2025-09-13T01:26:57,012 Created temporary directory: /tmp/pip-build-tracker-60u1o7j_ 2025-09-13T01:26:57,013 Initialized build tracking at /tmp/pip-build-tracker-60u1o7j_ 2025-09-13T01:26:57,013 Created build tracker: /tmp/pip-build-tracker-60u1o7j_ 2025-09-13T01:26:57,014 Entered build tracker: /tmp/pip-build-tracker-60u1o7j_ 2025-09-13T01:26:57,014 Created temporary directory: /tmp/pip-wheel-s9_p1dp7 2025-09-13T01:26:57,017 Created temporary directory: /tmp/pip-ephem-wheel-cache-hu5yt7c4 2025-09-13T01:26:57,075 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-13T01:26:57,078 2 location(s) to search for versions of sieveai: 2025-09-13T01:26:57,078 * https://pypi.org/simple/sieveai/ 2025-09-13T01:26:57,078 * https://www.piwheels.org/simple/sieveai/ 2025-09-13T01:26:57,078 Fetching project page and analyzing links: https://pypi.org/simple/sieveai/ 2025-09-13T01:26:57,078 Getting page https://pypi.org/simple/sieveai/ 2025-09-13T01:26:57,080 Found index url https://pypi.org/simple/ 2025-09-13T01:26:57,227 Fetched page https://pypi.org/simple/sieveai/ as application/vnd.pypi.simple.v1+json 2025-09-13T01:26:57,228 Found link https://files.pythonhosted.org/packages/53/fb/31727fc4b169b880f83a2a6665e389bbbb64664ef2cd744a9a359b850c88/SieveAI-0.5.2023090513.tar.gz (from https://pypi.org/simple/sieveai/), version: 0.5.2023090513 2025-09-13T01:26:57,228 Found link https://files.pythonhosted.org/packages/9a/c4/8d46d57039b31e0f9e2fbf063ff0c2634f93f06d00861c7728d93b17dc5c/SieveAI-0.6.20231212.tar.gz (from https://pypi.org/simple/sieveai/), version: 0.6.20231212 2025-09-13T01:26:57,229 Skipping link: No binaries permitted for sieveai: https://files.pythonhosted.org/packages/1a/78/c5deacbf95233a036ea0148bec65de85f6e055964f4da870444d8ab53214/SieveAI-0.7.1-py3-none-any.whl (from https://pypi.org/simple/sieveai/) (requires-python:>=3.8) 2025-09-13T01:26:57,229 Found link https://files.pythonhosted.org/packages/39/5f/158deaa2652ea2a20b149065b1693e198b357f6b8d59797930810aa80362/SieveAI-0.7.1.tar.gz (from https://pypi.org/simple/sieveai/) (requires-python:>=3.8), version: 0.7.1 2025-09-13T01:26:57,230 Fetching project page and analyzing links: https://www.piwheels.org/simple/sieveai/ 2025-09-13T01:26:57,230 Getting page https://www.piwheels.org/simple/sieveai/ 2025-09-13T01:26:57,231 Found index url https://www.piwheels.org/simple/ 2025-09-13T01:26:57,321 Fetched page https://www.piwheels.org/simple/sieveai/ as text/html 2025-09-13T01:26:57,322 Skipping link: No binaries permitted for sieveai: https://archive1.piwheels.org/simple/sieveai/SieveAI-0.7.1-py3-none-any.whl#sha256=a74c677ebdbba6d629d373c26a09825af5e18ca57fa99bcd663a48da265a7bb7 (from https://www.piwheels.org/simple/sieveai/) (requires-python:>=3.8) 2025-09-13T01:26:57,322 Skipping link: not a file: https://www.piwheels.org/simple/sieveai/ 2025-09-13T01:26:57,322 Skipping link: not a file: https://pypi.org/simple/sieveai/ 2025-09-13T01:26:57,345 Given no hashes to check 1 links for project 'sieveai': discarding no candidates 2025-09-13T01:26:57,346 Collecting sieveai==0.5.2023090513 2025-09-13T01:26:57,348 Created temporary directory: /tmp/pip-unpack-yvfw6sfn 2025-09-13T01:26:57,485 Downloading SieveAI-0.5.2023090513.tar.gz (28 kB) 2025-09-13T01:26:57,523 Added sieveai==0.5.2023090513 from https://files.pythonhosted.org/packages/53/fb/31727fc4b169b880f83a2a6665e389bbbb64664ef2cd744a9a359b850c88/SieveAI-0.5.2023090513.tar.gz to build tracker '/tmp/pip-build-tracker-60u1o7j_' 2025-09-13T01:26:57,524 Running setup.py (path:/tmp/pip-wheel-s9_p1dp7/sieveai_27ccce99ee514759a83ed4c7c84ddf9f/setup.py) egg_info for package sieveai 2025-09-13T01:26:57,525 Created temporary directory: /tmp/pip-pip-egg-info-44hbgbjp 2025-09-13T01:26:57,525 Preparing metadata (setup.py): started 2025-09-13T01:26:57,526 Running command python setup.py egg_info 2025-09-13T01:26:58,134 Traceback (most recent call last): 2025-09-13T01:26:58,136 File "", line 2, in 2025-09-13T01:26:58,137 exec(compile(''' 2025-09-13T01:26:58,137 ~~~~^^^^^^^^^^^^ 2025-09-13T01:26:58,137 # This is -- a caller that pip uses to run setup.py 2025-09-13T01:26:58,137 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T01:26:58,137 ...<32 lines>... 2025-09-13T01:26:58,137 exec(compile(setup_py_code, filename, "exec")) 2025-09-13T01:26:58,138 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T01:26:58,138 ''' % ('/tmp/pip-wheel-s9_p1dp7/sieveai_27ccce99ee514759a83ed4c7c84ddf9f/setup.py',), "", "exec")) 2025-09-13T01:26:58,138 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T01:26:58,138 File "", line 35, in 2025-09-13T01:26:58,138 File "/tmp/pip-wheel-s9_p1dp7/sieveai_27ccce99ee514759a83ed4c7c84ddf9f/setup.py", line 2, in 2025-09-13T01:26:58,138 from sieveai import * 2025-09-13T01:26:58,138 File "/tmp/pip-wheel-s9_p1dp7/sieveai_27ccce99ee514759a83ed4c7c84ddf9f/sieveai/__init__.py", line 9, in 2025-09-13T01:26:58,139 from .exe import Vina 2025-09-13T01:26:58,139 File "/tmp/pip-wheel-s9_p1dp7/sieveai_27ccce99ee514759a83ed4c7c84ddf9f/sieveai/exe/__init__.py", line 1, in 2025-09-13T01:26:58,139 from .Vina import Vina 2025-09-13T01:26:58,139 File "/tmp/pip-wheel-s9_p1dp7/sieveai_27ccce99ee514759a83ed4c7c84ddf9f/sieveai/exe/Vina.py", line 2, in 2025-09-13T01:26:58,139 from pdbtools.pdb_selaltloc import select_by_occupancy as selAltLoc 2025-09-13T01:26:58,139 ModuleNotFoundError: No module named 'pdbtools' 2025-09-13T01:26:58,246 ERROR: python setup.py egg_info exited with 1 2025-09-13T01:26:58,259 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-13T01:26:58,259 exec(compile('"'"''"'"''"'"' 2025-09-13T01:26:58,259 # This is -- a caller that pip uses to run setup.py 2025-09-13T01:26:58,259 # 2025-09-13T01:26:58,259 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-13T01:26:58,259 # import from `distutils.core` to work with newer packaging standards. 2025-09-13T01:26:58,259 # - It provides a clear error message when setuptools is not installed. 2025-09-13T01:26:58,259 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-13T01:26:58,259 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-13T01:26:58,259 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-13T01:26:58,259 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-13T01:26:58,259 import os, sys, tokenize, traceback 2025-09-13T01:26:58,259 2025-09-13T01:26:58,259 try: 2025-09-13T01:26:58,259 import setuptools 2025-09-13T01:26:58,259 except ImportError: 2025-09-13T01:26:58,259 print( 2025-09-13T01:26:58,259 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-13T01:26:58,259 "the build environment with exception:", 2025-09-13T01:26:58,259 file=sys.stderr, 2025-09-13T01:26:58,259 ) 2025-09-13T01:26:58,259 traceback.print_exc() 2025-09-13T01:26:58,259 sys.exit(1) 2025-09-13T01:26:58,259 2025-09-13T01:26:58,259 __file__ = %r 2025-09-13T01:26:58,259 sys.argv[0] = __file__ 2025-09-13T01:26:58,259 2025-09-13T01:26:58,259 if os.path.exists(__file__): 2025-09-13T01:26:58,259 filename = __file__ 2025-09-13T01:26:58,259 with tokenize.open(__file__) as f: 2025-09-13T01:26:58,259 setup_py_code = f.read() 2025-09-13T01:26:58,259 else: 2025-09-13T01:26:58,259 filename = "" 2025-09-13T01:26:58,259 setup_py_code = "from setuptools import setup; setup()" 2025-09-13T01:26:58,259 2025-09-13T01:26:58,259 exec(compile(setup_py_code, filename, "exec")) 2025-09-13T01:26:58,259 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-s9_p1dp7/sieveai_27ccce99ee514759a83ed4c7c84ddf9f/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-44hbgbjp[/] 2025-09-13T01:26:58,259 [bold magenta]cwd[/]: /tmp/pip-wheel-s9_p1dp7/sieveai_27ccce99ee514759a83ed4c7c84ddf9f/ 2025-09-13T01:26:58,259 Preparing metadata (setup.py): finished with status 'error' 2025-09-13T01:26:58,260 ERROR: metadata generation failed 2025-09-13T01:26:58,266 Exception information: 2025-09-13T01:26:58,266 Traceback (most recent call last): 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-13T01:26:58,266 call_subprocess( 2025-09-13T01:26:58,266 ~~~~~~~~~~~~~~~^ 2025-09-13T01:26:58,266 args, 2025-09-13T01:26:58,266 ^^^^^ 2025-09-13T01:26:58,266 ...<2 lines>... 2025-09-13T01:26:58,266 spinner=spinner, 2025-09-13T01:26:58,266 ^^^^^^^^^^^^^^^^ 2025-09-13T01:26:58,266 ) 2025-09-13T01:26:58,266 ^ 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-13T01:26:58,266 raise error 2025-09-13T01:26:58,266 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-13T01:26:58,266 2025-09-13T01:26:58,266 The above exception was the direct cause of the following exception: 2025-09-13T01:26:58,266 2025-09-13T01:26:58,266 Traceback (most recent call last): 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-13T01:26:58,266 status = _inner_run() 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-13T01:26:58,266 return self.run(options, args) 2025-09-13T01:26:58,266 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-13T01:26:58,266 return func(self, options, args) 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-13T01:26:58,266 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-13T01:26:58,266 result = self._result = resolver.resolve( 2025-09-13T01:26:58,266 ~~~~~~~~~~~~~~~~^ 2025-09-13T01:26:58,266 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-13T01:26:58,266 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T01:26:58,266 ) 2025-09-13T01:26:58,266 ^ 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-13T01:26:58,266 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-13T01:26:58,266 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-13T01:26:58,266 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-13T01:26:58,266 if not criterion.candidates: 2025-09-13T01:26:58,266 ^^^^^^^^^^^^^^^^^^^^ 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-13T01:26:58,266 return bool(self._sequence) 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-13T01:26:58,266 self._bool = any(self) 2025-09-13T01:26:58,266 ~~~^^^^^^ 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-13T01:26:58,266 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-13T01:26:58,266 ^^^^^^^^ 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-13T01:26:58,266 candidate = func() 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-13T01:26:58,266 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-13T01:26:58,266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-13T01:26:58,266 link, template, name, version 2025-09-13T01:26:58,266 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T01:26:58,266 ) 2025-09-13T01:26:58,266 ^ 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-13T01:26:58,266 self._link_candidate_cache[link] = LinkCandidate( 2025-09-13T01:26:58,266 ~~~~~~~~~~~~~^ 2025-09-13T01:26:58,266 link, 2025-09-13T01:26:58,266 ^^^^^ 2025-09-13T01:26:58,266 ...<3 lines>... 2025-09-13T01:26:58,266 version=version, 2025-09-13T01:26:58,266 ^^^^^^^^^^^^^^^^ 2025-09-13T01:26:58,266 ) 2025-09-13T01:26:58,266 ^ 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-13T01:26:58,266 super().__init__( 2025-09-13T01:26:58,266 ~~~~~~~~~~~~~~~~^ 2025-09-13T01:26:58,266 link=link, 2025-09-13T01:26:58,266 ^^^^^^^^^^ 2025-09-13T01:26:58,266 ...<4 lines>... 2025-09-13T01:26:58,266 version=version, 2025-09-13T01:26:58,266 ^^^^^^^^^^^^^^^^ 2025-09-13T01:26:58,266 ) 2025-09-13T01:26:58,266 ^ 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-13T01:26:58,266 self.dist = self._prepare() 2025-09-13T01:26:58,266 ~~~~~~~~~~~~~^^ 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-13T01:26:58,266 dist = self._prepare_distribution() 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-13T01:26:58,266 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-13T01:26:58,266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-13T01:26:58,266 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-13T01:26:58,266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-13T01:26:58,266 dist = _get_prepared_distribution( 2025-09-13T01:26:58,266 req, 2025-09-13T01:26:58,266 ...<3 lines>... 2025-09-13T01:26:58,266 self.check_build_deps, 2025-09-13T01:26:58,266 ) 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-13T01:26:58,266 abstract_dist.prepare_distribution_metadata( 2025-09-13T01:26:58,266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-13T01:26:58,266 finder, build_isolation, check_build_deps 2025-09-13T01:26:58,266 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T01:26:58,266 ) 2025-09-13T01:26:58,266 ^ 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-13T01:26:58,266 self.req.prepare_metadata() 2025-09-13T01:26:58,266 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-13T01:26:58,266 self.metadata_directory = generate_metadata_legacy( 2025-09-13T01:26:58,266 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-13T01:26:58,266 build_env=self.build_env, 2025-09-13T01:26:58,266 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T01:26:58,266 ...<3 lines>... 2025-09-13T01:26:58,266 details=details, 2025-09-13T01:26:58,266 ^^^^^^^^^^^^^^^^ 2025-09-13T01:26:58,266 ) 2025-09-13T01:26:58,266 ^ 2025-09-13T01:26:58,266 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-13T01:26:58,266 raise MetadataGenerationFailed(package_details=details) from error 2025-09-13T01:26:58,266 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-13T01:26:58,290 Removed sieveai==0.5.2023090513 from https://files.pythonhosted.org/packages/53/fb/31727fc4b169b880f83a2a6665e389bbbb64664ef2cd744a9a359b850c88/SieveAI-0.5.2023090513.tar.gz from build tracker '/tmp/pip-build-tracker-60u1o7j_' 2025-09-13T01:26:58,290 Removed build tracker: '/tmp/pip-build-tracker-60u1o7j_'