2025-09-15T12:24:32,245 Created temporary directory: /tmp/pip-build-tracker-pzku3y5r 2025-09-15T12:24:32,245 Initialized build tracking at /tmp/pip-build-tracker-pzku3y5r 2025-09-15T12:24:32,245 Created build tracker: /tmp/pip-build-tracker-pzku3y5r 2025-09-15T12:24:32,245 Entered build tracker: /tmp/pip-build-tracker-pzku3y5r 2025-09-15T12:24:32,246 Created temporary directory: /tmp/pip-wheel-qklwtf07 2025-09-15T12:24:32,249 Created temporary directory: /tmp/pip-ephem-wheel-cache-1tkl4wjm 2025-09-15T12:24:32,307 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-15T12:24:32,309 2 location(s) to search for versions of kssdtree: 2025-09-15T12:24:32,309 * https://pypi.org/simple/kssdtree/ 2025-09-15T12:24:32,309 * https://www.piwheels.org/simple/kssdtree/ 2025-09-15T12:24:32,310 Fetching project page and analyzing links: https://pypi.org/simple/kssdtree/ 2025-09-15T12:24:32,310 Getting page https://pypi.org/simple/kssdtree/ 2025-09-15T12:24:32,311 Found index url https://pypi.org/simple/ 2025-09-15T12:24:32,461 Fetched page https://pypi.org/simple/kssdtree/ as application/vnd.pypi.simple.v1+json 2025-09-15T12:24:32,466 Found link https://files.pythonhosted.org/packages/d5/1e/9e5c5945a44bb40002d1c259f734a531999fa6e87db89fe7c7ddcfc583cc/kssdtree-1.1.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.1 2025-09-15T12:24:32,467 Found link https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.2 2025-09-15T12:24:32,468 Found link https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.3 2025-09-15T12:24:32,468 Found link https://files.pythonhosted.org/packages/20/ea/b0301924e3f7d367cbb7b8da66837dba9af2a332bf56ed35e03a33faee76/kssdtree-1.1.4.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.4 2025-09-15T12:24:32,469 Found link https://files.pythonhosted.org/packages/41/65/ed35110b84bc0dd02b9add0104f10160754d2ea0882191767d512146a884/kssdtree-1.1.6.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.6 2025-09-15T12:24:32,469 Found link https://files.pythonhosted.org/packages/cd/4b/d886cbcc573ff0969da7d9c756049925b86141e60ee6708dfbbe0644d008/kssdtree-1.1.7.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.7 2025-09-15T12:24:32,470 Found link https://files.pythonhosted.org/packages/7e/8a/a62c8adc92df69ab8cb242827ee64a3e2b6d5c89b83425785dd00605af17/kssdtree-1.1.8.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.8 2025-09-15T12:24:32,470 Found link https://files.pythonhosted.org/packages/da/db/e458cca6427752c05428d2378ccdee631d32f760174fdaba65f73125e71b/kssdtree-1.1.9.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.9 2025-09-15T12:24:32,470 Found link https://files.pythonhosted.org/packages/9d/47/017180a30e73e421372377cbe6d01c5e51a5108ea2177f20ccd7d283f8d1/kssdtree-2.0.0.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.0 2025-09-15T12:24:32,471 Found link https://files.pythonhosted.org/packages/ba/39/d443cac955912a0371c93b797311cb9ec3a8d6ee0a5d7673376d826aa6b2/kssdtree-2.0.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.1 2025-09-15T12:24:32,471 Found link https://files.pythonhosted.org/packages/2e/32/e53c0e3735cbc913b2c96b4e0e1c1005fe816a4d71b38b80cdcfb5c67fa8/kssdtree-2.0.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.2 2025-09-15T12:24:32,472 Found link https://files.pythonhosted.org/packages/c0/0f/effc10c8e76dbe3b9a35a4b4d9e65a0a889ee805e10334541c3ca7ae3b94/kssdtree-2.0.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.3 2025-09-15T12:24:32,472 Found link https://files.pythonhosted.org/packages/fc/8d/d3790baa2f2f0a01c913005b94a82dc13ef601e7015e662ccff94bb1b458/kssdtree-2.0.4.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.4 2025-09-15T12:24:32,473 Found link https://files.pythonhosted.org/packages/b5/f8/19480a4c57704944f973ebf534f9582054949cca20170a33c6f874974440/kssdtree-2.0.5.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.5 2025-09-15T12:24:32,473 Found link https://files.pythonhosted.org/packages/46/ef/2d920d5d2fceded48c7add363e04f49ae85414bcd4360e1295d6fddc4a24/kssdtree-2.0.6.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.6 2025-09-15T12:24:32,474 Found link https://files.pythonhosted.org/packages/9c/1c/c6b3f05465d145856ac992328bd59e776286a59b120254620c1dbffcf67f/kssdtree-2.0.7.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.7 2025-09-15T12:24:32,474 Found link https://files.pythonhosted.org/packages/82/9b/dac2af6572f0c4421e5ba8341dcfddac466de30c62acfa019d9ef70b2670/kssdtree-2.0.8.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.8 2025-09-15T12:24:32,475 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdtree/ 2025-09-15T12:24:32,475 Getting page https://www.piwheels.org/simple/kssdtree/ 2025-09-15T12:24:32,477 Found index url https://www.piwheels.org/simple/ 2025-09-15T12:24:32,569 Fetched page https://www.piwheels.org/simple/kssdtree/ as text/html 2025-09-15T12:24:32,581 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv6l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,581 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv7l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,581 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv6l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,581 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv7l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,582 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp311-cp311-linux_armv6l.whl#sha256=97a69f799c2d1b7024a9033b8a1e3fc17af4748a1ed726f52397d884303eb870 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,583 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp311-cp311-linux_armv7l.whl#sha256=97a69f799c2d1b7024a9033b8a1e3fc17af4748a1ed726f52397d884303eb870 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,583 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp39-cp39-linux_armv6l.whl#sha256=00938a03bead64e58bc1928832b7952b04d844e79b41da12160490c7edbb9e9f (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,583 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp39-cp39-linux_armv6l.whl#sha256=f629766f3426bb8a83c6f4adca8b02b03cb85452c129c9694cef65efd715fabd (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,583 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp39-cp39-linux_armv7l.whl#sha256=f629766f3426bb8a83c6f4adca8b02b03cb85452c129c9694cef65efd715fabd (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,583 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp311-cp311-linux_armv6l.whl#sha256=ae7417e30efd12d8c6800d4167141c94a93f1ce51afd5ae9196cdfb6057ca7d2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,584 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp311-cp311-linux_armv7l.whl#sha256=ae7417e30efd12d8c6800d4167141c94a93f1ce51afd5ae9196cdfb6057ca7d2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,584 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv6l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,584 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv7l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,584 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.1-cp311-cp311-linux_armv6l.whl#sha256=8b8c3190a5a4a010758772e9d53c3c12436541437bc9c503bec9a8f6a007cdcc (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,584 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.1-cp311-cp311-linux_armv7l.whl#sha256=8b8c3190a5a4a010758772e9d53c3c12436541437bc9c503bec9a8f6a007cdcc (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,584 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.0-cp311-cp311-linux_armv6l.whl#sha256=16a2e46376ed2874435371fd57a97405d4b631b35c014b9e395a4528a1e655b8 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,584 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv6l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,586 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv7l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,586 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp311-cp311-linux_armv6l.whl#sha256=388a8dabd657ea83e6d22b52300337c74e9d84e506806cfd4d2a76eb98777e17 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,586 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv6l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,586 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv7l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,587 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv6l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,587 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv7l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,587 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv6l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,587 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv7l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,587 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,587 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,587 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,587 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,588 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,588 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,588 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv6l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,588 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv7l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,588 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,588 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,588 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,589 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,589 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,589 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,589 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,589 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,589 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv6l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,589 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv7l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,589 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,590 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,590 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,590 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:24:32,590 Skipping link: not a file: https://www.piwheels.org/simple/kssdtree/ 2025-09-15T12:24:32,590 Skipping link: not a file: https://pypi.org/simple/kssdtree/ 2025-09-15T12:24:32,615 Given no hashes to check 1 links for project 'kssdtree': discarding no candidates 2025-09-15T12:24:32,616 Collecting kssdtree==2.0.6 2025-09-15T12:24:32,617 Created temporary directory: /tmp/pip-unpack-5jynmb7h 2025-09-15T12:24:32,755 Downloading kssdtree-2.0.6.tar.gz (113 kB) 2025-09-15T12:24:32,854 Added kssdtree==2.0.6 from https://files.pythonhosted.org/packages/46/ef/2d920d5d2fceded48c7add363e04f49ae85414bcd4360e1295d6fddc4a24/kssdtree-2.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-pzku3y5r' 2025-09-15T12:24:32,855 Running setup.py (path:/tmp/pip-wheel-qklwtf07/kssdtree_1d5d60d1e0b544bcb0d893eacb0ee5e9/setup.py) egg_info for package kssdtree 2025-09-15T12:24:32,855 Created temporary directory: /tmp/pip-pip-egg-info-kcazhdi_ 2025-09-15T12:24:32,856 Preparing metadata (setup.py): started 2025-09-15T12:24:32,856 Running command python setup.py egg_info 2025-09-15T12:24:33,990 running egg_info 2025-09-15T12:24:34,062 creating /tmp/pip-pip-egg-info-kcazhdi_/kssdtree.egg-info 2025-09-15T12:24:34,063 writing /tmp/pip-pip-egg-info-kcazhdi_/kssdtree.egg-info/PKG-INFO 2025-09-15T12:24:34,064 writing dependency_links to /tmp/pip-pip-egg-info-kcazhdi_/kssdtree.egg-info/dependency_links.txt 2025-09-15T12:24:34,065 writing requirements to /tmp/pip-pip-egg-info-kcazhdi_/kssdtree.egg-info/requires.txt 2025-09-15T12:24:34,065 writing top-level names to /tmp/pip-pip-egg-info-kcazhdi_/kssdtree.egg-info/top_level.txt 2025-09-15T12:24:34,065 writing manifest file '/tmp/pip-pip-egg-info-kcazhdi_/kssdtree.egg-info/SOURCES.txt' 2025-09-15T12:24:34,356 reading manifest file '/tmp/pip-pip-egg-info-kcazhdi_/kssdtree.egg-info/SOURCES.txt' 2025-09-15T12:24:34,357 reading manifest template 'MANIFEST.in' 2025-09-15T12:24:34,363 writing manifest file '/tmp/pip-pip-egg-info-kcazhdi_/kssdtree.egg-info/SOURCES.txt' 2025-09-15T12:24:34,478 Preparing metadata (setup.py): finished with status 'done' 2025-09-15T12:24:34,482 Source in /tmp/pip-wheel-qklwtf07/kssdtree_1d5d60d1e0b544bcb0d893eacb0ee5e9 has version 2.0.6, which satisfies requirement kssdtree==2.0.6 from https://files.pythonhosted.org/packages/46/ef/2d920d5d2fceded48c7add363e04f49ae85414bcd4360e1295d6fddc4a24/kssdtree-2.0.6.tar.gz 2025-09-15T12:24:34,482 Removed kssdtree==2.0.6 from https://files.pythonhosted.org/packages/46/ef/2d920d5d2fceded48c7add363e04f49ae85414bcd4360e1295d6fddc4a24/kssdtree-2.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-pzku3y5r' 2025-09-15T12:24:34,486 Created temporary directory: /tmp/pip-unpack-462br9qj 2025-09-15T12:24:34,486 Created temporary directory: /tmp/pip-unpack-tkukwdmq 2025-09-15T12:24:34,486 Building wheels for collected packages: kssdtree 2025-09-15T12:24:34,487 Created temporary directory: /tmp/pip-wheel-3fwlywic 2025-09-15T12:24:34,488 DEPRECATION: Building 'kssdtree' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'kssdtree'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-15T12:24:34,489 Building wheel for kssdtree (setup.py): started 2025-09-15T12:24:34,489 Destination directory: /tmp/pip-wheel-3fwlywic 2025-09-15T12:24:34,490 Running command python setup.py bdist_wheel 2025-09-15T12:24:35,538 running bdist_wheel 2025-09-15T12:24:35,895 running build 2025-09-15T12:24:35,896 running build_py 2025-09-15T12:24:35,970 creating build/lib.linux-armv7l-cpython-313 2025-09-15T12:24:35,971 copying kssdtree.py -> build/lib.linux-armv7l-cpython-313 2025-09-15T12:24:35,971 copying toolutils.py -> build/lib.linux-armv7l-cpython-313 2025-09-15T12:24:35,972 running egg_info 2025-09-15T12:24:36,044 writing kssdtree.egg-info/PKG-INFO 2025-09-15T12:24:36,045 writing dependency_links to kssdtree.egg-info/dependency_links.txt 2025-09-15T12:24:36,046 writing requirements to kssdtree.egg-info/requires.txt 2025-09-15T12:24:36,046 writing top-level names to kssdtree.egg-info/top_level.txt 2025-09-15T12:24:36,120 reading manifest file 'kssdtree.egg-info/SOURCES.txt' 2025-09-15T12:24:36,125 reading manifest template 'MANIFEST.in' 2025-09-15T12:24:36,132 writing manifest file 'kssdtree.egg-info/SOURCES.txt' 2025-09-15T12:24:36,133 running build_ext 2025-09-15T12:24:36,493 building 'kssd' extension 2025-09-15T12:24:36,495 creating build/temp.linux-armv7l-cpython-313 2025-09-15T12:24:36,497 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c co2mco.c -o build/temp.linux-armv7l-cpython-313/co2mco.o -fopenmp 2025-09-15T12:24:36,667 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2025-09-15T12:24:36,667 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-15T12:24:36,667 109 | for (unsigned int i = 0; i < comp_num; i++) { 2025-09-15T12:24:36,667 | ^ 2025-09-15T12:24:36,671 co2mco.c: In function ‘co2unitllmco’: 2025-09-15T12:24:36,671 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-15T12:24:36,672 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2025-09-15T12:24:36,672 | ^ 2025-09-15T12:24:37,357 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_composite.c -o build/temp.linux-armv7l-cpython-313/command_composite.o -fopenmp 2025-09-15T12:24:37,745 command_composite.c: In function ‘get_species_abundance’: 2025-09-15T12:24:37,745 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-15T12:24:37,745 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2025-09-15T12:24:37,745 | ^~ 2025-09-15T12:24:37,745 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-15T12:24:37,745 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2025-09-15T12:24:37,745 | ^~ 2025-09-15T12:24:37,746 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:37,746 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-15T12:24:37,746 | ^ 2025-09-15T12:24:37,746 command_composite.c:64:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:37,746 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-15T12:24:37,746 | ^~~~~~~~~~ 2025-09-15T12:24:37,746 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-15T12:24:37,746 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-15T12:24:37,746 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:37,746 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:37,746 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-15T12:24:37,747 | ^ 2025-09-15T12:24:37,747 command_composite.c:70:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:37,747 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-15T12:24:37,747 | ^~~~~~~~~~ 2025-09-15T12:24:37,747 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-15T12:24:37,747 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-15T12:24:37,747 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:37,747 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:37,747 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-15T12:24:37,747 | ^ 2025-09-15T12:24:37,748 command_composite.c:76:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:37,748 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-15T12:24:37,748 | ^~~~~~~~~~ 2025-09-15T12:24:37,748 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-15T12:24:37,748 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-15T12:24:37,748 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:37,748 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:37,748 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-15T12:24:37,748 | ^ 2025-09-15T12:24:37,748 command_composite.c:82:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:37,749 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-15T12:24:37,749 | ^~~~~~~~~~ 2025-09-15T12:24:37,749 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-15T12:24:37,749 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-15T12:24:37,749 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:37,749 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:37,749 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-15T12:24:37,749 | ^ 2025-09-15T12:24:37,749 command_composite.c:88:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:37,749 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-15T12:24:37,749 | ^~~~~~~~~~~~ 2025-09-15T12:24:37,750 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2025-09-15T12:24:37,750 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-15T12:24:37,750 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:37,995 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist.c -o build/temp.linux-armv7l-cpython-313/command_dist.o -fopenmp 2025-09-15T12:24:38,228 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-15T12:24:38,230 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T12:24:38,230 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-15T12:24:38,230 | ~~^ 2025-09-15T12:24:38,230 | | 2025-09-15T12:24:38,231 | long unsigned int 2025-09-15T12:24:38,231 | %u 2025-09-15T12:24:38,231 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-15T12:24:38,231 | ~~~~~~~ 2025-09-15T12:24:38,231 | | 2025-09-15T12:24:38,231 | size_t {aka unsigned int} 2025-09-15T12:24:38,232 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T12:24:38,232 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-15T12:24:38,232 | ~~^ 2025-09-15T12:24:38,232 | | 2025-09-15T12:24:38,232 | long unsigned int 2025-09-15T12:24:38,233 | %u 2025-09-15T12:24:38,233 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-15T12:24:38,233 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-15T12:24:38,233 | ~~~~~~~~~ 2025-09-15T12:24:38,233 | | 2025-09-15T12:24:38,233 | size_t {aka unsigned int} 2025-09-15T12:24:38,234 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-15T12:24:38,234 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-15T12:24:38,234 | ~~^ 2025-09-15T12:24:38,234 | | 2025-09-15T12:24:38,234 | long unsigned int 2025-09-15T12:24:38,234 | %u 2025-09-15T12:24:38,235 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-15T12:24:38,235 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-15T12:24:38,235 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:38,235 | | 2025-09-15T12:24:38,235 | unsigned int 2025-09-15T12:24:38,237 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-15T12:24:38,237 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2025-09-15T12:24:38,237 | ^ 2025-09-15T12:24:38,244 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-15T12:24:38,247 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T12:24:38,247 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-15T12:24:38,247 | ~~^ ~~~~~~~ 2025-09-15T12:24:38,247 | | | 2025-09-15T12:24:38,247 | long unsigned int size_t {aka unsigned int} 2025-09-15T12:24:38,247 | %u 2025-09-15T12:24:38,249 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T12:24:38,249 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-15T12:24:38,249 | ~~^ 2025-09-15T12:24:38,249 | | 2025-09-15T12:24:38,249 | long unsigned int 2025-09-15T12:24:38,249 | %u 2025-09-15T12:24:38,250 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-15T12:24:38,250 | ~~~~~~~~~ 2025-09-15T12:24:38,250 | | 2025-09-15T12:24:38,250 | size_t {aka unsigned int} 2025-09-15T12:24:38,251 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-15T12:24:38,252 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-15T12:24:38,252 | ~~^ 2025-09-15T12:24:38,252 | | 2025-09-15T12:24:38,252 | long unsigned int 2025-09-15T12:24:38,252 | %u 2025-09-15T12:24:38,252 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-15T12:24:38,252 865 | (size_t) b * unitsz_distf_mapped); 2025-09-15T12:24:38,252 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:38,252 | | 2025-09-15T12:24:38,252 | unsigned int 2025-09-15T12:24:38,254 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2025-09-15T12:24:38,254 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2025-09-15T12:24:38,254 | ^~~~~~~ 2025-09-15T12:24:38,255 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2025-09-15T12:24:38,255 809 | struct stat cbd_fcode_stat; 2025-09-15T12:24:38,255 | ^~~~~~~~~~~~~~ 2025-09-15T12:24:38,256 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2025-09-15T12:24:38,256 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-15T12:24:38,257 | ^~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:38,257 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2025-09-15T12:24:38,257 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-15T12:24:38,258 | ^~~~~~~~~~~~~~~~~ 2025-09-15T12:24:38,264 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-15T12:24:38,266 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T12:24:38,267 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-15T12:24:38,267 | ~~^ 2025-09-15T12:24:38,267 | | 2025-09-15T12:24:38,267 | long unsigned int 2025-09-15T12:24:38,267 | %u 2025-09-15T12:24:38,267 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-15T12:24:38,267 | ~~~~~~~ 2025-09-15T12:24:38,267 | | 2025-09-15T12:24:38,267 | size_t {aka unsigned int} 2025-09-15T12:24:38,269 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T12:24:38,270 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-15T12:24:38,270 | ~~^ 2025-09-15T12:24:38,270 | | 2025-09-15T12:24:38,270 | long unsigned int 2025-09-15T12:24:38,270 | %u 2025-09-15T12:24:38,270 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-15T12:24:38,270 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-15T12:24:38,270 | ~~~~~~~~~ 2025-09-15T12:24:38,270 | | 2025-09-15T12:24:38,270 | size_t {aka unsigned int} 2025-09-15T12:24:38,272 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-15T12:24:38,272 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-15T12:24:38,273 | ~~^ 2025-09-15T12:24:38,273 | | 2025-09-15T12:24:38,273 | long unsigned int 2025-09-15T12:24:38,273 | %u 2025-09-15T12:24:38,273 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-15T12:24:38,273 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-15T12:24:38,273 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:38,273 | | 2025-09-15T12:24:38,273 | unsigned int 2025-09-15T12:24:38,278 command_dist.c: In function ‘mco_co_dist_core’: 2025-09-15T12:24:38,279 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-15T12:24:38,279 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2025-09-15T12:24:38,279 | ^ 2025-09-15T12:24:38,280 command_dist.c: In function ‘fname_dist_print’: 2025-09-15T12:24:38,282 command_dist.c:1163:25: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘__off64_t’ {aka ‘long long int’} [-Wsign-compare] 2025-09-15T12:24:38,282 1163 | for (llong i = 0; i < s.st_size / sizeof(ctx_obj_ct_t); i++) { 2025-09-15T12:24:38,282 | ^ 2025-09-15T12:24:38,287 command_dist.c: In function ‘koc_dist_print_nobin’: 2025-09-15T12:24:38,288 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T12:24:38,288 1239 | for (int rid = 0; rid < ref_num; rid++) 2025-09-15T12:24:38,288 | ^ 2025-09-15T12:24:38,291 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T12:24:38,291 1245 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-15T12:24:38,291 | ^ 2025-09-15T12:24:38,297 command_dist.c: In function ‘dist_print_nobin’: 2025-09-15T12:24:38,298 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T12:24:38,298 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2025-09-15T12:24:38,298 | ^ 2025-09-15T12:24:38,301 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T12:24:38,301 1356 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-15T12:24:38,301 | ^ 2025-09-15T12:24:38,304 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T12:24:38,304 1382 | for (int rid = 0; rid < ref_num; rid++) 2025-09-15T12:24:38,304 | ^ 2025-09-15T12:24:38,700 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2025-09-15T12:24:38,701 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2025-09-15T12:24:38,701 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2025-09-15T12:24:38,701 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:38,701 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2025-09-15T12:24:38,701 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2025-09-15T12:24:38,701 | ^~~~~~~~~~~~ 2025-09-15T12:24:39,508 command_dist.c: In function ‘get_dim_shuffle’: 2025-09-15T12:24:39,508 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2025-09-15T12:24:39,508 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-15T12:24:39,508 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:39,508 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2025-09-15T12:24:39,509 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-15T12:24:39,509 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:40,431 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-15T12:24:40,432 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:40,432 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-15T12:24:40,432 | ^~ ~~~~~~~~~ 2025-09-15T12:24:40,433 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-15T12:24:40,433 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-15T12:24:40,433 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:40,434 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T12:24:40,434 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-15T12:24:40,434 | ^~~~~~~~~~~~~~~ 2025-09-15T12:24:40,435 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-15T12:24:40,435 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-15T12:24:40,435 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:40,437 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T12:24:40,437 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-15T12:24:40,437 | ^~~~~~~~~~~ 2025-09-15T12:24:40,438 command_dist.c:681:38: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:40,438 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-15T12:24:40,438 | ^~~~~~~~~~~~~~~~~ 2025-09-15T12:24:40,439 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-15T12:24:40,439 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-15T12:24:40,439 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:40,440 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T12:24:40,440 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-15T12:24:40,440 | ^~~~~ 2025-09-15T12:24:40,440 command_dist.c:682:32: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:40,441 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-15T12:24:40,441 | ^~~~~~~~~~~ 2025-09-15T12:24:40,441 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-15T12:24:40,441 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-15T12:24:40,441 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:40,691 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-15T12:24:40,692 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:40,692 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-15T12:24:40,692 | ^~ ~~~~~~~~~ 2025-09-15T12:24:40,693 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-15T12:24:40,693 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-15T12:24:40,693 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:40,694 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T12:24:40,694 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-15T12:24:40,694 | ^~~~~~~~~~~~~~~ 2025-09-15T12:24:40,695 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-15T12:24:40,695 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-15T12:24:40,695 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:40,696 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T12:24:40,696 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-15T12:24:40,697 | ^~~~~~~~~~~~~ 2025-09-15T12:24:40,697 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-15T12:24:40,698 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-15T12:24:40,698 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:40,699 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:40,699 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-15T12:24:40,699 | ^ 2025-09-15T12:24:40,700 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2025-09-15T12:24:40,700 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-15T12:24:40,700 | ^~~~~~~~~~ 2025-09-15T12:24:40,701 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-15T12:24:40,701 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-15T12:24:40,701 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:40,702 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:40,702 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-15T12:24:40,703 | ^ 2025-09-15T12:24:40,703 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2025-09-15T12:24:40,704 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-15T12:24:40,704 | ^~~~~~~~~~ 2025-09-15T12:24:40,705 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-15T12:24:40,705 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-15T12:24:40,705 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:40,972 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-15T12:24:40,974 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:40,974 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-15T12:24:40,974 | ^~ ~~~~~~~~~ 2025-09-15T12:24:40,975 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-15T12:24:40,975 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-15T12:24:40,976 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:40,977 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T12:24:40,977 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-15T12:24:40,977 | ^~~~~~~~~~~~~~~ 2025-09-15T12:24:40,978 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-15T12:24:40,978 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-15T12:24:40,978 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:40,979 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T12:24:40,980 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-15T12:24:40,980 | ^~~~~~~~~~~~~ 2025-09-15T12:24:40,981 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-15T12:24:40,981 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-15T12:24:40,981 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:40,983 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T12:24:40,984 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-15T12:24:40,984 | ^~~~~~~~~~~ 2025-09-15T12:24:40,985 command_dist.c:1022:38: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:40,985 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-15T12:24:40,985 | ^~~~~~~~~~~~~~~~~ 2025-09-15T12:24:40,986 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-15T12:24:40,987 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-15T12:24:40,987 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:40,988 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T12:24:40,988 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-15T12:24:40,988 | ^~~~~ 2025-09-15T12:24:40,989 command_dist.c:1023:32: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:40,989 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-15T12:24:40,990 | ^~~~~~~~~~~ 2025-09-15T12:24:40,991 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-15T12:24:40,991 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-15T12:24:40,991 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:41,273 command_dist.c: In function ‘combine_queries’: 2025-09-15T12:24:41,275 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T12:24:41,275 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-15T12:24:41,275 | ^ 2025-09-15T12:24:41,276 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T12:24:41,277 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-15T12:24:41,277 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:41,278 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T12:24:41,279 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-15T12:24:41,279 | ^ 2025-09-15T12:24:41,280 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T12:24:41,281 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-15T12:24:41,281 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:41,284 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:41,284 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-15T12:24:41,284 | ^~ ~~~~~~~~ 2025-09-15T12:24:41,286 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-15T12:24:41,286 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-15T12:24:41,286 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:41,775 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-313/command_dist_wrapper.o -fopenmp 2025-09-15T12:24:41,945 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_set.c -o build/temp.linux-armv7l-cpython-313/command_set.o -fopenmp 2025-09-15T12:24:42,118 command_set.c: In function ‘sketch_operate’: 2025-09-15T12:24:42,119 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-15T12:24:42,119 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2025-09-15T12:24:42,119 | ^ 2025-09-15T12:24:42,130 command_set.c: In function ‘combin_subset_pans’: 2025-09-15T12:24:42,131 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-15T12:24:42,131 457 | free(co_dstat_fpath); 2025-09-15T12:24:42,131 | ^~~~~~~~~~~~~~ 2025-09-15T12:24:42,131 In file included from kssdheaders/global_basic.h:159, 2025-09-15T12:24:42,131 from command_set.c:15: 2025-09-15T12:24:42,132 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-15T12:24:42,132 687 | extern void free (void *__ptr) __THROW; 2025-09-15T12:24:42,132 | ~~~~~~^~~~~ 2025-09-15T12:24:42,138 command_set.c: In function ‘grouping_genomes’: 2025-09-15T12:24:42,138 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-15T12:24:42,138 562 | free(co_dstat_fpath); 2025-09-15T12:24:42,139 | ^~~~~~~~~~~~~~ 2025-09-15T12:24:42,139 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-15T12:24:42,139 687 | extern void free (void *__ptr) __THROW; 2025-09-15T12:24:42,139 | ~~~~~~^~~~~ 2025-09-15T12:24:42,318 command_set.c: In function ‘sketch_union’: 2025-09-15T12:24:42,318 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T12:24:42,319 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:24:42,319 | ^ 2025-09-15T12:24:42,319 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T12:24:42,319 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:24:42,319 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,319 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:42,319 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-15T12:24:42,319 | ^~ ~~~~~~~~~~~ 2025-09-15T12:24:42,319 command_set.c:82:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:42,319 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-15T12:24:42,320 | ^~~~~~~~~~ 2025-09-15T12:24:42,320 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T12:24:42,320 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-15T12:24:42,320 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,320 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:42,320 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-15T12:24:42,320 | ^~ ~~~~~~~~~~ 2025-09-15T12:24:42,320 command_set.c:92:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:42,320 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-15T12:24:42,320 | ^~~~~~~~~~ 2025-09-15T12:24:42,321 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-15T12:24:42,321 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-15T12:24:42,321 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,450 command_set.c: In function ‘sketch_operate’: 2025-09-15T12:24:42,450 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:42,450 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-15T12:24:42,450 | ^~ ~~~~~~~~~~ 2025-09-15T12:24:42,451 command_set.c:153:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:42,451 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-15T12:24:42,451 | ^~~~~~~~~~ 2025-09-15T12:24:42,451 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-15T12:24:42,451 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-15T12:24:42,451 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,451 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:42,451 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-15T12:24:42,451 | ^~ ~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,451 command_set.c:155:29: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:42,452 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-15T12:24:42,452 | ^~~~~~~~~~ 2025-09-15T12:24:42,452 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-15T12:24:42,452 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-15T12:24:42,452 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,452 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:42,452 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-15T12:24:42,452 | ^~ ~~~~~~~~~~~ 2025-09-15T12:24:42,452 command_set.c:165:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:42,452 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-15T12:24:42,452 | ^~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,453 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-15T12:24:42,453 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-15T12:24:42,453 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,453 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:42,453 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-15T12:24:42,453 | ^~ ~~~~~~~~~~~ 2025-09-15T12:24:42,453 command_set.c:169:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:42,453 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-15T12:24:42,453 | ^~~~~~~~~~ 2025-09-15T12:24:42,453 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T12:24:42,453 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-15T12:24:42,454 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,454 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:42,454 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-15T12:24:42,454 | ^~ ~~~~~~~~~~~ 2025-09-15T12:24:42,454 command_set.c:174:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:42,454 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-15T12:24:42,454 | ^~~~~~~~~~ 2025-09-15T12:24:42,454 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T12:24:42,454 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-15T12:24:42,454 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,454 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:42,455 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-15T12:24:42,455 | ^~ ~~~~~~~~~~~ 2025-09-15T12:24:42,455 command_set.c:187:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:42,455 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-15T12:24:42,455 | ^~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,455 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-15T12:24:42,455 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-15T12:24:42,455 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,455 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T12:24:42,455 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:24:42,456 | ^ 2025-09-15T12:24:42,456 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T12:24:42,456 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:24:42,456 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,623 command_set.c: In function ‘uniq_sketch_union’: 2025-09-15T12:24:42,624 command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T12:24:42,624 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-09-15T12:24:42,624 | ^ 2025-09-15T12:24:42,624 command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2025-09-15T12:24:42,624 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-09-15T12:24:42,624 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,624 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T12:24:42,624 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:24:42,624 | ^ 2025-09-15T12:24:42,624 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T12:24:42,625 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:24:42,625 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,625 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:42,625 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-15T12:24:42,625 | ^~ ~~~~~~~~~~~ 2025-09-15T12:24:42,625 command_set.c:247:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:42,626 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-15T12:24:42,626 | ^~~~~~~~~~ 2025-09-15T12:24:42,626 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T12:24:42,626 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-15T12:24:42,626 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,626 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:42,626 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-15T12:24:42,627 | ^~ ~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,627 command_set.c:259:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:42,627 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-15T12:24:42,627 | ^~~~~~~~~~ 2025-09-15T12:24:42,627 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-15T12:24:42,627 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-15T12:24:42,627 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,768 command_set.c: In function ‘combin_pans’: 2025-09-15T12:24:42,768 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:42,768 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T12:24:42,769 | ^~ ~~~~~~~~~~~ 2025-09-15T12:24:42,769 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2025-09-15T12:24:42,769 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T12:24:42,769 | ^~~~~~~~~~ 2025-09-15T12:24:42,769 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2025-09-15T12:24:42,769 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T12:24:42,769 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,770 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:42,770 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T12:24:42,770 | ^~ ~~~~~~~~~~ 2025-09-15T12:24:42,770 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2025-09-15T12:24:42,770 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T12:24:42,770 | ^~~~~~~~~~ 2025-09-15T12:24:42,771 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2025-09-15T12:24:42,771 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T12:24:42,771 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,771 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T12:24:42,772 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:24:42,772 | ^ 2025-09-15T12:24:42,772 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T12:24:42,772 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:24:42,772 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,989 command_set.c: In function ‘combin_subset_pans’: 2025-09-15T12:24:42,990 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:42,990 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-15T12:24:42,991 | ^~ ~~~~~~~~~~~ 2025-09-15T12:24:42,991 command_set.c:469:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:42,991 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-15T12:24:42,991 | ^~~~~~~~~~ 2025-09-15T12:24:42,992 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T12:24:42,992 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-15T12:24:42,992 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,993 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:42,993 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-15T12:24:42,993 | ^~ ~~~~~~~~~~ 2025-09-15T12:24:42,993 command_set.c:475:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:42,993 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-15T12:24:42,993 | ^~~~~~~~~~ 2025-09-15T12:24:42,994 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-15T12:24:42,994 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-15T12:24:42,994 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,995 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:42,995 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T12:24:42,995 | ^~ ~~~~~~~~~~~ 2025-09-15T12:24:42,995 command_set.c:481:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:42,995 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T12:24:42,995 | ^~~~~~~~~~ 2025-09-15T12:24:42,996 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T12:24:42,996 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T12:24:42,996 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,997 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:42,997 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T12:24:42,997 | ^~ ~~~~~~~~~~ 2025-09-15T12:24:42,998 command_set.c:512:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:42,998 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T12:24:42,998 | ^~~~~~~~~~ 2025-09-15T12:24:42,998 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-15T12:24:42,998 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T12:24:42,998 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:42,999 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T12:24:42,999 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:24:42,999 | ^ 2025-09-15T12:24:43,000 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T12:24:43,000 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:24:43,000 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:43,235 command_set.c: In function ‘grouping_genomes’: 2025-09-15T12:24:43,236 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:43,236 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-15T12:24:43,236 | ^~ ~~~~~~~~~~~ 2025-09-15T12:24:43,237 command_set.c:574:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:43,237 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-15T12:24:43,237 | ^~~~~~~~~~ 2025-09-15T12:24:43,238 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T12:24:43,238 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-15T12:24:43,238 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:43,239 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:43,239 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-15T12:24:43,239 | ^~ ~~~~~~~~~~ 2025-09-15T12:24:43,240 command_set.c:580:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:43,240 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-15T12:24:43,240 | ^~~~~~~~~~ 2025-09-15T12:24:43,240 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-15T12:24:43,240 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-15T12:24:43,241 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:43,242 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:43,242 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T12:24:43,242 | ^~ ~~~~~~~~~~~ 2025-09-15T12:24:43,243 command_set.c:612:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:43,243 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T12:24:43,243 | ^~~~~~~~~~ 2025-09-15T12:24:43,243 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T12:24:43,243 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T12:24:43,244 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:43,245 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:24:43,245 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T12:24:43,245 | ^~ ~~~~~~~~~~ 2025-09-15T12:24:43,246 command_set.c:634:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:24:43,246 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T12:24:43,246 | ^~~~~~~~~~ 2025-09-15T12:24:43,246 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-15T12:24:43,246 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T12:24:43,246 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:43,247 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T12:24:43,247 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:24:43,247 | ^ 2025-09-15T12:24:43,248 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T12:24:43,248 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:24:43,248 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:24:43,537 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-313/command_shuffle.o -fopenmp 2025-09-15T12:24:43,849 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c global_basic.c -o build/temp.linux-armv7l-cpython-313/global_basic.o -fopenmp 2025-09-15T12:24:44,025 global_basic.c: In function ‘organize_infile_list’: 2025-09-15T12:24:44,026 global_basic.c:195:20: error: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2025-09-15T12:24:44,026 195 | while (isspace(*buf)) buf++; 2025-09-15T12:24:44,026 | ^~~~~~~ 2025-09-15T12:24:44,026 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2025-09-15T12:24:44,026 34 | #include 2025-09-15T12:24:44,026 +++ |+#include 2025-09-15T12:24:44,026 35 | 2025-09-15T12:24:44,026 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T12:24:44,026 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-15T12:24:44,027 | ~~^ 2025-09-15T12:24:44,027 | | 2025-09-15T12:24:44,027 | long unsigned int 2025-09-15T12:24:44,027 | %u 2025-09-15T12:24:44,027 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-15T12:24:44,027 | ~~~~~~~~~~~ 2025-09-15T12:24:44,027 | | 2025-09-15T12:24:44,027 | size_t {aka unsigned int} 2025-09-15T12:24:44,028 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T12:24:44,028 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-15T12:24:44,028 | ~~^ 2025-09-15T12:24:44,028 | | 2025-09-15T12:24:44,028 | long unsigned int 2025-09-15T12:24:44,028 | %u 2025-09-15T12:24:44,028 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-15T12:24:44,029 | ~~~~~~~~~~~ 2025-09-15T12:24:44,029 | | 2025-09-15T12:24:44,029 | size_t {aka unsigned int} 2025-09-15T12:24:44,052 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-15T12:24:44,195 ERROR: python setup.py bdist_wheel exited with 1 2025-09-15T12:24:44,209 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-15T12:24:44,209 exec(compile('"'"''"'"''"'"' 2025-09-15T12:24:44,209 # This is -- a caller that pip uses to run setup.py 2025-09-15T12:24:44,209 # 2025-09-15T12:24:44,209 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-15T12:24:44,209 # import from `distutils.core` to work with newer packaging standards. 2025-09-15T12:24:44,209 # - It provides a clear error message when setuptools is not installed. 2025-09-15T12:24:44,209 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-15T12:24:44,209 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-15T12:24:44,209 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-15T12:24:44,209 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-15T12:24:44,209 import os, sys, tokenize, traceback 2025-09-15T12:24:44,209 2025-09-15T12:24:44,209 try: 2025-09-15T12:24:44,209 import setuptools 2025-09-15T12:24:44,209 except ImportError: 2025-09-15T12:24:44,209 print( 2025-09-15T12:24:44,209 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-15T12:24:44,209 "the build environment with exception:", 2025-09-15T12:24:44,209 file=sys.stderr, 2025-09-15T12:24:44,209 ) 2025-09-15T12:24:44,209 traceback.print_exc() 2025-09-15T12:24:44,209 sys.exit(1) 2025-09-15T12:24:44,209 2025-09-15T12:24:44,209 __file__ = %r 2025-09-15T12:24:44,209 sys.argv[0] = __file__ 2025-09-15T12:24:44,209 2025-09-15T12:24:44,209 if os.path.exists(__file__): 2025-09-15T12:24:44,209 filename = __file__ 2025-09-15T12:24:44,209 with tokenize.open(__file__) as f: 2025-09-15T12:24:44,209 setup_py_code = f.read() 2025-09-15T12:24:44,209 else: 2025-09-15T12:24:44,209 filename = "" 2025-09-15T12:24:44,209 setup_py_code = "from setuptools import setup; setup()" 2025-09-15T12:24:44,209 2025-09-15T12:24:44,209 exec(compile(setup_py_code, filename, "exec")) 2025-09-15T12:24:44,209 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-qklwtf07/kssdtree_1d5d60d1e0b544bcb0d893eacb0ee5e9/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-3fwlywic[/] 2025-09-15T12:24:44,209 [bold magenta]cwd[/]: /tmp/pip-wheel-qklwtf07/kssdtree_1d5d60d1e0b544bcb0d893eacb0ee5e9/ 2025-09-15T12:24:44,209 Building wheel for kssdtree (setup.py): finished with status 'error' 2025-09-15T12:24:44,210 ERROR: Failed building wheel for kssdtree 2025-09-15T12:24:44,211 Running setup.py clean for kssdtree 2025-09-15T12:24:44,212 Running command python setup.py clean 2025-09-15T12:24:45,349 running clean 2025-09-15T12:24:45,492 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-15T12:24:45,493 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-15T12:24:45,493 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-15T12:24:45,493 'build/scripts-3.13' does not exist -- can't clean it 2025-09-15T12:24:45,494 removing 'build' 2025-09-15T12:24:45,607 Failed to build kssdtree 2025-09-15T12:24:45,608 ERROR: Failed to build one or more wheels 2025-09-15T12:24:45,609 Exception information: 2025-09-15T12:24:45,609 Traceback (most recent call last): 2025-09-15T12:24:45,609 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-15T12:24:45,609 status = _inner_run() 2025-09-15T12:24:45,609 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-15T12:24:45,609 return self.run(options, args) 2025-09-15T12:24:45,609 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-15T12:24:45,609 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-15T12:24:45,609 return func(self, options, args) 2025-09-15T12:24:45,609 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-15T12:24:45,609 raise CommandError("Failed to build one or more wheels") 2025-09-15T12:24:45,609 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-15T12:24:45,613 Removed build tracker: '/tmp/pip-build-tracker-pzku3y5r'