2025-09-13T00:26:44,470 Created temporary directory: /tmp/pip-build-tracker-6s4ga92g 2025-09-13T00:26:44,470 Initialized build tracking at /tmp/pip-build-tracker-6s4ga92g 2025-09-13T00:26:44,471 Created build tracker: /tmp/pip-build-tracker-6s4ga92g 2025-09-13T00:26:44,471 Entered build tracker: /tmp/pip-build-tracker-6s4ga92g 2025-09-13T00:26:44,471 Created temporary directory: /tmp/pip-wheel-fs6g93w3 2025-09-13T00:26:44,475 Created temporary directory: /tmp/pip-ephem-wheel-cache-0gdidk1e 2025-09-13T00:26:44,532 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-13T00:26:44,534 2 location(s) to search for versions of seldompy: 2025-09-13T00:26:44,534 * https://pypi.org/simple/seldompy/ 2025-09-13T00:26:44,534 * https://www.piwheels.org/simple/seldompy/ 2025-09-13T00:26:44,535 Fetching project page and analyzing links: https://pypi.org/simple/seldompy/ 2025-09-13T00:26:44,535 Getting page https://pypi.org/simple/seldompy/ 2025-09-13T00:26:44,536 Found index url https://pypi.org/simple/ 2025-09-13T00:26:44,609 Fetched page https://pypi.org/simple/seldompy/ as application/vnd.pypi.simple.v1+json 2025-09-13T00:26:44,611 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/15/1e/e2ffb54d95eb04e2c11dd109754fe19e290c4a9ab4e2bf2a57159a503d92/SELDOMpy-0.9.8-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2025-09-13T00:26:44,611 Found link https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz (from https://pypi.org/simple/seldompy/), version: 0.9.8 2025-09-13T00:26:44,611 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/cf/fd/55148fcbd4b491569b925910992a7dbfb4cf630ee94833bee16e50f9e330/SELDOMpy-0.9.9-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2025-09-13T00:26:44,611 Found link https://files.pythonhosted.org/packages/00/23/70aa2c3b7b7acaec975e9932bd8c6f75c84068615791d7ec9e8d050db099/SELDOMpy-0.9.9.tar.gz (from https://pypi.org/simple/seldompy/), version: 0.9.9 2025-09-13T00:26:44,612 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/cb/fd/951ae4a46031bbbf8524e54e3d416b1b1485eef99d01efccc8bed8d19443/SELDOMpy-1.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2025-09-13T00:26:44,612 Found link https://files.pythonhosted.org/packages/ed/8c/d56a9dc40587ae6bfce50954f024f71864d3fe9604d0c4200cc5704f5688/SELDOMpy-1.0.tar.gz (from https://pypi.org/simple/seldompy/), version: 1.0 2025-09-13T00:26:44,612 Fetching project page and analyzing links: https://www.piwheels.org/simple/seldompy/ 2025-09-13T00:26:44,613 Getting page https://www.piwheels.org/simple/seldompy/ 2025-09-13T00:26:44,614 Found index url https://www.piwheels.org/simple/ 2025-09-13T00:26:44,703 Fetched page https://www.piwheels.org/simple/seldompy/ as text/html 2025-09-13T00:26:44,703 Skipping link: not a file: https://www.piwheels.org/simple/seldompy/ 2025-09-13T00:26:44,704 Skipping link: not a file: https://pypi.org/simple/seldompy/ 2025-09-13T00:26:44,727 Given no hashes to check 1 links for project 'seldompy': discarding no candidates 2025-09-13T00:26:44,728 Collecting seldompy==0.9.9 2025-09-13T00:26:44,729 Created temporary directory: /tmp/pip-unpack-rbk9ya8e 2025-09-13T00:26:44,869 Downloading SELDOMpy-0.9.9.tar.gz (260 kB) 2025-09-13T00:26:45,035 Added seldompy==0.9.9 from https://files.pythonhosted.org/packages/00/23/70aa2c3b7b7acaec975e9932bd8c6f75c84068615791d7ec9e8d050db099/SELDOMpy-0.9.9.tar.gz to build tracker '/tmp/pip-build-tracker-6s4ga92g' 2025-09-13T00:26:45,036 Running setup.py (path:/tmp/pip-wheel-fs6g93w3/seldompy_47eca6b0d9e944fdb7ae679cee0e0c03/setup.py) egg_info for package seldompy 2025-09-13T00:26:45,036 Created temporary directory: /tmp/pip-pip-egg-info-6slmueil 2025-09-13T00:26:45,036 Preparing metadata (setup.py): started 2025-09-13T00:26:45,037 Running command python setup.py egg_info 2025-09-13T00:26:46,094 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-13T00:26:46,094 !! 2025-09-13T00:26:46,094 ******************************************************************************** 2025-09-13T00:26:46,095 Usage of dash-separated 'description-file' will not be supported in future 2025-09-13T00:26:46,095 versions. Please use the underscore name 'description_file' instead. 2025-09-13T00:26:46,095 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-13T00:26:46,095 or your builds will no longer be supported. 2025-09-13T00:26:46,095 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-13T00:26:46,095 ******************************************************************************** 2025-09-13T00:26:46,096 !! 2025-09-13T00:26:46,096 opt = self._enforce_underscore(opt, section) 2025-09-13T00:26:46,611 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-13T00:26:46,611 !! 2025-09-13T00:26:46,611 ******************************************************************************** 2025-09-13T00:26:46,612 Usage of dash-separated 'description-file' will not be supported in future 2025-09-13T00:26:46,612 versions. Please use the underscore name 'description_file' instead. 2025-09-13T00:26:46,612 (Affected: SELDOMpy). 2025-09-13T00:26:46,612 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-13T00:26:46,612 or your builds will no longer be supported. 2025-09-13T00:26:46,612 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-13T00:26:46,612 ******************************************************************************** 2025-09-13T00:26:46,613 !! 2025-09-13T00:26:46,613 opt = self._enforce_underscore(opt, section) 2025-09-13T00:26:46,613 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-13T00:26:46,613 !! 2025-09-13T00:26:46,613 ******************************************************************************** 2025-09-13T00:26:46,613 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-13T00:26:46,614 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-13T00:26:46,614 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-13T00:26:46,614 ******************************************************************************** 2025-09-13T00:26:46,614 !! 2025-09-13T00:26:46,614 self._finalize_license_expression() 2025-09-13T00:26:46,700 running egg_info 2025-09-13T00:26:46,787 creating /tmp/pip-pip-egg-info-6slmueil/SELDOMpy.egg-info 2025-09-13T00:26:46,788 writing /tmp/pip-pip-egg-info-6slmueil/SELDOMpy.egg-info/PKG-INFO 2025-09-13T00:26:46,789 writing dependency_links to /tmp/pip-pip-egg-info-6slmueil/SELDOMpy.egg-info/dependency_links.txt 2025-09-13T00:26:46,790 writing requirements to /tmp/pip-pip-egg-info-6slmueil/SELDOMpy.egg-info/requires.txt 2025-09-13T00:26:46,791 writing top-level names to /tmp/pip-pip-egg-info-6slmueil/SELDOMpy.egg-info/top_level.txt 2025-09-13T00:26:46,791 writing manifest file '/tmp/pip-pip-egg-info-6slmueil/SELDOMpy.egg-info/SOURCES.txt' 2025-09-13T00:26:47,155 reading manifest file '/tmp/pip-pip-egg-info-6slmueil/SELDOMpy.egg-info/SOURCES.txt' 2025-09-13T00:26:47,156 reading manifest template 'MANIFEST.in' 2025-09-13T00:26:47,160 adding license file 'LICENSE.txt' 2025-09-13T00:26:47,165 writing manifest file '/tmp/pip-pip-egg-info-6slmueil/SELDOMpy.egg-info/SOURCES.txt' 2025-09-13T00:26:47,308 Preparing metadata (setup.py): finished with status 'done' 2025-09-13T00:26:47,313 Source in /tmp/pip-wheel-fs6g93w3/seldompy_47eca6b0d9e944fdb7ae679cee0e0c03 has version 0.9.9, which satisfies requirement seldompy==0.9.9 from https://files.pythonhosted.org/packages/00/23/70aa2c3b7b7acaec975e9932bd8c6f75c84068615791d7ec9e8d050db099/SELDOMpy-0.9.9.tar.gz 2025-09-13T00:26:47,313 Removed seldompy==0.9.9 from https://files.pythonhosted.org/packages/00/23/70aa2c3b7b7acaec975e9932bd8c6f75c84068615791d7ec9e8d050db099/SELDOMpy-0.9.9.tar.gz from build tracker '/tmp/pip-build-tracker-6s4ga92g' 2025-09-13T00:26:47,319 Created temporary directory: /tmp/pip-unpack-ek7vi59s 2025-09-13T00:26:47,319 Created temporary directory: /tmp/pip-unpack-qk_9jvsa 2025-09-13T00:26:47,319 Building wheels for collected packages: seldompy 2025-09-13T00:26:47,321 Created temporary directory: /tmp/pip-wheel-cav0io7i 2025-09-13T00:26:47,321 DEPRECATION: Building 'seldompy' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'seldompy'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-13T00:26:47,322 Building wheel for seldompy (setup.py): started 2025-09-13T00:26:47,323 Destination directory: /tmp/pip-wheel-cav0io7i 2025-09-13T00:26:47,323 Running command python setup.py bdist_wheel 2025-09-13T00:26:48,381 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-13T00:26:48,381 !! 2025-09-13T00:26:48,382 ******************************************************************************** 2025-09-13T00:26:48,382 Usage of dash-separated 'description-file' will not be supported in future 2025-09-13T00:26:48,382 versions. Please use the underscore name 'description_file' instead. 2025-09-13T00:26:48,382 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-13T00:26:48,382 or your builds will no longer be supported. 2025-09-13T00:26:48,383 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-13T00:26:48,383 ******************************************************************************** 2025-09-13T00:26:48,383 !! 2025-09-13T00:26:48,383 opt = self._enforce_underscore(opt, section) 2025-09-13T00:26:48,892 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-13T00:26:48,892 !! 2025-09-13T00:26:48,892 ******************************************************************************** 2025-09-13T00:26:48,893 Usage of dash-separated 'description-file' will not be supported in future 2025-09-13T00:26:48,893 versions. Please use the underscore name 'description_file' instead. 2025-09-13T00:26:48,893 (Affected: SELDOMpy). 2025-09-13T00:26:48,893 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-13T00:26:48,893 or your builds will no longer be supported. 2025-09-13T00:26:48,893 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-13T00:26:48,893 ******************************************************************************** 2025-09-13T00:26:48,894 !! 2025-09-13T00:26:48,894 opt = self._enforce_underscore(opt, section) 2025-09-13T00:26:48,894 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-13T00:26:48,894 !! 2025-09-13T00:26:48,894 ******************************************************************************** 2025-09-13T00:26:48,894 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-13T00:26:48,895 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-13T00:26:48,895 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-13T00:26:48,895 ******************************************************************************** 2025-09-13T00:26:48,895 !! 2025-09-13T00:26:48,895 self._finalize_license_expression() 2025-09-13T00:26:48,895 running bdist_wheel 2025-09-13T00:26:49,312 running build 2025-09-13T00:26:49,312 running build_py 2025-09-13T00:26:49,397 creating build/lib.linux-armv7l-cpython-313/SELDOMpy 2025-09-13T00:26:49,398 copying SELDOMpy/__init__.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy 2025-09-13T00:26:49,399 creating build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,399 copying SELDOMpy/src/__init__.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,400 running egg_info 2025-09-13T00:26:49,483 writing SELDOMpy.egg-info/PKG-INFO 2025-09-13T00:26:49,484 writing dependency_links to SELDOMpy.egg-info/dependency_links.txt 2025-09-13T00:26:49,485 writing requirements to SELDOMpy.egg-info/requires.txt 2025-09-13T00:26:49,485 writing top-level names to SELDOMpy.egg-info/top_level.txt 2025-09-13T00:26:49,572 reading manifest file 'SELDOMpy.egg-info/SOURCES.txt' 2025-09-13T00:26:49,582 reading manifest template 'MANIFEST.in' 2025-09-13T00:26:49,586 adding license file 'LICENSE.txt' 2025-09-13T00:26:49,594 writing manifest file 'SELDOMpy.egg-info/SOURCES.txt' 2025-09-13T00:26:49,595 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SELDOMpy.examples.MAPK' is absent from the `packages` configuration. 2025-09-13T00:26:49,595 !! 2025-09-13T00:26:49,595 ******************************************************************************** 2025-09-13T00:26:49,596 ############################ 2025-09-13T00:26:49,596 # Package would be ignored # 2025-09-13T00:26:49,596 ############################ 2025-09-13T00:26:49,596 Python recognizes 'SELDOMpy.examples.MAPK' as an importable package[^1], 2025-09-13T00:26:49,596 but it is absent from setuptools' `packages` configuration. 2025-09-13T00:26:49,596 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-13T00:26:49,596 package, please make sure that 'SELDOMpy.examples.MAPK' is explicitly added 2025-09-13T00:26:49,596 to the `packages` configuration field. 2025-09-13T00:26:49,596 Alternatively, you can also rely on setuptools' discovery methods 2025-09-13T00:26:49,596 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-13T00:26:49,597 instead of `find_packages(...)`/`find:`). 2025-09-13T00:26:49,597 You can read more about "package discovery" on setuptools documentation page: 2025-09-13T00:26:49,597 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-13T00:26:49,597 If you don't want 'SELDOMpy.examples.MAPK' to be distributed and are 2025-09-13T00:26:49,597 already explicitly excluding 'SELDOMpy.examples.MAPK' via 2025-09-13T00:26:49,597 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-13T00:26:49,597 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-13T00:26:49,597 combination with a more fine grained `package-data` configuration. 2025-09-13T00:26:49,598 You can read more about "package data files" on setuptools documentation page: 2025-09-13T00:26:49,598 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-13T00:26:49,598 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-13T00:26:49,598 even if it does not contain any `.py` files. 2025-09-13T00:26:49,598 On the other hand, currently there is no concept of package data 2025-09-13T00:26:49,598 directory, all directories are treated like packages. 2025-09-13T00:26:49,598 ******************************************************************************** 2025-09-13T00:26:49,599 !! 2025-09-13T00:26:49,599 check.warn(importable) 2025-09-13T00:26:49,599 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SELDOMpy.examples.SP' is absent from the `packages` configuration. 2025-09-13T00:26:49,599 !! 2025-09-13T00:26:49,599 ******************************************************************************** 2025-09-13T00:26:49,599 ############################ 2025-09-13T00:26:49,599 # Package would be ignored # 2025-09-13T00:26:49,599 ############################ 2025-09-13T00:26:49,599 Python recognizes 'SELDOMpy.examples.SP' as an importable package[^1], 2025-09-13T00:26:49,599 but it is absent from setuptools' `packages` configuration. 2025-09-13T00:26:49,600 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-13T00:26:49,600 package, please make sure that 'SELDOMpy.examples.SP' is explicitly added 2025-09-13T00:26:49,600 to the `packages` configuration field. 2025-09-13T00:26:49,600 Alternatively, you can also rely on setuptools' discovery methods 2025-09-13T00:26:49,600 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-13T00:26:49,600 instead of `find_packages(...)`/`find:`). 2025-09-13T00:26:49,600 You can read more about "package discovery" on setuptools documentation page: 2025-09-13T00:26:49,600 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-13T00:26:49,601 If you don't want 'SELDOMpy.examples.SP' to be distributed and are 2025-09-13T00:26:49,601 already explicitly excluding 'SELDOMpy.examples.SP' via 2025-09-13T00:26:49,601 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-13T00:26:49,601 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-13T00:26:49,601 combination with a more fine grained `package-data` configuration. 2025-09-13T00:26:49,601 You can read more about "package data files" on setuptools documentation page: 2025-09-13T00:26:49,601 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-13T00:26:49,602 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-13T00:26:49,602 even if it does not contain any `.py` files. 2025-09-13T00:26:49,602 On the other hand, currently there is no concept of package data 2025-09-13T00:26:49,602 directory, all directories are treated like packages. 2025-09-13T00:26:49,602 ******************************************************************************** 2025-09-13T00:26:49,602 !! 2025-09-13T00:26:49,602 check.warn(importable) 2025-09-13T00:26:49,603 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SELDOMpy.functions' is absent from the `packages` configuration. 2025-09-13T00:26:49,603 !! 2025-09-13T00:26:49,603 ******************************************************************************** 2025-09-13T00:26:49,603 ############################ 2025-09-13T00:26:49,603 # Package would be ignored # 2025-09-13T00:26:49,603 ############################ 2025-09-13T00:26:49,603 Python recognizes 'SELDOMpy.functions' as an importable package[^1], 2025-09-13T00:26:49,603 but it is absent from setuptools' `packages` configuration. 2025-09-13T00:26:49,604 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-13T00:26:49,604 package, please make sure that 'SELDOMpy.functions' is explicitly added 2025-09-13T00:26:49,604 to the `packages` configuration field. 2025-09-13T00:26:49,604 Alternatively, you can also rely on setuptools' discovery methods 2025-09-13T00:26:49,604 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-13T00:26:49,604 instead of `find_packages(...)`/`find:`). 2025-09-13T00:26:49,604 You can read more about "package discovery" on setuptools documentation page: 2025-09-13T00:26:49,605 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-13T00:26:49,605 If you don't want 'SELDOMpy.functions' to be distributed and are 2025-09-13T00:26:49,605 already explicitly excluding 'SELDOMpy.functions' via 2025-09-13T00:26:49,605 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-13T00:26:49,605 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-13T00:26:49,605 combination with a more fine grained `package-data` configuration. 2025-09-13T00:26:49,605 You can read more about "package data files" on setuptools documentation page: 2025-09-13T00:26:49,606 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-13T00:26:49,606 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-13T00:26:49,606 even if it does not contain any `.py` files. 2025-09-13T00:26:49,606 On the other hand, currently there is no concept of package data 2025-09-13T00:26:49,606 directory, all directories are treated like packages. 2025-09-13T00:26:49,607 ******************************************************************************** 2025-09-13T00:26:49,607 !! 2025-09-13T00:26:49,607 check.warn(importable) 2025-09-13T00:26:49,607 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SELDOMpy.src.include.include_amigo' is absent from the `packages` configuration. 2025-09-13T00:26:49,607 !! 2025-09-13T00:26:49,607 ******************************************************************************** 2025-09-13T00:26:49,608 ############################ 2025-09-13T00:26:49,608 # Package would be ignored # 2025-09-13T00:26:49,608 ############################ 2025-09-13T00:26:49,608 Python recognizes 'SELDOMpy.src.include.include_amigo' as an importable package[^1], 2025-09-13T00:26:49,608 but it is absent from setuptools' `packages` configuration. 2025-09-13T00:26:49,608 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-13T00:26:49,608 package, please make sure that 'SELDOMpy.src.include.include_amigo' is explicitly added 2025-09-13T00:26:49,608 to the `packages` configuration field. 2025-09-13T00:26:49,609 Alternatively, you can also rely on setuptools' discovery methods 2025-09-13T00:26:49,609 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-13T00:26:49,609 instead of `find_packages(...)`/`find:`). 2025-09-13T00:26:49,609 You can read more about "package discovery" on setuptools documentation page: 2025-09-13T00:26:49,609 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-13T00:26:49,610 If you don't want 'SELDOMpy.src.include.include_amigo' to be distributed and are 2025-09-13T00:26:49,610 already explicitly excluding 'SELDOMpy.src.include.include_amigo' via 2025-09-13T00:26:49,610 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-13T00:26:49,610 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-13T00:26:49,610 combination with a more fine grained `package-data` configuration. 2025-09-13T00:26:49,610 You can read more about "package data files" on setuptools documentation page: 2025-09-13T00:26:49,611 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-13T00:26:49,611 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-13T00:26:49,611 even if it does not contain any `.py` files. 2025-09-13T00:26:49,611 On the other hand, currently there is no concept of package data 2025-09-13T00:26:49,611 directory, all directories are treated like packages. 2025-09-13T00:26:49,611 ******************************************************************************** 2025-09-13T00:26:49,612 !! 2025-09-13T00:26:49,612 check.warn(importable) 2025-09-13T00:26:49,612 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SELDOMpy.src.include.include_cvodes.cvodes' is absent from the `packages` configuration. 2025-09-13T00:26:49,612 !! 2025-09-13T00:26:49,612 ******************************************************************************** 2025-09-13T00:26:49,612 ############################ 2025-09-13T00:26:49,612 # Package would be ignored # 2025-09-13T00:26:49,613 ############################ 2025-09-13T00:26:49,613 Python recognizes 'SELDOMpy.src.include.include_cvodes.cvodes' as an importable package[^1], 2025-09-13T00:26:49,613 but it is absent from setuptools' `packages` configuration. 2025-09-13T00:26:49,613 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-13T00:26:49,613 package, please make sure that 'SELDOMpy.src.include.include_cvodes.cvodes' is explicitly added 2025-09-13T00:26:49,613 to the `packages` configuration field. 2025-09-13T00:26:49,613 Alternatively, you can also rely on setuptools' discovery methods 2025-09-13T00:26:49,614 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-13T00:26:49,614 instead of `find_packages(...)`/`find:`). 2025-09-13T00:26:49,614 You can read more about "package discovery" on setuptools documentation page: 2025-09-13T00:26:49,614 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-13T00:26:49,614 If you don't want 'SELDOMpy.src.include.include_cvodes.cvodes' to be distributed and are 2025-09-13T00:26:49,614 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.cvodes' via 2025-09-13T00:26:49,614 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-13T00:26:49,615 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-13T00:26:49,615 combination with a more fine grained `package-data` configuration. 2025-09-13T00:26:49,615 You can read more about "package data files" on setuptools documentation page: 2025-09-13T00:26:49,615 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-13T00:26:49,616 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-13T00:26:49,616 even if it does not contain any `.py` files. 2025-09-13T00:26:49,616 On the other hand, currently there is no concept of package data 2025-09-13T00:26:49,616 directory, all directories are treated like packages. 2025-09-13T00:26:49,616 ******************************************************************************** 2025-09-13T00:26:49,616 !! 2025-09-13T00:26:49,616 check.warn(importable) 2025-09-13T00:26:49,617 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SELDOMpy.src.include.include_cvodes.nvector' is absent from the `packages` configuration. 2025-09-13T00:26:49,617 !! 2025-09-13T00:26:49,617 ******************************************************************************** 2025-09-13T00:26:49,617 ############################ 2025-09-13T00:26:49,617 # Package would be ignored # 2025-09-13T00:26:49,617 ############################ 2025-09-13T00:26:49,617 Python recognizes 'SELDOMpy.src.include.include_cvodes.nvector' as an importable package[^1], 2025-09-13T00:26:49,618 but it is absent from setuptools' `packages` configuration. 2025-09-13T00:26:49,618 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-13T00:26:49,618 package, please make sure that 'SELDOMpy.src.include.include_cvodes.nvector' is explicitly added 2025-09-13T00:26:49,618 to the `packages` configuration field. 2025-09-13T00:26:49,618 Alternatively, you can also rely on setuptools' discovery methods 2025-09-13T00:26:49,618 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-13T00:26:49,618 instead of `find_packages(...)`/`find:`). 2025-09-13T00:26:49,619 You can read more about "package discovery" on setuptools documentation page: 2025-09-13T00:26:49,619 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-13T00:26:49,619 If you don't want 'SELDOMpy.src.include.include_cvodes.nvector' to be distributed and are 2025-09-13T00:26:49,619 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.nvector' via 2025-09-13T00:26:49,619 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-13T00:26:49,620 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-13T00:26:49,620 combination with a more fine grained `package-data` configuration. 2025-09-13T00:26:49,620 You can read more about "package data files" on setuptools documentation page: 2025-09-13T00:26:49,620 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-13T00:26:49,620 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-13T00:26:49,621 even if it does not contain any `.py` files. 2025-09-13T00:26:49,621 On the other hand, currently there is no concept of package data 2025-09-13T00:26:49,621 directory, all directories are treated like packages. 2025-09-13T00:26:49,621 ******************************************************************************** 2025-09-13T00:26:49,621 !! 2025-09-13T00:26:49,621 check.warn(importable) 2025-09-13T00:26:49,621 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SELDOMpy.src.include.include_cvodes.sundials' is absent from the `packages` configuration. 2025-09-13T00:26:49,621 !! 2025-09-13T00:26:49,622 ******************************************************************************** 2025-09-13T00:26:49,622 ############################ 2025-09-13T00:26:49,622 # Package would be ignored # 2025-09-13T00:26:49,622 ############################ 2025-09-13T00:26:49,622 Python recognizes 'SELDOMpy.src.include.include_cvodes.sundials' as an importable package[^1], 2025-09-13T00:26:49,622 but it is absent from setuptools' `packages` configuration. 2025-09-13T00:26:49,623 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-13T00:26:49,623 package, please make sure that 'SELDOMpy.src.include.include_cvodes.sundials' is explicitly added 2025-09-13T00:26:49,623 to the `packages` configuration field. 2025-09-13T00:26:49,623 Alternatively, you can also rely on setuptools' discovery methods 2025-09-13T00:26:49,623 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-13T00:26:49,623 instead of `find_packages(...)`/`find:`). 2025-09-13T00:26:49,623 You can read more about "package discovery" on setuptools documentation page: 2025-09-13T00:26:49,624 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-13T00:26:49,624 If you don't want 'SELDOMpy.src.include.include_cvodes.sundials' to be distributed and are 2025-09-13T00:26:49,624 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.sundials' via 2025-09-13T00:26:49,624 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-13T00:26:49,624 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-13T00:26:49,624 combination with a more fine grained `package-data` configuration. 2025-09-13T00:26:49,625 You can read more about "package data files" on setuptools documentation page: 2025-09-13T00:26:49,625 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-13T00:26:49,625 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-13T00:26:49,625 even if it does not contain any `.py` files. 2025-09-13T00:26:49,625 On the other hand, currently there is no concept of package data 2025-09-13T00:26:49,626 directory, all directories are treated like packages. 2025-09-13T00:26:49,626 ******************************************************************************** 2025-09-13T00:26:49,626 !! 2025-09-13T00:26:49,626 check.warn(importable) 2025-09-13T00:26:49,626 creating build/lib.linux-armv7l-cpython-313/SELDOMpy/examples/MAPK 2025-09-13T00:26:49,626 copying SELDOMpy/examples/MAPK/MAPK.xlsx -> build/lib.linux-armv7l-cpython-313/SELDOMpy/examples/MAPK 2025-09-13T00:26:49,626 copying SELDOMpy/examples/MAPK/MAPK_training_and_reduce.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/examples/MAPK 2025-09-13T00:26:49,626 copying SELDOMpy/examples/MAPK/MAPK_training_and_reduce_pyPESTO.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/examples/MAPK 2025-09-13T00:26:49,627 creating build/lib.linux-armv7l-cpython-313/SELDOMpy/examples/SP 2025-09-13T00:26:49,627 copying SELDOMpy/examples/SP/SP.xlsx -> build/lib.linux-armv7l-cpython-313/SELDOMpy/examples/SP 2025-09-13T00:26:49,627 copying SELDOMpy/examples/SP/SP_training_and_reduce.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/examples/SP 2025-09-13T00:26:49,627 copying SELDOMpy/examples/SP/SP_training_and_reduce_pyPESTO.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/examples/SP 2025-09-13T00:26:49,627 creating build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-13T00:26:49,627 copying SELDOMpy/functions/buildmim.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-13T00:26:49,627 copying SELDOMpy/functions/extras.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-13T00:26:49,627 copying SELDOMpy/functions/gen_exps.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-13T00:26:49,628 copying SELDOMpy/functions/getLBODEmodel.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-13T00:26:49,628 copying SELDOMpy/functions/getRandomLBODEmodel.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-13T00:26:49,628 copying SELDOMpy/functions/optimization.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-13T00:26:49,628 copying SELDOMpy/functions/plot_results.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-13T00:26:49,628 copying SELDOMpy/functions/reduce_fun.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-13T00:26:49,628 copying SELDOMpy/functions/simulate_logic_based_ode.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-13T00:26:49,628 copying SELDOMpy/functions/simulate_logic_based_ode_obs.py -> build/lib.linux-armv7l-cpython-313/SELDOMpy/functions 2025-09-13T00:26:49,629 copying SELDOMpy/src/AMIGO_model.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,629 copying SELDOMpy/src/AMIGO_model_stats.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,629 copying SELDOMpy/src/AMIGO_problem.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,629 copying SELDOMpy/src/CNOStructure.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,629 copying SELDOMpy/src/anODEModel.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,629 copying SELDOMpy/src/cvodea.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,629 copying SELDOMpy/src/cvodea_io.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,629 copying SELDOMpy/src/cvodes.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,629 copying SELDOMpy/src/cvodes_band.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,630 copying SELDOMpy/src/cvodes_bandpre.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,630 copying SELDOMpy/src/cvodes_bandpre_impl.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,630 copying SELDOMpy/src/cvodes_bbdpre.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,630 copying SELDOMpy/src/cvodes_bbdpre_impl.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,630 copying SELDOMpy/src/cvodes_dense.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,630 copying SELDOMpy/src/cvodes_diag.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,630 copying SELDOMpy/src/cvodes_diag_impl.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,631 copying SELDOMpy/src/cvodes_direct.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,631 copying SELDOMpy/src/cvodes_direct_impl.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,632 copying SELDOMpy/src/cvodes_impl.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,633 copying SELDOMpy/src/cvodes_io.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,634 copying SELDOMpy/src/cvodes_spbcgs.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,635 copying SELDOMpy/src/cvodes_spgmr.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,635 copying SELDOMpy/src/cvodes_spils.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,636 copying SELDOMpy/src/cvodes_spils_impl.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,637 copying SELDOMpy/src/cvodes_sptfqmr.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,638 copying SELDOMpy/src/decimal2binary.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,638 copying SELDOMpy/src/dhc.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,639 copying SELDOMpy/src/findStates.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,640 copying SELDOMpy/src/fnvector_serial.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,640 copying SELDOMpy/src/fnvector_serial.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,641 copying SELDOMpy/src/getAdjacencyMatrix.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,642 copying SELDOMpy/src/getNumBits.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,642 copying SELDOMpy/src/getNumInputs.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,643 copying SELDOMpy/src/getStateIndex.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,644 copying SELDOMpy/src/getTruthTables.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,645 copying SELDOMpy/src/get_count_bits.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,645 copying SELDOMpy/src/get_input_index.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,646 copying SELDOMpy/src/get_support_truth_tables.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,646 copying SELDOMpy/src/get_truth_tables_index.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,647 copying SELDOMpy/src/hill_function.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,648 copying SELDOMpy/src/linear_transfer_function.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,648 copying SELDOMpy/src/normHill.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,649 copying SELDOMpy/src/nvector_serial.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,650 copying SELDOMpy/src/printAdjMat.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,651 copying SELDOMpy/src/printInterMat.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,651 copying SELDOMpy/src/printNminiTerms.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,652 copying SELDOMpy/src/printTruthTables.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,653 copying SELDOMpy/src/sim_logic_ode.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,653 copying SELDOMpy/src/simulate_amigo_model.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,654 copying SELDOMpy/src/sundials_band.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,655 copying SELDOMpy/src/sundials_dense.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,655 copying SELDOMpy/src/sundials_direct.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,656 copying SELDOMpy/src/sundials_iterative.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,657 copying SELDOMpy/src/sundials_math.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,658 copying SELDOMpy/src/sundials_nvector.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,658 copying SELDOMpy/src/sundials_spbcgs.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,659 copying SELDOMpy/src/sundials_spgmr.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,660 copying SELDOMpy/src/sundials_sptfqmr.c -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:49,660 creating build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_amigo 2025-09-13T00:26:49,661 copying SELDOMpy/src/include/include_amigo/AMIGO_hdf5.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_amigo 2025-09-13T00:26:49,661 copying SELDOMpy/src/include/include_amigo/AMIGO_model.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_amigo 2025-09-13T00:26:49,662 copying SELDOMpy/src/include/include_amigo/AMIGO_model_stats.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_amigo 2025-09-13T00:26:49,663 copying SELDOMpy/src/include/include_amigo/AMIGO_problem.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_amigo 2025-09-13T00:26:49,663 copying SELDOMpy/src/include/include_amigo/amigoJAC.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_amigo 2025-09-13T00:26:49,664 copying SELDOMpy/src/include/include_amigo/amigoRHS.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_amigo 2025-09-13T00:26:49,665 copying SELDOMpy/src/include/include_amigo/amigoSensRHS.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_amigo 2025-09-13T00:26:49,665 copying SELDOMpy/src/include/include_amigo/simulate_amigo_model.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_amigo 2025-09-13T00:26:49,666 creating build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-13T00:26:49,666 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-13T00:26:49,667 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_band.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-13T00:26:49,668 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_bandpre.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-13T00:26:49,669 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_bbdpre.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-13T00:26:49,670 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_dense.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-13T00:26:49,670 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_diag.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-13T00:26:49,671 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_direct.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-13T00:26:49,672 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_lapack.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-13T00:26:49,672 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spbcgs.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-13T00:26:49,673 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spgmr.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-13T00:26:49,674 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spils.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-13T00:26:49,674 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_sptfqmr.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/cvodes 2025-09-13T00:26:49,675 creating build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/nvector 2025-09-13T00:26:49,675 copying SELDOMpy/src/include/include_cvodes/nvector/nvector_serial.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/nvector 2025-09-13T00:26:49,676 creating build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-13T00:26:49,676 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_band.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-13T00:26:49,677 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_config.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-13T00:26:49,678 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_dense.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-13T00:26:49,679 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_direct.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-13T00:26:49,679 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_fnvector.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-13T00:26:49,680 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_iterative.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-13T00:26:49,681 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_lapack.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-13T00:26:49,682 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_math.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-13T00:26:49,683 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_nvector.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-13T00:26:49,683 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_spbcgs.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-13T00:26:49,684 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_spgmr.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-13T00:26:49,685 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_sptfqmr.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-13T00:26:49,686 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_types.h -> build/lib.linux-armv7l-cpython-313/SELDOMpy/src/include/include_cvodes/sundials 2025-09-13T00:26:49,687 running build_ext 2025-09-13T00:26:50,054 building 'hello' extension 2025-09-13T00:26:50,064 creating build/temp.linux-armv7l-cpython-313/SELDOMpy/src 2025-09-13T00:26:50,068 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/AMIGO_model.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/AMIGO_model.o 2025-09-13T00:26:50,218 SELDOMpy/src/AMIGO_model.c: In function ‘simulate_AMIGO_model’: 2025-09-13T00:26:50,218 SELDOMpy/src/AMIGO_model.c:225:1: warning: control reaches end of non-void function [-Wreturn-type] 2025-09-13T00:26:50,218 225 | }; 2025-09-13T00:26:50,218 | ^ 2025-09-13T00:26:50,812 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/AMIGO_model_stats.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/AMIGO_model_stats.o 2025-09-13T00:26:50,861 SELDOMpy/src/AMIGO_model_stats.c:1:9: warning: #pragma once in main file 2025-09-13T00:26:50,861 1 | #pragma once 2025-09-13T00:26:50,861 | ^~~~ 2025-09-13T00:26:50,928 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/AMIGO_problem.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/AMIGO_problem.o 2025-09-13T00:26:51,067 SELDOMpy/src/AMIGO_problem.c: In function ‘eval_AMIGO_problem_LSQ’: 2025-09-13T00:26:51,067 SELDOMpy/src/AMIGO_problem.c:132: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2025-09-13T00:26:51,067 132 | #pragma omp parallel num_threads(amigo_problem->nthreads) 2025-09-13T00:26:51,067 SELDOMpy/src/AMIGO_problem.c:134: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2025-09-13T00:26:51,068 134 | #pragma omp for schedule(dynamic,1) private(i) 2025-09-13T00:26:51,068 SELDOMpy/src/AMIGO_problem.c:127:13: warning: unused variable ‘counter’ [-Wunused-variable] 2025-09-13T00:26:51,069 127 | int counter=0; 2025-09-13T00:26:51,069 | ^~~~~~~ 2025-09-13T00:26:51,069 SELDOMpy/src/AMIGO_problem.c:126:22: warning: unused variable ‘n_exps’ [-Wunused-variable] 2025-09-13T00:26:51,069 126 | int i, j, k, n_exps, n_times, n_obs; 2025-09-13T00:26:51,069 | ^~~~~~ 2025-09-13T00:26:51,069 SELDOMpy/src/AMIGO_problem.c: In function ‘eval_AMIGO_problem_LLK’: 2025-09-13T00:26:51,069 SELDOMpy/src/AMIGO_problem.c:185: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2025-09-13T00:26:51,070 185 | #pragma omp parallel num_threads(amigo_problem->nthreads) 2025-09-13T00:26:51,070 SELDOMpy/src/AMIGO_problem.c:187: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2025-09-13T00:26:51,070 187 | #pragma omp for schedule(dynamic,1) private(i,flag) 2025-09-13T00:26:51,070 SELDOMpy/src/AMIGO_problem.c:182:13: warning: unused variable ‘counter’ [-Wunused-variable] 2025-09-13T00:26:51,070 182 | int counter=0; 2025-09-13T00:26:51,070 | ^~~~~~~ 2025-09-13T00:26:51,070 SELDOMpy/src/AMIGO_problem.c:181:53: warning: variable ‘flag’ set but not used [-Wunused-but-set-variable] 2025-09-13T00:26:51,071 181 | int i, j, k, n_exps, n_times, n_obs,flag; 2025-09-13T00:26:51,071 | ^~~~ 2025-09-13T00:26:51,071 SELDOMpy/src/AMIGO_problem.c:181:30: warning: unused variable ‘n_exps’ [-Wunused-variable] 2025-09-13T00:26:51,071 181 | int i, j, k, n_exps, n_times, n_obs,flag; 2025-09-13T00:26:51,071 | ^~~~~~ 2025-09-13T00:26:51,528 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/anODEModel.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/anODEModel.o 2025-09-13T00:26:51,660 SELDOMpy/src/anODEModel.c: In function ‘amigoRHS’: 2025-09-13T00:26:51,660 SELDOMpy/src/anODEModel.c:23:9: warning: unused variable ‘countBin’ [-Wunused-variable] 2025-09-13T00:26:51,661 23 | int countBin=0; 2025-09-13T00:26:51,661 | ^~~~~~~~ 2025-09-13T00:26:51,662 SELDOMpy/src/anODEModel.c: In function ‘amigo_Y_at_tcon’: 2025-09-13T00:26:51,662 SELDOMpy/src/anODEModel.c:118:18: warning: unused variable ‘amigo_model’ [-Wunused-variable] 2025-09-13T00:26:51,662 118 | AMIGO_model* amigo_model=(AMIGO_model*)data; 2025-09-13T00:26:51,663 | ^~~~~~~~~~~ 2025-09-13T00:26:51,835 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodea.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodea.o 2025-09-13T00:26:51,994 SELDOMpy/src/cvodea.c: In function ‘CVAhermiteStorePnt’: 2025-09-13T00:26:51,996 SELDOMpy/src/cvodea.c:2461:11: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 2025-09-13T00:26:51,996 2461 | int is, retval; 2025-09-13T00:26:51,996 | ^~~~~~ 2025-09-13T00:26:52,008 SELDOMpy/src/cvodea.c: In function ‘CVArhsQ’: 2025-09-13T00:26:52,010 SELDOMpy/src/cvodea.c:2957:7: warning: variable ‘flag’ set but not used [-Wunused-but-set-variable] 2025-09-13T00:26:52,011 2957 | int flag, retval; 2025-09-13T00:26:52,011 | ^~~~ 2025-09-13T00:26:52,627 SELDOMpy/src/cvodea.c: In function ‘CVAhermiteGetY’: 2025-09-13T00:26:52,629 SELDOMpy/src/cvodea.c:2523:13: warning: ‘yS0’ may be used uninitialized [-Wmaybe-uninitialized] 2025-09-13T00:26:52,629 2523 | N_Vector *yS0, *ySd0, *yS1, *ySd1; 2025-09-13T00:26:52,629 | ^~~ 2025-09-13T00:26:52,631 SELDOMpy/src/cvodea.c:2523:19: warning: ‘ySd0’ may be used uninitialized [-Wmaybe-uninitialized] 2025-09-13T00:26:52,631 2523 | N_Vector *yS0, *ySd0, *yS1, *ySd1; 2025-09-13T00:26:52,631 | ^~~~ 2025-09-13T00:26:54,639 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodea_io.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodea_io.o 2025-09-13T00:26:55,181 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes.o 2025-09-13T00:26:55,382 SELDOMpy/src/cvodes.c: In function ‘cvHin’: 2025-09-13T00:26:55,385 SELDOMpy/src/cvodes.c:4328:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2025-09-13T00:26:55,386 4328 | if (count1 <= 2) 2025-09-13T00:26:55,386 | ^~ 2025-09-13T00:26:55,388 SELDOMpy/src/cvodes.c:4330:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2025-09-13T00:26:55,389 4330 | if (retval == QRHSFUNC_RECVR) return(CV_REPTD_QRHSFUNC_ERR); 2025-09-13T00:26:55,389 | ^~ 2025-09-13T00:26:55,720 SELDOMpy/src/cvodes.c: In function ‘cvQuadSensRhs1InternalDQ’: 2025-09-13T00:26:55,727 SELDOMpy/src/cvodes.c:8850:20: warning: variable ‘rDeltap’ set but not used [-Wunused-but-set-variable] 2025-09-13T00:26:55,727 8850 | realtype Deltap, rDeltap; 2025-09-13T00:26:55,727 | ^~~~~~~ 2025-09-13T00:27:03,862 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_band.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_band.o 2025-09-13T00:27:04,210 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_bandpre.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_bandpre.o 2025-09-13T00:27:04,679 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_bbdpre.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_bbdpre.o 2025-09-13T00:27:05,287 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_dense.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_dense.o 2025-09-13T00:27:05,611 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_diag.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_diag.o 2025-09-13T00:27:05,984 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_direct.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_direct.o 2025-09-13T00:27:06,576 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_io.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_io.o 2025-09-13T00:27:07,795 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_spbcgs.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_spbcgs.o 2025-09-13T00:27:08,185 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_spgmr.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_spgmr.o 2025-09-13T00:27:08,575 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_spils.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_spils.o 2025-09-13T00:27:09,310 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/cvodes_sptfqmr.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/cvodes_sptfqmr.o 2025-09-13T00:27:09,698 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/decimal2binary.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/decimal2binary.o 2025-09-13T00:27:09,834 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c SELDOMpy/src/dhc.c -o build/temp.linux-armv7l-cpython-313/SELDOMpy/src/dhc.o 2025-09-13T00:27:09,954 SELDOMpy/src/dhc.c: In function ‘dhc’: 2025-09-13T00:27:09,954 SELDOMpy/src/dhc.c:102:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2025-09-13T00:27:09,954 102 | for(i=0; iamigo_model_stats->error_flag=NULL; 2025-09-13T00:27:15,982 | ^ 2025-09-13T00:27:15,984 SELDOMpy/src/simulate_amigo_model.c: In function ‘set_simulation_stats’: 2025-09-13T00:27:15,985 SELDOMpy/src/simulate_amigo_model.c:302:34: warning: unused variable ‘nps’ [-Wunused-variable] 2025-09-13T00:27:15,985 302 | long int nli, ncfl, npe, nps; 2025-09-13T00:27:15,985 | ^~~ 2025-09-13T00:27:15,985 SELDOMpy/src/simulate_amigo_model.c:302:29: warning: unused variable ‘npe’ [-Wunused-variable] 2025-09-13T00:27:15,985 302 | long int nli, ncfl, npe, nps; 2025-09-13T00:27:15,986 | ^~~ 2025-09-13T00:27:15,986 SELDOMpy/src/simulate_amigo_model.c:302:23: warning: unused variable ‘ncfl’ [-Wunused-variable] 2025-09-13T00:27:15,986 302 | long int nli, ncfl, npe, nps; 2025-09-13T00:27:15,986 | ^~~~ 2025-09-13T00:27:15,987 SELDOMpy/src/simulate_amigo_model.c:302:18: warning: unused variable ‘nli’ [-Wunused-variable] 2025-09-13T00:27:15,987 302 | long int nli, ncfl, npe, nps; 2025-09-13T00:27:15,987 | ^~~ 2025-09-13T00:27:16,002 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-13T00:27:16,194 ERROR: python setup.py bdist_wheel exited with 1 2025-09-13T00:27:16,207 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-13T00:27:16,207 exec(compile('"'"''"'"''"'"' 2025-09-13T00:27:16,207 # This is -- a caller that pip uses to run setup.py 2025-09-13T00:27:16,207 # 2025-09-13T00:27:16,207 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-13T00:27:16,207 # import from `distutils.core` to work with newer packaging standards. 2025-09-13T00:27:16,207 # - It provides a clear error message when setuptools is not installed. 2025-09-13T00:27:16,207 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-13T00:27:16,207 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-13T00:27:16,207 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-13T00:27:16,207 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-13T00:27:16,207 import os, sys, tokenize, traceback 2025-09-13T00:27:16,207 2025-09-13T00:27:16,207 try: 2025-09-13T00:27:16,207 import setuptools 2025-09-13T00:27:16,207 except ImportError: 2025-09-13T00:27:16,207 print( 2025-09-13T00:27:16,207 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-13T00:27:16,207 "the build environment with exception:", 2025-09-13T00:27:16,207 file=sys.stderr, 2025-09-13T00:27:16,207 ) 2025-09-13T00:27:16,207 traceback.print_exc() 2025-09-13T00:27:16,207 sys.exit(1) 2025-09-13T00:27:16,207 2025-09-13T00:27:16,207 __file__ = %r 2025-09-13T00:27:16,207 sys.argv[0] = __file__ 2025-09-13T00:27:16,207 2025-09-13T00:27:16,207 if os.path.exists(__file__): 2025-09-13T00:27:16,207 filename = __file__ 2025-09-13T00:27:16,207 with tokenize.open(__file__) as f: 2025-09-13T00:27:16,207 setup_py_code = f.read() 2025-09-13T00:27:16,207 else: 2025-09-13T00:27:16,207 filename = "" 2025-09-13T00:27:16,207 setup_py_code = "from setuptools import setup; setup()" 2025-09-13T00:27:16,207 2025-09-13T00:27:16,207 exec(compile(setup_py_code, filename, "exec")) 2025-09-13T00:27:16,207 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-fs6g93w3/seldompy_47eca6b0d9e944fdb7ae679cee0e0c03/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-cav0io7i[/] 2025-09-13T00:27:16,207 [bold magenta]cwd[/]: /tmp/pip-wheel-fs6g93w3/seldompy_47eca6b0d9e944fdb7ae679cee0e0c03/ 2025-09-13T00:27:16,207 Building wheel for seldompy (setup.py): finished with status 'error' 2025-09-13T00:27:16,208 ERROR: Failed building wheel for seldompy 2025-09-13T00:27:16,209 Running setup.py clean for seldompy 2025-09-13T00:27:16,210 Running command python setup.py clean 2025-09-13T00:27:17,157 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-13T00:27:17,158 !! 2025-09-13T00:27:17,158 ******************************************************************************** 2025-09-13T00:27:17,158 Usage of dash-separated 'description-file' will not be supported in future 2025-09-13T00:27:17,158 versions. Please use the underscore name 'description_file' instead. 2025-09-13T00:27:17,158 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-13T00:27:17,158 or your builds will no longer be supported. 2025-09-13T00:27:17,159 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-13T00:27:17,159 ******************************************************************************** 2025-09-13T00:27:17,159 !! 2025-09-13T00:27:17,159 opt = self._enforce_underscore(opt, section) 2025-09-13T00:27:17,669 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-09-13T00:27:17,670 !! 2025-09-13T00:27:17,670 ******************************************************************************** 2025-09-13T00:27:17,670 Usage of dash-separated 'description-file' will not be supported in future 2025-09-13T00:27:17,670 versions. Please use the underscore name 'description_file' instead. 2025-09-13T00:27:17,670 (Affected: SELDOMpy). 2025-09-13T00:27:17,670 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-09-13T00:27:17,671 or your builds will no longer be supported. 2025-09-13T00:27:17,671 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-09-13T00:27:17,671 ******************************************************************************** 2025-09-13T00:27:17,671 !! 2025-09-13T00:27:17,671 opt = self._enforce_underscore(opt, section) 2025-09-13T00:27:17,671 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-13T00:27:17,671 !! 2025-09-13T00:27:17,672 ******************************************************************************** 2025-09-13T00:27:17,672 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-13T00:27:17,672 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-09-13T00:27:17,672 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-13T00:27:17,672 ******************************************************************************** 2025-09-13T00:27:17,672 !! 2025-09-13T00:27:17,673 self._finalize_license_expression() 2025-09-13T00:27:17,758 running clean 2025-09-13T00:27:17,931 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-13T00:27:17,933 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-13T00:27:17,937 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-13T00:27:17,937 'build/scripts-3.13' does not exist -- can't clean it 2025-09-13T00:27:17,938 removing 'build' 2025-09-13T00:27:18,095 Failed to build seldompy 2025-09-13T00:27:18,096 ERROR: Failed to build one or more wheels 2025-09-13T00:27:18,097 Exception information: 2025-09-13T00:27:18,097 Traceback (most recent call last): 2025-09-13T00:27:18,097 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-13T00:27:18,097 status = _inner_run() 2025-09-13T00:27:18,097 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-13T00:27:18,097 return self.run(options, args) 2025-09-13T00:27:18,097 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-13T00:27:18,097 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-13T00:27:18,097 return func(self, options, args) 2025-09-13T00:27:18,097 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-13T00:27:18,097 raise CommandError("Failed to build one or more wheels") 2025-09-13T00:27:18,097 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-13T00:27:18,102 Removed build tracker: '/tmp/pip-build-tracker-6s4ga92g'