2025-09-14T03:55:01,131 Created temporary directory: /tmp/pip-build-tracker-mokrnd4z 2025-09-14T03:55:01,131 Initialized build tracking at /tmp/pip-build-tracker-mokrnd4z 2025-09-14T03:55:01,131 Created build tracker: /tmp/pip-build-tracker-mokrnd4z 2025-09-14T03:55:01,132 Entered build tracker: /tmp/pip-build-tracker-mokrnd4z 2025-09-14T03:55:01,132 Created temporary directory: /tmp/pip-wheel-560fi910 2025-09-14T03:55:01,135 Created temporary directory: /tmp/pip-ephem-wheel-cache-ahdimiy_ 2025-09-14T03:55:01,192 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-14T03:55:01,194 2 location(s) to search for versions of yeastvision: 2025-09-14T03:55:01,194 * https://pypi.org/simple/yeastvision/ 2025-09-14T03:55:01,194 * https://www.piwheels.org/simple/yeastvision/ 2025-09-14T03:55:01,195 Fetching project page and analyzing links: https://pypi.org/simple/yeastvision/ 2025-09-14T03:55:01,195 Getting page https://pypi.org/simple/yeastvision/ 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https://archive1.piwheels.org/simple/yeastvision/yeastvision-0.1.9-py3-none-any.whl#sha256=118ab6fc6a400fa5919b12402de44f993e826fd7184ed5d986bb8ea09b0d1c9c (from https://www.piwheels.org/simple/yeastvision/) 2025-09-14T03:55:01,561 Skipping link: No binaries permitted for yeastvision: https://archive1.piwheels.org/simple/yeastvision/yeastvision-0.1.7-py3-none-any.whl#sha256=b993b70be2e5052db4d5bb94f76f5a8afd7c5fec9cc85ab30e8d2b89eadd4737 (from https://www.piwheels.org/simple/yeastvision/) 2025-09-14T03:55:01,561 Skipping link: No binaries permitted for yeastvision: https://archive1.piwheels.org/simple/yeastvision/yeastvision-0.1.6-py3-none-any.whl#sha256=49b9b0f187deacb09f3f853758c3cc904c85bf60a4a68fe0d4307b717b79e3db (from https://www.piwheels.org/simple/yeastvision/) 2025-09-14T03:55:01,561 Skipping link: No binaries permitted for yeastvision: https://archive1.piwheels.org/simple/yeastvision/yeastvision-0.1.5-py3-none-any.whl#sha256=988943c0be559f6f59afd41a4a1e92a803d35599482ba134d6161c6fd5256dc6 (from https://www.piwheels.org/simple/yeastvision/) 2025-09-14T03:55:01,562 Skipping link: No binaries permitted for yeastvision: https://archive1.piwheels.org/simple/yeastvision/yeastvision-0.1.4-py3-none-any.whl#sha256=3cdcc0dba9eba6737d04dccc4a9c152b7e24803d8ed3ef3b349ae36afb02d211 (from https://www.piwheels.org/simple/yeastvision/) 2025-09-14T03:55:01,562 Skipping link: No binaries permitted for yeastvision: https://archive1.piwheels.org/simple/yeastvision/yeastvision-0.1.3-py3-none-any.whl#sha256=1f707bdf6b3e2bc517cbc5beef4b6106d444fee6491b7aedd4d77208030e3b82 (from https://www.piwheels.org/simple/yeastvision/) 2025-09-14T03:55:01,562 Skipping link: No binaries permitted for yeastvision: https://archive1.piwheels.org/simple/yeastvision/yeastvision-0.1.1-py3-none-any.whl#sha256=cd699d2cc3ab7373e2fa2cfd67f5623429fad32c7fa2086ead92e5b14eae8204 (from https://www.piwheels.org/simple/yeastvision/) 2025-09-14T03:55:01,562 Skipping link: No binaries permitted for yeastvision: https://archive1.piwheels.org/simple/yeastvision/yeastvision-0.1.0-py3-none-any.whl#sha256=2cb0885d820f2c65a79d2f6f3c407a01d324beff9bf2e0b28c2df5574566ac26 (from https://www.piwheels.org/simple/yeastvision/) 2025-09-14T03:55:01,562 Skipping link: not a file: https://www.piwheels.org/simple/yeastvision/ 2025-09-14T03:55:01,562 Skipping link: not a file: https://pypi.org/simple/yeastvision/ 2025-09-14T03:55:01,592 Given no hashes to check 1 links for project 'yeastvision': discarding no candidates 2025-09-14T03:55:01,593 Collecting yeastvision==0.1.33 2025-09-14T03:55:01,594 Created temporary directory: /tmp/pip-unpack-fxsvc23o 2025-09-14T03:55:02,154 Downloading yeastvision-0.1.33.tar.gz (59.3 MB) 2025-09-14T03:55:18,841 Added yeastvision==0.1.33 from https://files.pythonhosted.org/packages/d6/23/51f9681bac3f97278c14a3a26e00e55b89a9f272fd62f94913e0e8841c58/yeastvision-0.1.33.tar.gz to build tracker '/tmp/pip-build-tracker-mokrnd4z' 2025-09-14T03:55:18,842 Running setup.py (path:/tmp/pip-wheel-560fi910/yeastvision_21904c15ad984de9a0d1d7c48b0421d7/setup.py) egg_info for package yeastvision 2025-09-14T03:55:18,842 Created temporary directory: /tmp/pip-pip-egg-info-xwusnzcs 2025-09-14T03:55:18,842 Preparing metadata (setup.py): started 2025-09-14T03:55:18,843 Running command python setup.py egg_info 2025-09-14T03:55:19,492 Warning: 'classifiers' should be a list, got type 'tuple' 2025-09-14T03:55:19,643 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-14T03:55:19,643 !! 2025-09-14T03:55:19,643 ******************************************************************************** 2025-09-14T03:55:19,644 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-14T03:55:19,644 License :: OSI Approved :: BSD License 2025-09-14T03:55:19,644 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-14T03:55:19,644 ******************************************************************************** 2025-09-14T03:55:19,644 !! 2025-09-14T03:55:19,645 self._finalize_license_expression() 2025-09-14T03:55:19,727 label_0.npz 2025-09-14T03:55:19,727 img_000000179_Ph3_000_cp_masks.tif 2025-09-14T03:55:19,727 img_000000179_Ph3_000.tif 2025-09-14T03:55:19,728 img_000000178_Ph3_000_cp_masks.tif 2025-09-14T03:55:19,728 img_000000178_Ph3_000.tif 2025-09-14T03:55:19,728 img_000000177_Ph3_000_cp_masks.tif 2025-09-14T03:55:19,728 img_000000177_Ph3_000.tif 2025-09-14T03:55:19,728 img_000000176_Ph3_000_cp_masks.tif 2025-09-14T03:55:19,728 img_000000176_Ph3_000.tif 2025-09-14T03:55:19,728 img_000000175_Ph3_000_cp_masks.tif 2025-09-14T03:55:19,728 img_000000175_Ph3_000.tif 2025-09-14T03:55:19,728 img_000000174_Ph3_000_cp_masks.tif 2025-09-14T03:55:19,728 img_000000174_Ph3_000.tif 2025-09-14T03:55:19,729 img_000000173_Ph3_000_cp_masks.tif 2025-09-14T03:55:19,729 img_000000173_Ph3_000.tif 2025-09-14T03:55:19,729 img_000000172_Ph3_000_cp_masks.tif 2025-09-14T03:55:19,729 img_000000172_Ph3_000.tif 2025-09-14T03:55:19,729 img_000000171_Ph3_000_cp_masks.tif 2025-09-14T03:55:19,729 img_000000171_Ph3_000.tif 2025-09-14T03:55:19,729 img_000000170_Ph3_000_cp_masks.tif 2025-09-14T03:55:19,729 img_000000170_Ph3_000.tif 2025-09-14T03:55:19,729 .DS_Store 2025-09-14T03:55:19,729 running egg_info 2025-09-14T03:55:19,805 creating /tmp/pip-pip-egg-info-xwusnzcs/yeastvision.egg-info 2025-09-14T03:55:19,805 writing /tmp/pip-pip-egg-info-xwusnzcs/yeastvision.egg-info/PKG-INFO 2025-09-14T03:55:19,807 writing dependency_links to /tmp/pip-pip-egg-info-xwusnzcs/yeastvision.egg-info/dependency_links.txt 2025-09-14T03:55:19,807 writing entry points to /tmp/pip-pip-egg-info-xwusnzcs/yeastvision.egg-info/entry_points.txt 2025-09-14T03:55:19,808 writing requirements to /tmp/pip-pip-egg-info-xwusnzcs/yeastvision.egg-info/requires.txt 2025-09-14T03:55:19,808 writing top-level names to /tmp/pip-pip-egg-info-xwusnzcs/yeastvision.egg-info/top_level.txt 2025-09-14T03:55:19,809 writing manifest file '/tmp/pip-pip-egg-info-xwusnzcs/yeastvision.egg-info/SOURCES.txt' 2025-09-14T03:55:20,025 reading manifest file '/tmp/pip-pip-egg-info-xwusnzcs/yeastvision.egg-info/SOURCES.txt' 2025-09-14T03:55:20,026 adding license file 'LICENSE' 2025-09-14T03:55:20,030 writing manifest file '/tmp/pip-pip-egg-info-xwusnzcs/yeastvision.egg-info/SOURCES.txt' 2025-09-14T03:55:20,125 Preparing metadata (setup.py): finished with status 'done' 2025-09-14T03:55:20,130 Source in /tmp/pip-wheel-560fi910/yeastvision_21904c15ad984de9a0d1d7c48b0421d7 has version 0.1.33, which satisfies requirement yeastvision==0.1.33 from https://files.pythonhosted.org/packages/d6/23/51f9681bac3f97278c14a3a26e00e55b89a9f272fd62f94913e0e8841c58/yeastvision-0.1.33.tar.gz 2025-09-14T03:55:20,131 Removed yeastvision==0.1.33 from https://files.pythonhosted.org/packages/d6/23/51f9681bac3f97278c14a3a26e00e55b89a9f272fd62f94913e0e8841c58/yeastvision-0.1.33.tar.gz from build tracker '/tmp/pip-build-tracker-mokrnd4z' 2025-09-14T03:55:20,139 Created temporary directory: /tmp/pip-unpack-q2n_jo1u 2025-09-14T03:55:20,139 Created temporary directory: /tmp/pip-unpack-167b1sno 2025-09-14T03:55:20,139 Building wheels for collected packages: yeastvision 2025-09-14T03:55:20,141 Created temporary directory: /tmp/pip-wheel-9kks6d4g 2025-09-14T03:55:20,141 DEPRECATION: Building 'yeastvision' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'yeastvision'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-14T03:55:20,142 Building wheel for yeastvision (setup.py): started 2025-09-14T03:55:20,143 Destination directory: /tmp/pip-wheel-9kks6d4g 2025-09-14T03:55:20,143 Running command python setup.py bdist_wheel 2025-09-14T03:55:20,659 label_0.npz 2025-09-14T03:55:20,659 img_000000179_Ph3_000_cp_masks.tif 2025-09-14T03:55:20,659 img_000000179_Ph3_000.tif 2025-09-14T03:55:20,659 img_000000178_Ph3_000_cp_masks.tif 2025-09-14T03:55:20,659 img_000000178_Ph3_000.tif 2025-09-14T03:55:20,660 img_000000177_Ph3_000_cp_masks.tif 2025-09-14T03:55:20,660 img_000000177_Ph3_000.tif 2025-09-14T03:55:20,660 img_000000176_Ph3_000_cp_masks.tif 2025-09-14T03:55:20,660 img_000000176_Ph3_000.tif 2025-09-14T03:55:20,660 img_000000175_Ph3_000_cp_masks.tif 2025-09-14T03:55:20,660 img_000000175_Ph3_000.tif 2025-09-14T03:55:20,660 img_000000174_Ph3_000_cp_masks.tif 2025-09-14T03:55:20,660 img_000000174_Ph3_000.tif 2025-09-14T03:55:20,660 img_000000173_Ph3_000_cp_masks.tif 2025-09-14T03:55:20,660 img_000000173_Ph3_000.tif 2025-09-14T03:55:20,660 img_000000172_Ph3_000_cp_masks.tif 2025-09-14T03:55:20,661 img_000000172_Ph3_000.tif 2025-09-14T03:55:20,661 img_000000171_Ph3_000_cp_masks.tif 2025-09-14T03:55:20,661 img_000000171_Ph3_000.tif 2025-09-14T03:55:20,661 img_000000170_Ph3_000_cp_masks.tif 2025-09-14T03:55:20,661 img_000000170_Ph3_000.tif 2025-09-14T03:55:20,661 .DS_Store 2025-09-14T03:55:20,813 Warning: 'classifiers' should be a list, got type 'tuple' 2025-09-14T03:55:20,955 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-14T03:55:20,955 !! 2025-09-14T03:55:20,955 ******************************************************************************** 2025-09-14T03:55:20,956 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-14T03:55:20,956 License :: OSI Approved :: BSD License 2025-09-14T03:55:20,956 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-14T03:55:20,956 ******************************************************************************** 2025-09-14T03:55:20,956 !! 2025-09-14T03:55:20,956 self._finalize_license_expression() 2025-09-14T03:55:20,984 running bdist_wheel 2025-09-14T03:55:21,502 running build 2025-09-14T03:55:21,503 running build_py 2025-09-14T03:55:21,572 creating build/lib/yeastvision 2025-09-14T03:55:21,573 copying yeastvision/utils.py -> build/lib/yeastvision 2025-09-14T03:55:21,574 copying yeastvision/install_weights.py -> build/lib/yeastvision 2025-09-14T03:55:21,575 copying yeastvision/__main__.py -> build/lib/yeastvision 2025-09-14T03:55:21,576 copying yeastvision/__init__.py -> build/lib/yeastvision 2025-09-14T03:55:21,577 creating build/lib/yeastvision/data 2025-09-14T03:55:21,578 copying yeastvision/data/utils.py -> build/lib/yeastvision/data 2025-09-14T03:55:21,578 copying yeastvision/data/ims.py -> build/lib/yeastvision/data 2025-09-14T03:55:21,579 copying yeastvision/data/__init__.py -> build/lib/yeastvision/data 2025-09-14T03:55:21,580 creating build/lib/yeastvision/plot 2025-09-14T03:55:21,581 copying yeastvision/plot/utils.py -> build/lib/yeastvision/plot 2025-09-14T03:55:21,581 copying yeastvision/plot/types.py -> build/lib/yeastvision/plot 2025-09-14T03:55:21,582 copying yeastvision/plot/plot.py -> build/lib/yeastvision/plot 2025-09-14T03:55:21,583 copying yeastvision/plot/cell_table.py -> build/lib/yeastvision/plot 2025-09-14T03:55:21,584 copying yeastvision/plot/__init__.py -> build/lib/yeastvision/plot 2025-09-14T03:55:21,585 creating build/lib/yeastvision/track 2025-09-14T03:55:21,585 copying yeastvision/track/utils.py -> build/lib/yeastvision/track 2025-09-14T03:55:21,586 copying yeastvision/track/track.py -> build/lib/yeastvision/track 2025-09-14T03:55:21,587 copying yeastvision/track/mat.py -> build/lib/yeastvision/track 2025-09-14T03:55:21,587 copying yeastvision/track/lineage.py -> build/lib/yeastvision/track 2025-09-14T03:55:21,588 copying yeastvision/track/hungarian_track.py -> build/lib/yeastvision/track 2025-09-14T03:55:21,589 copying yeastvision/track/data.py -> build/lib/yeastvision/track 2025-09-14T03:55:21,590 copying yeastvision/track/cell.py -> build/lib/yeastvision/track 2025-09-14T03:55:21,590 copying yeastvision/track/__init__.py -> build/lib/yeastvision/track 2025-09-14T03:55:21,591 creating build/lib/yeastvision/models 2025-09-14T03:55:21,592 copying yeastvision/models/utils.py -> build/lib/yeastvision/models 2025-09-14T03:55:21,593 copying yeastvision/models/model.py -> build/lib/yeastvision/models 2025-09-14T03:55:21,593 copying yeastvision/models/cp.py -> build/lib/yeastvision/models 2025-09-14T03:55:21,594 copying yeastvision/models/__init__.py -> build/lib/yeastvision/models 2025-09-14T03:55:21,595 creating build/lib/yeastvision/ims 2025-09-14T03:55:21,596 copying yeastvision/ims/interpolate.py -> build/lib/yeastvision/ims 2025-09-14T03:55:21,596 copying yeastvision/ims/im_funcs.py -> build/lib/yeastvision/ims 2025-09-14T03:55:21,597 copying yeastvision/ims/__init__.py -> build/lib/yeastvision/ims 2025-09-14T03:55:21,598 creating build/lib/yeastvision/ims/rife_model 2025-09-14T03:55:21,598 copying yeastvision/ims/rife_model/warplayer.py -> build/lib/yeastvision/ims/rife_model 2025-09-14T03:55:21,599 copying yeastvision/ims/rife_model/refine_2R.py -> build/lib/yeastvision/ims/rife_model 2025-09-14T03:55:21,600 copying yeastvision/ims/rife_model/refine.py -> build/lib/yeastvision/ims/rife_model 2025-09-14T03:55:21,601 copying yeastvision/ims/rife_model/loss.py -> build/lib/yeastvision/ims/rife_model 2025-09-14T03:55:21,601 copying yeastvision/ims/rife_model/laplacian.py -> build/lib/yeastvision/ims/rife_model 2025-09-14T03:55:21,602 copying yeastvision/ims/rife_model/__init__.py -> build/lib/yeastvision/ims/rife_model 2025-09-14T03:55:21,603 copying yeastvision/ims/rife_model/RIFE.py -> build/lib/yeastvision/ims/rife_model 2025-09-14T03:55:21,603 copying yeastvision/ims/rife_model/IFNet_m.py -> build/lib/yeastvision/ims/rife_model 2025-09-14T03:55:21,604 copying yeastvision/ims/rife_model/IFNet_2R.py -> build/lib/yeastvision/ims/rife_model 2025-09-14T03:55:21,605 copying yeastvision/ims/rife_model/IFNet.py -> build/lib/yeastvision/ims/rife_model 2025-09-14T03:55:21,606 creating build/lib/yeastvision/docs 2025-09-14T03:55:21,606 copying yeastvision/docs/__init__.py -> build/lib/yeastvision/docs 2025-09-14T03:55:21,607 creating build/lib/yeastvision/docs/figs 2025-09-14T03:55:21,608 copying yeastvision/docs/figs/__init__.py -> build/lib/yeastvision/docs/figs 2025-09-14T03:55:21,609 creating build/lib/yeastvision/ims/rife_model/pytorch_msssim 2025-09-14T03:55:21,609 copying yeastvision/ims/rife_model/pytorch_msssim/__init__.py -> build/lib/yeastvision/ims/rife_model/pytorch_msssim 2025-09-14T03:55:21,610 creating build/lib/yeastvision/parts 2025-09-14T03:55:21,611 copying yeastvision/parts/workers.py -> build/lib/yeastvision/parts 2025-09-14T03:55:21,611 copying yeastvision/parts/utils.py -> build/lib/yeastvision/parts 2025-09-14T03:55:21,612 copying yeastvision/parts/menu.py -> build/lib/yeastvision/parts 2025-09-14T03:55:21,613 copying yeastvision/parts/guiparts.py -> build/lib/yeastvision/parts 2025-09-14T03:55:21,613 copying yeastvision/parts/dialogs.py -> build/lib/yeastvision/parts 2025-09-14T03:55:21,614 copying yeastvision/parts/canvas.py -> build/lib/yeastvision/parts 2025-09-14T03:55:21,615 copying yeastvision/parts/__init__.py -> build/lib/yeastvision/parts 2025-09-14T03:55:21,616 creating build/lib/yeastvision/flou 2025-09-14T03:55:21,617 copying yeastvision/flou/utils.py -> build/lib/yeastvision/flou 2025-09-14T03:55:21,617 copying yeastvision/flou/blob_detect.py -> build/lib/yeastvision/flou 2025-09-14T03:55:21,618 copying yeastvision/flou/__init__.py -> build/lib/yeastvision/flou 2025-09-14T03:55:21,619 creating build/lib/yeastvision/disk 2025-09-14T03:55:21,619 copying yeastvision/disk/reader.py -> build/lib/yeastvision/disk 2025-09-14T03:55:21,620 copying yeastvision/disk/io.py -> build/lib/yeastvision/disk 2025-09-14T03:55:21,621 copying yeastvision/disk/__init__.py -> build/lib/yeastvision/disk 2025-09-14T03:55:21,622 creating build/lib/yeastvision/models/proSeg 2025-09-14T03:55:21,622 copying yeastvision/models/proSeg/model.py -> build/lib/yeastvision/models/proSeg 2025-09-14T03:55:21,623 copying yeastvision/models/proSeg/__init__.py -> build/lib/yeastvision/models/proSeg 2025-09-14T03:55:21,624 creating build/lib/yeastvision/models/budSeg 2025-09-14T03:55:21,624 copying yeastvision/models/budSeg/model.py -> build/lib/yeastvision/models/budSeg 2025-09-14T03:55:21,625 copying yeastvision/models/budSeg/__init__.py -> build/lib/yeastvision/models/budSeg 2025-09-14T03:55:21,626 creating build/lib/yeastvision/models/matSeg 2025-09-14T03:55:21,627 copying yeastvision/models/matSeg/model.py -> build/lib/yeastvision/models/matSeg 2025-09-14T03:55:21,628 copying yeastvision/models/matSeg/__init__.py -> build/lib/yeastvision/models/matSeg 2025-09-14T03:55:21,629 creating build/lib/yeastvision/models/spoSeg 2025-09-14T03:55:21,629 copying yeastvision/models/spoSeg/model.py -> build/lib/yeastvision/models/spoSeg 2025-09-14T03:55:21,630 copying yeastvision/models/spoSeg/__init__.py -> build/lib/yeastvision/models/spoSeg 2025-09-14T03:55:21,630 running egg_info 2025-09-14T03:55:21,699 writing yeastvision.egg-info/PKG-INFO 2025-09-14T03:55:21,701 writing dependency_links to yeastvision.egg-info/dependency_links.txt 2025-09-14T03:55:21,701 writing entry points to yeastvision.egg-info/entry_points.txt 2025-09-14T03:55:21,703 writing requirements to yeastvision.egg-info/requires.txt 2025-09-14T03:55:21,703 writing top-level names to yeastvision.egg-info/top_level.txt 2025-09-14T03:55:21,782 reading manifest file 'yeastvision.egg-info/SOURCES.txt' 2025-09-14T03:55:21,788 adding license file 'LICENSE' 2025-09-14T03:55:21,793 writing manifest file 'yeastvision.egg-info/SOURCES.txt' 2025-09-14T03:55:21,799 copying yeastvision/models/budSeg/budSeg -> build/lib/yeastvision/models/budSeg 2025-09-14T03:55:21,965 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-14T03:55:21,966 !! 2025-09-14T03:55:21,966 ******************************************************************************** 2025-09-14T03:55:21,966 Please avoid running ``setup.py`` directly. 2025-09-14T03:55:21,966 Instead, use pypa/build, pypa/installer or other 2025-09-14T03:55:21,966 standards-based tools. 2025-09-14T03:55:21,966 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-14T03:55:21,966 or your builds will no longer be supported. 2025-09-14T03:55:21,966 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-14T03:55:21,967 ******************************************************************************** 2025-09-14T03:55:21,967 !! 2025-09-14T03:55:21,967 self.initialize_options() 2025-09-14T03:55:22,035 installing to build/bdist.linux-armv7l/wheel 2025-09-14T03:55:22,036 running install 2025-09-14T03:55:22,058 running install_lib 2025-09-14T03:55:22,134 creating build/bdist.linux-armv7l/wheel 2025-09-14T03:55:22,135 creating build/bdist.linux-armv7l/wheel/yeastvision 2025-09-14T03:55:22,135 creating build/bdist.linux-armv7l/wheel/yeastvision/disk 2025-09-14T03:55:22,136 copying build/lib/yeastvision/disk/__init__.py -> build/bdist.linux-armv7l/wheel/./yeastvision/disk 2025-09-14T03:55:22,137 copying build/lib/yeastvision/disk/io.py -> build/bdist.linux-armv7l/wheel/./yeastvision/disk 2025-09-14T03:55:22,137 copying build/lib/yeastvision/disk/reader.py -> build/bdist.linux-armv7l/wheel/./yeastvision/disk 2025-09-14T03:55:22,138 creating build/bdist.linux-armv7l/wheel/yeastvision/flou 2025-09-14T03:55:22,138 copying build/lib/yeastvision/flou/__init__.py -> build/bdist.linux-armv7l/wheel/./yeastvision/flou 2025-09-14T03:55:22,139 copying build/lib/yeastvision/flou/blob_detect.py -> build/bdist.linux-armv7l/wheel/./yeastvision/flou 2025-09-14T03:55:22,140 copying build/lib/yeastvision/flou/utils.py -> build/bdist.linux-armv7l/wheel/./yeastvision/flou 2025-09-14T03:55:22,140 creating build/bdist.linux-armv7l/wheel/yeastvision/parts 2025-09-14T03:55:22,141 copying build/lib/yeastvision/parts/__init__.py -> build/bdist.linux-armv7l/wheel/./yeastvision/parts 2025-09-14T03:55:22,141 copying build/lib/yeastvision/parts/canvas.py -> build/bdist.linux-armv7l/wheel/./yeastvision/parts 2025-09-14T03:55:22,142 copying build/lib/yeastvision/parts/dialogs.py -> build/bdist.linux-armv7l/wheel/./yeastvision/parts 2025-09-14T03:55:22,143 copying build/lib/yeastvision/parts/guiparts.py -> build/bdist.linux-armv7l/wheel/./yeastvision/parts 2025-09-14T03:55:22,143 copying build/lib/yeastvision/parts/menu.py -> build/bdist.linux-armv7l/wheel/./yeastvision/parts 2025-09-14T03:55:22,144 copying build/lib/yeastvision/parts/utils.py -> build/bdist.linux-armv7l/wheel/./yeastvision/parts 2025-09-14T03:55:22,144 copying build/lib/yeastvision/parts/workers.py -> build/bdist.linux-armv7l/wheel/./yeastvision/parts 2025-09-14T03:55:22,145 creating build/bdist.linux-armv7l/wheel/yeastvision/docs 2025-09-14T03:55:22,146 creating build/bdist.linux-armv7l/wheel/yeastvision/docs/figs 2025-09-14T03:55:22,146 copying build/lib/yeastvision/docs/figs/__init__.py -> build/bdist.linux-armv7l/wheel/./yeastvision/docs/figs 2025-09-14T03:55:22,147 copying build/lib/yeastvision/docs/__init__.py -> build/bdist.linux-armv7l/wheel/./yeastvision/docs 2025-09-14T03:55:22,147 creating build/bdist.linux-armv7l/wheel/yeastvision/ims 2025-09-14T03:55:22,148 creating build/bdist.linux-armv7l/wheel/yeastvision/ims/rife_model 2025-09-14T03:55:22,149 creating build/bdist.linux-armv7l/wheel/yeastvision/ims/rife_model/pytorch_msssim 2025-09-14T03:55:22,149 copying build/lib/yeastvision/ims/rife_model/pytorch_msssim/__init__.py -> build/bdist.linux-armv7l/wheel/./yeastvision/ims/rife_model/pytorch_msssim 2025-09-14T03:55:22,150 copying build/lib/yeastvision/ims/rife_model/IFNet.py -> build/bdist.linux-armv7l/wheel/./yeastvision/ims/rife_model 2025-09-14T03:55:22,150 copying build/lib/yeastvision/ims/rife_model/IFNet_2R.py -> build/bdist.linux-armv7l/wheel/./yeastvision/ims/rife_model 2025-09-14T03:55:22,151 copying build/lib/yeastvision/ims/rife_model/IFNet_m.py -> build/bdist.linux-armv7l/wheel/./yeastvision/ims/rife_model 2025-09-14T03:55:22,152 copying build/lib/yeastvision/ims/rife_model/RIFE.py -> build/bdist.linux-armv7l/wheel/./yeastvision/ims/rife_model 2025-09-14T03:55:22,152 copying build/lib/yeastvision/ims/rife_model/__init__.py -> build/bdist.linux-armv7l/wheel/./yeastvision/ims/rife_model 2025-09-14T03:55:22,153 copying build/lib/yeastvision/ims/rife_model/laplacian.py -> build/bdist.linux-armv7l/wheel/./yeastvision/ims/rife_model 2025-09-14T03:55:22,153 copying build/lib/yeastvision/ims/rife_model/loss.py -> build/bdist.linux-armv7l/wheel/./yeastvision/ims/rife_model 2025-09-14T03:55:22,154 copying build/lib/yeastvision/ims/rife_model/refine.py -> build/bdist.linux-armv7l/wheel/./yeastvision/ims/rife_model 2025-09-14T03:55:22,154 copying build/lib/yeastvision/ims/rife_model/refine_2R.py -> build/bdist.linux-armv7l/wheel/./yeastvision/ims/rife_model 2025-09-14T03:55:22,155 copying build/lib/yeastvision/ims/rife_model/warplayer.py -> build/bdist.linux-armv7l/wheel/./yeastvision/ims/rife_model 2025-09-14T03:55:22,156 copying build/lib/yeastvision/ims/__init__.py -> build/bdist.linux-armv7l/wheel/./yeastvision/ims 2025-09-14T03:55:22,156 copying build/lib/yeastvision/ims/im_funcs.py -> build/bdist.linux-armv7l/wheel/./yeastvision/ims 2025-09-14T03:55:22,157 copying build/lib/yeastvision/ims/interpolate.py -> build/bdist.linux-armv7l/wheel/./yeastvision/ims 2025-09-14T03:55:22,157 creating build/bdist.linux-armv7l/wheel/yeastvision/models 2025-09-14T03:55:22,158 creating build/bdist.linux-armv7l/wheel/yeastvision/models/spoSeg 2025-09-14T03:55:22,158 copying build/lib/yeastvision/models/spoSeg/__init__.py -> build/bdist.linux-armv7l/wheel/./yeastvision/models/spoSeg 2025-09-14T03:55:22,159 copying build/lib/yeastvision/models/spoSeg/model.py -> build/bdist.linux-armv7l/wheel/./yeastvision/models/spoSeg 2025-09-14T03:55:22,160 creating build/bdist.linux-armv7l/wheel/yeastvision/models/matSeg 2025-09-14T03:55:22,160 copying build/lib/yeastvision/models/matSeg/__init__.py -> build/bdist.linux-armv7l/wheel/./yeastvision/models/matSeg 2025-09-14T03:55:22,161 copying build/lib/yeastvision/models/matSeg/model.py -> build/bdist.linux-armv7l/wheel/./yeastvision/models/matSeg 2025-09-14T03:55:22,161 creating build/bdist.linux-armv7l/wheel/yeastvision/models/budSeg 2025-09-14T03:55:22,162 copying build/lib/yeastvision/models/budSeg/budSeg -> build/bdist.linux-armv7l/wheel/./yeastvision/models/budSeg 2025-09-14T03:55:22,256 copying build/lib/yeastvision/models/budSeg/__init__.py -> build/bdist.linux-armv7l/wheel/./yeastvision/models/budSeg 2025-09-14T03:55:22,256 copying build/lib/yeastvision/models/budSeg/model.py -> build/bdist.linux-armv7l/wheel/./yeastvision/models/budSeg 2025-09-14T03:55:22,257 creating build/bdist.linux-armv7l/wheel/yeastvision/models/proSeg 2025-09-14T03:55:22,257 copying build/lib/yeastvision/models/proSeg/__init__.py -> build/bdist.linux-armv7l/wheel/./yeastvision/models/proSeg 2025-09-14T03:55:22,258 copying build/lib/yeastvision/models/proSeg/model.py -> build/bdist.linux-armv7l/wheel/./yeastvision/models/proSeg 2025-09-14T03:55:22,259 copying build/lib/yeastvision/models/__init__.py -> build/bdist.linux-armv7l/wheel/./yeastvision/models 2025-09-14T03:55:22,259 copying build/lib/yeastvision/models/cp.py -> build/bdist.linux-armv7l/wheel/./yeastvision/models 2025-09-14T03:55:22,260 copying build/lib/yeastvision/models/model.py -> build/bdist.linux-armv7l/wheel/./yeastvision/models 2025-09-14T03:55:22,260 copying build/lib/yeastvision/models/utils.py -> build/bdist.linux-armv7l/wheel/./yeastvision/models 2025-09-14T03:55:22,261 creating build/bdist.linux-armv7l/wheel/yeastvision/track 2025-09-14T03:55:22,262 copying build/lib/yeastvision/track/__init__.py -> build/bdist.linux-armv7l/wheel/./yeastvision/track 2025-09-14T03:55:22,262 copying build/lib/yeastvision/track/cell.py -> build/bdist.linux-armv7l/wheel/./yeastvision/track 2025-09-14T03:55:22,263 copying build/lib/yeastvision/track/data.py -> build/bdist.linux-armv7l/wheel/./yeastvision/track 2025-09-14T03:55:22,263 copying build/lib/yeastvision/track/hungarian_track.py -> build/bdist.linux-armv7l/wheel/./yeastvision/track 2025-09-14T03:55:22,264 copying build/lib/yeastvision/track/lineage.py -> build/bdist.linux-armv7l/wheel/./yeastvision/track 2025-09-14T03:55:22,264 copying build/lib/yeastvision/track/mat.py -> build/bdist.linux-armv7l/wheel/./yeastvision/track 2025-09-14T03:55:22,265 copying build/lib/yeastvision/track/track.py -> build/bdist.linux-armv7l/wheel/./yeastvision/track 2025-09-14T03:55:22,266 copying build/lib/yeastvision/track/utils.py -> build/bdist.linux-armv7l/wheel/./yeastvision/track 2025-09-14T03:55:22,266 creating build/bdist.linux-armv7l/wheel/yeastvision/plot 2025-09-14T03:55:22,267 copying build/lib/yeastvision/plot/__init__.py -> build/bdist.linux-armv7l/wheel/./yeastvision/plot 2025-09-14T03:55:22,267 copying build/lib/yeastvision/plot/cell_table.py -> build/bdist.linux-armv7l/wheel/./yeastvision/plot 2025-09-14T03:55:22,268 copying build/lib/yeastvision/plot/plot.py -> build/bdist.linux-armv7l/wheel/./yeastvision/plot 2025-09-14T03:55:22,269 copying build/lib/yeastvision/plot/types.py -> build/bdist.linux-armv7l/wheel/./yeastvision/plot 2025-09-14T03:55:22,269 copying build/lib/yeastvision/plot/utils.py -> build/bdist.linux-armv7l/wheel/./yeastvision/plot 2025-09-14T03:55:22,270 creating build/bdist.linux-armv7l/wheel/yeastvision/data 2025-09-14T03:55:22,270 copying build/lib/yeastvision/data/__init__.py -> build/bdist.linux-armv7l/wheel/./yeastvision/data 2025-09-14T03:55:22,271 copying build/lib/yeastvision/data/ims.py -> build/bdist.linux-armv7l/wheel/./yeastvision/data 2025-09-14T03:55:22,272 copying build/lib/yeastvision/data/utils.py -> build/bdist.linux-armv7l/wheel/./yeastvision/data 2025-09-14T03:55:22,272 copying build/lib/yeastvision/__init__.py -> build/bdist.linux-armv7l/wheel/./yeastvision 2025-09-14T03:55:22,273 copying build/lib/yeastvision/__main__.py -> build/bdist.linux-armv7l/wheel/./yeastvision 2025-09-14T03:55:22,274 copying build/lib/yeastvision/install_weights.py -> build/bdist.linux-armv7l/wheel/./yeastvision 2025-09-14T03:55:22,274 copying build/lib/yeastvision/utils.py -> build/bdist.linux-armv7l/wheel/./yeastvision 2025-09-14T03:55:22,275 running install_data 2025-09-14T03:55:22,342 creating build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data 2025-09-14T03:55:22,343 creating build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:22,343 copying sample_movie/label_0.npz -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:22,885 copying sample_movie/img_000000179_Ph3_000_cp_masks.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:22,907 copying sample_movie/img_000000179_Ph3_000.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:22,928 copying sample_movie/img_000000178_Ph3_000_cp_masks.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:22,949 copying sample_movie/img_000000178_Ph3_000.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:22,970 copying sample_movie/img_000000177_Ph3_000_cp_masks.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:22,991 copying sample_movie/img_000000177_Ph3_000.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:23,012 copying sample_movie/img_000000176_Ph3_000_cp_masks.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:23,033 copying sample_movie/img_000000176_Ph3_000.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:23,054 copying sample_movie/img_000000175_Ph3_000_cp_masks.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:23,075 copying sample_movie/img_000000175_Ph3_000.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:23,096 copying sample_movie/img_000000174_Ph3_000_cp_masks.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:23,117 copying sample_movie/img_000000174_Ph3_000.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:23,138 copying sample_movie/img_000000173_Ph3_000_cp_masks.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:23,159 copying sample_movie/img_000000173_Ph3_000.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:23,180 copying sample_movie/img_000000172_Ph3_000_cp_masks.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:23,201 copying sample_movie/img_000000172_Ph3_000.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:23,222 copying sample_movie/img_000000171_Ph3_000_cp_masks.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:23,244 copying sample_movie/img_000000171_Ph3_000.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:23,265 copying sample_movie/img_000000170_Ph3_000_cp_masks.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:23,286 copying sample_movie/img_000000170_Ph3_000.tif -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:23,307 copying sample_movie/.DS_Store -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/sample_movie 2025-09-14T03:55:23,308 creating build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/yeastvision/models/budSeg 2025-09-14T03:55:23,309 copying yeastvision/models/budSeg/budSeg -> build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/yeastvision/models/budSeg 2025-09-14T03:55:23,328 error: could not write to 'build/bdist.linux-armv7l/wheel/yeastvision-0.1.33.data/data/yeastvision/models/budSeg/budSeg': No space left on device 2025-09-14T03:55:23,445 ERROR: python setup.py bdist_wheel exited with 1 2025-09-14T03:55:23,456 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-14T03:55:23,456 exec(compile('"'"''"'"''"'"' 2025-09-14T03:55:23,456 # This is -- a caller that pip uses to run setup.py 2025-09-14T03:55:23,456 # 2025-09-14T03:55:23,456 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-14T03:55:23,456 # import from `distutils.core` to work with newer packaging standards. 2025-09-14T03:55:23,456 # - It provides a clear error message when setuptools is not installed. 2025-09-14T03:55:23,456 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-14T03:55:23,456 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-14T03:55:23,456 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-14T03:55:23,456 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-14T03:55:23,456 import os, sys, tokenize, traceback 2025-09-14T03:55:23,456 2025-09-14T03:55:23,456 try: 2025-09-14T03:55:23,456 import setuptools 2025-09-14T03:55:23,456 except ImportError: 2025-09-14T03:55:23,456 print( 2025-09-14T03:55:23,456 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-14T03:55:23,456 "the build environment with exception:", 2025-09-14T03:55:23,456 file=sys.stderr, 2025-09-14T03:55:23,456 ) 2025-09-14T03:55:23,456 traceback.print_exc() 2025-09-14T03:55:23,456 sys.exit(1) 2025-09-14T03:55:23,456 2025-09-14T03:55:23,456 __file__ = %r 2025-09-14T03:55:23,456 sys.argv[0] = __file__ 2025-09-14T03:55:23,456 2025-09-14T03:55:23,456 if os.path.exists(__file__): 2025-09-14T03:55:23,456 filename = __file__ 2025-09-14T03:55:23,456 with tokenize.open(__file__) as f: 2025-09-14T03:55:23,456 setup_py_code = f.read() 2025-09-14T03:55:23,456 else: 2025-09-14T03:55:23,456 filename = "" 2025-09-14T03:55:23,456 setup_py_code = "from setuptools import setup; setup()" 2025-09-14T03:55:23,456 2025-09-14T03:55:23,456 exec(compile(setup_py_code, filename, "exec")) 2025-09-14T03:55:23,456 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-560fi910/yeastvision_21904c15ad984de9a0d1d7c48b0421d7/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-9kks6d4g[/] 2025-09-14T03:55:23,470 [bold magenta]cwd[/]: /tmp/pip-wheel-560fi910/yeastvision_21904c15ad984de9a0d1d7c48b0421d7/ 2025-09-14T03:55:23,473 Building wheel for yeastvision (setup.py): finished with status 'error' 2025-09-14T03:55:23,478 ERROR: Failed building wheel for yeastvision 2025-09-14T03:55:23,482 Running setup.py clean for yeastvision 2025-09-14T03:55:23,485 Running command python setup.py clean 2025-09-14T03:55:23,982 label_0.npz 2025-09-14T03:55:23,984 img_000000179_Ph3_000_cp_masks.tif 2025-09-14T03:55:23,987 img_000000179_Ph3_000.tif 2025-09-14T03:55:23,989 img_000000178_Ph3_000_cp_masks.tif 2025-09-14T03:55:23,991 img_000000178_Ph3_000.tif 2025-09-14T03:55:23,993 img_000000177_Ph3_000_cp_masks.tif 2025-09-14T03:55:23,996 img_000000177_Ph3_000.tif 2025-09-14T03:55:23,998 img_000000176_Ph3_000_cp_masks.tif 2025-09-14T03:55:24,000 img_000000176_Ph3_000.tif 2025-09-14T03:55:24,002 img_000000175_Ph3_000_cp_masks.tif 2025-09-14T03:55:24,004 img_000000175_Ph3_000.tif 2025-09-14T03:55:24,007 img_000000174_Ph3_000_cp_masks.tif 2025-09-14T03:55:24,009 img_000000174_Ph3_000.tif 2025-09-14T03:55:24,011 img_000000173_Ph3_000_cp_masks.tif 2025-09-14T03:55:24,013 img_000000173_Ph3_000.tif 2025-09-14T03:55:24,015 img_000000172_Ph3_000_cp_masks.tif 2025-09-14T03:55:24,018 img_000000172_Ph3_000.tif 2025-09-14T03:55:24,020 img_000000171_Ph3_000_cp_masks.tif 2025-09-14T03:55:24,022 img_000000171_Ph3_000.tif 2025-09-14T03:55:24,024 img_000000170_Ph3_000_cp_masks.tif 2025-09-14T03:55:24,026 img_000000170_Ph3_000.tif 2025-09-14T03:55:24,513 removing 'build/bdist.linux-armv7l' (and everything under it) 2025-09-14T03:55:24,612 'build/scripts-3.13' does not exist -- can't clean it 2025-09-14T03:55:24,613 removing 'build' 2025-09-14T03:55:24,707 Failed to build yeastvision 2025-09-14T03:55:24,708 ERROR: Failed to build one or more wheels 2025-09-14T03:55:24,709 Exception information: 2025-09-14T03:55:24,709 Traceback (most recent call last): 2025-09-14T03:55:24,709 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-14T03:55:24,709 status = _inner_run() 2025-09-14T03:55:24,709 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-14T03:55:24,709 return self.run(options, args) 2025-09-14T03:55:24,709 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-14T03:55:24,709 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-14T03:55:24,709 return func(self, options, args) 2025-09-14T03:55:24,709 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-14T03:55:24,709 raise CommandError("Failed to build one or more wheels") 2025-09-14T03:55:24,709 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-14T03:55:24,711 Removed build tracker: '/tmp/pip-build-tracker-mokrnd4z'