2025-09-14T22:41:31,714 Created temporary directory: /tmp/pip-build-tracker-t09spzv1 2025-09-14T22:41:31,715 Initialized build tracking at /tmp/pip-build-tracker-t09spzv1 2025-09-14T22:41:31,715 Created build tracker: /tmp/pip-build-tracker-t09spzv1 2025-09-14T22:41:31,715 Entered build tracker: /tmp/pip-build-tracker-t09spzv1 2025-09-14T22:41:31,715 Created temporary directory: /tmp/pip-wheel-qoj0m6ou 2025-09-14T22:41:31,719 Created temporary directory: /tmp/pip-ephem-wheel-cache-qc6w5jl7 2025-09-14T22:41:31,777 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-14T22:41:31,780 2 location(s) to search for versions of kssdtree: 2025-09-14T22:41:31,780 * https://pypi.org/simple/kssdtree/ 2025-09-14T22:41:31,780 * https://www.piwheels.org/simple/kssdtree/ 2025-09-14T22:41:31,780 Fetching project page and analyzing links: https://pypi.org/simple/kssdtree/ 2025-09-14T22:41:31,781 Getting page https://pypi.org/simple/kssdtree/ 2025-09-14T22:41:31,782 Found index url https://pypi.org/simple/ 2025-09-14T22:41:31,997 Fetched page https://pypi.org/simple/kssdtree/ as application/vnd.pypi.simple.v1+json 2025-09-14T22:41:31,999 Found link https://files.pythonhosted.org/packages/d5/1e/9e5c5945a44bb40002d1c259f734a531999fa6e87db89fe7c7ddcfc583cc/kssdtree-1.1.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.1 2025-09-14T22:41:31,999 Found link https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.2 2025-09-14T22:41:32,000 Found link https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.3 2025-09-14T22:41:32,000 Found link https://files.pythonhosted.org/packages/20/ea/b0301924e3f7d367cbb7b8da66837dba9af2a332bf56ed35e03a33faee76/kssdtree-1.1.4.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.4 2025-09-14T22:41:32,000 Found link https://files.pythonhosted.org/packages/41/65/ed35110b84bc0dd02b9add0104f10160754d2ea0882191767d512146a884/kssdtree-1.1.6.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.6 2025-09-14T22:41:32,000 Found link https://files.pythonhosted.org/packages/cd/4b/d886cbcc573ff0969da7d9c756049925b86141e60ee6708dfbbe0644d008/kssdtree-1.1.7.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.7 2025-09-14T22:41:32,001 Found link https://files.pythonhosted.org/packages/7e/8a/a62c8adc92df69ab8cb242827ee64a3e2b6d5c89b83425785dd00605af17/kssdtree-1.1.8.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.8 2025-09-14T22:41:32,001 Found link https://files.pythonhosted.org/packages/da/db/e458cca6427752c05428d2378ccdee631d32f760174fdaba65f73125e71b/kssdtree-1.1.9.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.9 2025-09-14T22:41:32,001 Found link https://files.pythonhosted.org/packages/9d/47/017180a30e73e421372377cbe6d01c5e51a5108ea2177f20ccd7d283f8d1/kssdtree-2.0.0.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.0 2025-09-14T22:41:32,001 Found link https://files.pythonhosted.org/packages/ba/39/d443cac955912a0371c93b797311cb9ec3a8d6ee0a5d7673376d826aa6b2/kssdtree-2.0.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.1 2025-09-14T22:41:32,002 Found link https://files.pythonhosted.org/packages/2e/32/e53c0e3735cbc913b2c96b4e0e1c1005fe816a4d71b38b80cdcfb5c67fa8/kssdtree-2.0.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.2 2025-09-14T22:41:32,002 Found link https://files.pythonhosted.org/packages/c0/0f/effc10c8e76dbe3b9a35a4b4d9e65a0a889ee805e10334541c3ca7ae3b94/kssdtree-2.0.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.3 2025-09-14T22:41:32,002 Found link https://files.pythonhosted.org/packages/fc/8d/d3790baa2f2f0a01c913005b94a82dc13ef601e7015e662ccff94bb1b458/kssdtree-2.0.4.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.4 2025-09-14T22:41:32,002 Found link https://files.pythonhosted.org/packages/b5/f8/19480a4c57704944f973ebf534f9582054949cca20170a33c6f874974440/kssdtree-2.0.5.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.5 2025-09-14T22:41:32,003 Found link https://files.pythonhosted.org/packages/46/ef/2d920d5d2fceded48c7add363e04f49ae85414bcd4360e1295d6fddc4a24/kssdtree-2.0.6.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.6 2025-09-14T22:41:32,003 Found link https://files.pythonhosted.org/packages/9c/1c/c6b3f05465d145856ac992328bd59e776286a59b120254620c1dbffcf67f/kssdtree-2.0.7.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.7 2025-09-14T22:41:32,003 Found link https://files.pythonhosted.org/packages/82/9b/dac2af6572f0c4421e5ba8341dcfddac466de30c62acfa019d9ef70b2670/kssdtree-2.0.8.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.8 2025-09-14T22:41:32,004 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdtree/ 2025-09-14T22:41:32,004 Getting page https://www.piwheels.org/simple/kssdtree/ 2025-09-14T22:41:32,005 Found index url https://www.piwheels.org/simple/ 2025-09-14T22:41:32,094 Fetched page https://www.piwheels.org/simple/kssdtree/ as text/html 2025-09-14T22:41:32,106 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv6l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,107 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp311-cp311-linux_armv7l.whl#sha256=ae7417e30efd12d8c6800d4167141c94a93f1ce51afd5ae9196cdfb6057ca7d2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,109 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv6l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,110 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv7l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,110 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.1-cp311-cp311-linux_armv6l.whl#sha256=8b8c3190a5a4a010758772e9d53c3c12436541437bc9c503bec9a8f6a007cdcc (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,110 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.1-cp311-cp311-linux_armv7l.whl#sha256=8b8c3190a5a4a010758772e9d53c3c12436541437bc9c503bec9a8f6a007cdcc (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,110 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.0-cp311-cp311-linux_armv6l.whl#sha256=16a2e46376ed2874435371fd57a97405d4b631b35c014b9e395a4528a1e655b8 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,110 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv6l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,111 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv7l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,112 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp311-cp311-linux_armv6l.whl#sha256=388a8dabd657ea83e6d22b52300337c74e9d84e506806cfd4d2a76eb98777e17 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,112 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv6l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,112 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv7l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,112 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv6l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,112 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv7l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,113 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv6l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,113 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv7l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,113 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,113 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,113 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,113 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,113 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,114 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,114 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv6l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,114 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv7l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,114 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,114 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,114 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,114 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,115 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,115 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,115 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,115 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,115 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv6l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,115 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv7l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,115 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,116 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,116 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,116 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-14T22:41:32,116 Skipping link: not a file: https://www.piwheels.org/simple/kssdtree/ 2025-09-14T22:41:32,116 Skipping link: not a file: https://pypi.org/simple/kssdtree/ 2025-09-14T22:41:32,141 Given no hashes to check 1 links for project 'kssdtree': discarding no candidates 2025-09-14T22:41:32,143 Collecting kssdtree==2.0.3 2025-09-14T22:41:32,144 Created temporary directory: /tmp/pip-unpack-3nj19jgs 2025-09-14T22:41:32,282 Downloading kssdtree-2.0.3.tar.gz (112 kB) 2025-09-14T22:41:32,382 Added kssdtree==2.0.3 from https://files.pythonhosted.org/packages/c0/0f/effc10c8e76dbe3b9a35a4b4d9e65a0a889ee805e10334541c3ca7ae3b94/kssdtree-2.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-t09spzv1' 2025-09-14T22:41:32,383 Running setup.py (path:/tmp/pip-wheel-qoj0m6ou/kssdtree_ebc52a8b8af14862bb5f25a743f10400/setup.py) egg_info for package kssdtree 2025-09-14T22:41:32,383 Created temporary directory: /tmp/pip-pip-egg-info-cg2ujze2 2025-09-14T22:41:32,384 Preparing metadata (setup.py): started 2025-09-14T22:41:32,384 Running command python setup.py egg_info 2025-09-14T22:41:33,645 running egg_info 2025-09-14T22:41:33,733 creating /tmp/pip-pip-egg-info-cg2ujze2/kssdtree.egg-info 2025-09-14T22:41:33,733 writing /tmp/pip-pip-egg-info-cg2ujze2/kssdtree.egg-info/PKG-INFO 2025-09-14T22:41:33,735 writing dependency_links to /tmp/pip-pip-egg-info-cg2ujze2/kssdtree.egg-info/dependency_links.txt 2025-09-14T22:41:33,736 writing requirements to /tmp/pip-pip-egg-info-cg2ujze2/kssdtree.egg-info/requires.txt 2025-09-14T22:41:33,736 writing top-level names to /tmp/pip-pip-egg-info-cg2ujze2/kssdtree.egg-info/top_level.txt 2025-09-14T22:41:33,737 writing manifest file '/tmp/pip-pip-egg-info-cg2ujze2/kssdtree.egg-info/SOURCES.txt' 2025-09-14T22:41:34,091 reading manifest file '/tmp/pip-pip-egg-info-cg2ujze2/kssdtree.egg-info/SOURCES.txt' 2025-09-14T22:41:34,092 reading manifest template 'MANIFEST.in' 2025-09-14T22:41:34,099 writing manifest file '/tmp/pip-pip-egg-info-cg2ujze2/kssdtree.egg-info/SOURCES.txt' 2025-09-14T22:41:34,229 Preparing metadata (setup.py): finished with status 'done' 2025-09-14T22:41:34,234 Source in /tmp/pip-wheel-qoj0m6ou/kssdtree_ebc52a8b8af14862bb5f25a743f10400 has version 2.0.3, which satisfies requirement kssdtree==2.0.3 from https://files.pythonhosted.org/packages/c0/0f/effc10c8e76dbe3b9a35a4b4d9e65a0a889ee805e10334541c3ca7ae3b94/kssdtree-2.0.3.tar.gz 2025-09-14T22:41:34,234 Removed kssdtree==2.0.3 from https://files.pythonhosted.org/packages/c0/0f/effc10c8e76dbe3b9a35a4b4d9e65a0a889ee805e10334541c3ca7ae3b94/kssdtree-2.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-t09spzv1' 2025-09-14T22:41:34,238 Created temporary directory: /tmp/pip-unpack-fbdwetnb 2025-09-14T22:41:34,238 Created temporary directory: /tmp/pip-unpack-saf1amxc 2025-09-14T22:41:34,238 Building wheels for collected packages: kssdtree 2025-09-14T22:41:34,240 Created temporary directory: /tmp/pip-wheel-90xk_mka 2025-09-14T22:41:34,240 DEPRECATION: Building 'kssdtree' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'kssdtree'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-14T22:41:34,242 Building wheel for kssdtree (setup.py): started 2025-09-14T22:41:34,242 Destination directory: /tmp/pip-wheel-90xk_mka 2025-09-14T22:41:34,243 Running command python setup.py bdist_wheel 2025-09-14T22:41:35,412 running bdist_wheel 2025-09-14T22:41:35,840 running build 2025-09-14T22:41:35,841 running build_py 2025-09-14T22:41:35,929 creating build/lib.linux-armv7l-cpython-313 2025-09-14T22:41:35,930 copying kssdtree.py -> build/lib.linux-armv7l-cpython-313 2025-09-14T22:41:35,931 copying toolutils.py -> build/lib.linux-armv7l-cpython-313 2025-09-14T22:41:35,931 running egg_info 2025-09-14T22:41:36,018 writing kssdtree.egg-info/PKG-INFO 2025-09-14T22:41:36,019 writing dependency_links to kssdtree.egg-info/dependency_links.txt 2025-09-14T22:41:36,020 writing requirements to kssdtree.egg-info/requires.txt 2025-09-14T22:41:36,020 writing top-level names to kssdtree.egg-info/top_level.txt 2025-09-14T22:41:36,109 reading manifest file 'kssdtree.egg-info/SOURCES.txt' 2025-09-14T22:41:36,114 reading manifest template 'MANIFEST.in' 2025-09-14T22:41:36,122 writing manifest file 'kssdtree.egg-info/SOURCES.txt' 2025-09-14T22:41:36,123 running build_ext 2025-09-14T22:41:36,474 building 'kssd' extension 2025-09-14T22:41:36,476 creating build/temp.linux-armv7l-cpython-313 2025-09-14T22:41:36,477 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c co2mco.c -o build/temp.linux-armv7l-cpython-313/co2mco.o -fopenmp 2025-09-14T22:41:36,658 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2025-09-14T22:41:36,658 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-14T22:41:36,658 109 | for (unsigned int i = 0; i < comp_num; i++) { 2025-09-14T22:41:36,658 | ^ 2025-09-14T22:41:36,662 co2mco.c: In function ‘co2unitllmco’: 2025-09-14T22:41:36,662 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-14T22:41:36,662 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2025-09-14T22:41:36,662 | ^ 2025-09-14T22:41:37,426 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_composite.c -o build/temp.linux-armv7l-cpython-313/command_composite.o -fopenmp 2025-09-14T22:41:37,843 command_composite.c: In function ‘get_species_abundance’: 2025-09-14T22:41:37,843 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-14T22:41:37,843 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2025-09-14T22:41:37,843 | ^~ 2025-09-14T22:41:37,843 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-14T22:41:37,843 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2025-09-14T22:41:37,844 | ^~ 2025-09-14T22:41:37,844 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:37,844 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-14T22:41:37,844 | ^ 2025-09-14T22:41:37,844 command_composite.c:64:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:37,844 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-14T22:41:37,844 | ^~~~~~~~~~ 2025-09-14T22:41:37,844 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-14T22:41:37,845 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-14T22:41:37,845 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:37,845 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:37,845 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-14T22:41:37,845 | ^ 2025-09-14T22:41:37,845 command_composite.c:70:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:37,845 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-14T22:41:37,845 | ^~~~~~~~~~ 2025-09-14T22:41:37,846 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-14T22:41:37,846 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-14T22:41:37,846 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:37,846 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:37,846 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-14T22:41:37,846 | ^ 2025-09-14T22:41:37,846 command_composite.c:76:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:37,847 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-14T22:41:37,847 | ^~~~~~~~~~ 2025-09-14T22:41:37,847 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-14T22:41:37,847 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-14T22:41:37,847 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:37,847 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:37,847 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-14T22:41:37,847 | ^ 2025-09-14T22:41:37,848 command_composite.c:82:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:37,848 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-14T22:41:37,848 | ^~~~~~~~~~ 2025-09-14T22:41:37,848 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-14T22:41:37,848 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-14T22:41:37,848 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:37,848 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:37,848 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-14T22:41:37,848 | ^ 2025-09-14T22:41:37,849 command_composite.c:88:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:37,849 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-14T22:41:37,849 | ^~~~~~~~~~~~ 2025-09-14T22:41:37,849 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2025-09-14T22:41:37,849 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-14T22:41:37,849 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:38,122 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist.c -o build/temp.linux-armv7l-cpython-313/command_dist.o -fopenmp 2025-09-14T22:41:38,362 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-14T22:41:38,364 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T22:41:38,364 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-14T22:41:38,364 | ~~^ 2025-09-14T22:41:38,365 | | 2025-09-14T22:41:38,365 | long unsigned int 2025-09-14T22:41:38,365 | %u 2025-09-14T22:41:38,365 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-14T22:41:38,365 | ~~~~~~~ 2025-09-14T22:41:38,365 | | 2025-09-14T22:41:38,365 | size_t {aka unsigned int} 2025-09-14T22:41:38,366 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T22:41:38,366 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-14T22:41:38,366 | ~~^ 2025-09-14T22:41:38,366 | | 2025-09-14T22:41:38,367 | long unsigned int 2025-09-14T22:41:38,367 | %u 2025-09-14T22:41:38,367 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-14T22:41:38,367 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-14T22:41:38,367 | ~~~~~~~~~ 2025-09-14T22:41:38,367 | | 2025-09-14T22:41:38,367 | size_t {aka unsigned int} 2025-09-14T22:41:38,368 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-14T22:41:38,368 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-14T22:41:38,368 | ~~^ 2025-09-14T22:41:38,368 | | 2025-09-14T22:41:38,369 | long unsigned int 2025-09-14T22:41:38,369 | %u 2025-09-14T22:41:38,369 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-14T22:41:38,369 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-14T22:41:38,369 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:38,369 | | 2025-09-14T22:41:38,369 | unsigned int 2025-09-14T22:41:38,372 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-14T22:41:38,372 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2025-09-14T22:41:38,372 | ^ 2025-09-14T22:41:38,380 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-14T22:41:38,382 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T22:41:38,382 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-14T22:41:38,382 | ~~^ ~~~~~~~ 2025-09-14T22:41:38,383 | | | 2025-09-14T22:41:38,383 | long unsigned int size_t {aka unsigned int} 2025-09-14T22:41:38,383 | %u 2025-09-14T22:41:38,385 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T22:41:38,385 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-14T22:41:38,385 | ~~^ 2025-09-14T22:41:38,385 | | 2025-09-14T22:41:38,385 | long unsigned int 2025-09-14T22:41:38,385 | %u 2025-09-14T22:41:38,385 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-14T22:41:38,385 | ~~~~~~~~~ 2025-09-14T22:41:38,386 | | 2025-09-14T22:41:38,386 | size_t {aka unsigned int} 2025-09-14T22:41:38,387 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-14T22:41:38,387 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-14T22:41:38,388 | ~~^ 2025-09-14T22:41:38,388 | | 2025-09-14T22:41:38,388 | long unsigned int 2025-09-14T22:41:38,388 | %u 2025-09-14T22:41:38,388 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-14T22:41:38,388 865 | (size_t) b * unitsz_distf_mapped); 2025-09-14T22:41:38,388 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:38,388 | | 2025-09-14T22:41:38,388 | unsigned int 2025-09-14T22:41:38,390 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2025-09-14T22:41:38,390 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2025-09-14T22:41:38,391 | ^~~~~~~ 2025-09-14T22:41:38,391 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2025-09-14T22:41:38,391 809 | struct stat cbd_fcode_stat; 2025-09-14T22:41:38,392 | ^~~~~~~~~~~~~~ 2025-09-14T22:41:38,392 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2025-09-14T22:41:38,392 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-14T22:41:38,393 | ^~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:38,393 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2025-09-14T22:41:38,394 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-14T22:41:38,394 | ^~~~~~~~~~~~~~~~~ 2025-09-14T22:41:38,401 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-14T22:41:38,403 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T22:41:38,404 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-14T22:41:38,404 | ~~^ 2025-09-14T22:41:38,404 | | 2025-09-14T22:41:38,404 | long unsigned int 2025-09-14T22:41:38,404 | %u 2025-09-14T22:41:38,404 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-14T22:41:38,404 | ~~~~~~~ 2025-09-14T22:41:38,404 | | 2025-09-14T22:41:38,404 | size_t {aka unsigned int} 2025-09-14T22:41:38,406 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T22:41:38,407 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-14T22:41:38,407 | ~~^ 2025-09-14T22:41:38,407 | | 2025-09-14T22:41:38,407 | long unsigned int 2025-09-14T22:41:38,407 | %u 2025-09-14T22:41:38,407 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-14T22:41:38,407 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-14T22:41:38,407 | ~~~~~~~~~ 2025-09-14T22:41:38,407 | | 2025-09-14T22:41:38,408 | size_t {aka unsigned int} 2025-09-14T22:41:38,409 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-14T22:41:38,410 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-14T22:41:38,410 | ~~^ 2025-09-14T22:41:38,410 | | 2025-09-14T22:41:38,410 | long unsigned int 2025-09-14T22:41:38,410 | %u 2025-09-14T22:41:38,410 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-14T22:41:38,410 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-14T22:41:38,410 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:38,410 | | 2025-09-14T22:41:38,410 | unsigned int 2025-09-14T22:41:38,416 command_dist.c: In function ‘mco_co_dist_core’: 2025-09-14T22:41:38,417 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-14T22:41:38,417 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2025-09-14T22:41:38,417 | ^ 2025-09-14T22:41:38,419 command_dist.c: In function ‘fname_dist_print’: 2025-09-14T22:41:38,420 command_dist.c:1163:25: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘__off64_t’ {aka ‘long long int’} [-Wsign-compare] 2025-09-14T22:41:38,420 1163 | for (llong i = 0; i < s.st_size / sizeof(ctx_obj_ct_t); i++) { 2025-09-14T22:41:38,420 | ^ 2025-09-14T22:41:38,426 command_dist.c: In function ‘koc_dist_print_nobin’: 2025-09-14T22:41:38,427 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-14T22:41:38,427 1239 | for (int rid = 0; rid < ref_num; rid++) 2025-09-14T22:41:38,428 | ^ 2025-09-14T22:41:38,430 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-14T22:41:38,430 1245 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-14T22:41:38,430 | ^ 2025-09-14T22:41:38,436 command_dist.c: In function ‘dist_print_nobin’: 2025-09-14T22:41:38,438 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-14T22:41:38,438 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2025-09-14T22:41:38,438 | ^ 2025-09-14T22:41:38,441 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-14T22:41:38,442 1356 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-14T22:41:38,442 | ^ 2025-09-14T22:41:38,444 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-14T22:41:38,444 1382 | for (int rid = 0; rid < ref_num; rid++) 2025-09-14T22:41:38,444 | ^ 2025-09-14T22:41:38,887 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2025-09-14T22:41:38,888 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2025-09-14T22:41:38,888 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2025-09-14T22:41:38,888 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:38,888 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2025-09-14T22:41:38,888 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2025-09-14T22:41:38,888 | ^~~~~~~~~~~~ 2025-09-14T22:41:39,794 command_dist.c: In function ‘get_dim_shuffle’: 2025-09-14T22:41:39,794 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2025-09-14T22:41:39,795 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-14T22:41:39,795 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:39,795 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2025-09-14T22:41:39,795 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-14T22:41:39,795 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:40,830 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-14T22:41:40,831 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:40,831 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-14T22:41:40,831 | ^~ ~~~~~~~~~ 2025-09-14T22:41:40,832 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-14T22:41:40,832 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-14T22:41:40,832 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:40,833 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T22:41:40,833 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-14T22:41:40,833 | ^~~~~~~~~~~~~~~ 2025-09-14T22:41:40,833 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-14T22:41:40,834 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-14T22:41:40,834 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:40,836 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T22:41:40,836 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-14T22:41:40,836 | ^~~~~~~~~~~ 2025-09-14T22:41:40,837 command_dist.c:681:38: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:40,837 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-14T22:41:40,837 | ^~~~~~~~~~~~~~~~~ 2025-09-14T22:41:40,838 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-14T22:41:40,838 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-14T22:41:40,838 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:40,839 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T22:41:40,839 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-14T22:41:40,839 | ^~~~~ 2025-09-14T22:41:40,840 command_dist.c:682:32: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:40,840 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-14T22:41:40,840 | ^~~~~~~~~~~ 2025-09-14T22:41:40,841 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-14T22:41:40,841 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-14T22:41:40,841 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:41,120 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-14T22:41:41,122 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:41,122 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-14T22:41:41,122 | ^~ ~~~~~~~~~ 2025-09-14T22:41:41,123 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-14T22:41:41,123 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-14T22:41:41,123 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:41,124 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T22:41:41,124 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-14T22:41:41,124 | ^~~~~~~~~~~~~~~ 2025-09-14T22:41:41,125 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-14T22:41:41,125 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-14T22:41:41,125 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:41,126 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T22:41:41,126 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-14T22:41:41,127 | ^~~~~~~~~~~~~ 2025-09-14T22:41:41,127 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-14T22:41:41,128 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-14T22:41:41,128 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:41,129 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:41,129 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-14T22:41:41,129 | ^ 2025-09-14T22:41:41,130 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2025-09-14T22:41:41,130 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-14T22:41:41,130 | ^~~~~~~~~~ 2025-09-14T22:41:41,131 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-14T22:41:41,131 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-14T22:41:41,132 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:41,132 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:41,133 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-14T22:41:41,133 | ^ 2025-09-14T22:41:41,134 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2025-09-14T22:41:41,134 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-14T22:41:41,134 | ^~~~~~~~~~ 2025-09-14T22:41:41,135 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-14T22:41:41,135 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-14T22:41:41,135 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:41,435 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-14T22:41:41,437 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:41,437 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-14T22:41:41,437 | ^~ ~~~~~~~~~ 2025-09-14T22:41:41,438 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-14T22:41:41,438 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-14T22:41:41,438 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:41,440 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T22:41:41,440 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-14T22:41:41,440 | ^~~~~~~~~~~~~~~ 2025-09-14T22:41:41,441 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-14T22:41:41,441 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-14T22:41:41,441 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:41,442 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T22:41:41,443 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-14T22:41:41,443 | ^~~~~~~~~~~~~ 2025-09-14T22:41:41,444 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-14T22:41:41,444 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-14T22:41:41,444 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:41,446 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T22:41:41,446 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-14T22:41:41,447 | ^~~~~~~~~~~ 2025-09-14T22:41:41,448 command_dist.c:1022:38: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:41,448 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-14T22:41:41,448 | ^~~~~~~~~~~~~~~~~ 2025-09-14T22:41:41,449 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-14T22:41:41,449 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-14T22:41:41,449 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:41,451 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-14T22:41:41,451 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-14T22:41:41,451 | ^~~~~ 2025-09-14T22:41:41,452 command_dist.c:1023:32: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:41,452 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-14T22:41:41,452 | ^~~~~~~~~~~ 2025-09-14T22:41:41,453 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-14T22:41:41,453 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-14T22:41:41,454 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:41,765 command_dist.c: In function ‘combine_queries’: 2025-09-14T22:41:41,767 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T22:41:41,768 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-14T22:41:41,768 | ^ 2025-09-14T22:41:41,769 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T22:41:41,770 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-14T22:41:41,770 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:41,771 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T22:41:41,772 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-14T22:41:41,772 | ^ 2025-09-14T22:41:41,773 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T22:41:41,774 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-14T22:41:41,774 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:41,777 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:41,777 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-14T22:41:41,777 | ^~ ~~~~~~~~ 2025-09-14T22:41:41,779 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-14T22:41:41,779 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-14T22:41:41,779 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:42,317 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-313/command_dist_wrapper.o -fopenmp 2025-09-14T22:41:42,495 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_set.c -o build/temp.linux-armv7l-cpython-313/command_set.o -fopenmp 2025-09-14T22:41:42,667 command_set.c: In function ‘sketch_operate’: 2025-09-14T22:41:42,667 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-14T22:41:42,667 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2025-09-14T22:41:42,667 | ^ 2025-09-14T22:41:42,681 command_set.c: In function ‘combin_subset_pans’: 2025-09-14T22:41:42,681 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-14T22:41:42,681 457 | free(co_dstat_fpath); 2025-09-14T22:41:42,682 | ^~~~~~~~~~~~~~ 2025-09-14T22:41:42,682 In file included from kssdheaders/global_basic.h:159, 2025-09-14T22:41:42,682 from command_set.c:15: 2025-09-14T22:41:42,682 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-14T22:41:42,683 687 | extern void free (void *__ptr) __THROW; 2025-09-14T22:41:42,683 | ~~~~~~^~~~~ 2025-09-14T22:41:42,690 command_set.c: In function ‘grouping_genomes’: 2025-09-14T22:41:42,690 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-14T22:41:42,691 562 | free(co_dstat_fpath); 2025-09-14T22:41:42,691 | ^~~~~~~~~~~~~~ 2025-09-14T22:41:42,691 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-14T22:41:42,691 687 | extern void free (void *__ptr) __THROW; 2025-09-14T22:41:42,691 | ~~~~~~^~~~~ 2025-09-14T22:41:42,889 command_set.c: In function ‘sketch_union’: 2025-09-14T22:41:42,889 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T22:41:42,889 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T22:41:42,889 | ^ 2025-09-14T22:41:42,890 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T22:41:42,890 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T22:41:42,890 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:42,890 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:42,890 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-14T22:41:42,890 | ^~ ~~~~~~~~~~~ 2025-09-14T22:41:42,890 command_set.c:82:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:42,890 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-14T22:41:42,891 | ^~~~~~~~~~ 2025-09-14T22:41:42,891 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T22:41:42,891 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-14T22:41:42,891 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:42,891 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:42,891 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-14T22:41:42,891 | ^~ ~~~~~~~~~~ 2025-09-14T22:41:42,891 command_set.c:92:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:42,892 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-14T22:41:42,892 | ^~~~~~~~~~ 2025-09-14T22:41:42,892 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-14T22:41:42,892 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-14T22:41:42,892 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,039 command_set.c: In function ‘sketch_operate’: 2025-09-14T22:41:43,040 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:43,040 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-14T22:41:43,040 | ^~ ~~~~~~~~~~ 2025-09-14T22:41:43,040 command_set.c:153:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:43,040 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-14T22:41:43,040 | ^~~~~~~~~~ 2025-09-14T22:41:43,040 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-14T22:41:43,040 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-14T22:41:43,041 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,041 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:43,041 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-14T22:41:43,041 | ^~ ~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,041 command_set.c:155:29: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:43,041 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-14T22:41:43,041 | ^~~~~~~~~~ 2025-09-14T22:41:43,041 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-14T22:41:43,041 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-14T22:41:43,042 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,042 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:43,042 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-14T22:41:43,042 | ^~ ~~~~~~~~~~~ 2025-09-14T22:41:43,042 command_set.c:165:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:43,042 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-14T22:41:43,042 | ^~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,042 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-14T22:41:43,042 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-14T22:41:43,042 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,043 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:43,043 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-14T22:41:43,043 | ^~ ~~~~~~~~~~~ 2025-09-14T22:41:43,043 command_set.c:169:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:43,043 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-14T22:41:43,043 | ^~~~~~~~~~ 2025-09-14T22:41:43,043 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T22:41:43,043 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-14T22:41:43,043 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,044 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:43,044 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-14T22:41:43,044 | ^~ ~~~~~~~~~~~ 2025-09-14T22:41:43,044 command_set.c:174:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:43,044 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-14T22:41:43,044 | ^~~~~~~~~~ 2025-09-14T22:41:43,044 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T22:41:43,044 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-14T22:41:43,045 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,045 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:43,045 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-14T22:41:43,045 | ^~ ~~~~~~~~~~~ 2025-09-14T22:41:43,045 command_set.c:187:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:43,045 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-14T22:41:43,045 | ^~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,046 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-14T22:41:43,046 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-14T22:41:43,046 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,046 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T22:41:43,046 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T22:41:43,046 | ^ 2025-09-14T22:41:43,046 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T22:41:43,047 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T22:41:43,047 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,235 command_set.c: In function ‘uniq_sketch_union’: 2025-09-14T22:41:43,235 command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T22:41:43,236 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-09-14T22:41:43,236 | ^ 2025-09-14T22:41:43,236 command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2025-09-14T22:41:43,236 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-09-14T22:41:43,236 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,236 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T22:41:43,236 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T22:41:43,236 | ^ 2025-09-14T22:41:43,237 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T22:41:43,237 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T22:41:43,237 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,237 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:43,237 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-14T22:41:43,237 | ^~ ~~~~~~~~~~~ 2025-09-14T22:41:43,238 command_set.c:247:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:43,238 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-14T22:41:43,238 | ^~~~~~~~~~ 2025-09-14T22:41:43,238 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T22:41:43,238 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-14T22:41:43,238 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,238 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:43,239 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-14T22:41:43,239 | ^~ ~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,239 command_set.c:259:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:43,239 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-14T22:41:43,239 | ^~~~~~~~~~ 2025-09-14T22:41:43,239 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-14T22:41:43,239 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-14T22:41:43,239 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,399 command_set.c: In function ‘combin_pans’: 2025-09-14T22:41:43,399 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:43,399 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T22:41:43,399 | ^~ ~~~~~~~~~~~ 2025-09-14T22:41:43,400 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2025-09-14T22:41:43,400 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T22:41:43,400 | ^~~~~~~~~~ 2025-09-14T22:41:43,400 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2025-09-14T22:41:43,400 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T22:41:43,400 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,401 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:43,401 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T22:41:43,401 | ^~ ~~~~~~~~~~ 2025-09-14T22:41:43,401 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2025-09-14T22:41:43,401 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T22:41:43,401 | ^~~~~~~~~~ 2025-09-14T22:41:43,401 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2025-09-14T22:41:43,402 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T22:41:43,402 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,403 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T22:41:43,403 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T22:41:43,403 | ^ 2025-09-14T22:41:43,403 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T22:41:43,403 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T22:41:43,403 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,649 command_set.c: In function ‘combin_subset_pans’: 2025-09-14T22:41:43,649 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:43,650 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-14T22:41:43,650 | ^~ ~~~~~~~~~~~ 2025-09-14T22:41:43,650 command_set.c:469:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:43,650 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-14T22:41:43,651 | ^~~~~~~~~~ 2025-09-14T22:41:43,651 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T22:41:43,651 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-14T22:41:43,651 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,652 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:43,652 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-14T22:41:43,652 | ^~ ~~~~~~~~~~ 2025-09-14T22:41:43,653 command_set.c:475:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:43,653 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-14T22:41:43,653 | ^~~~~~~~~~ 2025-09-14T22:41:43,653 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-14T22:41:43,653 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-14T22:41:43,653 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,654 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:43,654 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T22:41:43,654 | ^~ ~~~~~~~~~~~ 2025-09-14T22:41:43,655 command_set.c:481:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:43,655 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T22:41:43,655 | ^~~~~~~~~~ 2025-09-14T22:41:43,655 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T22:41:43,655 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T22:41:43,656 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,657 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:43,657 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T22:41:43,657 | ^~ ~~~~~~~~~~ 2025-09-14T22:41:43,657 command_set.c:512:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:43,657 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T22:41:43,657 | ^~~~~~~~~~ 2025-09-14T22:41:43,658 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-14T22:41:43,658 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T22:41:43,658 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,659 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T22:41:43,659 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T22:41:43,659 | ^ 2025-09-14T22:41:43,659 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T22:41:43,660 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T22:41:43,660 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,927 command_set.c: In function ‘grouping_genomes’: 2025-09-14T22:41:43,928 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:43,928 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-14T22:41:43,928 | ^~ ~~~~~~~~~~~ 2025-09-14T22:41:43,929 command_set.c:574:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:43,929 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-14T22:41:43,929 | ^~~~~~~~~~ 2025-09-14T22:41:43,929 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T22:41:43,930 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-14T22:41:43,930 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,931 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:43,931 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-14T22:41:43,931 | ^~ ~~~~~~~~~~ 2025-09-14T22:41:43,931 command_set.c:580:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:43,931 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-14T22:41:43,932 | ^~~~~~~~~~ 2025-09-14T22:41:43,932 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-14T22:41:43,932 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-14T22:41:43,932 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,934 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:43,934 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T22:41:43,934 | ^~ ~~~~~~~~~~~ 2025-09-14T22:41:43,934 command_set.c:612:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:43,935 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T22:41:43,935 | ^~~~~~~~~~ 2025-09-14T22:41:43,935 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-14T22:41:43,935 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-14T22:41:43,936 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,937 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-14T22:41:43,937 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T22:41:43,937 | ^~ ~~~~~~~~~~ 2025-09-14T22:41:43,938 command_set.c:634:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-14T22:41:43,938 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T22:41:43,938 | ^~~~~~~~~~ 2025-09-14T22:41:43,938 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-14T22:41:43,939 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-14T22:41:43,939 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:43,939 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-14T22:41:43,940 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T22:41:43,940 | ^ 2025-09-14T22:41:43,940 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-14T22:41:43,940 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-14T22:41:43,941 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-14T22:41:44,250 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-313/command_shuffle.o -fopenmp 2025-09-14T22:41:44,581 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c global_basic.c -o build/temp.linux-armv7l-cpython-313/global_basic.o -fopenmp 2025-09-14T22:41:44,758 global_basic.c: In function ‘organize_infile_list’: 2025-09-14T22:41:44,758 global_basic.c:195:20: error: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2025-09-14T22:41:44,759 195 | while (isspace(*buf)) buf++; 2025-09-14T22:41:44,759 | ^~~~~~~ 2025-09-14T22:41:44,759 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2025-09-14T22:41:44,759 34 | #include 2025-09-14T22:41:44,759 +++ |+#include 2025-09-14T22:41:44,759 35 | 2025-09-14T22:41:44,759 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T22:41:44,760 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-14T22:41:44,760 | ~~^ 2025-09-14T22:41:44,760 | | 2025-09-14T22:41:44,760 | long unsigned int 2025-09-14T22:41:44,760 | %u 2025-09-14T22:41:44,760 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-14T22:41:44,760 | ~~~~~~~~~~~ 2025-09-14T22:41:44,761 | | 2025-09-14T22:41:44,761 | size_t {aka unsigned int} 2025-09-14T22:41:44,761 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-14T22:41:44,761 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-14T22:41:44,761 | ~~^ 2025-09-14T22:41:44,762 | | 2025-09-14T22:41:44,762 | long unsigned int 2025-09-14T22:41:44,762 | %u 2025-09-14T22:41:44,762 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-14T22:41:44,762 | ~~~~~~~~~~~ 2025-09-14T22:41:44,762 | | 2025-09-14T22:41:44,762 | size_t {aka unsigned int} 2025-09-14T22:41:44,784 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-14T22:41:44,950 ERROR: python setup.py bdist_wheel exited with 1 2025-09-14T22:41:44,964 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-14T22:41:44,964 exec(compile('"'"''"'"''"'"' 2025-09-14T22:41:44,964 # This is -- a caller that pip uses to run setup.py 2025-09-14T22:41:44,964 # 2025-09-14T22:41:44,964 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-14T22:41:44,964 # import from `distutils.core` to work with newer packaging standards. 2025-09-14T22:41:44,964 # - It provides a clear error message when setuptools is not installed. 2025-09-14T22:41:44,964 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-14T22:41:44,964 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-14T22:41:44,964 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-14T22:41:44,964 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-14T22:41:44,964 import os, sys, tokenize, traceback 2025-09-14T22:41:44,964 2025-09-14T22:41:44,964 try: 2025-09-14T22:41:44,964 import setuptools 2025-09-14T22:41:44,964 except ImportError: 2025-09-14T22:41:44,964 print( 2025-09-14T22:41:44,964 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-14T22:41:44,964 "the build environment with exception:", 2025-09-14T22:41:44,964 file=sys.stderr, 2025-09-14T22:41:44,964 ) 2025-09-14T22:41:44,964 traceback.print_exc() 2025-09-14T22:41:44,964 sys.exit(1) 2025-09-14T22:41:44,964 2025-09-14T22:41:44,964 __file__ = %r 2025-09-14T22:41:44,964 sys.argv[0] = __file__ 2025-09-14T22:41:44,964 2025-09-14T22:41:44,964 if os.path.exists(__file__): 2025-09-14T22:41:44,964 filename = __file__ 2025-09-14T22:41:44,964 with tokenize.open(__file__) as f: 2025-09-14T22:41:44,964 setup_py_code = f.read() 2025-09-14T22:41:44,964 else: 2025-09-14T22:41:44,964 filename = "" 2025-09-14T22:41:44,964 setup_py_code = "from setuptools import setup; setup()" 2025-09-14T22:41:44,964 2025-09-14T22:41:44,964 exec(compile(setup_py_code, filename, "exec")) 2025-09-14T22:41:44,964 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-qoj0m6ou/kssdtree_ebc52a8b8af14862bb5f25a743f10400/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-90xk_mka[/] 2025-09-14T22:41:44,964 [bold magenta]cwd[/]: /tmp/pip-wheel-qoj0m6ou/kssdtree_ebc52a8b8af14862bb5f25a743f10400/ 2025-09-14T22:41:44,965 Building wheel for kssdtree (setup.py): finished with status 'error' 2025-09-14T22:41:44,965 ERROR: Failed building wheel for kssdtree 2025-09-14T22:41:44,966 Running setup.py clean for kssdtree 2025-09-14T22:41:44,967 Running command python setup.py clean 2025-09-14T22:41:46,345 running clean 2025-09-14T22:41:46,515 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-14T22:41:46,515 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-14T22:41:46,516 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-14T22:41:46,516 'build/scripts-3.13' does not exist -- can't clean it 2025-09-14T22:41:46,516 removing 'build' 2025-09-14T22:41:46,644 Failed to build kssdtree 2025-09-14T22:41:46,645 ERROR: Failed to build one or more wheels 2025-09-14T22:41:46,646 Exception information: 2025-09-14T22:41:46,646 Traceback (most recent call last): 2025-09-14T22:41:46,646 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-14T22:41:46,646 status = _inner_run() 2025-09-14T22:41:46,646 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-14T22:41:46,646 return self.run(options, args) 2025-09-14T22:41:46,646 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-14T22:41:46,646 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-14T22:41:46,646 return func(self, options, args) 2025-09-14T22:41:46,646 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-14T22:41:46,646 raise CommandError("Failed to build one or more wheels") 2025-09-14T22:41:46,646 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-14T22:41:46,651 Removed build tracker: '/tmp/pip-build-tracker-t09spzv1'