2025-09-15T12:31:49,770 Created temporary directory: /tmp/pip-build-tracker-955saaa3 2025-09-15T12:31:49,771 Initialized build tracking at /tmp/pip-build-tracker-955saaa3 2025-09-15T12:31:49,771 Created build tracker: /tmp/pip-build-tracker-955saaa3 2025-09-15T12:31:49,771 Entered build tracker: /tmp/pip-build-tracker-955saaa3 2025-09-15T12:31:49,771 Created temporary directory: /tmp/pip-wheel-f43ij3p8 2025-09-15T12:31:49,775 Created temporary directory: /tmp/pip-ephem-wheel-cache-l1y013wv 2025-09-15T12:31:49,832 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-15T12:31:49,835 2 location(s) to search for versions of kssdtree: 2025-09-15T12:31:49,835 * https://pypi.org/simple/kssdtree/ 2025-09-15T12:31:49,835 * https://www.piwheels.org/simple/kssdtree/ 2025-09-15T12:31:49,835 Fetching project page and analyzing links: https://pypi.org/simple/kssdtree/ 2025-09-15T12:31:49,836 Getting page https://pypi.org/simple/kssdtree/ 2025-09-15T12:31:49,837 Found index url https://pypi.org/simple/ 2025-09-15T12:31:49,912 Fetched page https://pypi.org/simple/kssdtree/ as application/vnd.pypi.simple.v1+json 2025-09-15T12:31:49,914 Found link https://files.pythonhosted.org/packages/d5/1e/9e5c5945a44bb40002d1c259f734a531999fa6e87db89fe7c7ddcfc583cc/kssdtree-1.1.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.1 2025-09-15T12:31:49,914 Found link https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.2 2025-09-15T12:31:49,915 Found link https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.3 2025-09-15T12:31:49,915 Found link https://files.pythonhosted.org/packages/20/ea/b0301924e3f7d367cbb7b8da66837dba9af2a332bf56ed35e03a33faee76/kssdtree-1.1.4.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.4 2025-09-15T12:31:49,915 Found link https://files.pythonhosted.org/packages/41/65/ed35110b84bc0dd02b9add0104f10160754d2ea0882191767d512146a884/kssdtree-1.1.6.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.6 2025-09-15T12:31:49,915 Found link https://files.pythonhosted.org/packages/cd/4b/d886cbcc573ff0969da7d9c756049925b86141e60ee6708dfbbe0644d008/kssdtree-1.1.7.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.7 2025-09-15T12:31:49,916 Found link https://files.pythonhosted.org/packages/7e/8a/a62c8adc92df69ab8cb242827ee64a3e2b6d5c89b83425785dd00605af17/kssdtree-1.1.8.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.8 2025-09-15T12:31:49,916 Found link https://files.pythonhosted.org/packages/da/db/e458cca6427752c05428d2378ccdee631d32f760174fdaba65f73125e71b/kssdtree-1.1.9.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.9 2025-09-15T12:31:49,916 Found link https://files.pythonhosted.org/packages/9d/47/017180a30e73e421372377cbe6d01c5e51a5108ea2177f20ccd7d283f8d1/kssdtree-2.0.0.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.0 2025-09-15T12:31:49,916 Found link https://files.pythonhosted.org/packages/ba/39/d443cac955912a0371c93b797311cb9ec3a8d6ee0a5d7673376d826aa6b2/kssdtree-2.0.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.1 2025-09-15T12:31:49,917 Found link https://files.pythonhosted.org/packages/2e/32/e53c0e3735cbc913b2c96b4e0e1c1005fe816a4d71b38b80cdcfb5c67fa8/kssdtree-2.0.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.2 2025-09-15T12:31:49,917 Found link https://files.pythonhosted.org/packages/c0/0f/effc10c8e76dbe3b9a35a4b4d9e65a0a889ee805e10334541c3ca7ae3b94/kssdtree-2.0.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.3 2025-09-15T12:31:49,917 Found link https://files.pythonhosted.org/packages/fc/8d/d3790baa2f2f0a01c913005b94a82dc13ef601e7015e662ccff94bb1b458/kssdtree-2.0.4.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.4 2025-09-15T12:31:49,917 Found link https://files.pythonhosted.org/packages/b5/f8/19480a4c57704944f973ebf534f9582054949cca20170a33c6f874974440/kssdtree-2.0.5.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.5 2025-09-15T12:31:49,918 Found link https://files.pythonhosted.org/packages/46/ef/2d920d5d2fceded48c7add363e04f49ae85414bcd4360e1295d6fddc4a24/kssdtree-2.0.6.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.6 2025-09-15T12:31:49,918 Found link https://files.pythonhosted.org/packages/9c/1c/c6b3f05465d145856ac992328bd59e776286a59b120254620c1dbffcf67f/kssdtree-2.0.7.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.7 2025-09-15T12:31:49,918 Found link https://files.pythonhosted.org/packages/82/9b/dac2af6572f0c4421e5ba8341dcfddac466de30c62acfa019d9ef70b2670/kssdtree-2.0.8.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.8 2025-09-15T12:31:49,919 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdtree/ 2025-09-15T12:31:49,919 Getting page https://www.piwheels.org/simple/kssdtree/ 2025-09-15T12:31:49,920 Found index url https://www.piwheels.org/simple/ 2025-09-15T12:31:50,005 Fetched page https://www.piwheels.org/simple/kssdtree/ as text/html 2025-09-15T12:31:50,017 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv6l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,017 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv7l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,017 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv6l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,018 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv7l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,018 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp311-cp311-linux_armv6l.whl#sha256=e1e02281e0fc8ed3b80b596a811ca2a9b50cb7affb3649479228d59c074c1f94 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,018 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp311-cp311-linux_armv7l.whl#sha256=e1e02281e0fc8ed3b80b596a811ca2a9b50cb7affb3649479228d59c074c1f94 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,018 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp311-cp311-linux_armv6l.whl#sha256=cecf3000ed0ffcd720412023d8de2f213356363c01aa3193441c040ed34353d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,018 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp311-cp311-linux_armv7l.whl#sha256=cecf3000ed0ffcd720412023d8de2f213356363c01aa3193441c040ed34353d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,018 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp39-cp39-linux_armv6l.whl#sha256=db08595adc89347b61965ba36e918055e8a0dc5f6a2b0bdfe16133eb363412d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,018 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp39-cp39-linux_armv7l.whl#sha256=db08595adc89347b61965ba36e918055e8a0dc5f6a2b0bdfe16133eb363412d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,019 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp311-cp311-linux_armv6l.whl#sha256=97a69f799c2d1b7024a9033b8a1e3fc17af4748a1ed726f52397d884303eb870 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,019 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp311-cp311-linux_armv7l.whl#sha256=97a69f799c2d1b7024a9033b8a1e3fc17af4748a1ed726f52397d884303eb870 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,019 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp39-cp39-linux_armv6l.whl#sha256=00938a03bead64e58bc1928832b7952b04d844e79b41da12160490c7edbb9e9f (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,019 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp39-cp39-linux_armv6l.whl#sha256=f629766f3426bb8a83c6f4adca8b02b03cb85452c129c9694cef65efd715fabd (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,019 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp39-cp39-linux_armv7l.whl#sha256=f629766f3426bb8a83c6f4adca8b02b03cb85452c129c9694cef65efd715fabd (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,020 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp311-cp311-linux_armv6l.whl#sha256=ae7417e30efd12d8c6800d4167141c94a93f1ce51afd5ae9196cdfb6057ca7d2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,020 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp311-cp311-linux_armv7l.whl#sha256=ae7417e30efd12d8c6800d4167141c94a93f1ce51afd5ae9196cdfb6057ca7d2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,020 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv6l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,020 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv7l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,020 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.1-cp311-cp311-linux_armv6l.whl#sha256=8b8c3190a5a4a010758772e9d53c3c12436541437bc9c503bec9a8f6a007cdcc (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,020 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.1-cp311-cp311-linux_armv7l.whl#sha256=8b8c3190a5a4a010758772e9d53c3c12436541437bc9c503bec9a8f6a007cdcc (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,020 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.0-cp311-cp311-linux_armv6l.whl#sha256=16a2e46376ed2874435371fd57a97405d4b631b35c014b9e395a4528a1e655b8 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,021 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv6l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,022 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv7l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,022 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp311-cp311-linux_armv6l.whl#sha256=388a8dabd657ea83e6d22b52300337c74e9d84e506806cfd4d2a76eb98777e17 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,022 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp311-cp311-linux_armv7l.whl#sha256=388a8dabd657ea83e6d22b52300337c74e9d84e506806cfd4d2a76eb98777e17 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,022 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp39-cp39-linux_armv6l.whl#sha256=e1df896451d30c12e01aceb3eb91f0f7dfe0ee6f16fd66864fdefbc21cc54856 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,023 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp39-cp39-linux_armv7l.whl#sha256=e1df896451d30c12e01aceb3eb91f0f7dfe0ee6f16fd66864fdefbc21cc54856 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,023 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv6l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,023 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv7l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,023 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv6l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,023 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv7l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,023 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv6l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,023 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv7l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,023 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,024 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,024 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,024 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,024 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,024 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,024 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv6l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,024 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv7l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,024 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,025 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,025 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,025 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,025 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,025 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,025 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,025 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,026 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv6l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,026 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv7l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,026 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,026 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,026 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,026 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T12:31:50,026 Skipping link: not a file: https://www.piwheels.org/simple/kssdtree/ 2025-09-15T12:31:50,027 Skipping link: not a file: https://pypi.org/simple/kssdtree/ 2025-09-15T12:31:50,052 Given no hashes to check 1 links for project 'kssdtree': discarding no candidates 2025-09-15T12:31:50,053 Collecting kssdtree==2.0.7 2025-09-15T12:31:50,054 Created temporary directory: /tmp/pip-unpack-fkcw9crn 2025-09-15T12:31:50,195 Downloading kssdtree-2.0.7.tar.gz (113 kB) 2025-09-15T12:31:50,296 Added kssdtree==2.0.7 from https://files.pythonhosted.org/packages/9c/1c/c6b3f05465d145856ac992328bd59e776286a59b120254620c1dbffcf67f/kssdtree-2.0.7.tar.gz to build tracker '/tmp/pip-build-tracker-955saaa3' 2025-09-15T12:31:50,297 Running setup.py (path:/tmp/pip-wheel-f43ij3p8/kssdtree_d03436abd97c4bc1a627bac7784297f6/setup.py) egg_info for package kssdtree 2025-09-15T12:31:50,297 Created temporary directory: /tmp/pip-pip-egg-info-jls6_pwk 2025-09-15T12:31:50,297 Preparing metadata (setup.py): started 2025-09-15T12:31:50,298 Running command python setup.py egg_info 2025-09-15T12:31:51,682 running egg_info 2025-09-15T12:31:51,789 creating /tmp/pip-pip-egg-info-jls6_pwk/kssdtree.egg-info 2025-09-15T12:31:51,789 writing /tmp/pip-pip-egg-info-jls6_pwk/kssdtree.egg-info/PKG-INFO 2025-09-15T12:31:51,791 writing dependency_links to /tmp/pip-pip-egg-info-jls6_pwk/kssdtree.egg-info/dependency_links.txt 2025-09-15T12:31:51,791 writing requirements to /tmp/pip-pip-egg-info-jls6_pwk/kssdtree.egg-info/requires.txt 2025-09-15T12:31:51,792 writing top-level names to /tmp/pip-pip-egg-info-jls6_pwk/kssdtree.egg-info/top_level.txt 2025-09-15T12:31:51,792 writing manifest file '/tmp/pip-pip-egg-info-jls6_pwk/kssdtree.egg-info/SOURCES.txt' 2025-09-15T12:31:52,186 reading manifest file '/tmp/pip-pip-egg-info-jls6_pwk/kssdtree.egg-info/SOURCES.txt' 2025-09-15T12:31:52,187 reading manifest template 'MANIFEST.in' 2025-09-15T12:31:52,195 writing manifest file '/tmp/pip-pip-egg-info-jls6_pwk/kssdtree.egg-info/SOURCES.txt' 2025-09-15T12:31:52,335 Preparing metadata (setup.py): finished with status 'done' 2025-09-15T12:31:52,340 Source in /tmp/pip-wheel-f43ij3p8/kssdtree_d03436abd97c4bc1a627bac7784297f6 has version 2.0.7, which satisfies requirement kssdtree==2.0.7 from https://files.pythonhosted.org/packages/9c/1c/c6b3f05465d145856ac992328bd59e776286a59b120254620c1dbffcf67f/kssdtree-2.0.7.tar.gz 2025-09-15T12:31:52,341 Removed kssdtree==2.0.7 from https://files.pythonhosted.org/packages/9c/1c/c6b3f05465d145856ac992328bd59e776286a59b120254620c1dbffcf67f/kssdtree-2.0.7.tar.gz from build tracker '/tmp/pip-build-tracker-955saaa3' 2025-09-15T12:31:52,345 Created temporary directory: /tmp/pip-unpack-50qm65i7 2025-09-15T12:31:52,345 Created temporary directory: /tmp/pip-unpack-971tsgas 2025-09-15T12:31:52,345 Building wheels for collected packages: kssdtree 2025-09-15T12:31:52,347 Created temporary directory: /tmp/pip-wheel-4eik1o9_ 2025-09-15T12:31:52,347 DEPRECATION: Building 'kssdtree' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'kssdtree'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-15T12:31:52,348 Building wheel for kssdtree (setup.py): started 2025-09-15T12:31:52,349 Destination directory: /tmp/pip-wheel-4eik1o9_ 2025-09-15T12:31:52,349 Running command python setup.py bdist_wheel 2025-09-15T12:31:53,641 running bdist_wheel 2025-09-15T12:31:54,123 running build 2025-09-15T12:31:54,123 running build_py 2025-09-15T12:31:54,233 creating build/lib.linux-armv7l-cpython-313 2025-09-15T12:31:54,234 copying kssdtree.py -> build/lib.linux-armv7l-cpython-313 2025-09-15T12:31:54,235 copying toolutils.py -> build/lib.linux-armv7l-cpython-313 2025-09-15T12:31:54,235 running egg_info 2025-09-15T12:31:54,332 writing kssdtree.egg-info/PKG-INFO 2025-09-15T12:31:54,333 writing dependency_links to kssdtree.egg-info/dependency_links.txt 2025-09-15T12:31:54,334 writing requirements to kssdtree.egg-info/requires.txt 2025-09-15T12:31:54,334 writing top-level names to kssdtree.egg-info/top_level.txt 2025-09-15T12:31:54,434 reading manifest file 'kssdtree.egg-info/SOURCES.txt' 2025-09-15T12:31:54,440 reading manifest template 'MANIFEST.in' 2025-09-15T12:31:54,448 writing manifest file 'kssdtree.egg-info/SOURCES.txt' 2025-09-15T12:31:54,449 running build_ext 2025-09-15T12:31:54,830 building 'kssd' extension 2025-09-15T12:31:54,832 creating build/temp.linux-armv7l-cpython-313 2025-09-15T12:31:54,834 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c co2mco.c -o build/temp.linux-armv7l-cpython-313/co2mco.o -fopenmp 2025-09-15T12:31:55,026 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2025-09-15T12:31:55,026 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-15T12:31:55,026 109 | for (unsigned int i = 0; i < comp_num; i++) { 2025-09-15T12:31:55,026 | ^ 2025-09-15T12:31:55,030 co2mco.c: In function ‘co2unitllmco’: 2025-09-15T12:31:55,031 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-15T12:31:55,031 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2025-09-15T12:31:55,031 | ^ 2025-09-15T12:31:55,886 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_composite.c -o build/temp.linux-armv7l-cpython-313/command_composite.o -fopenmp 2025-09-15T12:31:56,341 command_composite.c: In function ‘get_species_abundance’: 2025-09-15T12:31:56,341 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-15T12:31:56,341 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2025-09-15T12:31:56,341 | ^~ 2025-09-15T12:31:56,341 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-15T12:31:56,342 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2025-09-15T12:31:56,342 | ^~ 2025-09-15T12:31:56,342 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:31:56,342 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-15T12:31:56,342 | ^ 2025-09-15T12:31:56,342 command_composite.c:64:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:31:56,342 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-15T12:31:56,342 | ^~~~~~~~~~ 2025-09-15T12:31:56,343 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-15T12:31:56,343 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-15T12:31:56,343 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:56,343 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:31:56,343 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-15T12:31:56,343 | ^ 2025-09-15T12:31:56,343 command_composite.c:70:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:31:56,343 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-15T12:31:56,343 | ^~~~~~~~~~ 2025-09-15T12:31:56,344 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-15T12:31:56,344 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-15T12:31:56,344 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:56,344 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:31:56,344 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-15T12:31:56,344 | ^ 2025-09-15T12:31:56,344 command_composite.c:76:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:31:56,344 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-15T12:31:56,345 | ^~~~~~~~~~ 2025-09-15T12:31:56,345 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-15T12:31:56,345 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-15T12:31:56,345 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:56,345 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:31:56,345 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-15T12:31:56,345 | ^ 2025-09-15T12:31:56,345 command_composite.c:82:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:31:56,346 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-15T12:31:56,346 | ^~~~~~~~~~ 2025-09-15T12:31:56,346 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-15T12:31:56,346 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-15T12:31:56,346 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:56,346 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:31:56,346 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-15T12:31:56,346 | ^ 2025-09-15T12:31:56,347 command_composite.c:88:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:31:56,347 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-15T12:31:56,347 | ^~~~~~~~~~~~ 2025-09-15T12:31:56,347 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2025-09-15T12:31:56,347 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-15T12:31:56,347 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:56,653 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist.c -o build/temp.linux-armv7l-cpython-313/command_dist.o -fopenmp 2025-09-15T12:31:56,900 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-15T12:31:56,902 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T12:31:56,902 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-15T12:31:56,902 | ~~^ 2025-09-15T12:31:56,902 | | 2025-09-15T12:31:56,902 | long unsigned int 2025-09-15T12:31:56,902 | %u 2025-09-15T12:31:56,902 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-15T12:31:56,903 | ~~~~~~~ 2025-09-15T12:31:56,903 | | 2025-09-15T12:31:56,903 | size_t {aka unsigned int} 2025-09-15T12:31:56,905 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T12:31:56,905 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-15T12:31:56,905 | ~~^ 2025-09-15T12:31:56,905 | | 2025-09-15T12:31:56,905 | long unsigned int 2025-09-15T12:31:56,906 | %u 2025-09-15T12:31:56,906 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-15T12:31:56,906 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-15T12:31:56,906 | ~~~~~~~~~ 2025-09-15T12:31:56,906 | | 2025-09-15T12:31:56,906 | size_t {aka unsigned int} 2025-09-15T12:31:56,908 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-15T12:31:56,908 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-15T12:31:56,908 | ~~^ 2025-09-15T12:31:56,909 | | 2025-09-15T12:31:56,909 | long unsigned int 2025-09-15T12:31:56,909 | %u 2025-09-15T12:31:56,909 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-15T12:31:56,909 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-15T12:31:56,909 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:56,909 | | 2025-09-15T12:31:56,909 | unsigned int 2025-09-15T12:31:56,913 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-15T12:31:56,913 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2025-09-15T12:31:56,913 | ^ 2025-09-15T12:31:56,922 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-15T12:31:56,924 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T12:31:56,924 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-15T12:31:56,924 | ~~^ ~~~~~~~ 2025-09-15T12:31:56,924 | | | 2025-09-15T12:31:56,925 | long unsigned int size_t {aka unsigned int} 2025-09-15T12:31:56,925 | %u 2025-09-15T12:31:56,927 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T12:31:56,928 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-15T12:31:56,928 | ~~^ 2025-09-15T12:31:56,928 | | 2025-09-15T12:31:56,928 | long unsigned int 2025-09-15T12:31:56,928 | %u 2025-09-15T12:31:56,928 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-15T12:31:56,928 | ~~~~~~~~~ 2025-09-15T12:31:56,928 | | 2025-09-15T12:31:56,928 | size_t {aka unsigned int} 2025-09-15T12:31:56,931 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-15T12:31:56,931 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-15T12:31:56,931 | ~~^ 2025-09-15T12:31:56,932 | | 2025-09-15T12:31:56,932 | long unsigned int 2025-09-15T12:31:56,932 | %u 2025-09-15T12:31:56,932 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-15T12:31:56,932 865 | (size_t) b * unitsz_distf_mapped); 2025-09-15T12:31:56,932 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:56,932 | | 2025-09-15T12:31:56,932 | unsigned int 2025-09-15T12:31:56,935 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2025-09-15T12:31:56,936 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2025-09-15T12:31:56,936 | ^~~~~~~ 2025-09-15T12:31:56,937 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2025-09-15T12:31:56,937 809 | struct stat cbd_fcode_stat; 2025-09-15T12:31:56,937 | ^~~~~~~~~~~~~~ 2025-09-15T12:31:56,938 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2025-09-15T12:31:56,939 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-15T12:31:56,939 | ^~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:56,940 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2025-09-15T12:31:56,940 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-15T12:31:56,940 | ^~~~~~~~~~~~~~~~~ 2025-09-15T12:31:56,948 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-15T12:31:56,951 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T12:31:56,951 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-15T12:31:56,951 | ~~^ 2025-09-15T12:31:56,951 | | 2025-09-15T12:31:56,951 | long unsigned int 2025-09-15T12:31:56,952 | %u 2025-09-15T12:31:56,952 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-15T12:31:56,952 | ~~~~~~~ 2025-09-15T12:31:56,952 | | 2025-09-15T12:31:56,952 | size_t {aka unsigned int} 2025-09-15T12:31:56,955 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T12:31:56,955 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-15T12:31:56,955 | ~~^ 2025-09-15T12:31:56,956 | | 2025-09-15T12:31:56,956 | long unsigned int 2025-09-15T12:31:56,956 | %u 2025-09-15T12:31:56,956 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-15T12:31:56,956 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-15T12:31:56,956 | ~~~~~~~~~ 2025-09-15T12:31:56,956 | | 2025-09-15T12:31:56,956 | size_t {aka unsigned int} 2025-09-15T12:31:56,959 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-15T12:31:56,960 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-15T12:31:56,960 | ~~^ 2025-09-15T12:31:56,960 | | 2025-09-15T12:31:56,960 | long unsigned int 2025-09-15T12:31:56,960 | %u 2025-09-15T12:31:56,960 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-15T12:31:56,960 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-15T12:31:56,960 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:56,960 | | 2025-09-15T12:31:56,960 | unsigned int 2025-09-15T12:31:56,967 command_dist.c: In function ‘mco_co_dist_core’: 2025-09-15T12:31:56,969 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-15T12:31:56,969 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2025-09-15T12:31:56,969 | ^ 2025-09-15T12:31:56,971 command_dist.c: In function ‘fname_dist_print’: 2025-09-15T12:31:56,972 command_dist.c:1163:25: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘__off64_t’ {aka ‘long long int’} [-Wsign-compare] 2025-09-15T12:31:56,973 1163 | for (llong i = 0; i < s.st_size / sizeof(ctx_obj_ct_t); i++) { 2025-09-15T12:31:56,973 | ^ 2025-09-15T12:31:56,979 command_dist.c: In function ‘koc_dist_print_nobin’: 2025-09-15T12:31:56,980 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T12:31:56,981 1239 | for (int rid = 0; rid < ref_num; rid++) 2025-09-15T12:31:56,981 | ^ 2025-09-15T12:31:56,984 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T12:31:56,984 1245 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-15T12:31:56,984 | ^ 2025-09-15T12:31:56,991 command_dist.c: In function ‘dist_print_nobin’: 2025-09-15T12:31:56,993 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T12:31:56,993 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2025-09-15T12:31:56,993 | ^ 2025-09-15T12:31:56,996 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T12:31:56,997 1356 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-15T12:31:56,997 | ^ 2025-09-15T12:31:57,000 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T12:31:57,000 1382 | for (int rid = 0; rid < ref_num; rid++) 2025-09-15T12:31:57,000 | ^ 2025-09-15T12:31:57,442 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2025-09-15T12:31:57,443 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2025-09-15T12:31:57,443 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2025-09-15T12:31:57,443 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:57,444 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2025-09-15T12:31:57,444 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2025-09-15T12:31:57,444 | ^~~~~~~~~~~~ 2025-09-15T12:31:58,348 command_dist.c: In function ‘get_dim_shuffle’: 2025-09-15T12:31:58,349 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2025-09-15T12:31:58,349 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-15T12:31:58,350 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:58,350 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2025-09-15T12:31:58,350 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-15T12:31:58,350 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:59,385 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-15T12:31:59,386 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:31:59,387 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-15T12:31:59,387 | ^~ ~~~~~~~~~ 2025-09-15T12:31:59,388 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-15T12:31:59,388 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-15T12:31:59,388 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:59,389 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T12:31:59,390 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-15T12:31:59,390 | ^~~~~~~~~~~~~~~ 2025-09-15T12:31:59,391 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-15T12:31:59,391 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-15T12:31:59,391 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:59,394 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T12:31:59,394 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-15T12:31:59,394 | ^~~~~~~~~~~ 2025-09-15T12:31:59,395 command_dist.c:681:38: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:31:59,395 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-15T12:31:59,395 | ^~~~~~~~~~~~~~~~~ 2025-09-15T12:31:59,397 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-15T12:31:59,397 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-15T12:31:59,397 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:59,398 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T12:31:59,398 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-15T12:31:59,398 | ^~~~~ 2025-09-15T12:31:59,399 command_dist.c:682:32: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:31:59,400 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-15T12:31:59,400 | ^~~~~~~~~~~ 2025-09-15T12:31:59,401 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-15T12:31:59,401 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-15T12:31:59,401 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:59,680 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-15T12:31:59,681 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:31:59,682 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-15T12:31:59,682 | ^~ ~~~~~~~~~ 2025-09-15T12:31:59,683 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-15T12:31:59,683 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-15T12:31:59,683 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:59,685 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T12:31:59,685 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-15T12:31:59,685 | ^~~~~~~~~~~~~~~ 2025-09-15T12:31:59,686 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-15T12:31:59,686 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-15T12:31:59,687 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:59,688 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T12:31:59,688 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-15T12:31:59,688 | ^~~~~~~~~~~~~ 2025-09-15T12:31:59,690 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-15T12:31:59,690 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-15T12:31:59,690 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:59,692 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:31:59,692 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-15T12:31:59,692 | ^ 2025-09-15T12:31:59,693 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2025-09-15T12:31:59,694 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-15T12:31:59,694 | ^~~~~~~~~~ 2025-09-15T12:31:59,695 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-15T12:31:59,695 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-15T12:31:59,695 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:59,697 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:31:59,697 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-15T12:31:59,697 | ^ 2025-09-15T12:31:59,698 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2025-09-15T12:31:59,699 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-15T12:31:59,699 | ^~~~~~~~~~ 2025-09-15T12:31:59,700 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-15T12:31:59,700 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-15T12:31:59,700 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:31:59,999 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-15T12:32:00,001 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:00,001 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-15T12:32:00,001 | ^~ ~~~~~~~~~ 2025-09-15T12:32:00,002 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-15T12:32:00,003 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-15T12:32:00,003 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:00,004 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T12:32:00,005 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-15T12:32:00,005 | ^~~~~~~~~~~~~~~ 2025-09-15T12:32:00,006 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-15T12:32:00,006 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-15T12:32:00,007 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:00,008 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T12:32:00,009 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-15T12:32:00,009 | ^~~~~~~~~~~~~ 2025-09-15T12:32:00,010 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-15T12:32:00,010 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-15T12:32:00,010 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:00,013 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T12:32:00,013 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-15T12:32:00,013 | ^~~~~~~~~~~ 2025-09-15T12:32:00,015 command_dist.c:1022:38: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:00,015 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-15T12:32:00,016 | ^~~~~~~~~~~~~~~~~ 2025-09-15T12:32:00,017 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-15T12:32:00,017 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-15T12:32:00,017 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:00,019 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T12:32:00,019 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-15T12:32:00,019 | ^~~~~ 2025-09-15T12:32:00,021 command_dist.c:1023:32: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:00,021 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-15T12:32:00,021 | ^~~~~~~~~~~ 2025-09-15T12:32:00,023 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-15T12:32:00,023 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-15T12:32:00,023 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:00,335 command_dist.c: In function ‘combine_queries’: 2025-09-15T12:32:00,338 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T12:32:00,338 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-15T12:32:00,338 | ^ 2025-09-15T12:32:00,340 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T12:32:00,340 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-15T12:32:00,341 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:00,343 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T12:32:00,343 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-15T12:32:00,343 | ^ 2025-09-15T12:32:00,345 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T12:32:00,345 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-15T12:32:00,346 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:00,349 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:00,350 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-15T12:32:00,350 | ^~ ~~~~~~~~ 2025-09-15T12:32:00,352 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-15T12:32:00,352 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-15T12:32:00,352 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:00,899 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-313/command_dist_wrapper.o -fopenmp 2025-09-15T12:32:01,091 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_set.c -o build/temp.linux-armv7l-cpython-313/command_set.o -fopenmp 2025-09-15T12:32:01,275 command_set.c: In function ‘sketch_operate’: 2025-09-15T12:32:01,276 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-15T12:32:01,276 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2025-09-15T12:32:01,276 | ^ 2025-09-15T12:32:01,291 command_set.c: In function ‘combin_subset_pans’: 2025-09-15T12:32:01,292 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-15T12:32:01,292 457 | free(co_dstat_fpath); 2025-09-15T12:32:01,292 | ^~~~~~~~~~~~~~ 2025-09-15T12:32:01,293 In file included from kssdheaders/global_basic.h:159, 2025-09-15T12:32:01,293 from command_set.c:15: 2025-09-15T12:32:01,293 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-15T12:32:01,293 687 | extern void free (void *__ptr) __THROW; 2025-09-15T12:32:01,293 | ~~~~~~^~~~~ 2025-09-15T12:32:01,301 command_set.c: In function ‘grouping_genomes’: 2025-09-15T12:32:01,302 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-15T12:32:01,302 562 | free(co_dstat_fpath); 2025-09-15T12:32:01,302 | ^~~~~~~~~~~~~~ 2025-09-15T12:32:01,302 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-15T12:32:01,302 687 | extern void free (void *__ptr) __THROW; 2025-09-15T12:32:01,303 | ~~~~~~^~~~~ 2025-09-15T12:32:01,516 command_set.c: In function ‘sketch_union’: 2025-09-15T12:32:01,516 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T12:32:01,516 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:32:01,516 | ^ 2025-09-15T12:32:01,517 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T12:32:01,517 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:32:01,517 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:01,517 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:01,517 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-15T12:32:01,517 | ^~ ~~~~~~~~~~~ 2025-09-15T12:32:01,518 command_set.c:82:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:01,518 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-15T12:32:01,518 | ^~~~~~~~~~ 2025-09-15T12:32:01,519 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T12:32:01,519 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-15T12:32:01,519 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:01,519 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:01,519 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-15T12:32:01,520 | ^~ ~~~~~~~~~~ 2025-09-15T12:32:01,520 command_set.c:92:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:01,520 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-15T12:32:01,520 | ^~~~~~~~~~ 2025-09-15T12:32:01,520 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-15T12:32:01,521 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-15T12:32:01,521 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:01,669 command_set.c: In function ‘sketch_operate’: 2025-09-15T12:32:01,670 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:01,670 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-15T12:32:01,670 | ^~ ~~~~~~~~~~ 2025-09-15T12:32:01,670 command_set.c:153:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:01,671 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-15T12:32:01,671 | ^~~~~~~~~~ 2025-09-15T12:32:01,671 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-15T12:32:01,671 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-15T12:32:01,671 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:01,672 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:01,672 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-15T12:32:01,672 | ^~ ~~~~~~~~~~~~~~~ 2025-09-15T12:32:01,673 command_set.c:155:29: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:01,673 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-15T12:32:01,673 | ^~~~~~~~~~ 2025-09-15T12:32:01,673 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-15T12:32:01,673 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-15T12:32:01,673 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:01,674 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:01,674 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-15T12:32:01,674 | ^~ ~~~~~~~~~~~ 2025-09-15T12:32:01,675 command_set.c:165:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:01,675 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-15T12:32:01,675 | ^~~~~~~~~~~~~~~~ 2025-09-15T12:32:01,675 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-15T12:32:01,676 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-15T12:32:01,676 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:01,676 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:01,676 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-15T12:32:01,677 | ^~ ~~~~~~~~~~~ 2025-09-15T12:32:01,677 command_set.c:169:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:01,677 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-15T12:32:01,677 | ^~~~~~~~~~ 2025-09-15T12:32:01,678 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T12:32:01,678 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-15T12:32:01,678 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:01,679 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:01,679 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-15T12:32:01,679 | ^~ ~~~~~~~~~~~ 2025-09-15T12:32:01,679 command_set.c:174:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:01,679 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-15T12:32:01,679 | ^~~~~~~~~~ 2025-09-15T12:32:01,680 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T12:32:01,680 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-15T12:32:01,680 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:01,681 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:01,681 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-15T12:32:01,681 | ^~ ~~~~~~~~~~~ 2025-09-15T12:32:01,682 command_set.c:187:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:01,682 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-15T12:32:01,682 | ^~~~~~~~~~~~~~~~ 2025-09-15T12:32:01,682 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-15T12:32:01,682 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-15T12:32:01,682 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:01,683 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T12:32:01,683 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:32:01,683 | ^ 2025-09-15T12:32:01,684 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T12:32:01,684 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:32:01,684 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:01,874 command_set.c: In function ‘uniq_sketch_union’: 2025-09-15T12:32:01,875 command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T12:32:01,875 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-09-15T12:32:01,875 | ^ 2025-09-15T12:32:01,875 command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2025-09-15T12:32:01,876 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-09-15T12:32:01,876 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:01,876 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T12:32:01,877 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:32:01,877 | ^ 2025-09-15T12:32:01,877 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T12:32:01,877 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:32:01,877 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:01,878 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:01,878 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-15T12:32:01,879 | ^~ ~~~~~~~~~~~ 2025-09-15T12:32:01,879 command_set.c:247:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:01,879 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-15T12:32:01,880 | ^~~~~~~~~~ 2025-09-15T12:32:01,880 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T12:32:01,880 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-15T12:32:01,880 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:01,881 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:01,881 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-15T12:32:01,881 | ^~ ~~~~~~~~~~~~~~~ 2025-09-15T12:32:01,882 command_set.c:259:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:01,882 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-15T12:32:01,882 | ^~~~~~~~~~ 2025-09-15T12:32:01,883 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-15T12:32:01,883 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-15T12:32:01,883 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:02,042 command_set.c: In function ‘combin_pans’: 2025-09-15T12:32:02,043 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:02,043 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T12:32:02,043 | ^~ ~~~~~~~~~~~ 2025-09-15T12:32:02,044 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2025-09-15T12:32:02,044 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T12:32:02,045 | ^~~~~~~~~~ 2025-09-15T12:32:02,045 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2025-09-15T12:32:02,045 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T12:32:02,045 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:02,046 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:02,046 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T12:32:02,047 | ^~ ~~~~~~~~~~ 2025-09-15T12:32:02,047 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2025-09-15T12:32:02,047 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T12:32:02,047 | ^~~~~~~~~~ 2025-09-15T12:32:02,048 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2025-09-15T12:32:02,048 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T12:32:02,048 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:02,049 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T12:32:02,050 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:32:02,050 | ^ 2025-09-15T12:32:02,050 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T12:32:02,051 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:32:02,051 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:02,296 command_set.c: In function ‘combin_subset_pans’: 2025-09-15T12:32:02,297 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:02,298 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-15T12:32:02,298 | ^~ ~~~~~~~~~~~ 2025-09-15T12:32:02,299 command_set.c:469:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:02,299 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-15T12:32:02,299 | ^~~~~~~~~~ 2025-09-15T12:32:02,300 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T12:32:02,300 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-15T12:32:02,300 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:02,301 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:02,302 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-15T12:32:02,302 | ^~ ~~~~~~~~~~ 2025-09-15T12:32:02,303 command_set.c:475:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:02,303 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-15T12:32:02,303 | ^~~~~~~~~~ 2025-09-15T12:32:02,304 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-15T12:32:02,304 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-15T12:32:02,304 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:02,305 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:02,305 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T12:32:02,305 | ^~ ~~~~~~~~~~~ 2025-09-15T12:32:02,306 command_set.c:481:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:02,306 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T12:32:02,307 | ^~~~~~~~~~ 2025-09-15T12:32:02,307 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T12:32:02,308 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T12:32:02,308 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:02,309 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:02,309 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T12:32:02,309 | ^~ ~~~~~~~~~~ 2025-09-15T12:32:02,310 command_set.c:512:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:02,310 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T12:32:02,311 | ^~~~~~~~~~ 2025-09-15T12:32:02,311 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-15T12:32:02,312 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T12:32:02,312 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:02,313 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T12:32:02,313 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:32:02,313 | ^ 2025-09-15T12:32:02,314 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T12:32:02,314 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:32:02,314 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:02,582 command_set.c: In function ‘grouping_genomes’: 2025-09-15T12:32:02,583 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:02,584 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-15T12:32:02,584 | ^~ ~~~~~~~~~~~ 2025-09-15T12:32:02,585 command_set.c:574:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:02,585 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-15T12:32:02,585 | ^~~~~~~~~~ 2025-09-15T12:32:02,586 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T12:32:02,586 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-15T12:32:02,587 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:02,588 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:02,588 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-15T12:32:02,588 | ^~ ~~~~~~~~~~ 2025-09-15T12:32:02,589 command_set.c:580:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:02,589 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-15T12:32:02,589 | ^~~~~~~~~~ 2025-09-15T12:32:02,590 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-15T12:32:02,591 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-15T12:32:02,591 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:02,592 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:02,593 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T12:32:02,593 | ^~ ~~~~~~~~~~~ 2025-09-15T12:32:02,594 command_set.c:612:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:02,594 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T12:32:02,594 | ^~~~~~~~~~ 2025-09-15T12:32:02,595 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T12:32:02,595 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T12:32:02,595 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:02,597 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T12:32:02,597 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T12:32:02,597 | ^~ ~~~~~~~~~~ 2025-09-15T12:32:02,598 command_set.c:634:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-15T12:32:02,599 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T12:32:02,599 | ^~~~~~~~~~ 2025-09-15T12:32:02,600 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-15T12:32:02,600 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T12:32:02,600 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:02,601 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T12:32:02,601 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:32:02,601 | ^ 2025-09-15T12:32:02,603 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T12:32:02,603 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T12:32:02,603 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T12:32:02,916 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-313/command_shuffle.o -fopenmp 2025-09-15T12:32:03,276 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c global_basic.c -o build/temp.linux-armv7l-cpython-313/global_basic.o -fopenmp 2025-09-15T12:32:03,462 global_basic.c: In function ‘organize_infile_list’: 2025-09-15T12:32:03,462 global_basic.c:195:20: error: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2025-09-15T12:32:03,462 195 | while (isspace(*buf)) buf++; 2025-09-15T12:32:03,463 | ^~~~~~~ 2025-09-15T12:32:03,463 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2025-09-15T12:32:03,463 34 | #include 2025-09-15T12:32:03,463 +++ |+#include 2025-09-15T12:32:03,463 35 | 2025-09-15T12:32:03,463 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T12:32:03,464 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-15T12:32:03,464 | ~~^ 2025-09-15T12:32:03,464 | | 2025-09-15T12:32:03,464 | long unsigned int 2025-09-15T12:32:03,464 | %u 2025-09-15T12:32:03,464 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-15T12:32:03,464 | ~~~~~~~~~~~ 2025-09-15T12:32:03,464 | | 2025-09-15T12:32:03,465 | size_t {aka unsigned int} 2025-09-15T12:32:03,465 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T12:32:03,466 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-15T12:32:03,466 | ~~^ 2025-09-15T12:32:03,466 | | 2025-09-15T12:32:03,466 | long unsigned int 2025-09-15T12:32:03,466 | %u 2025-09-15T12:32:03,466 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-15T12:32:03,467 | ~~~~~~~~~~~ 2025-09-15T12:32:03,467 | | 2025-09-15T12:32:03,467 | size_t {aka unsigned int} 2025-09-15T12:32:03,491 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-15T12:32:03,669 ERROR: python setup.py bdist_wheel exited with 1 2025-09-15T12:32:03,683 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-15T12:32:03,683 exec(compile('"'"''"'"''"'"' 2025-09-15T12:32:03,683 # This is -- a caller that pip uses to run setup.py 2025-09-15T12:32:03,683 # 2025-09-15T12:32:03,683 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-15T12:32:03,683 # import from `distutils.core` to work with newer packaging standards. 2025-09-15T12:32:03,683 # - It provides a clear error message when setuptools is not installed. 2025-09-15T12:32:03,683 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-15T12:32:03,683 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-15T12:32:03,683 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-15T12:32:03,683 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-15T12:32:03,683 import os, sys, tokenize, traceback 2025-09-15T12:32:03,683 2025-09-15T12:32:03,683 try: 2025-09-15T12:32:03,683 import setuptools 2025-09-15T12:32:03,683 except ImportError: 2025-09-15T12:32:03,683 print( 2025-09-15T12:32:03,683 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-15T12:32:03,683 "the build environment with exception:", 2025-09-15T12:32:03,683 file=sys.stderr, 2025-09-15T12:32:03,683 ) 2025-09-15T12:32:03,683 traceback.print_exc() 2025-09-15T12:32:03,683 sys.exit(1) 2025-09-15T12:32:03,683 2025-09-15T12:32:03,683 __file__ = %r 2025-09-15T12:32:03,683 sys.argv[0] = __file__ 2025-09-15T12:32:03,683 2025-09-15T12:32:03,683 if os.path.exists(__file__): 2025-09-15T12:32:03,683 filename = __file__ 2025-09-15T12:32:03,683 with tokenize.open(__file__) as f: 2025-09-15T12:32:03,683 setup_py_code = f.read() 2025-09-15T12:32:03,683 else: 2025-09-15T12:32:03,683 filename = "" 2025-09-15T12:32:03,683 setup_py_code = "from setuptools import setup; setup()" 2025-09-15T12:32:03,683 2025-09-15T12:32:03,683 exec(compile(setup_py_code, filename, "exec")) 2025-09-15T12:32:03,683 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-f43ij3p8/kssdtree_d03436abd97c4bc1a627bac7784297f6/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-4eik1o9_[/] 2025-09-15T12:32:03,683 [bold magenta]cwd[/]: /tmp/pip-wheel-f43ij3p8/kssdtree_d03436abd97c4bc1a627bac7784297f6/ 2025-09-15T12:32:03,683 Building wheel for kssdtree (setup.py): finished with status 'error' 2025-09-15T12:32:03,684 ERROR: Failed building wheel for kssdtree 2025-09-15T12:32:03,685 Running setup.py clean for kssdtree 2025-09-15T12:32:03,686 Running command python setup.py clean 2025-09-15T12:32:05,111 running clean 2025-09-15T12:32:05,303 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-15T12:32:05,304 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-15T12:32:05,304 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-15T12:32:05,304 'build/scripts-3.13' does not exist -- can't clean it 2025-09-15T12:32:05,304 removing 'build' 2025-09-15T12:32:05,443 Failed to build kssdtree 2025-09-15T12:32:05,444 ERROR: Failed to build one or more wheels 2025-09-15T12:32:05,445 Exception information: 2025-09-15T12:32:05,445 Traceback (most recent call last): 2025-09-15T12:32:05,445 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-15T12:32:05,445 status = _inner_run() 2025-09-15T12:32:05,445 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-15T12:32:05,445 return self.run(options, args) 2025-09-15T12:32:05,445 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-15T12:32:05,445 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-15T12:32:05,445 return func(self, options, args) 2025-09-15T12:32:05,445 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-15T12:32:05,445 raise CommandError("Failed to build one or more wheels") 2025-09-15T12:32:05,445 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-15T12:32:05,450 Removed build tracker: '/tmp/pip-build-tracker-955saaa3'