2025-09-13T22:05:42,919 Created temporary directory: /tmp/pip-build-tracker-07v4tz48 2025-09-13T22:05:42,920 Initialized build tracking at /tmp/pip-build-tracker-07v4tz48 2025-09-13T22:05:42,920 Created build tracker: /tmp/pip-build-tracker-07v4tz48 2025-09-13T22:05:42,920 Entered build tracker: /tmp/pip-build-tracker-07v4tz48 2025-09-13T22:05:42,920 Created temporary directory: /tmp/pip-wheel-as4d63q3 2025-09-13T22:05:42,924 Created temporary directory: /tmp/pip-ephem-wheel-cache-wg6l5oyd 2025-09-13T22:05:42,982 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-13T22:05:42,985 2 location(s) to search for versions of scbamtools: 2025-09-13T22:05:42,985 * https://pypi.org/simple/scbamtools/ 2025-09-13T22:05:42,985 * https://www.piwheels.org/simple/scbamtools/ 2025-09-13T22:05:42,985 Fetching project page and analyzing links: https://pypi.org/simple/scbamtools/ 2025-09-13T22:05:42,985 Getting page https://pypi.org/simple/scbamtools/ 2025-09-13T22:05:42,987 Found index url https://pypi.org/simple/ 2025-09-13T22:05:43,060 Fetched page https://pypi.org/simple/scbamtools/ as application/vnd.pypi.simple.v1+json 2025-09-13T22:05:43,062 Found link https://files.pythonhosted.org/packages/90/98/a7355f2097b73330b58718e0c6e83ee7b93bee0d6a00a010db3eaea2fbd5/scbamtools-0.1.tar.gz (from https://pypi.org/simple/scbamtools/) (requires-python:>=3.10), version: 0.1 2025-09-13T22:05:43,063 Found link https://files.pythonhosted.org/packages/24/fa/fd646836da42c49f38967ac48eaf7b6e360da3f50b94a305ef06f093a6ba/scbamtools-0.2.tar.gz (from https://pypi.org/simple/scbamtools/) (requires-python:>=3.10), version: 0.2 2025-09-13T22:05:43,063 Found link https://files.pythonhosted.org/packages/60/fe/4740173cbc7a3bc2c6b041d19db568741f4e5339a3bb12951bb652467fd1/scbamtools-0.5.tar.gz (from https://pypi.org/simple/scbamtools/) (requires-python:>=3.8), version: 0.5 2025-09-13T22:05:43,064 Found link https://files.pythonhosted.org/packages/77/33/b3f2ccfca129f9a1135d936e8ad2030b88bef0e859bf281620d9af5d6b0c/scbamtools-0.6.tar.gz (from https://pypi.org/simple/scbamtools/) (requires-python:>=3.8), version: 0.6 2025-09-13T22:05:43,064 Found link https://files.pythonhosted.org/packages/ed/c4/49dabbc8f6e5a6957f3451ec60363c7f804b1bcd2ad95eed323faa9fd6ba/scbamtools-0.8.1.tar.gz (from https://pypi.org/simple/scbamtools/) (requires-python:>=3.8), version: 0.8.1 2025-09-13T22:05:43,064 Found link https://files.pythonhosted.org/packages/f4/e3/382060f419dfa54214c760869e2272bf621f794cfabc13183ce0430f8539/scbamtools-0.8.2.tar.gz (from https://pypi.org/simple/scbamtools/) (requires-python:>=3.8), version: 0.8.2 2025-09-13T22:05:43,064 Found link https://files.pythonhosted.org/packages/58/a8/a17afb0e466cf567d8c13497d0f025c286b28da8ade10f7bb4697652cdec/scbamtools-0.8.3.tar.gz (from https://pypi.org/simple/scbamtools/) (requires-python:>=3.8), version: 0.8.3 2025-09-13T22:05:43,065 Fetching project page and analyzing links: https://www.piwheels.org/simple/scbamtools/ 2025-09-13T22:05:43,065 Getting page https://www.piwheels.org/simple/scbamtools/ 2025-09-13T22:05:43,066 Found index url https://www.piwheels.org/simple/ 2025-09-13T22:05:43,149 Fetched page https://www.piwheels.org/simple/scbamtools/ as text/html 2025-09-13T22:05:43,152 Skipping link: No binaries permitted for scbamtools: https://archive1.piwheels.org/simple/scbamtools/scbamtools-0.8.1-cp311-cp311-linux_armv6l.whl#sha256=3002fafc54998bad2b456d0f0ac48b7a694c25f60dc26d234cde386d51f7bcbc (from https://www.piwheels.org/simple/scbamtools/) (requires-python:>=3.8) 2025-09-13T22:05:43,153 Skipping link: No binaries permitted for scbamtools: https://archive1.piwheels.org/simple/scbamtools/scbamtools-0.8.1-cp311-cp311-linux_armv7l.whl#sha256=3002fafc54998bad2b456d0f0ac48b7a694c25f60dc26d234cde386d51f7bcbc (from https://www.piwheels.org/simple/scbamtools/) (requires-python:>=3.8) 2025-09-13T22:05:43,153 Skipping link: No binaries permitted for scbamtools: https://archive1.piwheels.org/simple/scbamtools/scbamtools-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=203190fcc7420b31eef2cb4b3cd8db5182b661e2056a5f6357d818fe1519224e (from https://www.piwheels.org/simple/scbamtools/) (requires-python:>=3.8) 2025-09-13T22:05:43,153 Skipping link: No binaries permitted for scbamtools: https://archive1.piwheels.org/simple/scbamtools/scbamtools-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=203190fcc7420b31eef2cb4b3cd8db5182b661e2056a5f6357d818fe1519224e (from https://www.piwheels.org/simple/scbamtools/) (requires-python:>=3.8) 2025-09-13T22:05:43,153 Skipping link: No binaries permitted for scbamtools: https://archive1.piwheels.org/simple/scbamtools/scbamtools-0.6-cp311-cp311-linux_armv6l.whl#sha256=9288a1e72295542d124c65f92013e3c61eedae50599500c2ac00821300907afb (from https://www.piwheels.org/simple/scbamtools/) (requires-python:>=3.8) 2025-09-13T22:05:43,153 Skipping link: No binaries permitted for scbamtools: https://archive1.piwheels.org/simple/scbamtools/scbamtools-0.6-cp311-cp311-linux_armv7l.whl#sha256=9288a1e72295542d124c65f92013e3c61eedae50599500c2ac00821300907afb (from https://www.piwheels.org/simple/scbamtools/) (requires-python:>=3.8) 2025-09-13T22:05:43,153 Skipping link: No binaries permitted for scbamtools: https://archive1.piwheels.org/simple/scbamtools/scbamtools-0.6-cp39-cp39-linux_armv6l.whl#sha256=404de3ce08ae3d71ac8cb8a1eb1765fd44623031d1c6dddf6ac18e89cd1599d9 (from https://www.piwheels.org/simple/scbamtools/) (requires-python:>=3.8) 2025-09-13T22:05:43,154 Skipping link: No binaries permitted for scbamtools: https://archive1.piwheels.org/simple/scbamtools/scbamtools-0.6-cp39-cp39-linux_armv7l.whl#sha256=404de3ce08ae3d71ac8cb8a1eb1765fd44623031d1c6dddf6ac18e89cd1599d9 (from https://www.piwheels.org/simple/scbamtools/) (requires-python:>=3.8) 2025-09-13T22:05:43,154 Skipping link: No binaries permitted for scbamtools: https://archive1.piwheels.org/simple/scbamtools/scbamtools-0.5-cp311-cp311-linux_armv6l.whl#sha256=9eeb10371047b47673bf1fa28614f1f47c0b6089fd1cf486ed8be089efd51140 (from https://www.piwheels.org/simple/scbamtools/) (requires-python:>=3.8) 2025-09-13T22:05:43,154 Skipping link: No binaries permitted for scbamtools: https://archive1.piwheels.org/simple/scbamtools/scbamtools-0.5-cp311-cp311-linux_armv7l.whl#sha256=9eeb10371047b47673bf1fa28614f1f47c0b6089fd1cf486ed8be089efd51140 (from https://www.piwheels.org/simple/scbamtools/) (requires-python:>=3.8) 2025-09-13T22:05:43,154 Skipping link: No binaries permitted for scbamtools: https://archive1.piwheels.org/simple/scbamtools/scbamtools-0.5-cp39-cp39-linux_armv6l.whl#sha256=44ad821dcd492f55a691e24b59160b6016e170304ae897bde1333049698ef26b (from https://www.piwheels.org/simple/scbamtools/) (requires-python:>=3.8) 2025-09-13T22:05:43,154 Skipping link: No binaries permitted for scbamtools: https://archive1.piwheels.org/simple/scbamtools/scbamtools-0.5-cp39-cp39-linux_armv7l.whl#sha256=44ad821dcd492f55a691e24b59160b6016e170304ae897bde1333049698ef26b (from https://www.piwheels.org/simple/scbamtools/) (requires-python:>=3.8) 2025-09-13T22:05:43,154 Skipping link: not a file: https://www.piwheels.org/simple/scbamtools/ 2025-09-13T22:05:43,154 Skipping link: not a file: https://pypi.org/simple/scbamtools/ 2025-09-13T22:05:43,179 Given no hashes to check 1 links for project 'scbamtools': discarding no candidates 2025-09-13T22:05:43,180 Collecting scbamtools==0.2 2025-09-13T22:05:43,181 Created temporary directory: /tmp/pip-unpack-8hj5sth9 2025-09-13T22:05:43,474 Downloading scbamtools-0.2.tar.gz (342 kB) 2025-09-13T22:05:43,581 Added scbamtools==0.2 from https://files.pythonhosted.org/packages/24/fa/fd646836da42c49f38967ac48eaf7b6e360da3f50b94a305ef06f093a6ba/scbamtools-0.2.tar.gz to build tracker '/tmp/pip-build-tracker-07v4tz48' 2025-09-13T22:05:43,582 Running setup.py (path:/tmp/pip-wheel-as4d63q3/scbamtools_10ae9b5cfe2a47348eb30c90709d810a/setup.py) egg_info for package scbamtools 2025-09-13T22:05:43,582 Created temporary directory: /tmp/pip-pip-egg-info-djwawghc 2025-09-13T22:05:43,582 Preparing metadata (setup.py): started 2025-09-13T22:05:43,583 Running command python setup.py egg_info 2025-09-13T22:05:46,103 Error compiling Cython file: 2025-09-13T22:05:46,103 ------------------------------------------------------------ 2025-09-13T22:05:46,103 ... 2025-09-13T22:05:46,103 __license__ = "MIT" 2025-09-13T22:05:46,104 __authors__ = ["Marvin Jens"] 2025-09-13T22:05:46,104 __email__ = "marvin.jens@charite.de" 2025-09-13T22:05:46,104 from types cimport * 2025-09-13T22:05:46,104 ^ 2025-09-13T22:05:46,104 ------------------------------------------------------------ 2025-09-13T22:05:46,104 scbamtools/cython/bctree.pyx:9:0: 'types.pxd' not found 2025-09-13T22:05:46,860 Error compiling Cython file: 2025-09-13T22:05:46,860 ------------------------------------------------------------ 2025-09-13T22:05:46,860 ... 2025-09-13T22:05:46,860 from libc.math cimport exp, log 2025-09-13T22:05:46,860 from libc.stdlib cimport abort, malloc, free 2025-09-13T22:05:46,860 # maps ASCII values of A,C,G,T (U) to correct bits 2025-09-13T22:05:46,860 # N is silently converted to A 2025-09-13T22:05:46,860 cdef UINT8_t letter_to_bits[256] 2025-09-13T22:05:46,860 ^ 2025-09-13T22:05:46,861 ------------------------------------------------------------ 2025-09-13T22:05:46,861 scbamtools/cython/bctree.pyx:23:5: 'UINT8_t' is not a type identifier 2025-09-13T22:05:46,862 Error compiling Cython file: 2025-09-13T22:05:46,862 ------------------------------------------------------------ 2025-09-13T22:05:46,862 ... 2025-09-13T22:05:46,862 letter_to_bits[ord('G')] = 2 2025-09-13T22:05:46,862 letter_to_bits[ord('T')] = 3 2025-09-13T22:05:46,862 letter_to_bits[ord('U')] = 3 2025-09-13T22:05:46,862 cdef UINT8_t bits_to_letters[4] 2025-09-13T22:05:46,863 ^ 2025-09-13T22:05:46,863 ------------------------------------------------------------ 2025-09-13T22:05:46,863 scbamtools/cython/bctree.pyx:42:5: 'UINT8_t' is not a type identifier 2025-09-13T22:05:46,864 Error compiling Cython file: 2025-09-13T22:05:46,864 ------------------------------------------------------------ 2025-09-13T22:05:46,865 ... 2025-09-13T22:05:46,865 for x in range(L): 2025-09-13T22:05:46,865 idx = (idx << 2) | letter_to_bits[seq[x]] 2025-09-13T22:05:46,865 return idx 2025-09-13T22:05:46,865 def index_to_seq(UINT64_t index, UINT8_t l): 2025-09-13T22:05:46,865 ^ 2025-09-13T22:05:46,865 ------------------------------------------------------------ 2025-09-13T22:05:46,865 scbamtools/cython/bctree.pyx:58:17: 'UINT64_t' is not a type identifier 2025-09-13T22:05:46,866 Error compiling Cython file: 2025-09-13T22:05:46,866 ------------------------------------------------------------ 2025-09-13T22:05:46,866 ... 2025-09-13T22:05:46,866 for x in range(L): 2025-09-13T22:05:46,866 idx = (idx << 2) | letter_to_bits[seq[x]] 2025-09-13T22:05:46,867 return idx 2025-09-13T22:05:46,867 def index_to_seq(UINT64_t index, UINT8_t l): 2025-09-13T22:05:46,867 ^ 2025-09-13T22:05:46,867 ------------------------------------------------------------ 2025-09-13T22:05:46,867 scbamtools/cython/bctree.pyx:58:33: 'UINT8_t' is not a type identifier 2025-09-13T22:05:46,867 Error compiling Cython file: 2025-09-13T22:05:46,868 ------------------------------------------------------------ 2025-09-13T22:05:46,868 ... 2025-09-13T22:05:46,868 j = index >> ((l-i-1) * 2) 2025-09-13T22:05:46,868 seq.append(nucs[j & 3]) 2025-09-13T22:05:46,868 return "".join(seq) 2025-09-13T22:05:46,868 cpdef np.ndarray[UINT64_t] hull(UINT64_t index, UINT8_t l): 2025-09-13T22:05:46,868 ^ 2025-09-13T22:05:46,869 ------------------------------------------------------------ 2025-09-13T22:05:46,869 scbamtools/cython/bctree.pyx:67:17: Invalid type. 2025-09-13T22:05:46,872 Traceback (most recent call last): 2025-09-13T22:05:46,875 File "", line 2, in 2025-09-13T22:05:46,875 exec(compile(''' 2025-09-13T22:05:46,875 ~~~~^^^^^^^^^^^^ 2025-09-13T22:05:46,875 # This is -- a caller that pip uses to run setup.py 2025-09-13T22:05:46,875 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T22:05:46,875 ...<32 lines>... 2025-09-13T22:05:46,876 exec(compile(setup_py_code, filename, "exec")) 2025-09-13T22:05:46,876 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T22:05:46,876 ''' % ('/tmp/pip-wheel-as4d63q3/scbamtools_10ae9b5cfe2a47348eb30c90709d810a/setup.py',), "", "exec")) 2025-09-13T22:05:46,876 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T22:05:46,876 File "", line 35, in 2025-09-13T22:05:46,876 File "/tmp/pip-wheel-as4d63q3/scbamtools_10ae9b5cfe2a47348eb30c90709d810a/setup.py", line 33, in 2025-09-13T22:05:46,877 ext_modules = cythonize(extensions, compiler_directives={"language_level": 3, "profile": False}), 2025-09-13T22:05:46,877 ~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T22:05:46,877 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1154, in cythonize 2025-09-13T22:05:46,877 cythonize_one(*args) 2025-09-13T22:05:46,877 ~~~~~~~~~~~~~^^^^^^^ 2025-09-13T22:05:46,877 File "/usr/local/lib/python3.13/dist-packages/Cython/Build/Dependencies.py", line 1298, in cythonize_one 2025-09-13T22:05:46,877 raise CompileError(None, pyx_file) 2025-09-13T22:05:46,878 Cython.Compiler.Errors.CompileError: scbamtools/cython/bctree.pyx 2025-09-13T22:05:46,878 Compiling scbamtools/cython/kmers.pyx because it changed. 2025-09-13T22:05:46,878 Compiling scbamtools/cython/bctree.pyx because it changed. 2025-09-13T22:05:46,878 [1/2] Cythonizing scbamtools/cython/bctree.pyx 2025-09-13T22:05:47,296 ERROR: python setup.py egg_info exited with 1 2025-09-13T22:05:47,310 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-13T22:05:47,310 exec(compile('"'"''"'"''"'"' 2025-09-13T22:05:47,310 # This is -- a caller that pip uses to run setup.py 2025-09-13T22:05:47,310 # 2025-09-13T22:05:47,310 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-13T22:05:47,310 # import from `distutils.core` to work with newer packaging standards. 2025-09-13T22:05:47,310 # - It provides a clear error message when setuptools is not installed. 2025-09-13T22:05:47,310 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-13T22:05:47,310 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-13T22:05:47,310 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-13T22:05:47,310 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-13T22:05:47,310 import os, sys, tokenize, traceback 2025-09-13T22:05:47,310 2025-09-13T22:05:47,310 try: 2025-09-13T22:05:47,310 import setuptools 2025-09-13T22:05:47,310 except ImportError: 2025-09-13T22:05:47,310 print( 2025-09-13T22:05:47,310 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-13T22:05:47,310 "the build environment with exception:", 2025-09-13T22:05:47,310 file=sys.stderr, 2025-09-13T22:05:47,310 ) 2025-09-13T22:05:47,310 traceback.print_exc() 2025-09-13T22:05:47,310 sys.exit(1) 2025-09-13T22:05:47,310 2025-09-13T22:05:47,310 __file__ = %r 2025-09-13T22:05:47,310 sys.argv[0] = __file__ 2025-09-13T22:05:47,310 2025-09-13T22:05:47,310 if os.path.exists(__file__): 2025-09-13T22:05:47,310 filename = __file__ 2025-09-13T22:05:47,310 with tokenize.open(__file__) as f: 2025-09-13T22:05:47,310 setup_py_code = f.read() 2025-09-13T22:05:47,310 else: 2025-09-13T22:05:47,310 filename = "" 2025-09-13T22:05:47,310 setup_py_code = "from setuptools import setup; setup()" 2025-09-13T22:05:47,310 2025-09-13T22:05:47,310 exec(compile(setup_py_code, filename, "exec")) 2025-09-13T22:05:47,310 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-as4d63q3/scbamtools_10ae9b5cfe2a47348eb30c90709d810a/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-djwawghc[/] 2025-09-13T22:05:47,310 [bold magenta]cwd[/]: /tmp/pip-wheel-as4d63q3/scbamtools_10ae9b5cfe2a47348eb30c90709d810a/ 2025-09-13T22:05:47,310 Preparing metadata (setup.py): finished with status 'error' 2025-09-13T22:05:47,311 ERROR: metadata generation failed 2025-09-13T22:05:47,317 Exception information: 2025-09-13T22:05:47,317 Traceback (most recent call last): 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-13T22:05:47,317 call_subprocess( 2025-09-13T22:05:47,317 ~~~~~~~~~~~~~~~^ 2025-09-13T22:05:47,317 args, 2025-09-13T22:05:47,317 ^^^^^ 2025-09-13T22:05:47,317 ...<2 lines>... 2025-09-13T22:05:47,317 spinner=spinner, 2025-09-13T22:05:47,317 ^^^^^^^^^^^^^^^^ 2025-09-13T22:05:47,317 ) 2025-09-13T22:05:47,317 ^ 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-13T22:05:47,317 raise error 2025-09-13T22:05:47,317 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-13T22:05:47,317 2025-09-13T22:05:47,317 The above exception was the direct cause of the following exception: 2025-09-13T22:05:47,317 2025-09-13T22:05:47,317 Traceback (most recent call last): 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-13T22:05:47,317 status = _inner_run() 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-13T22:05:47,317 return self.run(options, args) 2025-09-13T22:05:47,317 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-13T22:05:47,317 return func(self, options, args) 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-13T22:05:47,317 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-13T22:05:47,317 result = self._result = resolver.resolve( 2025-09-13T22:05:47,317 ~~~~~~~~~~~~~~~~^ 2025-09-13T22:05:47,317 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-13T22:05:47,317 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T22:05:47,317 ) 2025-09-13T22:05:47,317 ^ 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-13T22:05:47,317 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-13T22:05:47,317 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-13T22:05:47,317 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-13T22:05:47,317 if not criterion.candidates: 2025-09-13T22:05:47,317 ^^^^^^^^^^^^^^^^^^^^ 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-13T22:05:47,317 return bool(self._sequence) 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-13T22:05:47,317 self._bool = any(self) 2025-09-13T22:05:47,317 ~~~^^^^^^ 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-13T22:05:47,317 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-13T22:05:47,317 ^^^^^^^^ 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-13T22:05:47,317 candidate = func() 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-13T22:05:47,317 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-13T22:05:47,317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-13T22:05:47,317 link, template, name, version 2025-09-13T22:05:47,317 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T22:05:47,317 ) 2025-09-13T22:05:47,317 ^ 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-13T22:05:47,317 self._link_candidate_cache[link] = LinkCandidate( 2025-09-13T22:05:47,317 ~~~~~~~~~~~~~^ 2025-09-13T22:05:47,317 link, 2025-09-13T22:05:47,317 ^^^^^ 2025-09-13T22:05:47,317 ...<3 lines>... 2025-09-13T22:05:47,317 version=version, 2025-09-13T22:05:47,317 ^^^^^^^^^^^^^^^^ 2025-09-13T22:05:47,317 ) 2025-09-13T22:05:47,317 ^ 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-13T22:05:47,317 super().__init__( 2025-09-13T22:05:47,317 ~~~~~~~~~~~~~~~~^ 2025-09-13T22:05:47,317 link=link, 2025-09-13T22:05:47,317 ^^^^^^^^^^ 2025-09-13T22:05:47,317 ...<4 lines>... 2025-09-13T22:05:47,317 version=version, 2025-09-13T22:05:47,317 ^^^^^^^^^^^^^^^^ 2025-09-13T22:05:47,317 ) 2025-09-13T22:05:47,317 ^ 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-13T22:05:47,317 self.dist = self._prepare() 2025-09-13T22:05:47,317 ~~~~~~~~~~~~~^^ 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-13T22:05:47,317 dist = self._prepare_distribution() 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-13T22:05:47,317 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-13T22:05:47,317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-13T22:05:47,317 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-13T22:05:47,317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-13T22:05:47,317 dist = _get_prepared_distribution( 2025-09-13T22:05:47,317 req, 2025-09-13T22:05:47,317 ...<3 lines>... 2025-09-13T22:05:47,317 self.check_build_deps, 2025-09-13T22:05:47,317 ) 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-13T22:05:47,317 abstract_dist.prepare_distribution_metadata( 2025-09-13T22:05:47,317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-13T22:05:47,317 finder, build_isolation, check_build_deps 2025-09-13T22:05:47,317 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T22:05:47,317 ) 2025-09-13T22:05:47,317 ^ 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-13T22:05:47,317 self.req.prepare_metadata() 2025-09-13T22:05:47,317 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-13T22:05:47,317 self.metadata_directory = generate_metadata_legacy( 2025-09-13T22:05:47,317 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-13T22:05:47,317 build_env=self.build_env, 2025-09-13T22:05:47,317 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-13T22:05:47,317 ...<3 lines>... 2025-09-13T22:05:47,317 details=details, 2025-09-13T22:05:47,317 ^^^^^^^^^^^^^^^^ 2025-09-13T22:05:47,317 ) 2025-09-13T22:05:47,317 ^ 2025-09-13T22:05:47,317 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-13T22:05:47,317 raise MetadataGenerationFailed(package_details=details) from error 2025-09-13T22:05:47,317 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-13T22:05:47,341 Removed scbamtools==0.2 from https://files.pythonhosted.org/packages/24/fa/fd646836da42c49f38967ac48eaf7b6e360da3f50b94a305ef06f093a6ba/scbamtools-0.2.tar.gz from build tracker '/tmp/pip-build-tracker-07v4tz48' 2025-09-13T22:05:47,341 Removed build tracker: '/tmp/pip-build-tracker-07v4tz48'