2025-09-12T23:17:41,814 Created temporary directory: /tmp/pip-build-tracker-snd1sewz 2025-09-12T23:17:41,814 Initialized build tracking at /tmp/pip-build-tracker-snd1sewz 2025-09-12T23:17:41,815 Created build tracker: /tmp/pip-build-tracker-snd1sewz 2025-09-12T23:17:41,815 Entered build tracker: /tmp/pip-build-tracker-snd1sewz 2025-09-12T23:17:41,815 Created temporary directory: /tmp/pip-wheel-l5pdujqv 2025-09-12T23:17:41,818 Created temporary directory: /tmp/pip-ephem-wheel-cache-epdhjo3c 2025-09-12T23:17:41,881 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-12T23:17:41,883 2 location(s) to search for versions of scipion-em-repic: 2025-09-12T23:17:41,883 * https://pypi.org/simple/scipion-em-repic/ 2025-09-12T23:17:41,883 * https://www.piwheels.org/simple/scipion-em-repic/ 2025-09-12T23:17:41,884 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-repic/ 2025-09-12T23:17:41,884 Getting page https://pypi.org/simple/scipion-em-repic/ 2025-09-12T23:17:41,885 Found index url https://pypi.org/simple/ 2025-09-12T23:17:42,037 Fetched page https://pypi.org/simple/scipion-em-repic/ as application/vnd.pypi.simple.v1+json 2025-09-12T23:17:42,039 Found link https://files.pythonhosted.org/packages/de/bb/cf510c59ff6a75fe4b3ce329cf1c4618fa00b6fee0dc055d5a9926b42149/scipion-em-repic-3.0.0.tar.gz (from https://pypi.org/simple/scipion-em-repic/), version: 3.0.0 2025-09-12T23:17:42,039 Skipping link: No binaries permitted for scipion-em-repic: https://files.pythonhosted.org/packages/ad/05/73ea4ee99f57758486ac62b296af8f1ca00f3b160d78e891c1b462a429f0/scipion_em_repic-3.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-repic/) 2025-09-12T23:17:42,039 Skipping link: No binaries permitted for scipion-em-repic: https://files.pythonhosted.org/packages/79/6b/38be4e843fd8aadfd2769a7f8e357fac9685a84ba6f9f08329edccaa8455/scipion_em_repic-3.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-repic/) 2025-09-12T23:17:42,039 Skipping link: No binaries permitted for scipion-em-repic: https://files.pythonhosted.org/packages/e5/4f/e7173d7bd8db18d09fc9c92400ae351172b9eabf1cba708d2377112bfb2c/scipion_em_repic-3.2.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-repic/) (requires-python:>=3.8) 2025-09-12T23:17:42,040 Found link https://files.pythonhosted.org/packages/7d/1d/9dcc054260c3702d989f4450ee928332f532234d2ccf44b4f989adf214a1/scipion_em_repic-3.2.0.tar.gz (from https://pypi.org/simple/scipion-em-repic/) (requires-python:>=3.8), version: 3.2.0 2025-09-12T23:17:42,041 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-repic/ 2025-09-12T23:17:42,041 Getting page https://www.piwheels.org/simple/scipion-em-repic/ 2025-09-12T23:17:42,042 Found index url https://www.piwheels.org/simple/ 2025-09-12T23:17:42,136 Fetched page https://www.piwheels.org/simple/scipion-em-repic/ as text/html 2025-09-12T23:17:42,137 Skipping link: No binaries permitted for scipion-em-repic: https://archive1.piwheels.org/simple/scipion-em-repic/scipion_em_repic-3.2.0-py3-none-any.whl#sha256=7a2d222b7543dca0cfbcfe1ec7c641d4b69e3fec69ff27639b61cb787a092a9c (from https://www.piwheels.org/simple/scipion-em-repic/) (requires-python:>=3.8) 2025-09-12T23:17:42,138 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-repic/ 2025-09-12T23:17:42,138 Skipping link: not a file: https://pypi.org/simple/scipion-em-repic/ 2025-09-12T23:17:42,164 Given no hashes to check 1 links for project 'scipion-em-repic': discarding no candidates 2025-09-12T23:17:42,166 Collecting scipion-em-repic==3.0.0 2025-09-12T23:17:42,167 Created temporary directory: /tmp/pip-unpack-9g24lvrf 2025-09-12T23:17:42,404 Downloading scipion-em-repic-3.0.0.tar.gz (73 kB) 2025-09-12T23:17:42,464 Added scipion-em-repic==3.0.0 from https://files.pythonhosted.org/packages/de/bb/cf510c59ff6a75fe4b3ce329cf1c4618fa00b6fee0dc055d5a9926b42149/scipion-em-repic-3.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-snd1sewz' 2025-09-12T23:17:42,465 Running setup.py (path:/tmp/pip-wheel-l5pdujqv/scipion-em-repic_b482623e183b413e9449eeddb823dd70/setup.py) egg_info for package scipion-em-repic 2025-09-12T23:17:42,465 Created temporary directory: /tmp/pip-pip-egg-info-q7imcsj0 2025-09-12T23:17:42,465 Preparing metadata (setup.py): started 2025-09-12T23:17:42,466 Running command python setup.py egg_info 2025-09-12T23:17:43,026 Traceback (most recent call last): 2025-09-12T23:17:43,027 File "", line 2, in 2025-09-12T23:17:43,028 exec(compile(''' 2025-09-12T23:17:43,028 ~~~~^^^^^^^^^^^^ 2025-09-12T23:17:43,028 # This is -- a caller that pip uses to run setup.py 2025-09-12T23:17:43,028 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T23:17:43,028 ...<32 lines>... 2025-09-12T23:17:43,028 exec(compile(setup_py_code, filename, "exec")) 2025-09-12T23:17:43,029 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T23:17:43,029 ''' % ('/tmp/pip-wheel-l5pdujqv/scipion-em-repic_b482623e183b413e9449eeddb823dd70/setup.py',), "", "exec")) 2025-09-12T23:17:43,029 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T23:17:43,029 File "", line 35, in 2025-09-12T23:17:43,029 File "/tmp/pip-wheel-l5pdujqv/scipion-em-repic_b482623e183b413e9449eeddb823dd70/setup.py", line 13, in 2025-09-12T23:17:43,029 from repic import __version__ 2025-09-12T23:17:43,030 File "/tmp/pip-wheel-l5pdujqv/scipion-em-repic_b482623e183b413e9449eeddb823dd70/repic/__init__.py", line 29, in 2025-09-12T23:17:43,030 import pwem 2025-09-12T23:17:43,030 ModuleNotFoundError: No module named 'pwem' 2025-09-12T23:17:43,126 ERROR: python setup.py egg_info exited with 1 2025-09-12T23:17:43,139 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-12T23:17:43,139 exec(compile('"'"''"'"''"'"' 2025-09-12T23:17:43,139 # This is -- a caller that pip uses to run setup.py 2025-09-12T23:17:43,139 # 2025-09-12T23:17:43,139 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-12T23:17:43,139 # import from `distutils.core` to work with newer packaging standards. 2025-09-12T23:17:43,139 # - It provides a clear error message when setuptools is not installed. 2025-09-12T23:17:43,139 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-12T23:17:43,139 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-12T23:17:43,139 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-12T23:17:43,139 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-12T23:17:43,139 import os, sys, tokenize, traceback 2025-09-12T23:17:43,139 2025-09-12T23:17:43,139 try: 2025-09-12T23:17:43,139 import setuptools 2025-09-12T23:17:43,139 except ImportError: 2025-09-12T23:17:43,139 print( 2025-09-12T23:17:43,139 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-12T23:17:43,139 "the build environment with exception:", 2025-09-12T23:17:43,139 file=sys.stderr, 2025-09-12T23:17:43,139 ) 2025-09-12T23:17:43,139 traceback.print_exc() 2025-09-12T23:17:43,139 sys.exit(1) 2025-09-12T23:17:43,139 2025-09-12T23:17:43,139 __file__ = %r 2025-09-12T23:17:43,139 sys.argv[0] = __file__ 2025-09-12T23:17:43,139 2025-09-12T23:17:43,139 if os.path.exists(__file__): 2025-09-12T23:17:43,139 filename = __file__ 2025-09-12T23:17:43,139 with tokenize.open(__file__) as f: 2025-09-12T23:17:43,139 setup_py_code = f.read() 2025-09-12T23:17:43,139 else: 2025-09-12T23:17:43,139 filename = "" 2025-09-12T23:17:43,139 setup_py_code = "from setuptools import setup; setup()" 2025-09-12T23:17:43,139 2025-09-12T23:17:43,139 exec(compile(setup_py_code, filename, "exec")) 2025-09-12T23:17:43,139 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-l5pdujqv/scipion-em-repic_b482623e183b413e9449eeddb823dd70/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-q7imcsj0[/] 2025-09-12T23:17:43,140 [bold magenta]cwd[/]: /tmp/pip-wheel-l5pdujqv/scipion-em-repic_b482623e183b413e9449eeddb823dd70/ 2025-09-12T23:17:43,140 Preparing metadata (setup.py): finished with status 'error' 2025-09-12T23:17:43,141 ERROR: metadata generation failed 2025-09-12T23:17:43,147 Exception information: 2025-09-12T23:17:43,147 Traceback (most recent call last): 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-12T23:17:43,147 call_subprocess( 2025-09-12T23:17:43,147 ~~~~~~~~~~~~~~~^ 2025-09-12T23:17:43,147 args, 2025-09-12T23:17:43,147 ^^^^^ 2025-09-12T23:17:43,147 ...<2 lines>... 2025-09-12T23:17:43,147 spinner=spinner, 2025-09-12T23:17:43,147 ^^^^^^^^^^^^^^^^ 2025-09-12T23:17:43,147 ) 2025-09-12T23:17:43,147 ^ 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-12T23:17:43,147 raise error 2025-09-12T23:17:43,147 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-12T23:17:43,147 2025-09-12T23:17:43,147 The above exception was the direct cause of the following exception: 2025-09-12T23:17:43,147 2025-09-12T23:17:43,147 Traceback (most recent call last): 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-12T23:17:43,147 status = _inner_run() 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-12T23:17:43,147 return self.run(options, args) 2025-09-12T23:17:43,147 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-12T23:17:43,147 return func(self, options, args) 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-12T23:17:43,147 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-12T23:17:43,147 result = self._result = resolver.resolve( 2025-09-12T23:17:43,147 ~~~~~~~~~~~~~~~~^ 2025-09-12T23:17:43,147 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-12T23:17:43,147 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T23:17:43,147 ) 2025-09-12T23:17:43,147 ^ 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-12T23:17:43,147 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-12T23:17:43,147 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-12T23:17:43,147 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-12T23:17:43,147 if not criterion.candidates: 2025-09-12T23:17:43,147 ^^^^^^^^^^^^^^^^^^^^ 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-12T23:17:43,147 return bool(self._sequence) 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-12T23:17:43,147 self._bool = any(self) 2025-09-12T23:17:43,147 ~~~^^^^^^ 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-12T23:17:43,147 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-12T23:17:43,147 ^^^^^^^^ 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-12T23:17:43,147 candidate = func() 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-12T23:17:43,147 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-12T23:17:43,147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-12T23:17:43,147 link, template, name, version 2025-09-12T23:17:43,147 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T23:17:43,147 ) 2025-09-12T23:17:43,147 ^ 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-12T23:17:43,147 self._link_candidate_cache[link] = LinkCandidate( 2025-09-12T23:17:43,147 ~~~~~~~~~~~~~^ 2025-09-12T23:17:43,147 link, 2025-09-12T23:17:43,147 ^^^^^ 2025-09-12T23:17:43,147 ...<3 lines>... 2025-09-12T23:17:43,147 version=version, 2025-09-12T23:17:43,147 ^^^^^^^^^^^^^^^^ 2025-09-12T23:17:43,147 ) 2025-09-12T23:17:43,147 ^ 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-12T23:17:43,147 super().__init__( 2025-09-12T23:17:43,147 ~~~~~~~~~~~~~~~~^ 2025-09-12T23:17:43,147 link=link, 2025-09-12T23:17:43,147 ^^^^^^^^^^ 2025-09-12T23:17:43,147 ...<4 lines>... 2025-09-12T23:17:43,147 version=version, 2025-09-12T23:17:43,147 ^^^^^^^^^^^^^^^^ 2025-09-12T23:17:43,147 ) 2025-09-12T23:17:43,147 ^ 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-12T23:17:43,147 self.dist = self._prepare() 2025-09-12T23:17:43,147 ~~~~~~~~~~~~~^^ 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-12T23:17:43,147 dist = self._prepare_distribution() 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-12T23:17:43,147 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-12T23:17:43,147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-12T23:17:43,147 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-12T23:17:43,147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-12T23:17:43,147 dist = _get_prepared_distribution( 2025-09-12T23:17:43,147 req, 2025-09-12T23:17:43,147 ...<3 lines>... 2025-09-12T23:17:43,147 self.check_build_deps, 2025-09-12T23:17:43,147 ) 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-12T23:17:43,147 abstract_dist.prepare_distribution_metadata( 2025-09-12T23:17:43,147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-12T23:17:43,147 finder, build_isolation, check_build_deps 2025-09-12T23:17:43,147 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T23:17:43,147 ) 2025-09-12T23:17:43,147 ^ 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-12T23:17:43,147 self.req.prepare_metadata() 2025-09-12T23:17:43,147 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-12T23:17:43,147 self.metadata_directory = generate_metadata_legacy( 2025-09-12T23:17:43,147 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-12T23:17:43,147 build_env=self.build_env, 2025-09-12T23:17:43,147 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-12T23:17:43,147 ...<3 lines>... 2025-09-12T23:17:43,147 details=details, 2025-09-12T23:17:43,147 ^^^^^^^^^^^^^^^^ 2025-09-12T23:17:43,147 ) 2025-09-12T23:17:43,147 ^ 2025-09-12T23:17:43,147 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-12T23:17:43,147 raise MetadataGenerationFailed(package_details=details) from error 2025-09-12T23:17:43,147 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-12T23:17:43,171 Removed scipion-em-repic==3.0.0 from https://files.pythonhosted.org/packages/de/bb/cf510c59ff6a75fe4b3ce329cf1c4618fa00b6fee0dc055d5a9926b42149/scipion-em-repic-3.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-snd1sewz' 2025-09-12T23:17:43,171 Removed build tracker: '/tmp/pip-build-tracker-snd1sewz'