2025-09-13T11:17:02,166 Created temporary directory: /tmp/pip-build-tracker-oi7q3aiz 2025-09-13T11:17:02,167 Initialized build tracking at /tmp/pip-build-tracker-oi7q3aiz 2025-09-13T11:17:02,167 Created build tracker: /tmp/pip-build-tracker-oi7q3aiz 2025-09-13T11:17:02,167 Entered build tracker: /tmp/pip-build-tracker-oi7q3aiz 2025-09-13T11:17:02,168 Created temporary directory: /tmp/pip-wheel-ub5el8lf 2025-09-13T11:17:02,171 Created temporary directory: /tmp/pip-ephem-wheel-cache-r47ohdmq 2025-09-13T11:17:02,230 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-13T11:17:02,232 2 location(s) to search for versions of scipion-em-gautomatch: 2025-09-13T11:17:02,232 * https://pypi.org/simple/scipion-em-gautomatch/ 2025-09-13T11:17:02,232 * https://www.piwheels.org/simple/scipion-em-gautomatch/ 2025-09-13T11:17:02,233 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-gautomatch/ 2025-09-13T11:17:02,233 Getting page https://pypi.org/simple/scipion-em-gautomatch/ 2025-09-13T11:17:02,234 Found index url https://pypi.org/simple/ 2025-09-13T11:17:02,439 Fetched page https://pypi.org/simple/scipion-em-gautomatch/ as application/vnd.pypi.simple.v1+json 2025-09-13T11:17:02,443 Found link https://files.pythonhosted.org/packages/8d/ca/787490e3457272a4ae4afbe10d9261e07e827004bf498f8647bd46785b40/scipion-em-gautomatch-1.0.0.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.0 2025-09-13T11:17:02,444 Found link https://files.pythonhosted.org/packages/00/b6/95aad48587b2a33c4efcb4c081f44078edca2894273ac3e91f247e7bb338/scipion-em-gautomatch-1.0.1.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.1 2025-09-13T11:17:02,444 Found link https://files.pythonhosted.org/packages/ce/a0/6e9e519b8c4477ea3822835d83d903cf24ad6486e3926ef7c151ca39bee7/scipion-em-gautomatch-1.0.2.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.2 2025-09-13T11:17:02,444 Found link https://files.pythonhosted.org/packages/4b/1f/cceeaf57c2bb54916771123a62562ec1fabb8ed9cf2614ad871f2df418e1/scipion-em-gautomatch-1.0.4.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.4 2025-09-13T11:17:02,444 Found link https://files.pythonhosted.org/packages/43/fb/ad471d81b79d9a729f75b10fd3e6ef2846ae19bafa650dddd031b49f1139/scipion-em-gautomatch-1.0.5b0.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.5b0 2025-09-13T11:17:02,445 Found link https://files.pythonhosted.org/packages/22/91/240f45f422afaa4e42109fa10243e38af900bbf325aa53f0114481fe3186/scipion-em-gautomatch-1.0.6.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.6 2025-09-13T11:17:02,445 Found link https://files.pythonhosted.org/packages/c6/bf/c348297edcee7fd4318a6933fdfbb0db0e4c92d106011df2c416eda38b00/scipion-em-gautomatch-1.0.7.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.7 2025-09-13T11:17:02,445 Found link https://files.pythonhosted.org/packages/7b/b0/0d650f8588eaedfbb5291f9523813509ef164b0aa6d1fe73dc6ed4c03bd0/scipion-em-gautomatch-1.0.8.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.8 2025-09-13T11:17:02,445 Found link https://files.pythonhosted.org/packages/bb/af/b0dea4c4f8796b0a05a017c56ba332cc89f4776c700d68670e3f09235f0f/scipion-em-gautomatch-1.0.9.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.9 2025-09-13T11:17:02,446 Found link https://files.pythonhosted.org/packages/0c/08/f2c933be684f47b7353c8f85a9127077f78e8efedaa599826e8b59e628b7/scipion-em-gautomatch-1.0.10.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.10 2025-09-13T11:17:02,446 Found link https://files.pythonhosted.org/packages/b2/ce/87303ad7e72c877d68e4262c09e02486d61fbbd86b9b9b7316dc1274a429/scipion-em-gautomatch-3.0.10.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 3.0.10 2025-09-13T11:17:02,446 Found link https://files.pythonhosted.org/packages/ea/87/9cc39e78b793b9781f7e1ab06a4e978d2c3ec0ec55c44dbb299be7f3d810/scipion-em-gautomatch-3.0.11.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 3.0.11 2025-09-13T11:17:02,446 Found link https://files.pythonhosted.org/packages/c1/0c/e6a82f62564eb2ae25c69fec39dab0ec803048c8607ec6bc8f7d190cddff/scipion-em-gautomatch-3.0.12.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 3.0.12 2025-09-13T11:17:02,446 Skipping link: No binaries permitted for scipion-em-gautomatch: https://files.pythonhosted.org/packages/9d/a2/22e14869647274f96b632dfb1d5ac49c55732dc13a54b4946488feb04ab9/scipion_em_gautomatch-3.0.12-py3-none-any.whl (from https://pypi.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,446 Found link https://files.pythonhosted.org/packages/7c/c8/0380d8f22edb9c244666219a462ca043b3a886b3b03e12bfe126c1ae5ae5/scipion-em-gautomatch-3.0.13.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 3.0.13 2025-09-13T11:17:02,447 Skipping link: No binaries permitted for scipion-em-gautomatch: https://files.pythonhosted.org/packages/a4/ba/ceddb258b62c90ce0460ff1a1db50cc83b4116d39ac6b88c7eeab227e533/scipion_em_gautomatch-3.0.13-py3-none-any.whl (from https://pypi.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,447 Found link https://files.pythonhosted.org/packages/74/6a/8a2f60d073f37da108d97f8412d05a94773390a48c7e560ef207bac2fa03/scipion-em-gautomatch-3.0.14.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 3.0.14 2025-09-13T11:17:02,447 Skipping link: No binaries permitted for scipion-em-gautomatch: https://files.pythonhosted.org/packages/c5/56/d0af6987eedf274adda3d3b1202b80b7bb68e6a5e44000b7a12d88529c4f/scipion_em_gautomatch-3.0.14-py3-none-any.whl (from https://pypi.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,447 Found link https://files.pythonhosted.org/packages/77/c9/dfdc3412430a861fe748351ee738588f13188220aea1ac34a8925c2820db/scipion-em-gautomatch-3.0.15.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 3.0.15 2025-09-13T11:17:02,447 Skipping link: No binaries permitted for scipion-em-gautomatch: https://files.pythonhosted.org/packages/3f/35/bbda540296e621051402ff3a634962589348b747fb059548ae428cc2b17d/scipion_em_gautomatch-3.0.15-py3-none-any.whl (from https://pypi.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,447 Found link https://files.pythonhosted.org/packages/df/64/1a47ccf503b297b00705d8636668119d8d4ac1cafb4f35c7f2752d5d472d/scipion-em-gautomatch-3.0.16.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 3.0.16 2025-09-13T11:17:02,448 Skipping link: No binaries permitted for scipion-em-gautomatch: https://files.pythonhosted.org/packages/18/7d/bf5147f123e35d12c0fccefc2ba05002f2514d923930e4d86872830d6ee6/scipion_em_gautomatch-3.0.16-py3-none-any.whl (from https://pypi.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,448 Found link https://files.pythonhosted.org/packages/14/cc/90a3bc5fc2a0207be2c65f74c695dbc12b8b8728038676c47487beab0240/scipion-em-gautomatch-3.0.17.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 3.0.17 2025-09-13T11:17:02,448 Skipping link: No binaries permitted for scipion-em-gautomatch: https://files.pythonhosted.org/packages/cc/23/e562e5d8383d49aafc2eae0db888f27c264cc714f9522199bfb32ea9f5d1/scipion_em_gautomatch-3.0.17-py3-none-any.whl (from https://pypi.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,448 Found link https://files.pythonhosted.org/packages/eb/26/a1fcdc07e192eed3ff74493ce1e12552d77e2bb59dd181532aac78df657d/scipion-em-gautomatch-3.0.18.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 3.0.18 2025-09-13T11:17:02,448 Skipping link: No binaries permitted for scipion-em-gautomatch: https://files.pythonhosted.org/packages/6b/f8/de77a467054417d7596f132226b9de1bb52141e0c18de3a5a0be69aa7b86/scipion_em_gautomatch-3.0.18-py3-none-any.whl (from https://pypi.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,448 Found link https://files.pythonhosted.org/packages/79/64/85f45ce2e3b9ac734cbba6fc06509f48a6acac83a52de723bda9f89eeab2/scipion-em-gautomatch-3.0.19.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 3.0.19 2025-09-13T11:17:02,449 Skipping link: No binaries permitted for scipion-em-gautomatch: https://files.pythonhosted.org/packages/4e/81/c43949f36c0473d1f677b65a5afeebc09b531d55989c7f3d7525b1107d02/scipion_em_gautomatch-3.0.19-py3-none-any.whl (from https://pypi.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,449 Skipping link: No binaries permitted for scipion-em-gautomatch: https://files.pythonhosted.org/packages/11/2b/d16a493d2a0b2f8975827dc21091d2e43d7329b33b2c6b9cff27d60aa86e/scipion_em_gautomatch-3.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,449 Skipping link: No binaries permitted for scipion-em-gautomatch: https://files.pythonhosted.org/packages/38/7c/b09dcf92d15b05c751f5f8622f372e1d704a1ba21511b2ef446c7ba3c5d5/scipion_em_gautomatch-3.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,449 Found link https://files.pythonhosted.org/packages/6f/28/88a803c92628679717ed48d238f8a921632c9352ad5a74ae3bfe1e79b920/scipion_em_gautomatch-3.2.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/), version: 3.2 2025-09-13T11:17:02,449 Skipping link: No binaries permitted for scipion-em-gautomatch: https://files.pythonhosted.org/packages/0d/c7/7d8d61c934d51d27190dc6f943a171eaea4f63bff2c30671901b700ba2c3/scipion_em_gautomatch-3.2.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-gautomatch/) (requires-python:>=3.8) 2025-09-13T11:17:02,450 Found link https://files.pythonhosted.org/packages/d0/ec/cccfe9b0208fdf4e447d857e8b3a2cd09594af082b7ea4424e51e55c7df7/scipion_em_gautomatch-3.2.1.tar.gz (from https://pypi.org/simple/scipion-em-gautomatch/) (requires-python:>=3.8), version: 3.2.1 2025-09-13T11:17:02,450 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-gautomatch/ 2025-09-13T11:17:02,450 Getting page https://www.piwheels.org/simple/scipion-em-gautomatch/ 2025-09-13T11:17:02,451 Found index url https://www.piwheels.org/simple/ 2025-09-13T11:17:02,536 Fetched page https://www.piwheels.org/simple/scipion-em-gautomatch/ as text/html 2025-09-13T11:17:02,540 Skipping link: No binaries permitted for scipion-em-gautomatch: https://archive1.piwheels.org/simple/scipion-em-gautomatch/scipion_em_gautomatch-3.2.1-py3-none-any.whl#sha256=0d4ac70677b78179af46288e166b0d8567f83fc86b3c6b85dd18c0a9468d0db4 (from https://www.piwheels.org/simple/scipion-em-gautomatch/) (requires-python:>=3.8) 2025-09-13T11:17:02,540 Skipping link: No binaries permitted for scipion-em-gautomatch: https://archive1.piwheels.org/simple/scipion-em-gautomatch/scipion_em_gautomatch-3.0.14-py3-none-any.whl#sha256=6f1fd48d222a2a87b1f48031d32b310304679cbd990e3d02daa15d0b8fc6755b (from https://www.piwheels.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,540 Skipping link: No binaries permitted for scipion-em-gautomatch: https://archive1.piwheels.org/simple/scipion-em-gautomatch/scipion_em_gautomatch-3.0.13-py3-none-any.whl#sha256=869842649e25c7277cb5ff9ce378da2db5b8394d0e8b4a7150da90b8e671dc6f (from https://www.piwheels.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,540 Skipping link: No binaries permitted for scipion-em-gautomatch: https://archive1.piwheels.org/simple/scipion-em-gautomatch/scipion_em_gautomatch-3.0.12-py3-none-any.whl#sha256=9f97edf267f3b6626fa59a29eac8468adf4af1de28355602b07fb362a992fc2d (from https://www.piwheels.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,540 Skipping link: No binaries permitted for scipion-em-gautomatch: https://archive1.piwheels.org/simple/scipion-em-gautomatch/scipion_em_gautomatch-3.0.11-py3-none-any.whl#sha256=01c195cb1db648895965f6b7d773ded962a8c0f37f4927c2fa685f1a5fcf4175 (from https://www.piwheels.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,540 Skipping link: No binaries permitted for scipion-em-gautomatch: https://archive1.piwheels.org/simple/scipion-em-gautomatch/scipion_em_gautomatch-3.0.10-py3-none-any.whl#sha256=f09d2847d3169060d63d196ffc0d5c59bfe7e8616b473e18fe89e1cae42575c8 (from https://www.piwheels.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,541 Skipping link: No binaries permitted for scipion-em-gautomatch: https://archive1.piwheels.org/simple/scipion-em-gautomatch/scipion_em_gautomatch-1.0.10-py3-none-any.whl#sha256=7e35ace97ea93059eb8421c8db3f0bf572d39ffc23d41e51ba4c94bfcbf2fa47 (from https://www.piwheels.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,541 Skipping link: No binaries permitted for scipion-em-gautomatch: https://archive1.piwheels.org/simple/scipion-em-gautomatch/scipion_em_gautomatch-1.0.9-py3-none-any.whl#sha256=c1d0b05a0bbd6953e878e239da8de3882a3205e1cac533b025c1c993b692aaa2 (from https://www.piwheels.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,541 Skipping link: No binaries permitted for scipion-em-gautomatch: https://archive1.piwheels.org/simple/scipion-em-gautomatch/scipion_em_gautomatch-1.0.8-py3-none-any.whl#sha256=a38671f446b9d9a5fb83a1c5bb03f9ec404a6b59a6706b21e55471be70f6a9cb (from https://www.piwheels.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,541 Skipping link: No binaries permitted for scipion-em-gautomatch: https://archive1.piwheels.org/simple/scipion-em-gautomatch/scipion_em_gautomatch-1.0.7-py3-none-any.whl#sha256=371e9bc0a7611dadc0efd118e43a5f9b3ca2d8d1827188c6e6c0e70e98e0811f (from https://www.piwheels.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,541 Skipping link: No binaries permitted for scipion-em-gautomatch: https://archive1.piwheels.org/simple/scipion-em-gautomatch/scipion_em_gautomatch-1.0.6-py3-none-any.whl#sha256=0ae78c8ac75d843789cd2b36ebe4c535e39f653bc95419d22b9fad83f8007f5a (from https://www.piwheels.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,541 Skipping link: No binaries permitted for scipion-em-gautomatch: https://archive1.piwheels.org/simple/scipion-em-gautomatch/scipion_em_gautomatch-1.0.5b0-py3-none-any.whl#sha256=fed649e92913830f1387a88ad088882f9da385c63b67b1c972d95945f8321c61 (from https://www.piwheels.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,541 Skipping link: No binaries permitted for scipion-em-gautomatch: https://archive1.piwheels.org/simple/scipion-em-gautomatch/scipion_em_gautomatch-1.0.4-py3-none-any.whl#sha256=944b3245af9a64365f69409b56d18dd871b869679da2dffc16c7414158e26535 (from https://www.piwheels.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,541 Skipping link: No binaries permitted for scipion-em-gautomatch: https://archive1.piwheels.org/simple/scipion-em-gautomatch/scipion_em_gautomatch-1.0.2-py3-none-any.whl#sha256=a0cc6aafaba52ef389beaacc1c830bc9904b510ca177a289f6df7b1a188abc19 (from https://www.piwheels.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,542 Skipping link: No binaries permitted for scipion-em-gautomatch: https://archive1.piwheels.org/simple/scipion-em-gautomatch/scipion_em_gautomatch-1.0.1-py3-none-any.whl#sha256=eee873898ac17ba2fbd99de12f70a372d96730b58b3c51dc2b5b6e8ef8941c8e (from https://www.piwheels.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,542 Skipping link: No binaries permitted for scipion-em-gautomatch: https://archive1.piwheels.org/simple/scipion-em-gautomatch/scipion_em_gautomatch-1.0.0-py3-none-any.whl#sha256=3f5081dc7dc4fa15acbedf2e1c409970401cbc96559e441da99c6b42a965f3e3 (from https://www.piwheels.org/simple/scipion-em-gautomatch/) 2025-09-13T11:17:02,542 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-gautomatch/ 2025-09-13T11:17:02,542 Skipping link: not a file: https://pypi.org/simple/scipion-em-gautomatch/ 2025-09-13T11:17:02,566 Given no hashes to check 1 links for project 'scipion-em-gautomatch': discarding no candidates 2025-09-13T11:17:02,567 Collecting scipion-em-gautomatch==3.0.18 2025-09-13T11:17:02,568 Created temporary directory: /tmp/pip-unpack-nl3tqks5 2025-09-13T11:17:02,705 Downloading scipion-em-gautomatch-3.0.18.tar.gz (36 kB) 2025-09-13T11:17:02,737 Added scipion-em-gautomatch==3.0.18 from https://files.pythonhosted.org/packages/eb/26/a1fcdc07e192eed3ff74493ce1e12552d77e2bb59dd181532aac78df657d/scipion-em-gautomatch-3.0.18.tar.gz to build tracker '/tmp/pip-build-tracker-oi7q3aiz' 2025-09-13T11:17:02,739 Running setup.py (path:/tmp/pip-wheel-ub5el8lf/scipion-em-gautomatch_4b71c909eda240abaccce11270bc5194/setup.py) egg_info for package scipion-em-gautomatch 2025-09-13T11:17:02,739 Created temporary directory: /tmp/pip-pip-egg-info-eywlr110 2025-09-13T11:17:02,740 Preparing metadata (setup.py): started 2025-09-13T11:17:02,740 Running command python setup.py egg_info 2025-09-13T11:17:03,263 Traceback (most recent call last): 2025-09-13T11:17:03,264 File "", line 2, in 2025-09-13T11:17:03,265 exec(compile(''' 2025-09-13T11:17:03,265 ~~~~^^^^^^^^^^^^ 2025-09-13T11:17:03,265 # This is -- a caller that pip uses to run setup.py 2025-09-13T11:17:03,265 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T11:17:03,265 ...<32 lines>... 2025-09-13T11:17:03,265 exec(compile(setup_py_code, filename, "exec")) 2025-09-13T11:17:03,265 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T11:17:03,265 ''' % ('/tmp/pip-wheel-ub5el8lf/scipion-em-gautomatch_4b71c909eda240abaccce11270bc5194/setup.py',), "", "exec")) 2025-09-13T11:17:03,265 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T11:17:03,266 File "", line 35, in 2025-09-13T11:17:03,266 File "/tmp/pip-wheel-ub5el8lf/scipion-em-gautomatch_4b71c909eda240abaccce11270bc5194/setup.py", line 39, in 2025-09-13T11:17:03,266 from gautomatch import __version__ 2025-09-13T11:17:03,266 File "/tmp/pip-wheel-ub5el8lf/scipion-em-gautomatch_4b71c909eda240abaccce11270bc5194/gautomatch/__init__.py", line 29, in 2025-09-13T11:17:03,266 import pwem 2025-09-13T11:17:03,266 ModuleNotFoundError: No module named 'pwem' 2025-09-13T11:17:03,350 ERROR: python setup.py egg_info exited with 1 2025-09-13T11:17:03,362 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-13T11:17:03,362 exec(compile('"'"''"'"''"'"' 2025-09-13T11:17:03,362 # This is -- a caller that pip uses to run setup.py 2025-09-13T11:17:03,362 # 2025-09-13T11:17:03,362 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-13T11:17:03,362 # import from `distutils.core` to work with newer packaging standards. 2025-09-13T11:17:03,362 # - It provides a clear error message when setuptools is not installed. 2025-09-13T11:17:03,362 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-13T11:17:03,362 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-13T11:17:03,362 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-13T11:17:03,362 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-13T11:17:03,362 import os, sys, tokenize, traceback 2025-09-13T11:17:03,362 2025-09-13T11:17:03,362 try: 2025-09-13T11:17:03,362 import setuptools 2025-09-13T11:17:03,362 except ImportError: 2025-09-13T11:17:03,362 print( 2025-09-13T11:17:03,362 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-13T11:17:03,362 "the build environment with exception:", 2025-09-13T11:17:03,362 file=sys.stderr, 2025-09-13T11:17:03,362 ) 2025-09-13T11:17:03,362 traceback.print_exc() 2025-09-13T11:17:03,362 sys.exit(1) 2025-09-13T11:17:03,362 2025-09-13T11:17:03,362 __file__ = %r 2025-09-13T11:17:03,362 sys.argv[0] = __file__ 2025-09-13T11:17:03,362 2025-09-13T11:17:03,362 if os.path.exists(__file__): 2025-09-13T11:17:03,362 filename = __file__ 2025-09-13T11:17:03,362 with tokenize.open(__file__) as f: 2025-09-13T11:17:03,362 setup_py_code = f.read() 2025-09-13T11:17:03,362 else: 2025-09-13T11:17:03,362 filename = "" 2025-09-13T11:17:03,362 setup_py_code = "from setuptools import setup; setup()" 2025-09-13T11:17:03,362 2025-09-13T11:17:03,362 exec(compile(setup_py_code, filename, "exec")) 2025-09-13T11:17:03,362 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-ub5el8lf/scipion-em-gautomatch_4b71c909eda240abaccce11270bc5194/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-eywlr110[/] 2025-09-13T11:17:03,362 [bold magenta]cwd[/]: /tmp/pip-wheel-ub5el8lf/scipion-em-gautomatch_4b71c909eda240abaccce11270bc5194/ 2025-09-13T11:17:03,363 Preparing metadata (setup.py): finished with status 'error' 2025-09-13T11:17:03,363 ERROR: metadata generation failed 2025-09-13T11:17:03,369 Exception information: 2025-09-13T11:17:03,369 Traceback (most recent call last): 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-13T11:17:03,369 call_subprocess( 2025-09-13T11:17:03,369 ~~~~~~~~~~~~~~~^ 2025-09-13T11:17:03,369 args, 2025-09-13T11:17:03,369 ^^^^^ 2025-09-13T11:17:03,369 ...<2 lines>... 2025-09-13T11:17:03,369 spinner=spinner, 2025-09-13T11:17:03,369 ^^^^^^^^^^^^^^^^ 2025-09-13T11:17:03,369 ) 2025-09-13T11:17:03,369 ^ 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-13T11:17:03,369 raise error 2025-09-13T11:17:03,369 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-13T11:17:03,369 2025-09-13T11:17:03,369 The above exception was the direct cause of the following exception: 2025-09-13T11:17:03,369 2025-09-13T11:17:03,369 Traceback (most recent call last): 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-13T11:17:03,369 status = _inner_run() 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-13T11:17:03,369 return self.run(options, args) 2025-09-13T11:17:03,369 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-13T11:17:03,369 return func(self, options, args) 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-13T11:17:03,369 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-13T11:17:03,369 result = self._result = resolver.resolve( 2025-09-13T11:17:03,369 ~~~~~~~~~~~~~~~~^ 2025-09-13T11:17:03,369 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-13T11:17:03,369 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T11:17:03,369 ) 2025-09-13T11:17:03,369 ^ 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-13T11:17:03,369 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-13T11:17:03,369 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-13T11:17:03,369 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-13T11:17:03,369 if not criterion.candidates: 2025-09-13T11:17:03,369 ^^^^^^^^^^^^^^^^^^^^ 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-13T11:17:03,369 return bool(self._sequence) 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-13T11:17:03,369 self._bool = any(self) 2025-09-13T11:17:03,369 ~~~^^^^^^ 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-13T11:17:03,369 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-13T11:17:03,369 ^^^^^^^^ 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-13T11:17:03,369 candidate = func() 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-13T11:17:03,369 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-13T11:17:03,369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-13T11:17:03,369 link, template, name, version 2025-09-13T11:17:03,369 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T11:17:03,369 ) 2025-09-13T11:17:03,369 ^ 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-13T11:17:03,369 self._link_candidate_cache[link] = LinkCandidate( 2025-09-13T11:17:03,369 ~~~~~~~~~~~~~^ 2025-09-13T11:17:03,369 link, 2025-09-13T11:17:03,369 ^^^^^ 2025-09-13T11:17:03,369 ...<3 lines>... 2025-09-13T11:17:03,369 version=version, 2025-09-13T11:17:03,369 ^^^^^^^^^^^^^^^^ 2025-09-13T11:17:03,369 ) 2025-09-13T11:17:03,369 ^ 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-13T11:17:03,369 super().__init__( 2025-09-13T11:17:03,369 ~~~~~~~~~~~~~~~~^ 2025-09-13T11:17:03,369 link=link, 2025-09-13T11:17:03,369 ^^^^^^^^^^ 2025-09-13T11:17:03,369 ...<4 lines>... 2025-09-13T11:17:03,369 version=version, 2025-09-13T11:17:03,369 ^^^^^^^^^^^^^^^^ 2025-09-13T11:17:03,369 ) 2025-09-13T11:17:03,369 ^ 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-13T11:17:03,369 self.dist = self._prepare() 2025-09-13T11:17:03,369 ~~~~~~~~~~~~~^^ 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-13T11:17:03,369 dist = self._prepare_distribution() 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-13T11:17:03,369 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-13T11:17:03,369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-13T11:17:03,369 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-13T11:17:03,369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-13T11:17:03,369 dist = _get_prepared_distribution( 2025-09-13T11:17:03,369 req, 2025-09-13T11:17:03,369 ...<3 lines>... 2025-09-13T11:17:03,369 self.check_build_deps, 2025-09-13T11:17:03,369 ) 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-13T11:17:03,369 abstract_dist.prepare_distribution_metadata( 2025-09-13T11:17:03,369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-13T11:17:03,369 finder, build_isolation, check_build_deps 2025-09-13T11:17:03,369 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T11:17:03,369 ) 2025-09-13T11:17:03,369 ^ 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-13T11:17:03,369 self.req.prepare_metadata() 2025-09-13T11:17:03,369 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-13T11:17:03,369 self.metadata_directory = generate_metadata_legacy( 2025-09-13T11:17:03,369 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-13T11:17:03,369 build_env=self.build_env, 2025-09-13T11:17:03,369 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T11:17:03,369 ...<3 lines>... 2025-09-13T11:17:03,369 details=details, 2025-09-13T11:17:03,369 ^^^^^^^^^^^^^^^^ 2025-09-13T11:17:03,369 ) 2025-09-13T11:17:03,369 ^ 2025-09-13T11:17:03,369 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-13T11:17:03,369 raise MetadataGenerationFailed(package_details=details) from error 2025-09-13T11:17:03,369 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-13T11:17:03,390 Removed scipion-em-gautomatch==3.0.18 from https://files.pythonhosted.org/packages/eb/26/a1fcdc07e192eed3ff74493ce1e12552d77e2bb59dd181532aac78df657d/scipion-em-gautomatch-3.0.18.tar.gz from build tracker '/tmp/pip-build-tracker-oi7q3aiz' 2025-09-13T11:17:03,390 Removed build tracker: '/tmp/pip-build-tracker-oi7q3aiz'