2025-09-14T09:30:50,533 Created temporary directory: /tmp/pip-build-tracker-hzs6lkbr 2025-09-14T09:30:50,534 Initialized build tracking at /tmp/pip-build-tracker-hzs6lkbr 2025-09-14T09:30:50,534 Created build tracker: /tmp/pip-build-tracker-hzs6lkbr 2025-09-14T09:30:50,535 Entered build tracker: /tmp/pip-build-tracker-hzs6lkbr 2025-09-14T09:30:50,535 Created temporary directory: /tmp/pip-wheel-a5bcw3n6 2025-09-14T09:30:50,539 Created temporary directory: /tmp/pip-ephem-wheel-cache-uf42l45h 2025-09-14T09:30:50,602 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-14T09:30:50,605 2 location(s) to search for versions of kssdtree: 2025-09-14T09:30:50,605 * https://pypi.org/simple/kssdtree/ 2025-09-14T09:30:50,605 * https://www.piwheels.org/simple/kssdtree/ 2025-09-14T09:30:50,605 Fetching project page and analyzing links: https://pypi.org/simple/kssdtree/ 2025-09-14T09:30:50,606 Getting page https://pypi.org/simple/kssdtree/ 2025-09-14T09:30:50,607 Found index url https://pypi.org/simple/ 2025-09-14T09:30:50,685 Fetched page https://pypi.org/simple/kssdtree/ as application/vnd.pypi.simple.v1+json 2025-09-14T09:30:50,687 Found link https://files.pythonhosted.org/packages/d5/1e/9e5c5945a44bb40002d1c259f734a531999fa6e87db89fe7c7ddcfc583cc/kssdtree-1.1.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.1 2025-09-14T09:30:50,688 Found link https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.2 2025-09-14T09:30:50,688 Found link https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.3 2025-09-14T09:30:50,688 Found link https://files.pythonhosted.org/packages/20/ea/b0301924e3f7d367cbb7b8da66837dba9af2a332bf56ed35e03a33faee76/kssdtree-1.1.4.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.4 2025-09-14T09:30:50,688 Found link https://files.pythonhosted.org/packages/41/65/ed35110b84bc0dd02b9add0104f10160754d2ea0882191767d512146a884/kssdtree-1.1.6.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.6 2025-09-14T09:30:50,689 Found link https://files.pythonhosted.org/packages/cd/4b/d886cbcc573ff0969da7d9c756049925b86141e60ee6708dfbbe0644d008/kssdtree-1.1.7.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.7 2025-09-14T09:30:50,689 Found link https://files.pythonhosted.org/packages/7e/8a/a62c8adc92df69ab8cb242827ee64a3e2b6d5c89b83425785dd00605af17/kssdtree-1.1.8.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.8 2025-09-14T09:30:50,689 Found link https://files.pythonhosted.org/packages/da/db/e458cca6427752c05428d2378ccdee631d32f760174fdaba65f73125e71b/kssdtree-1.1.9.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.9 2025-09-14T09:30:50,689 Found link https://files.pythonhosted.org/packages/9d/47/017180a30e73e421372377cbe6d01c5e51a5108ea2177f20ccd7d283f8d1/kssdtree-2.0.0.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.0 2025-09-14T09:30:50,690 Found link https://files.pythonhosted.org/packages/ba/39/d443cac955912a0371c93b797311cb9ec3a8d6ee0a5d7673376d826aa6b2/kssdtree-2.0.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.1 2025-09-14T09:30:50,690 Found link https://files.pythonhosted.org/packages/2e/32/e53c0e3735cbc913b2c96b4e0e1c1005fe816a4d71b38b80cdcfb5c67fa8/kssdtree-2.0.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.2 2025-09-14T09:30:50,690 Found link https://files.pythonhosted.org/packages/c0/0f/effc10c8e76dbe3b9a35a4b4d9e65a0a889ee805e10334541c3ca7ae3b94/kssdtree-2.0.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.3 2025-09-14T09:30:50,690 Found link https://files.pythonhosted.org/packages/fc/8d/d3790baa2f2f0a01c913005b94a82dc13ef601e7015e662ccff94bb1b458/kssdtree-2.0.4.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.4 2025-09-14T09:30:50,690 Found link https://files.pythonhosted.org/packages/b5/f8/19480a4c57704944f973ebf534f9582054949cca20170a33c6f874974440/kssdtree-2.0.5.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.5 2025-09-14T09:30:50,691 Found link https://files.pythonhosted.org/packages/46/ef/2d920d5d2fceded48c7add363e04f49ae85414bcd4360e1295d6fddc4a24/kssdtree-2.0.6.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.6 2025-09-14T09:30:50,691 Found link https://files.pythonhosted.org/packages/9c/1c/c6b3f05465d145856ac992328bd59e776286a59b120254620c1dbffcf67f/kssdtree-2.0.7.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.7 2025-09-14T09:30:50,691 Found link https://files.pythonhosted.org/packages/82/9b/dac2af6572f0c4421e5ba8341dcfddac466de30c62acfa019d9ef70b2670/kssdtree-2.0.8.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.8 2025-09-14T09:30:50,692 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdtree/ 2025-09-14T09:30:50,692 Getting page https://www.piwheels.org/simple/kssdtree/ 2025-09-14T09:30:50,693 Found index url https://www.piwheels.org/simple/ 2025-09-14T09:30:50,787 Fetched page https://www.piwheels.org/simple/kssdtree/ as text/html 2025-09-14T09:30:50,799 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv6l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,799 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv7l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,800 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv6l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,800 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv7l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,800 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp311-cp311-linux_armv6l.whl#sha256=e1e02281e0fc8ed3b80b596a811ca2a9b50cb7affb3649479228d59c074c1f94 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,800 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp311-cp311-linux_armv7l.whl#sha256=e1e02281e0fc8ed3b80b596a811ca2a9b50cb7affb3649479228d59c074c1f94 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,800 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp311-cp311-linux_armv6l.whl#sha256=cecf3000ed0ffcd720412023d8de2f213356363c01aa3193441c040ed34353d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,800 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp311-cp311-linux_armv7l.whl#sha256=cecf3000ed0ffcd720412023d8de2f213356363c01aa3193441c040ed34353d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,800 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp39-cp39-linux_armv6l.whl#sha256=db08595adc89347b61965ba36e918055e8a0dc5f6a2b0bdfe16133eb363412d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,801 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp39-cp39-linux_armv7l.whl#sha256=db08595adc89347b61965ba36e918055e8a0dc5f6a2b0bdfe16133eb363412d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,801 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp39-cp39-linux_armv6l.whl#sha256=f629766f3426bb8a83c6f4adca8b02b03cb85452c129c9694cef65efd715fabd (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,802 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp39-cp39-linux_armv7l.whl#sha256=f629766f3426bb8a83c6f4adca8b02b03cb85452c129c9694cef65efd715fabd (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,802 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp311-cp311-linux_armv6l.whl#sha256=ae7417e30efd12d8c6800d4167141c94a93f1ce51afd5ae9196cdfb6057ca7d2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,802 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp311-cp311-linux_armv7l.whl#sha256=ae7417e30efd12d8c6800d4167141c94a93f1ce51afd5ae9196cdfb6057ca7d2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,802 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv6l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,802 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv7l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,803 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.1-cp311-cp311-linux_armv6l.whl#sha256=8b8c3190a5a4a010758772e9d53c3c12436541437bc9c503bec9a8f6a007cdcc (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,803 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.1-cp311-cp311-linux_armv7l.whl#sha256=8b8c3190a5a4a010758772e9d53c3c12436541437bc9c503bec9a8f6a007cdcc (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,803 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.0-cp311-cp311-linux_armv6l.whl#sha256=16a2e46376ed2874435371fd57a97405d4b631b35c014b9e395a4528a1e655b8 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,803 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv6l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,804 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv7l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,805 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp311-cp311-linux_armv6l.whl#sha256=388a8dabd657ea83e6d22b52300337c74e9d84e506806cfd4d2a76eb98777e17 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,805 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv6l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,805 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv7l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,805 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv6l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,806 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv7l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,806 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv6l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,806 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv7l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,806 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,806 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,806 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,806 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,807 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,807 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,807 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv6l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,807 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv7l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,807 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,807 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,807 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,808 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,808 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,808 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,808 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,808 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,808 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv6l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,808 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv7l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,809 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,809 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,809 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,809 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T09:30:50,809 Skipping link: not a file: https://www.piwheels.org/simple/kssdtree/ 2025-09-14T09:30:50,809 Skipping link: not a file: https://pypi.org/simple/kssdtree/ 2025-09-14T09:30:50,835 Given no hashes to check 1 links for project 'kssdtree': discarding no candidates 2025-09-14T09:30:50,836 Collecting kssdtree==1.1.9 2025-09-14T09:30:50,837 Created temporary directory: /tmp/pip-unpack-98fpt24c 2025-09-14T09:30:51,208 Downloading kssdtree-1.1.9.tar.gz (112 kB) 2025-09-14T09:30:51,306 Added kssdtree==1.1.9 from https://files.pythonhosted.org/packages/da/db/e458cca6427752c05428d2378ccdee631d32f760174fdaba65f73125e71b/kssdtree-1.1.9.tar.gz to build tracker '/tmp/pip-build-tracker-hzs6lkbr' 2025-09-14T09:30:51,308 Running setup.py (path:/tmp/pip-wheel-a5bcw3n6/kssdtree_68c920252cae42ba8e3f4e541accf753/setup.py) egg_info for package kssdtree 2025-09-14T09:30:51,309 Created temporary directory: /tmp/pip-pip-egg-info-puw76kx4 2025-09-14T09:30:51,309 Preparing metadata (setup.py): started 2025-09-14T09:30:51,310 Running command python setup.py egg_info 2025-09-14T09:30:52,616 running egg_info 2025-09-14T09:30:52,705 creating /tmp/pip-pip-egg-info-puw76kx4/kssdtree.egg-info 2025-09-14T09:30:52,705 writing /tmp/pip-pip-egg-info-puw76kx4/kssdtree.egg-info/PKG-INFO 2025-09-14T09:30:52,706 writing dependency_links to /tmp/pip-pip-egg-info-puw76kx4/kssdtree.egg-info/dependency_links.txt 2025-09-14T09:30:52,707 writing requirements to /tmp/pip-pip-egg-info-puw76kx4/kssdtree.egg-info/requires.txt 2025-09-14T09:30:52,707 writing top-level names to /tmp/pip-pip-egg-info-puw76kx4/kssdtree.egg-info/top_level.txt 2025-09-14T09:30:52,708 writing manifest file '/tmp/pip-pip-egg-info-puw76kx4/kssdtree.egg-info/SOURCES.txt' 2025-09-14T09:30:53,058 reading manifest file '/tmp/pip-pip-egg-info-puw76kx4/kssdtree.egg-info/SOURCES.txt' 2025-09-14T09:30:53,059 reading manifest template 'MANIFEST.in' 2025-09-14T09:30:53,067 writing manifest file '/tmp/pip-pip-egg-info-puw76kx4/kssdtree.egg-info/SOURCES.txt' 2025-09-14T09:30:53,197 Preparing metadata (setup.py): finished with status 'done' 2025-09-14T09:30:53,202 Source in /tmp/pip-wheel-a5bcw3n6/kssdtree_68c920252cae42ba8e3f4e541accf753 has version 1.1.9, which satisfies requirement kssdtree==1.1.9 from https://files.pythonhosted.org/packages/da/db/e458cca6427752c05428d2378ccdee631d32f760174fdaba65f73125e71b/kssdtree-1.1.9.tar.gz 2025-09-14T09:30:53,203 Removed kssdtree==1.1.9 from https://files.pythonhosted.org/packages/da/db/e458cca6427752c05428d2378ccdee631d32f760174fdaba65f73125e71b/kssdtree-1.1.9.tar.gz from build tracker '/tmp/pip-build-tracker-hzs6lkbr' 2025-09-14T09:30:53,206 Created temporary directory: /tmp/pip-unpack-oogc7yl9 2025-09-14T09:30:53,207 Created temporary directory: /tmp/pip-unpack-gyqe9wyh 2025-09-14T09:30:53,207 Building wheels for collected packages: kssdtree 2025-09-14T09:30:53,208 Created temporary directory: /tmp/pip-wheel-p8q54u0_ 2025-09-14T09:30:53,209 DEPRECATION: Building 'kssdtree' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'kssdtree'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-14T09:30:53,210 Building wheel for kssdtree (setup.py): started 2025-09-14T09:30:53,211 Destination directory: /tmp/pip-wheel-p8q54u0_ 2025-09-14T09:30:53,211 Running command python setup.py bdist_wheel 2025-09-14T09:30:54,389 running bdist_wheel 2025-09-14T09:30:54,821 running build 2025-09-14T09:30:54,822 running build_py 2025-09-14T09:30:54,911 creating build/lib.linux-armv7l-cpython-313 2025-09-14T09:30:54,912 copying kssdtree.py -> build/lib.linux-armv7l-cpython-313 2025-09-14T09:30:54,913 copying toolutils.py -> build/lib.linux-armv7l-cpython-313 2025-09-14T09:30:54,913 running egg_info 2025-09-14T09:30:55,004 writing kssdtree.egg-info/PKG-INFO 2025-09-14T09:30:55,005 writing dependency_links to kssdtree.egg-info/dependency_links.txt 2025-09-14T09:30:55,006 writing requirements to kssdtree.egg-info/requires.txt 2025-09-14T09:30:55,007 writing top-level names to kssdtree.egg-info/top_level.txt 2025-09-14T09:30:55,098 reading manifest file 'kssdtree.egg-info/SOURCES.txt' 2025-09-14T09:30:55,103 reading manifest template 'MANIFEST.in' 2025-09-14T09:30:55,111 writing manifest file 'kssdtree.egg-info/SOURCES.txt' 2025-09-14T09:30:55,112 running build_ext 2025-09-14T09:30:55,496 building 'kssd' extension 2025-09-14T09:30:55,498 creating build/temp.linux-armv7l-cpython-313 2025-09-14T09:30:55,499 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c co2mco.c -o build/temp.linux-armv7l-cpython-313/co2mco.o -fopenmp 2025-09-14T09:30:55,685 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2025-09-14T09:30:55,685 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-14T09:30:55,685 109 | for (unsigned int i = 0; i < comp_num; i++) { 2025-09-14T09:30:55,686 | ^ 2025-09-14T09:30:55,690 co2mco.c: In function ‘co2unitllmco’: 2025-09-14T09:30:55,690 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-14T09:30:55,690 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2025-09-14T09:30:55,691 | ^ 2025-09-14T09:30:56,462 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_composite.c -o build/temp.linux-armv7l-cpython-313/command_composite.o -fopenmp 2025-09-14T09:30:56,883 command_composite.c: In function ‘get_species_abundance’: 2025-09-14T09:30:56,883 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-14T09:30:56,883 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2025-09-14T09:30:56,883 | ^~ 2025-09-14T09:30:56,883 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-14T09:30:56,883 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2025-09-14T09:30:56,884 | ^~ 2025-09-14T09:30:56,884 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:30:56,884 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-14T09:30:56,884 | ^ 2025-09-14T09:30:56,884 command_composite.c:64:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:30:56,884 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-14T09:30:56,884 | ^~~~~~~~~~ 2025-09-14T09:30:56,884 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-14T09:30:56,885 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-14T09:30:56,885 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:30:56,885 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:30:56,885 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-14T09:30:56,885 | ^ 2025-09-14T09:30:56,885 command_composite.c:70:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:30:56,885 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-14T09:30:56,885 | ^~~~~~~~~~ 2025-09-14T09:30:56,885 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-14T09:30:56,886 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-14T09:30:56,886 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:30:56,886 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:30:56,886 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-14T09:30:56,886 | ^ 2025-09-14T09:30:56,886 command_composite.c:76:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:30:56,886 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-14T09:30:56,886 | ^~~~~~~~~~ 2025-09-14T09:30:56,886 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-14T09:30:56,887 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-14T09:30:56,887 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:30:56,887 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:30:56,887 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-14T09:30:56,887 | ^ 2025-09-14T09:30:56,887 command_composite.c:82:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:30:56,887 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-14T09:30:56,887 | ^~~~~~~~~~ 2025-09-14T09:30:56,888 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-14T09:30:56,888 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-14T09:30:56,888 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:30:56,888 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:30:56,888 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-14T09:30:56,888 | ^ 2025-09-14T09:30:56,888 command_composite.c:88:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:30:56,888 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-14T09:30:56,888 | ^~~~~~~~~~~~ 2025-09-14T09:30:56,889 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2025-09-14T09:30:56,889 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-14T09:30:56,889 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:30:57,163 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist.c -o build/temp.linux-armv7l-cpython-313/command_dist.o -fopenmp 2025-09-14T09:30:57,410 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-14T09:30:57,412 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T09:30:57,412 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-14T09:30:57,412 | ~~^ 2025-09-14T09:30:57,413 | | 2025-09-14T09:30:57,413 | long unsigned int 2025-09-14T09:30:57,413 | %u 2025-09-14T09:30:57,413 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-14T09:30:57,413 | ~~~~~~~ 2025-09-14T09:30:57,413 | | 2025-09-14T09:30:57,413 | size_t {aka unsigned int} 2025-09-14T09:30:57,415 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T09:30:57,416 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-14T09:30:57,416 | ~~^ 2025-09-14T09:30:57,416 | | 2025-09-14T09:30:57,416 | long unsigned int 2025-09-14T09:30:57,416 | %u 2025-09-14T09:30:57,416 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-14T09:30:57,416 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-14T09:30:57,416 | ~~~~~~~~~ 2025-09-14T09:30:57,417 | | 2025-09-14T09:30:57,417 | size_t {aka unsigned int} 2025-09-14T09:30:57,419 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-14T09:30:57,419 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-14T09:30:57,419 | ~~^ 2025-09-14T09:30:57,419 | | 2025-09-14T09:30:57,419 | long unsigned int 2025-09-14T09:30:57,419 | %u 2025-09-14T09:30:57,420 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-14T09:30:57,420 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-14T09:30:57,420 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:30:57,420 | | 2025-09-14T09:30:57,420 | unsigned int 2025-09-14T09:30:57,424 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-14T09:30:57,424 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2025-09-14T09:30:57,424 | ^ 2025-09-14T09:30:57,433 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-14T09:30:57,436 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T09:30:57,436 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-14T09:30:57,436 | ~~^ ~~~~~~~ 2025-09-14T09:30:57,436 | | | 2025-09-14T09:30:57,437 | long unsigned int size_t {aka unsigned int} 2025-09-14T09:30:57,437 | %u 2025-09-14T09:30:57,439 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T09:30:57,440 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-14T09:30:57,440 | ~~^ 2025-09-14T09:30:57,440 | | 2025-09-14T09:30:57,440 | long unsigned int 2025-09-14T09:30:57,440 | %u 2025-09-14T09:30:57,440 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-14T09:30:57,440 | ~~~~~~~~~ 2025-09-14T09:30:57,440 | | 2025-09-14T09:30:57,440 | size_t {aka unsigned int} 2025-09-14T09:30:57,443 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-14T09:30:57,443 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-14T09:30:57,444 | ~~^ 2025-09-14T09:30:57,444 | | 2025-09-14T09:30:57,444 | long unsigned int 2025-09-14T09:30:57,444 | %u 2025-09-14T09:30:57,444 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-14T09:30:57,444 865 | (size_t) b * unitsz_distf_mapped); 2025-09-14T09:30:57,444 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:30:57,444 | | 2025-09-14T09:30:57,444 | unsigned int 2025-09-14T09:30:57,448 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2025-09-14T09:30:57,448 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2025-09-14T09:30:57,448 | ^~~~~~~ 2025-09-14T09:30:57,449 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2025-09-14T09:30:57,449 809 | struct stat cbd_fcode_stat; 2025-09-14T09:30:57,450 | ^~~~~~~~~~~~~~ 2025-09-14T09:30:57,451 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2025-09-14T09:30:57,451 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-14T09:30:57,451 | ^~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:30:57,453 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2025-09-14T09:30:57,453 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-14T09:30:57,453 | ^~~~~~~~~~~~~~~~~ 2025-09-14T09:30:57,461 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-14T09:30:57,464 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T09:30:57,464 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-14T09:30:57,464 | ~~^ 2025-09-14T09:30:57,464 | | 2025-09-14T09:30:57,464 | long unsigned int 2025-09-14T09:30:57,465 | %u 2025-09-14T09:30:57,465 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-14T09:30:57,465 | ~~~~~~~ 2025-09-14T09:30:57,465 | | 2025-09-14T09:30:57,465 | size_t {aka unsigned int} 2025-09-14T09:30:57,468 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T09:30:57,468 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-14T09:30:57,468 | ~~^ 2025-09-14T09:30:57,468 | | 2025-09-14T09:30:57,469 | long unsigned int 2025-09-14T09:30:57,469 | %u 2025-09-14T09:30:57,469 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-14T09:30:57,469 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-14T09:30:57,469 | ~~~~~~~~~ 2025-09-14T09:30:57,469 | | 2025-09-14T09:30:57,469 | size_t {aka unsigned int} 2025-09-14T09:30:57,472 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-14T09:30:57,472 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-14T09:30:57,472 | ~~^ 2025-09-14T09:30:57,473 | | 2025-09-14T09:30:57,473 | long unsigned int 2025-09-14T09:30:57,473 | %u 2025-09-14T09:30:57,473 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-14T09:30:57,473 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-14T09:30:57,473 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:30:57,473 | | 2025-09-14T09:30:57,473 | unsigned int 2025-09-14T09:30:57,480 command_dist.c: In function ‘mco_co_dist_core’: 2025-09-14T09:30:57,481 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-14T09:30:57,482 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2025-09-14T09:30:57,482 | ^ 2025-09-14T09:30:57,483 command_dist.c: In function ‘fname_dist_print’: 2025-09-14T09:30:57,485 command_dist.c:1163:25: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘__off64_t’ {aka ‘long long int’} [-Wsign-compare] 2025-09-14T09:30:57,485 1163 | for (llong i = 0; i < s.st_size / sizeof(ctx_obj_ct_t); i++) { 2025-09-14T09:30:57,485 | ^ 2025-09-14T09:30:57,490 command_dist.c: In function ‘koc_dist_print_nobin’: 2025-09-14T09:30:57,492 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-14T09:30:57,492 1239 | for (int rid = 0; rid < ref_num; rid++) 2025-09-14T09:30:57,492 | ^ 2025-09-14T09:30:57,494 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-14T09:30:57,495 1245 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-14T09:30:57,495 | ^ 2025-09-14T09:30:57,501 command_dist.c: In function ‘dist_print_nobin’: 2025-09-14T09:30:57,503 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-14T09:30:57,503 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2025-09-14T09:30:57,503 | ^ 2025-09-14T09:30:57,506 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-14T09:30:57,506 1356 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-14T09:30:57,507 | ^ 2025-09-14T09:30:57,509 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-14T09:30:57,509 1382 | for (int rid = 0; rid < ref_num; rid++) 2025-09-14T09:30:57,510 | ^ 2025-09-14T09:30:57,953 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2025-09-14T09:30:57,954 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2025-09-14T09:30:57,954 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2025-09-14T09:30:57,954 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:30:57,954 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2025-09-14T09:30:57,955 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2025-09-14T09:30:57,955 | ^~~~~~~~~~~~ 2025-09-14T09:30:58,863 command_dist.c: In function ‘get_dim_shuffle’: 2025-09-14T09:30:58,864 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2025-09-14T09:30:58,864 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-14T09:30:58,864 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:30:58,864 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2025-09-14T09:30:58,864 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-14T09:30:58,864 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:30:59,903 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-14T09:30:59,904 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:30:59,904 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-14T09:30:59,904 | ^~ ~~~~~~~~~ 2025-09-14T09:30:59,904 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-14T09:30:59,905 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-14T09:30:59,905 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:30:59,905 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T09:30:59,906 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-14T09:30:59,906 | ^~~~~~~~~~~~~~~ 2025-09-14T09:30:59,906 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-14T09:30:59,906 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-14T09:30:59,907 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:30:59,909 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T09:30:59,909 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-14T09:30:59,909 | ^~~~~~~~~~~ 2025-09-14T09:30:59,910 command_dist.c:681:38: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:30:59,910 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-14T09:30:59,910 | ^~~~~~~~~~~~~~~~~ 2025-09-14T09:30:59,911 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-14T09:30:59,911 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-14T09:30:59,911 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:30:59,912 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T09:30:59,912 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-14T09:30:59,912 | ^~~~~ 2025-09-14T09:30:59,912 command_dist.c:682:32: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:30:59,913 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-14T09:30:59,913 | ^~~~~~~~~~~ 2025-09-14T09:30:59,913 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-14T09:30:59,914 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-14T09:30:59,914 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:00,193 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-14T09:31:00,195 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:00,195 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-14T09:31:00,195 | ^~ ~~~~~~~~~ 2025-09-14T09:31:00,196 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-14T09:31:00,196 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-14T09:31:00,196 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:00,197 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T09:31:00,197 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-14T09:31:00,198 | ^~~~~~~~~~~~~~~ 2025-09-14T09:31:00,198 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-14T09:31:00,198 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-14T09:31:00,199 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:00,200 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T09:31:00,200 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-14T09:31:00,200 | ^~~~~~~~~~~~~ 2025-09-14T09:31:00,201 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-14T09:31:00,201 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-14T09:31:00,201 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:00,202 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:00,202 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-14T09:31:00,202 | ^ 2025-09-14T09:31:00,203 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2025-09-14T09:31:00,204 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-14T09:31:00,204 | ^~~~~~~~~~ 2025-09-14T09:31:00,205 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-14T09:31:00,205 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-14T09:31:00,205 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:00,206 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:00,206 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-14T09:31:00,206 | ^ 2025-09-14T09:31:00,207 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2025-09-14T09:31:00,207 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-14T09:31:00,207 | ^~~~~~~~~~ 2025-09-14T09:31:00,208 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-14T09:31:00,208 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-14T09:31:00,208 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:00,507 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-14T09:31:00,509 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:00,509 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-14T09:31:00,509 | ^~ ~~~~~~~~~ 2025-09-14T09:31:00,510 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-14T09:31:00,511 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-14T09:31:00,511 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:00,512 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T09:31:00,512 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-14T09:31:00,512 | ^~~~~~~~~~~~~~~ 2025-09-14T09:31:00,513 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-14T09:31:00,513 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-14T09:31:00,514 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:00,515 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T09:31:00,515 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-14T09:31:00,515 | ^~~~~~~~~~~~~ 2025-09-14T09:31:00,516 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-14T09:31:00,516 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-14T09:31:00,516 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:00,519 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T09:31:00,519 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-14T09:31:00,519 | ^~~~~~~~~~~ 2025-09-14T09:31:00,520 command_dist.c:1022:38: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:00,520 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-14T09:31:00,520 | ^~~~~~~~~~~~~~~~~ 2025-09-14T09:31:00,521 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-14T09:31:00,522 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-14T09:31:00,522 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:00,523 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T09:31:00,523 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-14T09:31:00,523 | ^~~~~ 2025-09-14T09:31:00,524 command_dist.c:1023:32: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:00,524 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-14T09:31:00,524 | ^~~~~~~~~~~ 2025-09-14T09:31:00,526 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-14T09:31:00,526 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-14T09:31:00,526 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:00,839 command_dist.c: In function ‘combine_queries’: 2025-09-14T09:31:00,841 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T09:31:00,841 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-14T09:31:00,842 | ^ 2025-09-14T09:31:00,843 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T09:31:00,843 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-14T09:31:00,844 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:00,845 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T09:31:00,846 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-14T09:31:00,846 | ^ 2025-09-14T09:31:00,847 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T09:31:00,848 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-14T09:31:00,848 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:00,851 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:00,851 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-14T09:31:00,851 | ^~ ~~~~~~~~ 2025-09-14T09:31:00,853 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-14T09:31:00,853 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-14T09:31:00,853 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:01,398 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-313/command_dist_wrapper.o -fopenmp 2025-09-14T09:31:01,580 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_set.c -o build/temp.linux-armv7l-cpython-313/command_set.o -fopenmp 2025-09-14T09:31:01,776 command_set.c: In function ‘sketch_operate’: 2025-09-14T09:31:01,776 command_set.c:179:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-14T09:31:01,776 179 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2025-09-14T09:31:01,776 | ^ 2025-09-14T09:31:01,791 command_set.c: In function ‘combin_subset_pans’: 2025-09-14T09:31:01,791 command_set.c:458:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-14T09:31:01,791 458 | free(co_dstat_fpath); 2025-09-14T09:31:01,791 | ^~~~~~~~~~~~~~ 2025-09-14T09:31:01,792 In file included from kssdheaders/global_basic.h:159, 2025-09-14T09:31:01,792 from command_set.c:15: 2025-09-14T09:31:01,792 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-14T09:31:01,792 687 | extern void free (void *__ptr) __THROW; 2025-09-14T09:31:01,792 | ~~~~~~^~~~~ 2025-09-14T09:31:01,799 command_set.c: In function ‘grouping_genomes’: 2025-09-14T09:31:01,800 command_set.c:563:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-14T09:31:01,800 563 | free(co_dstat_fpath); 2025-09-14T09:31:01,800 | ^~~~~~~~~~~~~~ 2025-09-14T09:31:01,800 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-14T09:31:01,801 687 | extern void free (void *__ptr) __THROW; 2025-09-14T09:31:01,801 | ~~~~~~^~~~~ 2025-09-14T09:31:02,020 command_set.c: In function ‘sketch_union’: 2025-09-14T09:31:02,021 command_set.c:72:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T09:31:02,021 72 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T09:31:02,021 | ^ 2025-09-14T09:31:02,021 command_set.c:72:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T09:31:02,021 72 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T09:31:02,021 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,021 command_set.c:83:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:02,022 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-14T09:31:02,022 | ^~ ~~~~~~~~~~~ 2025-09-14T09:31:02,022 command_set.c:83:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:02,022 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-14T09:31:02,022 | ^~~~~~~~~~ 2025-09-14T09:31:02,022 command_set.c:83:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T09:31:02,022 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-14T09:31:02,022 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,022 command_set.c:93:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:02,022 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-14T09:31:02,022 | ^~ ~~~~~~~~~~ 2025-09-14T09:31:02,023 command_set.c:93:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:02,023 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-14T09:31:02,023 | ^~~~~~~~~~ 2025-09-14T09:31:02,023 command_set.c:93:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-14T09:31:02,023 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-14T09:31:02,023 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,183 command_set.c: In function ‘sketch_operate’: 2025-09-14T09:31:02,183 command_set.c:154:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:02,184 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-14T09:31:02,184 | ^~ ~~~~~~~~~~ 2025-09-14T09:31:02,184 command_set.c:154:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:02,184 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-14T09:31:02,184 | ^~~~~~~~~~ 2025-09-14T09:31:02,184 command_set.c:154:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-14T09:31:02,184 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-14T09:31:02,184 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,184 command_set.c:156:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:02,184 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-14T09:31:02,185 | ^~ ~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,185 command_set.c:156:29: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:02,185 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-14T09:31:02,185 | ^~~~~~~~~~ 2025-09-14T09:31:02,185 command_set.c:156:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-14T09:31:02,185 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-14T09:31:02,185 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,185 command_set.c:166:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:02,185 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-14T09:31:02,185 | ^~ ~~~~~~~~~~~ 2025-09-14T09:31:02,186 command_set.c:166:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:02,186 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-14T09:31:02,186 | ^~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,186 command_set.c:166:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-14T09:31:02,186 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-14T09:31:02,186 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,186 command_set.c:170:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:02,186 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-14T09:31:02,186 | ^~ ~~~~~~~~~~~ 2025-09-14T09:31:02,186 command_set.c:170:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:02,186 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-14T09:31:02,187 | ^~~~~~~~~~ 2025-09-14T09:31:02,187 command_set.c:170:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T09:31:02,187 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-14T09:31:02,187 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,187 command_set.c:175:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:02,187 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-14T09:31:02,187 | ^~ ~~~~~~~~~~~ 2025-09-14T09:31:02,187 command_set.c:175:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:02,187 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-14T09:31:02,187 | ^~~~~~~~~~ 2025-09-14T09:31:02,187 command_set.c:175:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T09:31:02,187 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-14T09:31:02,188 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,188 command_set.c:188:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:02,188 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-14T09:31:02,188 | ^~ ~~~~~~~~~~~ 2025-09-14T09:31:02,188 command_set.c:188:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:02,188 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-14T09:31:02,188 | ^~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,188 command_set.c:188:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-14T09:31:02,188 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-14T09:31:02,188 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,188 command_set.c:193:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T09:31:02,189 193 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T09:31:02,189 | ^ 2025-09-14T09:31:02,189 command_set.c:193:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T09:31:02,189 193 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T09:31:02,189 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,396 command_set.c: In function ‘uniq_sketch_union’: 2025-09-14T09:31:02,397 command_set.c:220:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T09:31:02,397 220 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-09-14T09:31:02,397 | ^ 2025-09-14T09:31:02,397 command_set.c:220:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2025-09-14T09:31:02,397 220 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-09-14T09:31:02,397 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,397 command_set.c:235:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T09:31:02,397 235 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T09:31:02,397 | ^ 2025-09-14T09:31:02,398 command_set.c:235:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T09:31:02,398 235 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T09:31:02,398 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,398 command_set.c:248:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:02,398 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-14T09:31:02,398 | ^~ ~~~~~~~~~~~ 2025-09-14T09:31:02,399 command_set.c:248:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:02,399 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-14T09:31:02,399 | ^~~~~~~~~~ 2025-09-14T09:31:02,399 command_set.c:248:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T09:31:02,399 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-14T09:31:02,399 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,400 command_set.c:260:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:02,400 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-14T09:31:02,400 | ^~ ~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,400 command_set.c:260:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:02,400 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-14T09:31:02,400 | ^~~~~~~~~~ 2025-09-14T09:31:02,401 command_set.c:260:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-14T09:31:02,401 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-14T09:31:02,401 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,579 command_set.c: In function ‘combin_pans’: 2025-09-14T09:31:02,579 command_set.c:298:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:02,580 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T09:31:02,580 | ^~ ~~~~~~~~~~~ 2025-09-14T09:31:02,580 command_set.c:298:25: note: directive argument in the range [0, 1073741823] 2025-09-14T09:31:02,580 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T09:31:02,580 | ^~~~~~~~~~ 2025-09-14T09:31:02,581 command_set.c:298:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2025-09-14T09:31:02,581 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T09:31:02,581 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,582 command_set.c:301:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:02,582 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T09:31:02,582 | ^~ ~~~~~~~~~~ 2025-09-14T09:31:02,582 command_set.c:301:25: note: directive argument in the range [0, 1073741823] 2025-09-14T09:31:02,582 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T09:31:02,582 | ^~~~~~~~~~ 2025-09-14T09:31:02,583 command_set.c:301:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2025-09-14T09:31:02,583 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T09:31:02,583 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,584 command_set.c:343:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T09:31:02,585 343 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T09:31:02,585 | ^ 2025-09-14T09:31:02,585 command_set.c:343:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T09:31:02,585 343 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T09:31:02,585 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,858 command_set.c: In function ‘combin_subset_pans’: 2025-09-14T09:31:02,859 command_set.c:470:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:02,859 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-14T09:31:02,859 | ^~ ~~~~~~~~~~~ 2025-09-14T09:31:02,860 command_set.c:470:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:02,860 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-14T09:31:02,860 | ^~~~~~~~~~ 2025-09-14T09:31:02,860 command_set.c:470:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T09:31:02,860 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-14T09:31:02,861 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,861 command_set.c:476:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:02,862 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-14T09:31:02,862 | ^~ ~~~~~~~~~~ 2025-09-14T09:31:02,862 command_set.c:476:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:02,862 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-14T09:31:02,862 | ^~~~~~~~~~ 2025-09-14T09:31:02,863 command_set.c:476:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-14T09:31:02,863 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-14T09:31:02,863 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,864 command_set.c:482:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:02,864 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T09:31:02,864 | ^~ ~~~~~~~~~~~ 2025-09-14T09:31:02,864 command_set.c:482:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:02,865 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T09:31:02,865 | ^~~~~~~~~~ 2025-09-14T09:31:02,865 command_set.c:482:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T09:31:02,865 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T09:31:02,865 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,867 command_set.c:513:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:02,867 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T09:31:02,867 | ^~ ~~~~~~~~~~ 2025-09-14T09:31:02,867 command_set.c:513:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:02,867 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T09:31:02,868 | ^~~~~~~~~~ 2025-09-14T09:31:02,868 command_set.c:513:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-14T09:31:02,868 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T09:31:02,868 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:02,869 command_set.c:524:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T09:31:02,869 524 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T09:31:02,869 | ^ 2025-09-14T09:31:02,870 command_set.c:524:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T09:31:02,870 524 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T09:31:02,870 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:03,167 command_set.c: In function ‘grouping_genomes’: 2025-09-14T09:31:03,169 command_set.c:575:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:03,169 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-14T09:31:03,169 | ^~ ~~~~~~~~~~~ 2025-09-14T09:31:03,170 command_set.c:575:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:03,170 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-14T09:31:03,170 | ^~~~~~~~~~ 2025-09-14T09:31:03,170 command_set.c:575:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T09:31:03,171 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-14T09:31:03,171 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:03,172 command_set.c:581:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:03,172 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-14T09:31:03,172 | ^~ ~~~~~~~~~~ 2025-09-14T09:31:03,173 command_set.c:581:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:03,173 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-14T09:31:03,173 | ^~~~~~~~~~ 2025-09-14T09:31:03,173 command_set.c:581:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-14T09:31:03,174 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-14T09:31:03,174 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:03,175 command_set.c:613:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:03,175 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T09:31:03,175 | ^~ ~~~~~~~~~~~ 2025-09-14T09:31:03,176 command_set.c:613:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:03,176 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T09:31:03,176 | ^~~~~~~~~~ 2025-09-14T09:31:03,177 command_set.c:613:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T09:31:03,177 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T09:31:03,177 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:03,178 command_set.c:635:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T09:31:03,178 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T09:31:03,179 | ^~ ~~~~~~~~~~ 2025-09-14T09:31:03,179 command_set.c:635:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T09:31:03,179 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T09:31:03,179 | ^~~~~~~~~~ 2025-09-14T09:31:03,180 command_set.c:635:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-14T09:31:03,180 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T09:31:03,180 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:03,181 command_set.c:646:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T09:31:03,181 646 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T09:31:03,182 | ^ 2025-09-14T09:31:03,182 command_set.c:646:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T09:31:03,182 646 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T09:31:03,182 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T09:31:03,520 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-313/command_shuffle.o -fopenmp 2025-09-14T09:31:03,862 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c global_basic.c -o build/temp.linux-armv7l-cpython-313/global_basic.o -fopenmp 2025-09-14T09:31:04,041 global_basic.c: In function ‘organize_infile_list’: 2025-09-14T09:31:04,041 global_basic.c:195:20: error: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2025-09-14T09:31:04,041 195 | while (isspace(*buf)) buf++; 2025-09-14T09:31:04,042 | ^~~~~~~ 2025-09-14T09:31:04,042 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2025-09-14T09:31:04,042 34 | #include 2025-09-14T09:31:04,042 +++ |+#include 2025-09-14T09:31:04,042 35 | 2025-09-14T09:31:04,042 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T09:31:04,043 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-14T09:31:04,043 | ~~^ 2025-09-14T09:31:04,043 | | 2025-09-14T09:31:04,043 | long unsigned int 2025-09-14T09:31:04,043 | %u 2025-09-14T09:31:04,043 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-14T09:31:04,044 | ~~~~~~~~~~~ 2025-09-14T09:31:04,044 | | 2025-09-14T09:31:04,044 | size_t {aka unsigned int} 2025-09-14T09:31:04,044 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T09:31:04,044 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-14T09:31:04,045 | ~~^ 2025-09-14T09:31:04,045 | | 2025-09-14T09:31:04,045 | long unsigned int 2025-09-14T09:31:04,045 | %u 2025-09-14T09:31:04,045 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-14T09:31:04,045 | ~~~~~~~~~~~ 2025-09-14T09:31:04,045 | | 2025-09-14T09:31:04,046 | size_t {aka unsigned int} 2025-09-14T09:31:04,067 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-14T09:31:04,235 ERROR: python setup.py bdist_wheel exited with 1 2025-09-14T09:31:04,249 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-14T09:31:04,249 exec(compile('"'"''"'"''"'"' 2025-09-14T09:31:04,249 # This is -- a caller that pip uses to run setup.py 2025-09-14T09:31:04,249 # 2025-09-14T09:31:04,249 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-14T09:31:04,249 # import from `distutils.core` to work with newer packaging standards. 2025-09-14T09:31:04,249 # - It provides a clear error message when setuptools is not installed. 2025-09-14T09:31:04,249 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-14T09:31:04,249 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-14T09:31:04,249 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-14T09:31:04,249 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-14T09:31:04,249 import os, sys, tokenize, traceback 2025-09-14T09:31:04,249 2025-09-14T09:31:04,249 try: 2025-09-14T09:31:04,249 import setuptools 2025-09-14T09:31:04,249 except ImportError: 2025-09-14T09:31:04,249 print( 2025-09-14T09:31:04,249 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-14T09:31:04,249 "the build environment with exception:", 2025-09-14T09:31:04,249 file=sys.stderr, 2025-09-14T09:31:04,249 ) 2025-09-14T09:31:04,249 traceback.print_exc() 2025-09-14T09:31:04,249 sys.exit(1) 2025-09-14T09:31:04,249 2025-09-14T09:31:04,249 __file__ = %r 2025-09-14T09:31:04,249 sys.argv[0] = __file__ 2025-09-14T09:31:04,249 2025-09-14T09:31:04,249 if os.path.exists(__file__): 2025-09-14T09:31:04,249 filename = __file__ 2025-09-14T09:31:04,249 with tokenize.open(__file__) as f: 2025-09-14T09:31:04,249 setup_py_code = f.read() 2025-09-14T09:31:04,249 else: 2025-09-14T09:31:04,249 filename = "" 2025-09-14T09:31:04,249 setup_py_code = "from setuptools import setup; setup()" 2025-09-14T09:31:04,249 2025-09-14T09:31:04,249 exec(compile(setup_py_code, filename, "exec")) 2025-09-14T09:31:04,249 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-a5bcw3n6/kssdtree_68c920252cae42ba8e3f4e541accf753/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-p8q54u0_[/] 2025-09-14T09:31:04,250 [bold magenta]cwd[/]: /tmp/pip-wheel-a5bcw3n6/kssdtree_68c920252cae42ba8e3f4e541accf753/ 2025-09-14T09:31:04,250 Building wheel for kssdtree (setup.py): finished with status 'error' 2025-09-14T09:31:04,251 ERROR: Failed building wheel for kssdtree 2025-09-14T09:31:04,252 Running setup.py clean for kssdtree 2025-09-14T09:31:04,253 Running command python setup.py clean 2025-09-14T09:31:05,532 running clean 2025-09-14T09:31:05,703 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-14T09:31:05,704 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-14T09:31:05,704 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-14T09:31:05,704 'build/scripts-3.13' does not exist -- can't clean it 2025-09-14T09:31:05,704 removing 'build' 2025-09-14T09:31:05,835 Failed to build kssdtree 2025-09-14T09:31:05,836 ERROR: Failed to build one or more wheels 2025-09-14T09:31:05,837 Exception information: 2025-09-14T09:31:05,837 Traceback (most recent call last): 2025-09-14T09:31:05,837 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-14T09:31:05,837 status = _inner_run() 2025-09-14T09:31:05,837 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-14T09:31:05,837 return self.run(options, args) 2025-09-14T09:31:05,837 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-14T09:31:05,837 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-14T09:31:05,837 return func(self, options, args) 2025-09-14T09:31:05,837 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-14T09:31:05,837 raise CommandError("Failed to build one or more wheels") 2025-09-14T09:31:05,837 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-14T09:31:05,841 Removed build tracker: '/tmp/pip-build-tracker-hzs6lkbr'