2025-09-14T10:06:01,809 Created temporary directory: /tmp/pip-build-tracker-9r4qvwuo 2025-09-14T10:06:01,809 Initialized build tracking at /tmp/pip-build-tracker-9r4qvwuo 2025-09-14T10:06:01,810 Created build tracker: /tmp/pip-build-tracker-9r4qvwuo 2025-09-14T10:06:01,810 Entered build tracker: /tmp/pip-build-tracker-9r4qvwuo 2025-09-14T10:06:01,810 Created temporary directory: /tmp/pip-wheel-23_rla6n 2025-09-14T10:06:01,814 Created temporary directory: /tmp/pip-ephem-wheel-cache-hqim4v07 2025-09-14T10:06:01,884 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-14T10:06:01,887 2 location(s) to search for versions of kssdtree: 2025-09-14T10:06:01,887 * https://pypi.org/simple/kssdtree/ 2025-09-14T10:06:01,887 * https://www.piwheels.org/simple/kssdtree/ 2025-09-14T10:06:01,888 Fetching project page and analyzing links: https://pypi.org/simple/kssdtree/ 2025-09-14T10:06:01,888 Getting page https://pypi.org/simple/kssdtree/ 2025-09-14T10:06:01,890 Found index url https://pypi.org/simple/ 2025-09-14T10:06:01,978 Fetched page https://pypi.org/simple/kssdtree/ as application/vnd.pypi.simple.v1+json 2025-09-14T10:06:01,982 Found link https://files.pythonhosted.org/packages/d5/1e/9e5c5945a44bb40002d1c259f734a531999fa6e87db89fe7c7ddcfc583cc/kssdtree-1.1.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.1 2025-09-14T10:06:01,982 Found link https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.2 2025-09-14T10:06:01,982 Found link https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.3 2025-09-14T10:06:01,983 Found link https://files.pythonhosted.org/packages/20/ea/b0301924e3f7d367cbb7b8da66837dba9af2a332bf56ed35e03a33faee76/kssdtree-1.1.4.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.4 2025-09-14T10:06:01,983 Found link https://files.pythonhosted.org/packages/41/65/ed35110b84bc0dd02b9add0104f10160754d2ea0882191767d512146a884/kssdtree-1.1.6.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.6 2025-09-14T10:06:01,984 Found link https://files.pythonhosted.org/packages/cd/4b/d886cbcc573ff0969da7d9c756049925b86141e60ee6708dfbbe0644d008/kssdtree-1.1.7.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.7 2025-09-14T10:06:01,984 Found link https://files.pythonhosted.org/packages/7e/8a/a62c8adc92df69ab8cb242827ee64a3e2b6d5c89b83425785dd00605af17/kssdtree-1.1.8.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.8 2025-09-14T10:06:01,984 Found link https://files.pythonhosted.org/packages/da/db/e458cca6427752c05428d2378ccdee631d32f760174fdaba65f73125e71b/kssdtree-1.1.9.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.9 2025-09-14T10:06:01,985 Found link https://files.pythonhosted.org/packages/9d/47/017180a30e73e421372377cbe6d01c5e51a5108ea2177f20ccd7d283f8d1/kssdtree-2.0.0.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.0 2025-09-14T10:06:01,985 Found link https://files.pythonhosted.org/packages/ba/39/d443cac955912a0371c93b797311cb9ec3a8d6ee0a5d7673376d826aa6b2/kssdtree-2.0.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.1 2025-09-14T10:06:01,985 Found link https://files.pythonhosted.org/packages/2e/32/e53c0e3735cbc913b2c96b4e0e1c1005fe816a4d71b38b80cdcfb5c67fa8/kssdtree-2.0.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.2 2025-09-14T10:06:01,986 Found link https://files.pythonhosted.org/packages/c0/0f/effc10c8e76dbe3b9a35a4b4d9e65a0a889ee805e10334541c3ca7ae3b94/kssdtree-2.0.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.3 2025-09-14T10:06:01,986 Found link https://files.pythonhosted.org/packages/fc/8d/d3790baa2f2f0a01c913005b94a82dc13ef601e7015e662ccff94bb1b458/kssdtree-2.0.4.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.4 2025-09-14T10:06:01,986 Found link https://files.pythonhosted.org/packages/b5/f8/19480a4c57704944f973ebf534f9582054949cca20170a33c6f874974440/kssdtree-2.0.5.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.5 2025-09-14T10:06:01,987 Found link https://files.pythonhosted.org/packages/46/ef/2d920d5d2fceded48c7add363e04f49ae85414bcd4360e1295d6fddc4a24/kssdtree-2.0.6.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.6 2025-09-14T10:06:01,987 Found link https://files.pythonhosted.org/packages/9c/1c/c6b3f05465d145856ac992328bd59e776286a59b120254620c1dbffcf67f/kssdtree-2.0.7.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.7 2025-09-14T10:06:01,987 Found link https://files.pythonhosted.org/packages/82/9b/dac2af6572f0c4421e5ba8341dcfddac466de30c62acfa019d9ef70b2670/kssdtree-2.0.8.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.8 2025-09-14T10:06:01,988 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdtree/ 2025-09-14T10:06:01,988 Getting page https://www.piwheels.org/simple/kssdtree/ 2025-09-14T10:06:01,989 Found index url https://www.piwheels.org/simple/ 2025-09-14T10:06:02,265 Fetched page https://www.piwheels.org/simple/kssdtree/ as text/html 2025-09-14T10:06:02,279 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv6l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,279 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv7l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,279 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv6l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,280 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv7l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,280 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp311-cp311-linux_armv6l.whl#sha256=e1e02281e0fc8ed3b80b596a811ca2a9b50cb7affb3649479228d59c074c1f94 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,280 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp311-cp311-linux_armv7l.whl#sha256=e1e02281e0fc8ed3b80b596a811ca2a9b50cb7affb3649479228d59c074c1f94 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,280 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp311-cp311-linux_armv6l.whl#sha256=cecf3000ed0ffcd720412023d8de2f213356363c01aa3193441c040ed34353d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,281 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp311-cp311-linux_armv7l.whl#sha256=cecf3000ed0ffcd720412023d8de2f213356363c01aa3193441c040ed34353d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,281 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp39-cp39-linux_armv6l.whl#sha256=db08595adc89347b61965ba36e918055e8a0dc5f6a2b0bdfe16133eb363412d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,281 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp39-cp39-linux_armv7l.whl#sha256=db08595adc89347b61965ba36e918055e8a0dc5f6a2b0bdfe16133eb363412d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,281 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp311-cp311-linux_armv6l.whl#sha256=97a69f799c2d1b7024a9033b8a1e3fc17af4748a1ed726f52397d884303eb870 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,281 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp311-cp311-linux_armv7l.whl#sha256=97a69f799c2d1b7024a9033b8a1e3fc17af4748a1ed726f52397d884303eb870 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,282 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp39-cp39-linux_armv6l.whl#sha256=00938a03bead64e58bc1928832b7952b04d844e79b41da12160490c7edbb9e9f (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,282 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp39-cp39-linux_armv6l.whl#sha256=f629766f3426bb8a83c6f4adca8b02b03cb85452c129c9694cef65efd715fabd (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,282 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp39-cp39-linux_armv7l.whl#sha256=f629766f3426bb8a83c6f4adca8b02b03cb85452c129c9694cef65efd715fabd (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,283 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp311-cp311-linux_armv6l.whl#sha256=ae7417e30efd12d8c6800d4167141c94a93f1ce51afd5ae9196cdfb6057ca7d2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,283 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp311-cp311-linux_armv7l.whl#sha256=ae7417e30efd12d8c6800d4167141c94a93f1ce51afd5ae9196cdfb6057ca7d2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,283 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv6l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,283 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv7l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,283 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.1-cp311-cp311-linux_armv6l.whl#sha256=8b8c3190a5a4a010758772e9d53c3c12436541437bc9c503bec9a8f6a007cdcc (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,284 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.1-cp311-cp311-linux_armv7l.whl#sha256=8b8c3190a5a4a010758772e9d53c3c12436541437bc9c503bec9a8f6a007cdcc (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,284 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.0-cp311-cp311-linux_armv6l.whl#sha256=16a2e46376ed2874435371fd57a97405d4b631b35c014b9e395a4528a1e655b8 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,284 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv6l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,286 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv7l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,286 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp311-cp311-linux_armv6l.whl#sha256=388a8dabd657ea83e6d22b52300337c74e9d84e506806cfd4d2a76eb98777e17 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,286 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp311-cp311-linux_armv7l.whl#sha256=388a8dabd657ea83e6d22b52300337c74e9d84e506806cfd4d2a76eb98777e17 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,286 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp39-cp39-linux_armv6l.whl#sha256=e1df896451d30c12e01aceb3eb91f0f7dfe0ee6f16fd66864fdefbc21cc54856 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,286 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp39-cp39-linux_armv7l.whl#sha256=e1df896451d30c12e01aceb3eb91f0f7dfe0ee6f16fd66864fdefbc21cc54856 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,287 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv6l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,287 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv7l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,287 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv6l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,287 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv7l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,287 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv6l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,287 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv7l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,288 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,288 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,288 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,288 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,288 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,288 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,289 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv6l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,289 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv7l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,289 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,289 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,289 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,289 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,290 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,290 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,290 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,290 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,290 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv6l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,290 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv7l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,291 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,291 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,291 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,291 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T10:06:02,291 Skipping link: not a file: https://www.piwheels.org/simple/kssdtree/ 2025-09-14T10:06:02,292 Skipping link: not a file: https://pypi.org/simple/kssdtree/ 2025-09-14T10:06:02,319 Given no hashes to check 1 links for project 'kssdtree': discarding no candidates 2025-09-14T10:06:02,321 Collecting kssdtree==2.0.2 2025-09-14T10:06:02,322 Created temporary directory: /tmp/pip-unpack-5namdwbb 2025-09-14T10:06:02,472 Downloading kssdtree-2.0.2.tar.gz (112 kB) 2025-09-14T10:06:02,588 Added kssdtree==2.0.2 from https://files.pythonhosted.org/packages/2e/32/e53c0e3735cbc913b2c96b4e0e1c1005fe816a4d71b38b80cdcfb5c67fa8/kssdtree-2.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-9r4qvwuo' 2025-09-14T10:06:02,589 Running setup.py (path:/tmp/pip-wheel-23_rla6n/kssdtree_8e57124864004a77a53e8750e95cb79f/setup.py) egg_info for package kssdtree 2025-09-14T10:06:02,590 Created temporary directory: /tmp/pip-pip-egg-info-8m_t1h6_ 2025-09-14T10:06:02,590 Preparing metadata (setup.py): started 2025-09-14T10:06:02,591 Running command python setup.py egg_info 2025-09-14T10:06:03,975 running egg_info 2025-09-14T10:06:04,076 creating /tmp/pip-pip-egg-info-8m_t1h6_/kssdtree.egg-info 2025-09-14T10:06:04,076 writing /tmp/pip-pip-egg-info-8m_t1h6_/kssdtree.egg-info/PKG-INFO 2025-09-14T10:06:04,078 writing dependency_links to /tmp/pip-pip-egg-info-8m_t1h6_/kssdtree.egg-info/dependency_links.txt 2025-09-14T10:06:04,078 writing requirements to /tmp/pip-pip-egg-info-8m_t1h6_/kssdtree.egg-info/requires.txt 2025-09-14T10:06:04,079 writing top-level names to /tmp/pip-pip-egg-info-8m_t1h6_/kssdtree.egg-info/top_level.txt 2025-09-14T10:06:04,079 writing manifest file '/tmp/pip-pip-egg-info-8m_t1h6_/kssdtree.egg-info/SOURCES.txt' 2025-09-14T10:06:04,472 reading manifest file '/tmp/pip-pip-egg-info-8m_t1h6_/kssdtree.egg-info/SOURCES.txt' 2025-09-14T10:06:04,473 reading manifest template 'MANIFEST.in' 2025-09-14T10:06:04,481 writing manifest file '/tmp/pip-pip-egg-info-8m_t1h6_/kssdtree.egg-info/SOURCES.txt' 2025-09-14T10:06:04,620 Preparing metadata (setup.py): finished with status 'done' 2025-09-14T10:06:04,624 Source in /tmp/pip-wheel-23_rla6n/kssdtree_8e57124864004a77a53e8750e95cb79f has version 2.0.2, which satisfies requirement kssdtree==2.0.2 from https://files.pythonhosted.org/packages/2e/32/e53c0e3735cbc913b2c96b4e0e1c1005fe816a4d71b38b80cdcfb5c67fa8/kssdtree-2.0.2.tar.gz 2025-09-14T10:06:04,625 Removed kssdtree==2.0.2 from https://files.pythonhosted.org/packages/2e/32/e53c0e3735cbc913b2c96b4e0e1c1005fe816a4d71b38b80cdcfb5c67fa8/kssdtree-2.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-9r4qvwuo' 2025-09-14T10:06:04,628 Created temporary directory: /tmp/pip-unpack-i0d2s_2g 2025-09-14T10:06:04,628 Created temporary directory: /tmp/pip-unpack-w4vc0j3d 2025-09-14T10:06:04,628 Building wheels for collected packages: kssdtree 2025-09-14T10:06:04,630 Created temporary directory: /tmp/pip-wheel-mzfn9t99 2025-09-14T10:06:04,630 DEPRECATION: Building 'kssdtree' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'kssdtree'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-14T10:06:04,631 Building wheel for kssdtree (setup.py): started 2025-09-14T10:06:04,632 Destination directory: /tmp/pip-wheel-mzfn9t99 2025-09-14T10:06:04,632 Running command python setup.py bdist_wheel 2025-09-14T10:06:05,807 running bdist_wheel 2025-09-14T10:06:06,242 running build 2025-09-14T10:06:06,242 running build_py 2025-09-14T10:06:06,333 creating build/lib.linux-armv7l-cpython-313 2025-09-14T10:06:06,333 copying kssdtree.py -> build/lib.linux-armv7l-cpython-313 2025-09-14T10:06:06,334 copying toolutils.py -> build/lib.linux-armv7l-cpython-313 2025-09-14T10:06:06,335 running egg_info 2025-09-14T10:06:06,423 writing kssdtree.egg-info/PKG-INFO 2025-09-14T10:06:06,425 writing dependency_links to kssdtree.egg-info/dependency_links.txt 2025-09-14T10:06:06,425 writing requirements to kssdtree.egg-info/requires.txt 2025-09-14T10:06:06,426 writing top-level names to kssdtree.egg-info/top_level.txt 2025-09-14T10:06:06,515 reading manifest file 'kssdtree.egg-info/SOURCES.txt' 2025-09-14T10:06:06,520 reading manifest template 'MANIFEST.in' 2025-09-14T10:06:06,528 writing manifest file 'kssdtree.egg-info/SOURCES.txt' 2025-09-14T10:06:06,529 running build_ext 2025-09-14T10:06:06,881 building 'kssd' extension 2025-09-14T10:06:06,883 creating build/temp.linux-armv7l-cpython-313 2025-09-14T10:06:06,885 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c co2mco.c -o build/temp.linux-armv7l-cpython-313/co2mco.o -fopenmp 2025-09-14T10:06:07,086 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2025-09-14T10:06:07,086 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-14T10:06:07,087 109 | for (unsigned int i = 0; i < comp_num; i++) { 2025-09-14T10:06:07,087 | ^ 2025-09-14T10:06:07,091 co2mco.c: In function ‘co2unitllmco’: 2025-09-14T10:06:07,091 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-14T10:06:07,091 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2025-09-14T10:06:07,091 | ^ 2025-09-14T10:06:07,896 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_composite.c -o build/temp.linux-armv7l-cpython-313/command_composite.o -fopenmp 2025-09-14T10:06:08,314 command_composite.c: In function ‘get_species_abundance’: 2025-09-14T10:06:08,315 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-14T10:06:08,315 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2025-09-14T10:06:08,315 | ^~ 2025-09-14T10:06:08,315 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-14T10:06:08,315 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2025-09-14T10:06:08,315 | ^~ 2025-09-14T10:06:08,316 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:08,316 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-14T10:06:08,316 | ^ 2025-09-14T10:06:08,317 command_composite.c:64:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:08,317 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-14T10:06:08,317 | ^~~~~~~~~~ 2025-09-14T10:06:08,317 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-14T10:06:08,317 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-14T10:06:08,318 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:08,318 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:08,318 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-14T10:06:08,318 | ^ 2025-09-14T10:06:08,319 command_composite.c:70:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:08,319 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-14T10:06:08,319 | ^~~~~~~~~~ 2025-09-14T10:06:08,319 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-14T10:06:08,319 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-14T10:06:08,319 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:08,320 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:08,320 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-14T10:06:08,320 | ^ 2025-09-14T10:06:08,320 command_composite.c:76:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:08,321 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-14T10:06:08,321 | ^~~~~~~~~~ 2025-09-14T10:06:08,321 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-14T10:06:08,321 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-14T10:06:08,321 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:08,322 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:08,322 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-14T10:06:08,322 | ^ 2025-09-14T10:06:08,322 command_composite.c:82:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:08,322 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-14T10:06:08,322 | ^~~~~~~~~~ 2025-09-14T10:06:08,323 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-14T10:06:08,323 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-14T10:06:08,323 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:08,323 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:08,324 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-14T10:06:08,324 | ^ 2025-09-14T10:06:08,324 command_composite.c:88:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:08,324 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-14T10:06:08,324 | ^~~~~~~~~~~~ 2025-09-14T10:06:08,325 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2025-09-14T10:06:08,325 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-14T10:06:08,325 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:08,602 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist.c -o build/temp.linux-armv7l-cpython-313/command_dist.o -fopenmp 2025-09-14T10:06:09,248 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-14T10:06:09,249 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T10:06:09,250 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-14T10:06:09,250 | ~~^ 2025-09-14T10:06:09,250 | | 2025-09-14T10:06:09,250 | long unsigned int 2025-09-14T10:06:09,250 | %u 2025-09-14T10:06:09,250 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-14T10:06:09,250 | ~~~~~~~ 2025-09-14T10:06:09,250 | | 2025-09-14T10:06:09,250 | size_t {aka unsigned int} 2025-09-14T10:06:09,251 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T10:06:09,251 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-14T10:06:09,252 | ~~^ 2025-09-14T10:06:09,252 | | 2025-09-14T10:06:09,252 | long unsigned int 2025-09-14T10:06:09,252 | %u 2025-09-14T10:06:09,252 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-14T10:06:09,252 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-14T10:06:09,252 | ~~~~~~~~~ 2025-09-14T10:06:09,252 | | 2025-09-14T10:06:09,252 | size_t {aka unsigned int} 2025-09-14T10:06:09,253 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-14T10:06:09,253 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-14T10:06:09,254 | ~~^ 2025-09-14T10:06:09,254 | | 2025-09-14T10:06:09,254 | long unsigned int 2025-09-14T10:06:09,254 | %u 2025-09-14T10:06:09,254 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-14T10:06:09,254 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-14T10:06:09,254 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:09,254 | | 2025-09-14T10:06:09,254 | unsigned int 2025-09-14T10:06:09,257 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-14T10:06:09,257 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2025-09-14T10:06:09,257 | ^ 2025-09-14T10:06:09,265 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-14T10:06:09,267 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T10:06:09,267 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-14T10:06:09,267 | ~~^ ~~~~~~~ 2025-09-14T10:06:09,267 | | | 2025-09-14T10:06:09,267 | long unsigned int size_t {aka unsigned int} 2025-09-14T10:06:09,267 | %u 2025-09-14T10:06:09,269 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T10:06:09,270 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-14T10:06:09,270 | ~~^ 2025-09-14T10:06:09,270 | | 2025-09-14T10:06:09,270 | long unsigned int 2025-09-14T10:06:09,270 | %u 2025-09-14T10:06:09,270 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-14T10:06:09,270 | ~~~~~~~~~ 2025-09-14T10:06:09,270 | | 2025-09-14T10:06:09,270 | size_t {aka unsigned int} 2025-09-14T10:06:09,272 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-14T10:06:09,272 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-14T10:06:09,272 | ~~^ 2025-09-14T10:06:09,272 | | 2025-09-14T10:06:09,272 | long unsigned int 2025-09-14T10:06:09,273 | %u 2025-09-14T10:06:09,273 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-14T10:06:09,273 865 | (size_t) b * unitsz_distf_mapped); 2025-09-14T10:06:09,273 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:09,273 | | 2025-09-14T10:06:09,273 | unsigned int 2025-09-14T10:06:09,275 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2025-09-14T10:06:09,275 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2025-09-14T10:06:09,275 | ^~~~~~~ 2025-09-14T10:06:09,276 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2025-09-14T10:06:09,276 809 | struct stat cbd_fcode_stat; 2025-09-14T10:06:09,276 | ^~~~~~~~~~~~~~ 2025-09-14T10:06:09,277 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2025-09-14T10:06:09,277 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-14T10:06:09,277 | ^~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:09,278 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2025-09-14T10:06:09,278 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-14T10:06:09,278 | ^~~~~~~~~~~~~~~~~ 2025-09-14T10:06:09,285 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-14T10:06:09,288 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T10:06:09,288 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-14T10:06:09,288 | ~~^ 2025-09-14T10:06:09,288 | | 2025-09-14T10:06:09,288 | long unsigned int 2025-09-14T10:06:09,288 | %u 2025-09-14T10:06:09,288 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-14T10:06:09,288 | ~~~~~~~ 2025-09-14T10:06:09,289 | | 2025-09-14T10:06:09,289 | size_t {aka unsigned int} 2025-09-14T10:06:09,291 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T10:06:09,291 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-14T10:06:09,291 | ~~^ 2025-09-14T10:06:09,291 | | 2025-09-14T10:06:09,291 | long unsigned int 2025-09-14T10:06:09,291 | %u 2025-09-14T10:06:09,291 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-14T10:06:09,292 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-14T10:06:09,292 | ~~~~~~~~~ 2025-09-14T10:06:09,292 | | 2025-09-14T10:06:09,292 | size_t {aka unsigned int} 2025-09-14T10:06:09,294 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-14T10:06:09,294 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-14T10:06:09,294 | ~~^ 2025-09-14T10:06:09,294 | | 2025-09-14T10:06:09,294 | long unsigned int 2025-09-14T10:06:09,294 | %u 2025-09-14T10:06:09,294 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-14T10:06:09,295 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-14T10:06:09,295 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:09,295 | | 2025-09-14T10:06:09,295 | unsigned int 2025-09-14T10:06:09,300 command_dist.c: In function ‘mco_co_dist_core’: 2025-09-14T10:06:09,301 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-14T10:06:09,302 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2025-09-14T10:06:09,302 | ^ 2025-09-14T10:06:09,303 command_dist.c: In function ‘fname_dist_print’: 2025-09-14T10:06:09,304 command_dist.c:1163:25: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘__off64_t’ {aka ‘long long int’} [-Wsign-compare] 2025-09-14T10:06:09,305 1163 | for (llong i = 0; i < s.st_size / sizeof(ctx_obj_ct_t); i++) { 2025-09-14T10:06:09,305 | ^ 2025-09-14T10:06:09,310 command_dist.c: In function ‘koc_dist_print_nobin’: 2025-09-14T10:06:09,312 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-14T10:06:09,312 1239 | for (int rid = 0; rid < ref_num; rid++) 2025-09-14T10:06:09,312 | ^ 2025-09-14T10:06:09,314 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-14T10:06:09,314 1245 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-14T10:06:09,315 | ^ 2025-09-14T10:06:09,321 command_dist.c: In function ‘dist_print_nobin’: 2025-09-14T10:06:09,322 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-14T10:06:09,323 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2025-09-14T10:06:09,323 | ^ 2025-09-14T10:06:09,326 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-14T10:06:09,326 1356 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-14T10:06:09,326 | ^ 2025-09-14T10:06:09,329 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-14T10:06:09,329 1382 | for (int rid = 0; rid < ref_num; rid++) 2025-09-14T10:06:09,329 | ^ 2025-09-14T10:06:09,772 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2025-09-14T10:06:09,772 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2025-09-14T10:06:09,772 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2025-09-14T10:06:09,772 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:09,772 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2025-09-14T10:06:09,773 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2025-09-14T10:06:09,773 | ^~~~~~~~~~~~ 2025-09-14T10:06:10,685 command_dist.c: In function ‘get_dim_shuffle’: 2025-09-14T10:06:10,685 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2025-09-14T10:06:10,685 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-14T10:06:10,685 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:10,685 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2025-09-14T10:06:10,686 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-14T10:06:10,686 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:11,725 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-14T10:06:11,726 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:11,726 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-14T10:06:11,727 | ^~ ~~~~~~~~~ 2025-09-14T10:06:11,727 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-14T10:06:11,727 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-14T10:06:11,727 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:11,728 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T10:06:11,728 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-14T10:06:11,728 | ^~~~~~~~~~~~~~~ 2025-09-14T10:06:11,729 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-14T10:06:11,729 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-14T10:06:11,729 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:11,731 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T10:06:11,732 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-14T10:06:11,732 | ^~~~~~~~~~~ 2025-09-14T10:06:11,732 command_dist.c:681:38: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:11,733 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-14T10:06:11,733 | ^~~~~~~~~~~~~~~~~ 2025-09-14T10:06:11,733 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-14T10:06:11,733 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-14T10:06:11,734 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:11,734 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T10:06:11,734 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-14T10:06:11,734 | ^~~~~ 2025-09-14T10:06:11,735 command_dist.c:682:32: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:11,735 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-14T10:06:11,735 | ^~~~~~~~~~~ 2025-09-14T10:06:11,736 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-14T10:06:11,736 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-14T10:06:11,736 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:12,016 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-14T10:06:12,017 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:12,018 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-14T10:06:12,018 | ^~ ~~~~~~~~~ 2025-09-14T10:06:12,018 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-14T10:06:12,019 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-14T10:06:12,019 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:12,020 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T10:06:12,020 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-14T10:06:12,020 | ^~~~~~~~~~~~~~~ 2025-09-14T10:06:12,021 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-14T10:06:12,021 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-14T10:06:12,021 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:12,022 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T10:06:12,022 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-14T10:06:12,022 | ^~~~~~~~~~~~~ 2025-09-14T10:06:12,023 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-14T10:06:12,023 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-14T10:06:12,024 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:12,025 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:12,025 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-14T10:06:12,025 | ^ 2025-09-14T10:06:12,026 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2025-09-14T10:06:12,026 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-14T10:06:12,026 | ^~~~~~~~~~ 2025-09-14T10:06:12,027 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-14T10:06:12,027 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-14T10:06:12,027 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:12,028 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:12,028 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-14T10:06:12,029 | ^ 2025-09-14T10:06:12,029 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2025-09-14T10:06:12,030 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-14T10:06:12,030 | ^~~~~~~~~~ 2025-09-14T10:06:12,031 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-14T10:06:12,031 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-14T10:06:12,031 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:12,332 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-14T10:06:12,334 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:12,334 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-14T10:06:12,334 | ^~ ~~~~~~~~~ 2025-09-14T10:06:12,335 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-14T10:06:12,335 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-14T10:06:12,335 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:12,336 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T10:06:12,336 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-14T10:06:12,337 | ^~~~~~~~~~~~~~~ 2025-09-14T10:06:12,338 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-14T10:06:12,338 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-14T10:06:12,338 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:12,339 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T10:06:12,339 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-14T10:06:12,339 | ^~~~~~~~~~~~~ 2025-09-14T10:06:12,340 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-14T10:06:12,341 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-14T10:06:12,341 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:12,343 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T10:06:12,343 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-14T10:06:12,343 | ^~~~~~~~~~~ 2025-09-14T10:06:12,345 command_dist.c:1022:38: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:12,345 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-14T10:06:12,345 | ^~~~~~~~~~~~~~~~~ 2025-09-14T10:06:12,346 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-14T10:06:12,346 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-14T10:06:12,346 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:12,347 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T10:06:12,347 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-14T10:06:12,348 | ^~~~~ 2025-09-14T10:06:12,349 command_dist.c:1023:32: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:12,349 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-14T10:06:12,349 | ^~~~~~~~~~~ 2025-09-14T10:06:12,350 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-14T10:06:12,350 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-14T10:06:12,350 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:12,663 command_dist.c: In function ‘combine_queries’: 2025-09-14T10:06:12,665 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T10:06:12,665 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-14T10:06:12,665 | ^ 2025-09-14T10:06:12,667 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T10:06:12,667 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-14T10:06:12,667 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:12,669 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T10:06:12,669 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-14T10:06:12,669 | ^ 2025-09-14T10:06:12,671 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T10:06:12,671 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-14T10:06:12,671 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:12,674 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:12,675 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-14T10:06:12,675 | ^~ ~~~~~~~~ 2025-09-14T10:06:12,677 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-14T10:06:12,677 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-14T10:06:12,677 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:13,216 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-313/command_dist_wrapper.o -fopenmp 2025-09-14T10:06:13,398 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_set.c -o build/temp.linux-armv7l-cpython-313/command_set.o -fopenmp 2025-09-14T10:06:13,581 command_set.c: In function ‘sketch_operate’: 2025-09-14T10:06:13,581 command_set.c:179:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-14T10:06:13,581 179 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2025-09-14T10:06:13,581 | ^ 2025-09-14T10:06:13,595 command_set.c: In function ‘combin_subset_pans’: 2025-09-14T10:06:13,595 command_set.c:458:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-14T10:06:13,595 458 | free(co_dstat_fpath); 2025-09-14T10:06:13,596 | ^~~~~~~~~~~~~~ 2025-09-14T10:06:13,596 In file included from kssdheaders/global_basic.h:159, 2025-09-14T10:06:13,596 from command_set.c:15: 2025-09-14T10:06:13,596 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-14T10:06:13,596 687 | extern void free (void *__ptr) __THROW; 2025-09-14T10:06:13,597 | ~~~~~~^~~~~ 2025-09-14T10:06:13,603 command_set.c: In function ‘grouping_genomes’: 2025-09-14T10:06:13,604 command_set.c:563:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-14T10:06:13,604 563 | free(co_dstat_fpath); 2025-09-14T10:06:13,604 | ^~~~~~~~~~~~~~ 2025-09-14T10:06:13,604 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-14T10:06:13,604 687 | extern void free (void *__ptr) __THROW; 2025-09-14T10:06:13,605 | ~~~~~~^~~~~ 2025-09-14T10:06:13,803 command_set.c: In function ‘sketch_union’: 2025-09-14T10:06:13,803 command_set.c:72:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T10:06:13,803 72 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T10:06:13,803 | ^ 2025-09-14T10:06:13,803 command_set.c:72:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T10:06:13,804 72 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T10:06:13,804 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:13,804 command_set.c:83:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:13,804 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-14T10:06:13,804 | ^~ ~~~~~~~~~~~ 2025-09-14T10:06:13,804 command_set.c:83:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:13,804 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-14T10:06:13,804 | ^~~~~~~~~~ 2025-09-14T10:06:13,804 command_set.c:83:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T10:06:13,805 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-14T10:06:13,805 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:13,805 command_set.c:93:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:13,805 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-14T10:06:13,805 | ^~ ~~~~~~~~~~ 2025-09-14T10:06:13,805 command_set.c:93:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:13,805 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-14T10:06:13,805 | ^~~~~~~~~~ 2025-09-14T10:06:13,806 command_set.c:93:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-14T10:06:13,806 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-14T10:06:13,806 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:13,955 command_set.c: In function ‘sketch_operate’: 2025-09-14T10:06:13,956 command_set.c:154:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:13,956 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-14T10:06:13,956 | ^~ ~~~~~~~~~~ 2025-09-14T10:06:13,956 command_set.c:154:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:13,956 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-14T10:06:13,956 | ^~~~~~~~~~ 2025-09-14T10:06:13,957 command_set.c:154:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-14T10:06:13,957 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-14T10:06:13,957 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:13,957 command_set.c:156:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:13,957 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-14T10:06:13,957 | ^~ ~~~~~~~~~~~~~~~ 2025-09-14T10:06:13,957 command_set.c:156:29: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:13,957 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-14T10:06:13,958 | ^~~~~~~~~~ 2025-09-14T10:06:13,958 command_set.c:156:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-14T10:06:13,958 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-14T10:06:13,958 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:13,958 command_set.c:166:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:13,958 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-14T10:06:13,958 | ^~ ~~~~~~~~~~~ 2025-09-14T10:06:13,958 command_set.c:166:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:13,958 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-14T10:06:13,959 | ^~~~~~~~~~~~~~~~ 2025-09-14T10:06:13,959 command_set.c:166:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-14T10:06:13,959 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-14T10:06:13,959 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:13,959 command_set.c:170:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:13,959 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-14T10:06:13,959 | ^~ ~~~~~~~~~~~ 2025-09-14T10:06:13,959 command_set.c:170:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:13,959 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-14T10:06:13,959 | ^~~~~~~~~~ 2025-09-14T10:06:13,960 command_set.c:170:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T10:06:13,960 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-14T10:06:13,960 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:13,960 command_set.c:175:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:13,960 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-14T10:06:13,960 | ^~ ~~~~~~~~~~~ 2025-09-14T10:06:13,960 command_set.c:175:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:13,960 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-14T10:06:13,960 | ^~~~~~~~~~ 2025-09-14T10:06:13,961 command_set.c:175:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T10:06:13,961 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-14T10:06:13,961 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:13,961 command_set.c:188:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:13,961 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-14T10:06:13,961 | ^~ ~~~~~~~~~~~ 2025-09-14T10:06:13,961 command_set.c:188:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:13,961 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-14T10:06:13,962 | ^~~~~~~~~~~~~~~~ 2025-09-14T10:06:13,962 command_set.c:188:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-14T10:06:13,962 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-14T10:06:13,962 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:13,962 command_set.c:193:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T10:06:13,962 193 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T10:06:13,962 | ^ 2025-09-14T10:06:13,962 command_set.c:193:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T10:06:13,963 193 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T10:06:13,963 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:14,156 command_set.c: In function ‘uniq_sketch_union’: 2025-09-14T10:06:14,156 command_set.c:220:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T10:06:14,156 220 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-09-14T10:06:14,156 | ^ 2025-09-14T10:06:14,156 command_set.c:220:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2025-09-14T10:06:14,157 220 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-09-14T10:06:14,157 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:14,157 command_set.c:235:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T10:06:14,157 235 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T10:06:14,157 | ^ 2025-09-14T10:06:14,157 command_set.c:235:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T10:06:14,157 235 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T10:06:14,157 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:14,158 command_set.c:248:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:14,158 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-14T10:06:14,158 | ^~ ~~~~~~~~~~~ 2025-09-14T10:06:14,158 command_set.c:248:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:14,158 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-14T10:06:14,158 | ^~~~~~~~~~ 2025-09-14T10:06:14,158 command_set.c:248:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T10:06:14,159 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-14T10:06:14,159 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:14,159 command_set.c:260:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:14,159 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-14T10:06:14,159 | ^~ ~~~~~~~~~~~~~~~ 2025-09-14T10:06:14,159 command_set.c:260:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:14,159 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-14T10:06:14,160 | ^~~~~~~~~~ 2025-09-14T10:06:14,160 command_set.c:260:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-14T10:06:14,160 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-14T10:06:14,160 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:14,318 command_set.c: In function ‘combin_pans’: 2025-09-14T10:06:14,318 command_set.c:298:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:14,318 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T10:06:14,318 | ^~ ~~~~~~~~~~~ 2025-09-14T10:06:14,319 command_set.c:298:25: note: directive argument in the range [0, 1073741823] 2025-09-14T10:06:14,319 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T10:06:14,319 | ^~~~~~~~~~ 2025-09-14T10:06:14,319 command_set.c:298:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2025-09-14T10:06:14,319 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T10:06:14,319 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:14,320 command_set.c:301:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:14,320 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T10:06:14,320 | ^~ ~~~~~~~~~~ 2025-09-14T10:06:14,320 command_set.c:301:25: note: directive argument in the range [0, 1073741823] 2025-09-14T10:06:14,320 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T10:06:14,320 | ^~~~~~~~~~ 2025-09-14T10:06:14,320 command_set.c:301:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2025-09-14T10:06:14,321 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T10:06:14,321 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:14,321 command_set.c:343:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T10:06:14,322 343 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T10:06:14,322 | ^ 2025-09-14T10:06:14,322 command_set.c:343:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T10:06:14,322 343 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T10:06:14,322 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:14,539 command_set.c: In function ‘combin_subset_pans’: 2025-09-14T10:06:14,540 command_set.c:470:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:14,540 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-14T10:06:14,540 | ^~ ~~~~~~~~~~~ 2025-09-14T10:06:14,541 command_set.c:470:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:14,541 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-14T10:06:14,541 | ^~~~~~~~~~ 2025-09-14T10:06:14,541 command_set.c:470:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T10:06:14,542 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-14T10:06:14,542 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:14,542 command_set.c:476:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:14,543 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-14T10:06:14,543 | ^~ ~~~~~~~~~~ 2025-09-14T10:06:14,543 command_set.c:476:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:14,543 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-14T10:06:14,543 | ^~~~~~~~~~ 2025-09-14T10:06:14,544 command_set.c:476:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-14T10:06:14,544 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-14T10:06:14,544 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:14,545 command_set.c:482:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:14,545 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T10:06:14,545 | ^~ ~~~~~~~~~~~ 2025-09-14T10:06:14,545 command_set.c:482:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:14,545 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T10:06:14,545 | ^~~~~~~~~~ 2025-09-14T10:06:14,546 command_set.c:482:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T10:06:14,546 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T10:06:14,546 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:14,547 command_set.c:513:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:14,547 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T10:06:14,547 | ^~ ~~~~~~~~~~ 2025-09-14T10:06:14,548 command_set.c:513:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:14,548 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T10:06:14,548 | ^~~~~~~~~~ 2025-09-14T10:06:14,548 command_set.c:513:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-14T10:06:14,549 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T10:06:14,549 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:14,549 command_set.c:524:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T10:06:14,549 524 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T10:06:14,550 | ^ 2025-09-14T10:06:14,550 command_set.c:524:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T10:06:14,550 524 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T10:06:14,550 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:14,788 command_set.c: In function ‘grouping_genomes’: 2025-09-14T10:06:14,789 command_set.c:575:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:14,789 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-14T10:06:14,789 | ^~ ~~~~~~~~~~~ 2025-09-14T10:06:14,790 command_set.c:575:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:14,790 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-14T10:06:14,790 | ^~~~~~~~~~ 2025-09-14T10:06:14,790 command_set.c:575:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T10:06:14,791 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-14T10:06:14,791 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:14,792 command_set.c:581:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:14,792 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-14T10:06:14,792 | ^~ ~~~~~~~~~~ 2025-09-14T10:06:14,792 command_set.c:581:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:14,793 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-14T10:06:14,793 | ^~~~~~~~~~ 2025-09-14T10:06:14,793 command_set.c:581:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-14T10:06:14,793 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-14T10:06:14,793 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:14,795 command_set.c:613:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:14,795 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T10:06:14,795 | ^~ ~~~~~~~~~~~ 2025-09-14T10:06:14,795 command_set.c:613:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:14,796 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T10:06:14,796 | ^~~~~~~~~~ 2025-09-14T10:06:14,796 command_set.c:613:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T10:06:14,796 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T10:06:14,797 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:14,798 command_set.c:635:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T10:06:14,798 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T10:06:14,798 | ^~ ~~~~~~~~~~ 2025-09-14T10:06:14,799 command_set.c:635:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T10:06:14,799 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T10:06:14,799 | ^~~~~~~~~~ 2025-09-14T10:06:14,799 command_set.c:635:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-14T10:06:14,800 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T10:06:14,800 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:14,800 command_set.c:646:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T10:06:14,801 646 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T10:06:14,801 | ^ 2025-09-14T10:06:14,801 command_set.c:646:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T10:06:14,801 646 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T10:06:14,802 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T10:06:15,102 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-313/command_shuffle.o -fopenmp 2025-09-14T10:06:15,510 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c global_basic.c -o build/temp.linux-armv7l-cpython-313/global_basic.o -fopenmp 2025-09-14T10:06:15,688 global_basic.c: In function ‘organize_infile_list’: 2025-09-14T10:06:15,688 global_basic.c:195:20: error: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2025-09-14T10:06:15,689 195 | while (isspace(*buf)) buf++; 2025-09-14T10:06:15,689 | ^~~~~~~ 2025-09-14T10:06:15,689 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2025-09-14T10:06:15,689 34 | #include 2025-09-14T10:06:15,689 +++ |+#include 2025-09-14T10:06:15,689 35 | 2025-09-14T10:06:15,689 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T10:06:15,690 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-14T10:06:15,690 | ~~^ 2025-09-14T10:06:15,690 | | 2025-09-14T10:06:15,690 | long unsigned int 2025-09-14T10:06:15,690 | %u 2025-09-14T10:06:15,690 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-14T10:06:15,690 | ~~~~~~~~~~~ 2025-09-14T10:06:15,690 | | 2025-09-14T10:06:15,691 | size_t {aka unsigned int} 2025-09-14T10:06:15,691 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T10:06:15,691 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-14T10:06:15,692 | ~~^ 2025-09-14T10:06:15,692 | | 2025-09-14T10:06:15,692 | long unsigned int 2025-09-14T10:06:15,692 | %u 2025-09-14T10:06:15,692 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-14T10:06:15,692 | ~~~~~~~~~~~ 2025-09-14T10:06:15,692 | | 2025-09-14T10:06:15,692 | size_t {aka unsigned int} 2025-09-14T10:06:15,713 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-14T10:06:15,878 ERROR: python setup.py bdist_wheel exited with 1 2025-09-14T10:06:15,892 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-14T10:06:15,892 exec(compile('"'"''"'"''"'"' 2025-09-14T10:06:15,892 # This is -- a caller that pip uses to run setup.py 2025-09-14T10:06:15,892 # 2025-09-14T10:06:15,892 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-14T10:06:15,892 # import from `distutils.core` to work with newer packaging standards. 2025-09-14T10:06:15,892 # - It provides a clear error message when setuptools is not installed. 2025-09-14T10:06:15,892 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-14T10:06:15,892 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-14T10:06:15,892 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-14T10:06:15,892 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-14T10:06:15,892 import os, sys, tokenize, traceback 2025-09-14T10:06:15,892 2025-09-14T10:06:15,892 try: 2025-09-14T10:06:15,892 import setuptools 2025-09-14T10:06:15,892 except ImportError: 2025-09-14T10:06:15,892 print( 2025-09-14T10:06:15,892 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-14T10:06:15,892 "the build environment with exception:", 2025-09-14T10:06:15,892 file=sys.stderr, 2025-09-14T10:06:15,892 ) 2025-09-14T10:06:15,892 traceback.print_exc() 2025-09-14T10:06:15,892 sys.exit(1) 2025-09-14T10:06:15,892 2025-09-14T10:06:15,892 __file__ = %r 2025-09-14T10:06:15,892 sys.argv[0] = __file__ 2025-09-14T10:06:15,892 2025-09-14T10:06:15,892 if os.path.exists(__file__): 2025-09-14T10:06:15,892 filename = __file__ 2025-09-14T10:06:15,892 with tokenize.open(__file__) as f: 2025-09-14T10:06:15,892 setup_py_code = f.read() 2025-09-14T10:06:15,892 else: 2025-09-14T10:06:15,892 filename = "" 2025-09-14T10:06:15,892 setup_py_code = "from setuptools import setup; setup()" 2025-09-14T10:06:15,892 2025-09-14T10:06:15,892 exec(compile(setup_py_code, filename, "exec")) 2025-09-14T10:06:15,892 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-23_rla6n/kssdtree_8e57124864004a77a53e8750e95cb79f/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-mzfn9t99[/] 2025-09-14T10:06:15,892 [bold magenta]cwd[/]: /tmp/pip-wheel-23_rla6n/kssdtree_8e57124864004a77a53e8750e95cb79f/ 2025-09-14T10:06:15,892 Building wheel for kssdtree (setup.py): finished with status 'error' 2025-09-14T10:06:15,893 ERROR: Failed building wheel for kssdtree 2025-09-14T10:06:15,894 Running setup.py clean for kssdtree 2025-09-14T10:06:15,895 Running command python setup.py clean 2025-09-14T10:06:17,193 running clean 2025-09-14T10:06:17,367 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-14T10:06:17,367 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-14T10:06:17,368 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-14T10:06:17,368 'build/scripts-3.13' does not exist -- can't clean it 2025-09-14T10:06:17,368 removing 'build' 2025-09-14T10:06:17,497 Failed to build kssdtree 2025-09-14T10:06:17,498 ERROR: Failed to build one or more wheels 2025-09-14T10:06:17,499 Exception information: 2025-09-14T10:06:17,499 Traceback (most recent call last): 2025-09-14T10:06:17,499 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-14T10:06:17,499 status = _inner_run() 2025-09-14T10:06:17,499 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-14T10:06:17,499 return self.run(options, args) 2025-09-14T10:06:17,499 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-14T10:06:17,499 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-14T10:06:17,499 return func(self, options, args) 2025-09-14T10:06:17,499 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-14T10:06:17,499 raise CommandError("Failed to build one or more wheels") 2025-09-14T10:06:17,499 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-14T10:06:17,504 Removed build tracker: '/tmp/pip-build-tracker-9r4qvwuo'