################ 2025-09-12T21:15:37,139 # Package would be ignored # 2025-09-12T21:15:37,139 ############################ 2025-09-12T21:15:37,139 Python recognizes 'SELDOMpy.src.include.include_cvodes.sundials' as an importable package[^1], 2025-09-12T21:15:37,139 but it is absent from setuptools' `packages` configuration. 2025-09-12T21:15:37,139 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-12T21:15:37,140 package, please make sure that 'SELDOMpy.src.include.include_cvodes.sundials' is explicitly added 2025-09-12T21:15:37,140 to the `packages` configuration field. 2025-09-12T21:15:37,140 Alternatively, you can also rely on setuptools' discovery methods 2025-09-12T21:15:37,140 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-12T21:15:37,140 instead of `find_packages(...)`/`find:`). 2025-09-12T21:15:37,140 You can read more about "package discovery" on setuptools documentation page: 2025-09-12T21:15:37,140 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-12T21:15:37,141 If you don't want 'SELDOMpy.src.include.include_cvodes.sundials' to be distributed and are 2025-09-12T21:15:37,141 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.sundials' via 2025-09-12T21:15:37,141 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-12T21:15:37,141 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-12T21:15:37,141 combination with a more fine grained `package-data` configuration. 2025-09-12T21:15:37,141 You can read more about "package data files" on setuptools documentation page: 2025-09-12T21:15:37,142 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-12T21:15:37,142 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-12T21:15:37,142 even if it does not contain any `.py` files. 2025-09-12T21:15:37,142 On the other hand, currently there is no concept of package data 2025-09-12T21:15:37,142 directory, all directories are treated like packages. 2025-09-12T21:15:37,142 ******************************************************************************** 2025-09-12T21:15:37,142 !! 2025-09-12T21:15:37,143 check.warn(importable) 2025-09-12T21:15:37,143 creating build/lib.linux-armv7l-cpython-313/SELDOMpy/examples/MAPK 2025-09-12T21:15:37,143 copying SELDOMpy/examples/MAPK/MAPK.xlsx -> build/lib.linux-armv7l-cpython-313/SELDOMpy/examples/MAPK 2025-09-12T21:15:37,143 copying SELDOMpy/examples/MAPK/MAPK_training_and_reduce.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/examples/MAPK 2025-09-12T21:15:37,143 copying SELDOMpy/examples/MAPK/MAPK_training_and_reduce_pyPESTO.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/examples/MAPK 2025-09-12T21:15:37,143 creating build/lib.linux-armv7l-cpython-313/SELDOMpy/examples/SP 2025-09-12T21:15:37,143 copying SELDOMpy/examples/SP/SP.xlsx -> build/lib.linux-armv7l-cpython-313/SELDOMpy/examples/SP 2025-09-12T21:15:37,143 copying SELDOMpy/examples/SP/SP_training_and_reduce.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/examples/SP 2025-09-12T21:15:37,143 copying SELDOMpy/examples/SP/SP_training_and_reduce_pyPESTO.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/examples/SP 2025-09-12T21:15:37,144 creating build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-12T21:15:37,144 copying SELDOMpy/functions/buildmim.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-12T21:15:37,144 copying SELDOMpy/functions/extras.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-12T21:15:37,144 copying SELDOMpy/functions/gen_exps.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-12T21:15:37,144 copying SELDOMpy/functions/getLBODEmodel.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-12T21:15:37,144 copying SELDOMpy/functions/getRandomLBODEmodel.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-12T21:15:37,144 copying SELDOMpy/functions/optimization.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-12T21:15:37,144 copying SELDOMpy/functions/plot_results.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-12T21:15:37,145 copying SELDOMpy/functions/reduce_fun.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-12T21:15:37,146 copying SELDOMpy/functions/simulate_logic_based_ode.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-12T21:15:37,146 copying SELDOMpy/functions/simulate_logic_based_ode_obs.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-12T21:15:37,147 copying SELDOMpy/src/AMIGO_model.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,148 copying SELDOMpy/src/AMIGO_model_stats.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,149 copying SELDOMpy/src/AMIGO_problem.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,149 copying SELDOMpy/src/CNOStructure.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,150 copying SELDOMpy/src/anODEModel.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,151 copying SELDOMpy/src/cvodea.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,152 copying SELDOMpy/src/cvodea_io.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,152 copying SELDOMpy/src/cvodes.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,154 copying SELDOMpy/src/cvodes_band.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,155 copying SELDOMpy/src/cvodes_bandpre.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,156 copying SELDOMpy/src/cvodes_bandpre_impl.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,157 copying SELDOMpy/src/cvodes_bbdpre.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,158 copying SELDOMpy/src/cvodes_bbdpre_impl.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,158 copying SELDOMpy/src/cvodes_dense.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,159 copying SELDOMpy/src/cvodes_diag.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,160 copying SELDOMpy/src/cvodes_diag_impl.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,161 copying SELDOMpy/src/cvodes_direct.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,162 copying SELDOMpy/src/cvodes_direct_impl.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,162 copying SELDOMpy/src/cvodes_impl.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,163 copying SELDOMpy/src/cvodes_io.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,164 copying SELDOMpy/src/cvodes_spbcgs.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,165 copying SELDOMpy/src/cvodes_spgmr.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,166 copying SELDOMpy/src/cvodes_spils.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,167 copying SELDOMpy/src/cvodes_spils_impl.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,168 copying SELDOMpy/src/cvodes_sptfqmr.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,169 copying SELDOMpy/src/decimal2binary.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,169 copying SELDOMpy/src/dhc.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,170 copying SELDOMpy/src/findStates.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,171 copying SELDOMpy/src/fnvector_serial.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,171 copying SELDOMpy/src/fnvector_serial.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,172 copying SELDOMpy/src/getAdjacencyMatrix.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,173 copying SELDOMpy/src/getNumBits.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,174 copying SELDOMpy/src/getNumInputs.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,175 copying SELDOMpy/src/getStateIndex.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,175 copying SELDOMpy/src/getTruthTables.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,176 copying SELDOMpy/src/get_count_bits.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,177 copying SELDOMpy/src/get_input_index.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,178 copying SELDOMpy/src/get_support_truth_tables.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,178 copying SELDOMpy/src/get_truth_tables_index.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,179 copying SELDOMpy/src/hill_function.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,180 copying SELDOMpy/src/linear_transfer_function.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,180 copying SELDOMpy/src/normHill.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,181 copying SELDOMpy/src/nvector_serial.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,182 copying SELDOMpy/src/printAdjMat.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,183 copying SELDOMpy/src/printInterMat.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,184 copying SELDOMpy/src/printNminiTerms.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,184 copying SELDOMpy/src/printTruthTables.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,185 copying SELDOMpy/src/sim_logic_ode.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,186 copying SELDOMpy/src/simulate_amigo_model.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,187 copying SELDOMpy/src/sundials_band.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,188 copying SELDOMpy/src/sundials_dense.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,188 copying SELDOMpy/src/sundials_direct.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,189 copying SELDOMpy/src/sundials_iterative.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,190 copying SELDOMpy/src/sundials_math.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,191 copying SELDOMpy/src/sundials_nvector.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,191 copying SELDOMpy/src/sundials_spbcgs.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,192 copying SELDOMpy/src/sundials_spgmr.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,193 copying SELDOMpy/src/sundials_sptfqmr.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,194 creating build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_amigo 2025-09-12T21:15:37,194 copying SELDOMpy/src/include/include_amigo/AMIGO_hdf5.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_amigo 2025-09-12T21:15:37,195 copying SELDOMpy/src/include/include_amigo/AMIGO_model.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_amigo 2025-09-12T21:15:37,196 copying SELDOMpy/src/include/include_amigo/AMIGO_model_stats.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_amigo 2025-09-12T21:15:37,197 copying SELDOMpy/src/include/include_amigo/AMIGO_problem.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_amigo 2025-09-12T21:15:37,198 copying SELDOMpy/src/include/include_amigo/amigoJAC.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_amigo 2025-09-12T21:15:37,198 copying SELDOMpy/src/include/include_amigo/amigoRHS.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_amigo 2025-09-12T21:15:37,199 copying SELDOMpy/src/include/include_amigo/amigoSensRHS.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_amigo 2025-09-12T21:15:37,200 copying SELDOMpy/src/include/include_amigo/simulate_amigo_model.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_amigo 2025-09-12T21:15:37,201 creating build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-12T21:15:37,201 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-12T21:15:37,202 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_band.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-12T21:15:37,203 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_bandpre.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-12T21:15:37,204 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_bbdpre.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-12T21:15:37,205 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_dense.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-12T21:15:37,206 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_diag.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-12T21:15:37,206 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_direct.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-12T21:15:37,207 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_lapack.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-12T21:15:37,208 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spbcgs.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-12T21:15:37,209 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spgmr.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-12T21:15:37,210 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spils.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-12T21:15:37,210 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_sptfqmr.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-12T21:15:37,211 creating build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/nvector 2025-09-12T21:15:37,212 copying SELDOMpy/src/include/include_cvodes/nvector/nvector_serial.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/nvector 2025-09-12T21:15:37,212 creating build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-12T21:15:37,213 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_band.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-12T21:15:37,214 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_config.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-12T21:15:37,214 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_dense.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-12T21:15:37,215 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_direct.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-12T21:15:37,216 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_fnvector.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-12T21:15:37,217 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_iterative.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-12T21:15:37,218 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_lapack.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-12T21:15:37,218 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_math.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-12T21:15:37,219 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_nvector.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-12T21:15:37,220 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_spbcgs.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-12T21:15:37,221 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_spgmr.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-12T21:15:37,222 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_sptfqmr.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-12T21:15:37,223 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_types.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-12T21:15:37,225 running build_ext 2025-09-12T21:15:37,631 building 'hello' extension 2025-09-12T21:15:37,641 creating build/temp.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-12T21:15:37,647 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/AMIGO_model.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/AMIGO_model.o 2025-09-12T21:15:37,800 SELDOMpy/src/AMIGO_model.c: In function ‘simulate_AMIGO_model’: 2025-09-12T21:15:37,800 SELDOMpy/src/AMIGO_model.c:225:1: warning: control reaches end of non-void function [-Wreturn-type] 2025-09-12T21:15:37,800 225 | }; 2025-09-12T21:15:37,800 | ^ 2025-09-12T21:15:38,386 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/AMIGO_model_stats.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/AMIGO_model_stats.o 2025-09-12T21:15:38,428 SELDOMpy/src/AMIGO_model_stats.c:1:9: warning: #pragma once in main file 2025-09-12T21:15:38,428 1 | #pragma once 2025-09-12T21:15:38,428 | ^~~~ 2025-09-12T21:15:38,497 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/AMIGO_problem.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/AMIGO_problem.o 2025-09-12T21:15:38,642 SELDOMpy/src/AMIGO_problem.c: In function ‘eval_AMIGO_problem_LSQ’: 2025-09-12T21:15:38,642 SELDOMpy/src/AMIGO_problem.c:132: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2025-09-12T21:15:38,643 132 | #pragma omp parallel num_threads(amigo_problem->nthreads) 2025-09-12T21:15:38,643 SELDOMpy/src/AMIGO_problem.c:134: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2025-09-12T21:15:38,643 134 | #pragma omp for schedule(dynamic,1) private(i) 2025-09-12T21:15:38,645 SELDOMpy/src/AMIGO_problem.c:127:13: warning: unused variable ‘counter’ [-Wunused-variable] 2025-09-12T21:15:38,645 127 | int counter=0; 2025-09-12T21:15:38,645 | ^~~~~~~ 2025-09-12T21:15:38,645 SELDOMpy/src/AMIGO_problem.c:126:22: warning: unused variable ‘n_exps’ [-Wunused-variable] 2025-09-12T21:15:38,645 126 | int i, j, k, n_exps, n_times, n_obs; 2025-09-12T21:15:38,645 | ^~~~~~ 2025-09-12T21:15:38,646 SELDOMpy/src/AMIGO_problem.c: In function ‘eval_AMIGO_problem_LLK’: 2025-09-12T21:15:38,646 SELDOMpy/src/AMIGO_problem.c:185: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2025-09-12T21:15:38,646 185 | #pragma omp parallel num_threads(amigo_problem->nthreads) 2025-09-12T21:15:38,647 SELDOMpy/src/AMIGO_problem.c:187: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2025-09-12T21:15:38,647 187 | #pragma omp for schedule(dynamic,1) private(i,flag) 2025-09-12T21:15:38,648 SELDOMpy/src/AMIGO_problem.c:182:13: warning: unused variable ‘counter’ [-Wunused-variable] 2025-09-12T21:15:38,648 182 | int counter=0; 2025-09-12T21:15:38,648 | ^~~~~~~ 2025-09-12T21:15:38,649 SELDOMpy/src/AMIGO_problem.c:181:53: warning: variable ‘flag’ set but not used [-Wunused-but-set-variable] 2025-09-12T21:15:38,649 181 | int i, j, k, n_exps, n_times, n_obs,flag; 2025-09-12T21:15:38,649 | ^~~~ 2025-09-12T21:15:38,649 SELDOMpy/src/AMIGO_problem.c:181:30: warning: unused variable ‘n_exps’ [-Wunused-variable] 2025-09-12T21:15:38,649 181 | int i, j, k, n_exps, n_times, n_obs,flag; 2025-09-12T21:15:38,649 | ^~~~~~ 2025-09-12T21:15:39,114 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/anODEModel.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/anODEModel.o 2025-09-12T21:15:39,251 SELDOMpy/src/anODEModel.c: In function ‘amigoRHS’: 2025-09-12T21:15:39,251 SELDOMpy/src/anODEModel.c:23:9: warning: unused variable ‘countBin’ [-Wunused-variable] 2025-09-12T21:15:39,251 23 | int countBin=0; 2025-09-12T21:15:39,252 | ^~~~~~~~ 2025-09-12T21:15:39,252 SELDOMpy/src/anODEModel.c: In function ‘amigo_Y_at_tcon’: 2025-09-12T21:15:39,253 SELDOMpy/src/anODEModel.c:118:18: warning: unused variable ‘amigo_model’ [-Wunused-variable] 2025-09-12T21:15:39,253 118 | AMIGO_model* amigo_model=(AMIGO_model*)data; 2025-09-12T21:15:39,253 | ^~~~~~~~~~~ 2025-09-12T21:15:39,429 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodea.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodea.o 2025-09-12T21:15:39,595 SELDOMpy/src/cvodea.c: In function ‘CVAhermiteStorePnt’: 2025-09-12T21:15:39,597 SELDOMpy/src/cvodea.c:2461:11: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 2025-09-12T21:15:39,597 2461 | int is, retval; 2025-09-12T21:15:39,597 | ^~~~~~ 2025-09-12T21:15:39,609 SELDOMpy/src/cvodea.c: In function ‘CVArhsQ’: 2025-09-12T21:15:39,611 SELDOMpy/src/cvodea.c:2957:7: warning: variable ‘flag’ set but not used [-Wunused-but-set-variable] 2025-09-12T21:15:39,612 2957 | int flag, retval; 2025-09-12T21:15:39,613 | ^~~~ 2025-09-12T21:15:40,238 SELDOMpy/src/cvodea.c: In function ‘CVAhermiteGetY’: 2025-09-12T21:15:40,240 SELDOMpy/src/cvodea.c:2523:13: warning: ‘yS0’ may be used uninitialized [-Wmaybe-uninitialized] 2025-09-12T21:15:40,240 2523 | N_Vector *yS0, *ySd0, *yS1, *ySd1; 2025-09-12T21:15:40,240 | ^~~ 2025-09-12T21:15:40,242 SELDOMpy/src/cvodea.c:2523:19: warning: ‘ySd0’ may be used uninitialized [-Wmaybe-uninitialized] 2025-09-12T21:15:40,242 2523 | N_Vector *yS0, *ySd0, *yS1, *ySd1; 2025-09-12T21:15:40,243 | ^~~~ 2025-09-12T21:15:42,304 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodea_io.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodea_io.o 2025-09-12T21:15:42,852 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes.o 2025-09-12T21:15:43,072 SELDOMpy/src/cvodes.c: In function ‘cvHin’: 2025-09-12T21:15:43,076 SELDOMpy/src/cvodes.c:4328:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2025-09-12T21:15:43,076 4328 | if (count1 <= 2) 2025-09-12T21:15:43,076 | ^~ 2025-09-12T21:15:43,079 SELDOMpy/src/cvodes.c:4330:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2025-09-12T21:15:43,079 4330 | if (retval == QRHSFUNC_RECVR) return(CV_REPTD_QRHSFUNC_ERR); 2025-09-12T21:15:43,079 | ^~ 2025-09-12T21:15:43,439 SELDOMpy/src/cvodes.c: In function ‘cvQuadSensRhs1InternalDQ’: 2025-09-12T21:15:43,446 SELDOMpy/src/cvodes.c:8850:20: warning: variable ‘rDeltap’ set but not used [-Wunused-but-set-variable] 2025-09-12T21:15:43,447 8850 | realtype Deltap, rDeltap; 2025-09-12T21:15:43,447 | ^~~~~~~ 2025-09-12T21:15:52,561 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_band.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_band.o 2025-09-12T21:15:52,940 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_bandpre.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_bandpre.o 2025-09-12T21:15:53,458 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_bbdpre.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_bbdpre.o 2025-09-12T21:15:54,140 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_dense.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_dense.o 2025-09-12T21:15:54,477 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_diag.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_diag.o 2025-09-12T21:15:54,890 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_direct.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_direct.o 2025-09-12T21:15:55,494 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_io.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_io.o 2025-09-12T21:15:56,733 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_spbcgs.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_spbcgs.o 2025-09-12T21:15:57,160 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_spgmr.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_spgmr.o 2025-09-12T21:15:57,589 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_spils.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_spils.o 2025-09-12T21:15:58,337 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_sptfqmr.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_sptfqmr.o 2025-09-12T21:15:58,762 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/decimal2binary.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/decimal2binary.o 2025-09-12T21:15:58,911 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/dhc.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/dhc.o 2025-09-12T21:15:59,043 SELDOMpy/src/dhc.c: In function ‘dhc’: 2025-09-12T21:15:59,043 SELDOMpy/src/dhc.c:102:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2025-09-12T21:15:59,043 102 | for(i=0; iamigo_model_stats->error_flag=NULL; 2025-09-12T21:16:05,313 | ^ 2025-09-12T21:16:05,315 SELDOMpy/src/simulate_amigo_model.c: In function ‘set_simulation_stats’: 2025-09-12T21:16:05,315 SELDOMpy/src/simulate_amigo_model.c:302:34: warning: unused variable ‘nps’ [-Wunused-variable] 2025-09-12T21:16:05,315 302 | long int nli, ncfl, npe, nps; 2025-09-12T21:16:05,315 | ^~~ 2025-09-12T21:16:05,315 SELDOMpy/src/simulate_amigo_model.c:302:29: warning: unused variable ‘npe’ [-Wunused-variable] 2025-09-12T21:16:05,316 302 | long int nli, ncfl, npe, nps; 2025-09-12T21:16:05,316 | ^~~ 2025-09-12T21:16:05,316 SELDOMpy/src/simulate_amigo_model.c:302:23: warning: unused variable ‘ncfl’ [-Wunused-variable] 2025-09-12T21:16:05,316 302 | long int nli, ncfl, npe, nps; 2025-09-12T21:16:05,316 | ^~~~ 2025-09-12T21:16:05,316 SELDOMpy/src/simulate_amigo_model.c:302:18: warning: unused variable ‘nli’ [-Wunused-variable] 2025-09-12T21:16:05,316 302 | long int nli, ncfl, npe, nps; 2025-09-12T21:16:05,317 | ^~~ 2025-09-12T21:16:05,327 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-12T21:16:05,526 ERROR: python setup.py bdist_wheel exited with 1 2025-09-12T21:16:05,539 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-12T21:16:05,539 exec(compile('"'"''"'"''"'"' 2025-09-12T21:16:05,539 # This is -- a caller that pip uses to run setup.py 2025-09-12T21:16:05,539 # 2025-09-12T21:16:05,539 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-12T21:16:05,539 # import from `distutils.core` to work with newer packaging standards. 2025-09-12T21:16:05,539 # - It provides a clear error message when setuptools is not installed. 2025-09-12T21:16:05,539 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-12T21:16:05,539 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-12T21:16:05,539 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-12T21:16:05,539 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-12T21:16:05,539 import os, sys, tokenize, traceback 2025-09-12T21:16:05,539 2025-09-12T21:16:05,539 try: 2025-09-12T21:16:05,539 import setuptools 2025-09-12T21:16:05,539 except ImportError: 2025-09-12T21:16:05,539 print( 2025-09-12T21:16:05,539 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-12T21:16:05,539 "the build environment with exception:", 2025-09-12T21:16:05,539 file=sys.stderr, 2025-09-12T21:16:05,539 ) 2025-09-12T21:16:05,539 traceback.print_exc() 2025-09-12T21:16:05,539 sys.exit(1) 2025-09-12T21:16:05,539 2025-09-12T21:16:05,539 __file__ = %r 2025-09-12T21:16:05,539 sys.argv[0] = __file__ 2025-09-12T21:16:05,539 2025-09-12T21:16:05,539 if os.path.exists(__file__): 2025-09-12T21:16:05,539 filename = __file__ 2025-09-12T21:16:05,539 with tokenize.open(__file__) as f: 2025-09-12T21:16:05,539 setup_py_code = f.read() 2025-09-12T21:16:05,539 else: 2025-09-12T21:16:05,539 filename = "" 2025-09-12T21:16:05,539 setup_py_code = "from setuptools import setup; setup()" 2025-09-12T21:16:05,539 2025-09-12T21:16:05,539 exec(compile(setup_py_code, filename, "exec")) 2025-09-12T21:16:05,539 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-ix7hekr_/seldompy_33db4351b033429892c83214ec081ed5/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-fdxgp4_k[/] 2025-09-12T21:16:05,540 [bold magenta]cwd[/]: /tmp/pip-wheel-ix7hekr_/seldompy_33db4351b033429892c83214ec081ed5/ 2025-09-12T21:16:05,540 Building wheel for seldompy (setup.py): finished with status 'error' 2025-09-12T21:16:05,541 ERROR: Failed building wheel for seldompy 2025-09-12T21:16:05,542 Running setup.py clean for seldompy 2025-09-12T21:16:05,543 Running command python setup.py clean 2025-09-12T21:16:06,660 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-12T21:16:06,660 !! 2025-09-12T21:16:06,660 ******************************************************************************** 2025-09-12T21:16:06,660 Usage of dash-separated 'description-file' will not be supported in future 2025-09-12T21:16:06,660 versions. Please use the underscore name 'description_file' instead. 2025-09-12T21:16:06,661 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-12T21:16:06,661 or your builds will no longer be supported. 2025-09-12T21:16:06,661 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-12T21:16:06,661 ******************************************************************************** 2025-09-12T21:16:06,661 !! 2025-09-12T21:16:06,661 opt = self._enforce_underscore(opt, section) 2025-09-12T21:16:07,181 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-12T21:16:07,181 !! 2025-09-12T21:16:07,182 ******************************************************************************** 2025-09-12T21:16:07,182 Usage of dash-separated 'description-file' will not be supported in future 2025-09-12T21:16:07,182 versions. Please use the underscore name 'description_file' instead. 2025-09-12T21:16:07,182 (Affected: SELDOMpy). 2025-09-12T21:16:07,182 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-12T21:16:07,182 or your builds will no longer be supported. 2025-09-12T21:16:07,183 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-12T21:16:07,183 ******************************************************************************** 2025-09-12T21:16:07,183 !! 2025-09-12T21:16:07,183 opt = self._enforce_underscore(opt, section) 2025-09-12T21:16:07,183 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-12T21:16:07,183 !! 2025-09-12T21:16:07,183 ******************************************************************************** 2025-09-12T21:16:07,184 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-12T21:16:07,184 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-12T21:16:07,184 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-12T21:16:07,184 ******************************************************************************** 2025-09-12T21:16:07,184 !! 2025-09-12T21:16:07,184 self._finalize_license_expression() 2025-09-12T21:16:07,271 running clean 2025-09-12T21:16:07,446 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-12T21:16:07,448 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-12T21:16:07,453 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-12T21:16:07,453 'build/scripts-3.13' does not exist -- can't clean it 2025-09-12T21:16:07,453 removing 'build' 2025-09-12T21:16:07,612 Failed to build seldompy 2025-09-12T21:16:07,613 ERROR: Failed to build one or more wheels 2025-09-12T21:16:07,614 Exception information: 2025-09-12T21:16:07,614 Traceback (most recent call last): 2025-09-12T21:16:07,614 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-12T21:16:07,614 status = _inner_run() 2025-09-12T21:16:07,614 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-12T21:16:07,614 return self.run(options, args) 2025-09-12T21:16:07,614 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-12T21:16:07,614 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-12T21:16:07,614 return func(self, options, args) 2025-09-12T21:16:07,614 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-12T21:16:07,614 raise CommandError("Failed to build one or more wheels") 2025-09-12T21:16:07,614 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-12T21:16:07,618 Removed build tracker: '/tmp/pip-build-tracker-cp9gcuii'