2025-09-14T06:34:30,041 Created temporary directory: /tmp/pip-build-tracker-8_chzgty 2025-09-14T06:34:30,042 Initialized build tracking at /tmp/pip-build-tracker-8_chzgty 2025-09-14T06:34:30,042 Created build tracker: /tmp/pip-build-tracker-8_chzgty 2025-09-14T06:34:30,043 Entered build tracker: /tmp/pip-build-tracker-8_chzgty 2025-09-14T06:34:30,043 Created temporary directory: /tmp/pip-wheel-d39_ywvn 2025-09-14T06:34:30,047 Created temporary directory: /tmp/pip-ephem-wheel-cache-_kmjz6aq 2025-09-14T06:34:30,113 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-14T06:34:30,116 2 location(s) to search for versions of scipion-em-emready: 2025-09-14T06:34:30,116 * https://pypi.org/simple/scipion-em-emready/ 2025-09-14T06:34:30,116 * https://www.piwheels.org/simple/scipion-em-emready/ 2025-09-14T06:34:30,116 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-emready/ 2025-09-14T06:34:30,117 Getting page https://pypi.org/simple/scipion-em-emready/ 2025-09-14T06:34:30,118 Found index url https://pypi.org/simple/ 2025-09-14T06:34:30,275 Fetched page https://pypi.org/simple/scipion-em-emready/ as application/vnd.pypi.simple.v1+json 2025-09-14T06:34:30,277 Found link https://files.pythonhosted.org/packages/d2/83/2eacc5ffdf9fc5fbe1e83e94e75081f9231691dcbf24cf3a6c7c34c6b08d/scipion-em-emready-3.0.tar.gz (from https://pypi.org/simple/scipion-em-emready/), version: 3.0 2025-09-14T06:34:30,278 Skipping link: No binaries permitted for scipion-em-emready: https://files.pythonhosted.org/packages/03/32/01b8486c59c7791bc7b48fdb3f63329b6dd52aef516746ddf6fbbc9e61e6/scipion_em_emready-3.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emready/) 2025-09-14T06:34:30,278 Found link https://files.pythonhosted.org/packages/4c/e0/a5db497a711fc5b701f7573260746d4ba5181116d2ce478bb2871e2ff190/scipion-em-emready-3.0.1.tar.gz (from https://pypi.org/simple/scipion-em-emready/), version: 3.0.1 2025-09-14T06:34:30,279 Skipping link: No binaries permitted for scipion-em-emready: https://files.pythonhosted.org/packages/c7/5a/087bee033713ed875b73ce7deb998de93049845cddccce3ea1b9e2acd7b8/scipion_em_emready-3.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emready/) 2025-09-14T06:34:30,279 Found link https://files.pythonhosted.org/packages/5c/a7/c40a9b806fde439652319b8eb3f29b42c753eb8d6b2ed64e0b16d970527b/scipion-em-emready-3.1.0.tar.gz (from https://pypi.org/simple/scipion-em-emready/), version: 3.1.0 2025-09-14T06:34:30,279 Skipping link: No binaries permitted for scipion-em-emready: https://files.pythonhosted.org/packages/37/3a/288b9ebdf79a88dfab418b25b8ce5f8a7672925405c726b5d94e94acf462/scipion_em_emready-3.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emready/) 2025-09-14T06:34:30,279 Found link https://files.pythonhosted.org/packages/02/88/e22ada33e86dffeab6ef4c40670c43dfef389554642c7c79edb2d050d371/scipion-em-emready-3.1.1.tar.gz (from https://pypi.org/simple/scipion-em-emready/), version: 3.1.1 2025-09-14T06:34:30,280 Skipping link: No binaries permitted for scipion-em-emready: https://files.pythonhosted.org/packages/77/34/fea47db4926ac636752c2623b317c3fe0c2aef8adc2eeebb1fe1685dd1ad/scipion_em_emready-3.1.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emready/) 2025-09-14T06:34:30,280 Skipping link: No binaries permitted for scipion-em-emready: https://files.pythonhosted.org/packages/5c/0d/cdb21215384423f3dd3531d2690df7b5317b838cb8dfcb6dda2a73f64ea9/scipion_em_emready-3.1.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emready/) (requires-python:>=3.8) 2025-09-14T06:34:30,281 Found link https://files.pythonhosted.org/packages/1b/e1/9a7ebe0de68a802e5f0955faf5d7996a7287ed54db982f5d6c6afdd39fd3/scipion_em_emready-3.1.2.tar.gz (from https://pypi.org/simple/scipion-em-emready/) (requires-python:>=3.8), version: 3.1.2 2025-09-14T06:34:30,282 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-emready/ 2025-09-14T06:34:30,282 Getting page https://www.piwheels.org/simple/scipion-em-emready/ 2025-09-14T06:34:30,283 Found index url https://www.piwheels.org/simple/ 2025-09-14T06:34:30,392 Fetched page https://www.piwheels.org/simple/scipion-em-emready/ as text/html 2025-09-14T06:34:30,393 Skipping link: No binaries permitted for scipion-em-emready: https://archive1.piwheels.org/simple/scipion-em-emready/scipion_em_emready-3.1.2-py3-none-any.whl#sha256=b5cdcd8f0645a8d22f8e4a068524afd5157361193928a2ddcf560a40d273d171 (from https://www.piwheels.org/simple/scipion-em-emready/) (requires-python:>=3.8) 2025-09-14T06:34:30,393 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-emready/ 2025-09-14T06:34:30,393 Skipping link: not a file: https://pypi.org/simple/scipion-em-emready/ 2025-09-14T06:34:30,422 Given no hashes to check 1 links for project 'scipion-em-emready': discarding no candidates 2025-09-14T06:34:30,423 Collecting scipion-em-emready==3.0.1 2025-09-14T06:34:30,426 Created temporary directory: /tmp/pip-unpack-hxpb9buq 2025-09-14T06:34:30,668 Downloading scipion-em-emready-3.0.1.tar.gz (21 kB) 2025-09-14T06:34:30,706 Added scipion-em-emready==3.0.1 from https://files.pythonhosted.org/packages/4c/e0/a5db497a711fc5b701f7573260746d4ba5181116d2ce478bb2871e2ff190/scipion-em-emready-3.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-8_chzgty' 2025-09-14T06:34:30,707 Running setup.py (path:/tmp/pip-wheel-d39_ywvn/scipion-em-emready_3ea87a94ab214c649945f2d700975671/setup.py) egg_info for package scipion-em-emready 2025-09-14T06:34:30,708 Created temporary directory: /tmp/pip-pip-egg-info-5ym3lpv8 2025-09-14T06:34:30,708 Preparing metadata (setup.py): started 2025-09-14T06:34:30,709 Running command python setup.py egg_info 2025-09-14T06:34:31,263 Traceback (most recent call last): 2025-09-14T06:34:31,265 File "", line 2, in 2025-09-14T06:34:31,265 exec(compile(''' 2025-09-14T06:34:31,265 ~~~~^^^^^^^^^^^^ 2025-09-14T06:34:31,266 # This is -- a caller that pip uses to run setup.py 2025-09-14T06:34:31,266 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-14T06:34:31,266 ...<32 lines>... 2025-09-14T06:34:31,266 exec(compile(setup_py_code, filename, "exec")) 2025-09-14T06:34:31,267 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-14T06:34:31,267 ''' % ('/tmp/pip-wheel-d39_ywvn/scipion-em-emready_3ea87a94ab214c649945f2d700975671/setup.py',), "", "exec")) 2025-09-14T06:34:31,267 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-14T06:34:31,267 File "", line 35, in 2025-09-14T06:34:31,268 File "/tmp/pip-wheel-d39_ywvn/scipion-em-emready_3ea87a94ab214c649945f2d700975671/setup.py", line 43, in 2025-09-14T06:34:31,268 from emready import __version__ 2025-09-14T06:34:31,268 File "/tmp/pip-wheel-d39_ywvn/scipion-em-emready_3ea87a94ab214c649945f2d700975671/emready/__init__.py", line 28, in 2025-09-14T06:34:31,268 import pwem 2025-09-14T06:34:31,269 ModuleNotFoundError: No module named 'pwem' 2025-09-14T06:34:31,364 ERROR: python setup.py egg_info exited with 1 2025-09-14T06:34:31,378 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2025-09-14T06:34:31,378 exec(compile('"'"''"'"''"'"' 2025-09-14T06:34:31,378 # This is -- a caller that pip uses to run setup.py 2025-09-14T06:34:31,378 # 2025-09-14T06:34:31,378 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-14T06:34:31,378 # import from `distutils.core` to work with newer packaging standards. 2025-09-14T06:34:31,378 # - It provides a clear error message when setuptools is not installed. 2025-09-14T06:34:31,378 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-14T06:34:31,378 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-14T06:34:31,378 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-14T06:34:31,378 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-14T06:34:31,378 import os, sys, tokenize, traceback 2025-09-14T06:34:31,378 2025-09-14T06:34:31,378 try: 2025-09-14T06:34:31,378 import setuptools 2025-09-14T06:34:31,378 except ImportError: 2025-09-14T06:34:31,378 print( 2025-09-14T06:34:31,378 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-14T06:34:31,378 "the build environment with exception:", 2025-09-14T06:34:31,378 file=sys.stderr, 2025-09-14T06:34:31,378 ) 2025-09-14T06:34:31,378 traceback.print_exc() 2025-09-14T06:34:31,378 sys.exit(1) 2025-09-14T06:34:31,378 2025-09-14T06:34:31,378 __file__ = %r 2025-09-14T06:34:31,378 sys.argv[0] = __file__ 2025-09-14T06:34:31,378 2025-09-14T06:34:31,378 if os.path.exists(__file__): 2025-09-14T06:34:31,378 filename = __file__ 2025-09-14T06:34:31,378 with tokenize.open(__file__) as f: 2025-09-14T06:34:31,378 setup_py_code = f.read() 2025-09-14T06:34:31,378 else: 2025-09-14T06:34:31,378 filename = "" 2025-09-14T06:34:31,378 setup_py_code = "from setuptools import setup; setup()" 2025-09-14T06:34:31,378 2025-09-14T06:34:31,378 exec(compile(setup_py_code, filename, "exec")) 2025-09-14T06:34:31,378 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-d39_ywvn/scipion-em-emready_3ea87a94ab214c649945f2d700975671/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-5ym3lpv8[/] 2025-09-14T06:34:31,378 [bold magenta]cwd[/]: /tmp/pip-wheel-d39_ywvn/scipion-em-emready_3ea87a94ab214c649945f2d700975671/ 2025-09-14T06:34:31,379 Preparing metadata (setup.py): finished with status 'error' 2025-09-14T06:34:31,380 ERROR: metadata generation failed 2025-09-14T06:34:31,387 Exception information: 2025-09-14T06:34:31,387 Traceback (most recent call last): 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 63, in generate_metadata 2025-09-14T06:34:31,387 call_subprocess( 2025-09-14T06:34:31,387 ~~~~~~~~~~~~~~~^ 2025-09-14T06:34:31,387 args, 2025-09-14T06:34:31,387 ^^^^^ 2025-09-14T06:34:31,387 ...<2 lines>... 2025-09-14T06:34:31,387 spinner=spinner, 2025-09-14T06:34:31,387 ^^^^^^^^^^^^^^^^ 2025-09-14T06:34:31,387 ) 2025-09-14T06:34:31,387 ^ 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2025-09-14T06:34:31,387 raise error 2025-09-14T06:34:31,387 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2025-09-14T06:34:31,387 2025-09-14T06:34:31,387 The above exception was the direct cause of the following exception: 2025-09-14T06:34:31,387 2025-09-14T06:34:31,387 Traceback (most recent call last): 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-14T06:34:31,387 status = _inner_run() 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-14T06:34:31,387 return self.run(options, args) 2025-09-14T06:34:31,387 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-14T06:34:31,387 return func(self, options, args) 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2025-09-14T06:34:31,387 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 96, in resolve 2025-09-14T06:34:31,387 result = self._result = resolver.resolve( 2025-09-14T06:34:31,387 ~~~~~~~~~~~~~~~~^ 2025-09-14T06:34:31,387 collected.requirements, max_rounds=limit_how_complex_resolution_can_be 2025-09-14T06:34:31,387 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-14T06:34:31,387 ) 2025-09-14T06:34:31,387 ^ 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 515, in resolve 2025-09-14T06:34:31,387 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 388, in resolve 2025-09-14T06:34:31,387 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-09-14T06:34:31,387 ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 141, in _add_to_criteria 2025-09-14T06:34:31,387 if not criterion.candidates: 2025-09-14T06:34:31,387 ^^^^^^^^^^^^^^^^^^^^ 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-09-14T06:34:31,387 return bool(self._sequence) 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 163, in __bool__ 2025-09-14T06:34:31,387 self._bool = any(self) 2025-09-14T06:34:31,387 ~~~^^^^^^ 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 147, in 2025-09-14T06:34:31,387 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-09-14T06:34:31,387 ^^^^^^^^ 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 37, in _iter_built 2025-09-14T06:34:31,387 candidate = func() 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link 2025-09-14T06:34:31,387 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2025-09-14T06:34:31,387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-14T06:34:31,387 link, template, name, version 2025-09-14T06:34:31,387 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-14T06:34:31,387 ) 2025-09-14T06:34:31,387 ^ 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link 2025-09-14T06:34:31,387 self._link_candidate_cache[link] = LinkCandidate( 2025-09-14T06:34:31,387 ~~~~~~~~~~~~~^ 2025-09-14T06:34:31,387 link, 2025-09-14T06:34:31,387 ^^^^^ 2025-09-14T06:34:31,387 ...<3 lines>... 2025-09-14T06:34:31,387 version=version, 2025-09-14T06:34:31,387 ^^^^^^^^^^^^^^^^ 2025-09-14T06:34:31,387 ) 2025-09-14T06:34:31,387 ^ 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 306, in __init__ 2025-09-14T06:34:31,387 super().__init__( 2025-09-14T06:34:31,387 ~~~~~~~~~~~~~~~~^ 2025-09-14T06:34:31,387 link=link, 2025-09-14T06:34:31,387 ^^^^^^^^^^ 2025-09-14T06:34:31,387 ...<4 lines>... 2025-09-14T06:34:31,387 version=version, 2025-09-14T06:34:31,387 ^^^^^^^^^^^^^^^^ 2025-09-14T06:34:31,387 ) 2025-09-14T06:34:31,387 ^ 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__ 2025-09-14T06:34:31,387 self.dist = self._prepare() 2025-09-14T06:34:31,387 ~~~~~~~~~~~~~^^ 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare 2025-09-14T06:34:31,387 dist = self._prepare_distribution() 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 317, in _prepare_distribution 2025-09-14T06:34:31,387 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2025-09-14T06:34:31,387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 532, in prepare_linked_requirement 2025-09-14T06:34:31,387 return self._prepare_linked_requirement(req, parallel_builds) 2025-09-14T06:34:31,387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 647, in _prepare_linked_requirement 2025-09-14T06:34:31,387 dist = _get_prepared_distribution( 2025-09-14T06:34:31,387 req, 2025-09-14T06:34:31,387 ...<3 lines>... 2025-09-14T06:34:31,387 self.check_build_deps, 2025-09-14T06:34:31,387 ) 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution 2025-09-14T06:34:31,387 abstract_dist.prepare_distribution_metadata( 2025-09-14T06:34:31,387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-14T06:34:31,387 finder, build_isolation, check_build_deps 2025-09-14T06:34:31,387 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-14T06:34:31,387 ) 2025-09-14T06:34:31,387 ^ 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2025-09-14T06:34:31,387 self.req.prepare_metadata() 2025-09-14T06:34:31,387 ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2025-09-14T06:34:31,387 self.metadata_directory = generate_metadata_legacy( 2025-09-14T06:34:31,387 ~~~~~~~~~~~~~~~~~~~~~~~~^ 2025-09-14T06:34:31,387 build_env=self.build_env, 2025-09-14T06:34:31,387 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-09-14T06:34:31,387 ...<3 lines>... 2025-09-14T06:34:31,387 details=details, 2025-09-14T06:34:31,387 ^^^^^^^^^^^^^^^^ 2025-09-14T06:34:31,387 ) 2025-09-14T06:34:31,387 ^ 2025-09-14T06:34:31,387 File "/usr/lib/python3/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 70, in generate_metadata 2025-09-14T06:34:31,387 raise MetadataGenerationFailed(package_details=details) from error 2025-09-14T06:34:31,387 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2025-09-14T06:34:31,413 Removed scipion-em-emready==3.0.1 from https://files.pythonhosted.org/packages/4c/e0/a5db497a711fc5b701f7573260746d4ba5181116d2ce478bb2871e2ff190/scipion-em-emready-3.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-8_chzgty' 2025-09-14T06:34:31,414 Removed build tracker: '/tmp/pip-build-tracker-8_chzgty'