2025-09-15T18:02:57,316 Created temporary directory: /tmp/pip-build-tracker-f8e26flj
2025-09-15T18:02:57,317 Initialized build tracking at /tmp/pip-build-tracker-f8e26flj
2025-09-15T18:02:57,317 Created build tracker: /tmp/pip-build-tracker-f8e26flj
2025-09-15T18:02:57,318 Entered build tracker: /tmp/pip-build-tracker-f8e26flj
2025-09-15T18:02:57,318 Created temporary directory: /tmp/pip-wheel-3p1kgkxk
2025-09-15T18:02:57,322 Created temporary directory: /tmp/pip-ephem-wheel-cache-hh4qvji9
2025-09-15T18:02:57,370 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-15T18:02:57,373 2 location(s) to search for versions of nanorepeat:
2025-09-15T18:02:57,373 * https://pypi.org/simple/nanorepeat/
2025-09-15T18:02:57,373 * https://www.piwheels.org/simple/nanorepeat/
2025-09-15T18:02:57,373 Fetching project page and analyzing links: https://pypi.org/simple/nanorepeat/
2025-09-15T18:02:57,374 Getting page https://pypi.org/simple/nanorepeat/
2025-09-15T18:02:57,376 Found index url https://pypi.org/simple/
2025-09-15T18:02:57,597 Fetched page https://pypi.org/simple/nanorepeat/ as application/vnd.pypi.simple.v1+json
2025-09-15T18:02:57,600   Found link https://files.pythonhosted.org/packages/a9/45/b44d8d9e27f452f52abf83f4605db71cbf5adc1ac985b3d1425ed0d93cbb/NanoRepeat-1.4.0.tar.gz (from https://pypi.org/simple/nanorepeat/), version: 1.4.0
2025-09-15T18:02:57,600   Found link https://files.pythonhosted.org/packages/03/15/1203ded625a2b22e734e09ac99e1afdc04bbc57aef0b95d4d51d64fcf1f7/NanoRepeat-1.4.1.tar.gz (from https://pypi.org/simple/nanorepeat/), version: 1.4.1
2025-09-15T18:02:57,601   Found link https://files.pythonhosted.org/packages/1a/28/95e5c31fb61862d25da8b236ecd150906de8c2a77ca3640a76241ec4471c/NanoRepeat-1.5.tar.gz (from https://pypi.org/simple/nanorepeat/), version: 1.5
2025-09-15T18:02:57,602   Skipping link: No binaries permitted for nanorepeat: https://files.pythonhosted.org/packages/35/45/dc337380f158efc49f3bf32b436778f9a41b6f3233da87a407eaa8e813ff/NanoRepeat-1.6-py3-none-any.whl (from https://pypi.org/simple/nanorepeat/)
2025-09-15T18:02:57,602   Found link https://files.pythonhosted.org/packages/3e/0c/2f8d0ea1d679f279c6d7fc396c40fa2c8473339f371ae5772a074f9e0d82/NanoRepeat-1.6.tar.gz (from https://pypi.org/simple/nanorepeat/), version: 1.6
2025-09-15T18:02:57,603   Skipping link: No binaries permitted for nanorepeat: https://files.pythonhosted.org/packages/11/a5/84714f509032087c32cf3b62f6ccb0303e493389f717d4d385e2096f54c4/NanoRepeat-1.7-py3-none-any.whl (from https://pypi.org/simple/nanorepeat/)
2025-09-15T18:02:57,603   Found link https://files.pythonhosted.org/packages/e9/62/0fa7669334b805f319b3fb4b80cc593a174681289171ffe9182fc37c7e96/NanoRepeat-1.7.tar.gz (from https://pypi.org/simple/nanorepeat/), version: 1.7
2025-09-15T18:02:57,604   Skipping link: No binaries permitted for nanorepeat: https://files.pythonhosted.org/packages/27/7d/21c220097dc1a7128ea4264d5508bc6995e47bd0c9ab4f25bba1843343ff/NanoRepeat-1.8-py3-none-any.whl (from https://pypi.org/simple/nanorepeat/)
2025-09-15T18:02:57,605   Found link https://files.pythonhosted.org/packages/90/32/3688c8130038a4d0853d6d1d7f0819bbde443b73810ba2d7df0a19eda84b/NanoRepeat-1.8.tar.gz (from https://pypi.org/simple/nanorepeat/), version: 1.8
2025-09-15T18:02:57,605   Skipping link: No binaries permitted for nanorepeat: https://files.pythonhosted.org/packages/39/ec/b6f95d9f0d707f7cba52862814d22af1c3f12bceccba86014a642055e940/NanoRepeat-1.8.1-py3-none-any.whl (from https://pypi.org/simple/nanorepeat/)
2025-09-15T18:02:57,606   Found link https://files.pythonhosted.org/packages/6b/27/6624f6c8aa5df9252718b0aa6da5cc89213694fa5cd8f7c9cc86b01083ff/nanorepeat-1.8.1.tar.gz (from https://pypi.org/simple/nanorepeat/), version: 1.8.1
2025-09-15T18:02:57,606   Skipping link: No binaries permitted for nanorepeat: https://files.pythonhosted.org/packages/b6/50/e44364229d6898094a65a99196d004ed0d6c3191c2d4d4d82d3af5ba7454/NanoRepeat-1.8.2-py3-none-any.whl (from https://pypi.org/simple/nanorepeat/)
2025-09-15T18:02:57,607   Found link https://files.pythonhosted.org/packages/42/e5/314abc79f4f9fec166a604fed146f87068d6a126cc368be186176aa40bee/nanorepeat-1.8.2.tar.gz (from https://pypi.org/simple/nanorepeat/), version: 1.8.2
2025-09-15T18:02:57,608 Fetching project page and analyzing links: https://www.piwheels.org/simple/nanorepeat/
2025-09-15T18:02:57,609 Getting page https://www.piwheels.org/simple/nanorepeat/
2025-09-15T18:02:57,610 Found index url https://www.piwheels.org/simple/
2025-09-15T18:02:57,781 Fetched page https://www.piwheels.org/simple/nanorepeat/ as text/html
2025-09-15T18:02:57,784   Skipping link: No binaries permitted for nanorepeat: https://archive1.piwheels.org/simple/nanorepeat/NanoRepeat-1.8.1-py3-none-any.whl#sha256=6248a6e355a6ca0de293ca77863372bfd8c2e39d2054432d1d64c98836e9a208 (from https://www.piwheels.org/simple/nanorepeat/)
2025-09-15T18:02:57,784   Skipping link: No binaries permitted for nanorepeat: https://archive1.piwheels.org/simple/nanorepeat/NanoRepeat-1.8-py3-none-any.whl#sha256=86880cd68d729d8dd766d29b0114f3b635ecfa0c94b091b772ad5882434ab58f (from https://www.piwheels.org/simple/nanorepeat/)
2025-09-15T18:02:57,785   Skipping link: No binaries permitted for nanorepeat: https://archive1.piwheels.org/simple/nanorepeat/NanoRepeat-1.7-py3-none-any.whl#sha256=3112ecaaf4098a2a2e496bb2d7aab0f1d0b628108c29d21e624d183086b322dc (from https://www.piwheels.org/simple/nanorepeat/)
2025-09-15T18:02:57,785   Skipping link: No binaries permitted for nanorepeat: https://archive1.piwheels.org/simple/nanorepeat/NanoRepeat-1.6-py3-none-any.whl#sha256=12de547354df3d1a8c8a3570f6227297d2489ab54c467109601702ccf9b60d94 (from https://www.piwheels.org/simple/nanorepeat/)
2025-09-15T18:02:57,786   Skipping link: No binaries permitted for nanorepeat: https://archive1.piwheels.org/simple/nanorepeat/NanoRepeat-1.5-py3-none-any.whl#sha256=791d81e6f044169e6b8aec9913b9848ed6ef27d3385cf076fa21a30f1b99c24f (from https://www.piwheels.org/simple/nanorepeat/)
2025-09-15T18:02:57,786   Skipping link: No binaries permitted for nanorepeat: https://archive1.piwheels.org/simple/nanorepeat/NanoRepeat-1.4.1-py3-none-any.whl#sha256=029ba0973bea68ee83c7189b6b81977d20709b0c201cd668ac3bcce811eec6a8 (from https://www.piwheels.org/simple/nanorepeat/)
2025-09-15T18:02:57,787   Skipping link: No binaries permitted for nanorepeat: https://archive1.piwheels.org/simple/nanorepeat/NanoRepeat-1.4.0-py3-none-any.whl#sha256=774a8bb249f281294e710c56004ccc8ba580bc7525796724f2e0c5ca8267f1b9 (from https://www.piwheels.org/simple/nanorepeat/)
2025-09-15T18:02:57,787 Skipping link: not a file: https://www.piwheels.org/simple/nanorepeat/
2025-09-15T18:02:57,788 Skipping link: not a file: https://pypi.org/simple/nanorepeat/
2025-09-15T18:02:57,806 Given no hashes to check 1 links for project 'nanorepeat': discarding no candidates
2025-09-15T18:02:57,807 Collecting nanorepeat==1.8.2
2025-09-15T18:02:57,810   Created temporary directory: /tmp/pip-unpack-9wo5k3eq
2025-09-15T18:02:58,030   Downloading nanorepeat-1.8.2.tar.gz (42 kB)
2025-09-15T18:02:58,113   Added nanorepeat==1.8.2 from https://files.pythonhosted.org/packages/42/e5/314abc79f4f9fec166a604fed146f87068d6a126cc368be186176aa40bee/nanorepeat-1.8.2.tar.gz to build tracker '/tmp/pip-build-tracker-f8e26flj'
2025-09-15T18:02:58,115   Running setup.py (path:/tmp/pip-wheel-3p1kgkxk/nanorepeat_c7a5156268624bcf8436fd6116add562/setup.py) egg_info for package nanorepeat
2025-09-15T18:02:58,116   Created temporary directory: /tmp/pip-pip-egg-info-g8696g3i
2025-09-15T18:02:58,117   Preparing metadata (setup.py): started
2025-09-15T18:02:58,118   Running command python setup.py egg_info
2025-09-15T18:02:59,005   running egg_info
2025-09-15T18:02:59,031   creating /tmp/pip-pip-egg-info-g8696g3i/NanoRepeat.egg-info
2025-09-15T18:02:59,032   writing /tmp/pip-pip-egg-info-g8696g3i/NanoRepeat.egg-info/PKG-INFO
2025-09-15T18:02:59,036   writing dependency_links to /tmp/pip-pip-egg-info-g8696g3i/NanoRepeat.egg-info/dependency_links.txt
2025-09-15T18:02:59,038   writing requirements to /tmp/pip-pip-egg-info-g8696g3i/NanoRepeat.egg-info/requires.txt
2025-09-15T18:02:59,040   writing top-level names to /tmp/pip-pip-egg-info-g8696g3i/NanoRepeat.egg-info/top_level.txt
2025-09-15T18:02:59,041   writing manifest file '/tmp/pip-pip-egg-info-g8696g3i/NanoRepeat.egg-info/SOURCES.txt'
2025-09-15T18:02:59,149   reading manifest file '/tmp/pip-pip-egg-info-g8696g3i/NanoRepeat.egg-info/SOURCES.txt'
2025-09-15T18:02:59,151   adding license file 'LICENSE'
2025-09-15T18:02:59,154   writing manifest file '/tmp/pip-pip-egg-info-g8696g3i/NanoRepeat.egg-info/SOURCES.txt'
2025-09-15T18:02:59,259   Preparing metadata (setup.py): finished with status 'done'
2025-09-15T18:02:59,263   Source in /tmp/pip-wheel-3p1kgkxk/nanorepeat_c7a5156268624bcf8436fd6116add562 has version 1.8.2, which satisfies requirement nanorepeat==1.8.2 from https://files.pythonhosted.org/packages/42/e5/314abc79f4f9fec166a604fed146f87068d6a126cc368be186176aa40bee/nanorepeat-1.8.2.tar.gz
2025-09-15T18:02:59,264   Removed nanorepeat==1.8.2 from https://files.pythonhosted.org/packages/42/e5/314abc79f4f9fec166a604fed146f87068d6a126cc368be186176aa40bee/nanorepeat-1.8.2.tar.gz from build tracker '/tmp/pip-build-tracker-f8e26flj'
2025-09-15T18:02:59,271 Created temporary directory: /tmp/pip-unpack-9tcqi2gu
2025-09-15T18:02:59,272 Created temporary directory: /tmp/pip-unpack-fwadr3sy
2025-09-15T18:02:59,273 Building wheels for collected packages: nanorepeat
2025-09-15T18:02:59,277   Created temporary directory: /tmp/pip-wheel-k82mpib2
2025-09-15T18:02:59,277   DEPRECATION: Building 'nanorepeat' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'nanorepeat'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-09-15T18:02:59,279   Building wheel for nanorepeat (setup.py): started
2025-09-15T18:02:59,280   Destination directory: /tmp/pip-wheel-k82mpib2
2025-09-15T18:02:59,281   Running command python setup.py bdist_wheel
2025-09-15T18:03:00,088   running bdist_wheel
2025-09-15T18:03:00,216   running build
2025-09-15T18:03:00,217   running build_py
2025-09-15T18:03:00,246   creating build/lib/NanoRepeat
2025-09-15T18:03:00,248   copying src/NanoRepeat/nanoRepeat.py -> build/lib/NanoRepeat
2025-09-15T18:03:00,250   copying src/NanoRepeat/__init__.py -> build/lib/NanoRepeat
2025-09-15T18:03:00,252   copying src/NanoRepeat/nanoRepeat_bam.py -> build/lib/NanoRepeat
2025-09-15T18:03:00,255   copying src/NanoRepeat/paf.py -> build/lib/NanoRepeat
2025-09-15T18:03:00,257   copying src/NanoRepeat/split_alleles.py -> build/lib/NanoRepeat
2025-09-15T18:03:00,260   copying src/NanoRepeat/nanoRepeat-joint.py -> build/lib/NanoRepeat
2025-09-15T18:03:00,262   copying src/NanoRepeat/tk.py -> build/lib/NanoRepeat
2025-09-15T18:03:00,265   copying src/NanoRepeat/repeat_region.py -> build/lib/NanoRepeat
2025-09-15T18:03:00,268   running build_scripts
2025-09-15T18:03:00,269   creating build/scripts-3.11
2025-09-15T18:03:00,270   copying and adjusting src/NanoRepeat/nanoRepeat.py -> build/scripts-3.11
2025-09-15T18:03:00,273   copying and adjusting src/NanoRepeat/nanoRepeat-joint.py -> build/scripts-3.11
2025-09-15T18:03:00,276   changing mode of build/scripts-3.11/nanoRepeat.py from 644 to 755
2025-09-15T18:03:00,277   changing mode of build/scripts-3.11/nanoRepeat-joint.py from 644 to 755
2025-09-15T18:03:00,306   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-09-15T18:03:00,307   !!

2025-09-15T18:03:00,308           ********************************************************************************
2025-09-15T18:03:00,308           Please avoid running ``setup.py`` directly.
2025-09-15T18:03:00,309           Instead, use pypa/build, pypa/installer or other
2025-09-15T18:03:00,309           standards-based tools.

2025-09-15T18:03:00,310           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-09-15T18:03:00,311           or your builds will no longer be supported.

2025-09-15T18:03:00,312           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-09-15T18:03:00,313           ********************************************************************************

2025-09-15T18:03:00,314   !!
2025-09-15T18:03:00,314     self.initialize_options()
2025-09-15T18:03:00,333   installing to build/bdist.linux-armv7l/wheel
2025-09-15T18:03:00,333   running install
2025-09-15T18:03:00,357   running install_lib
2025-09-15T18:03:00,382   creating build/bdist.linux-armv7l/wheel
2025-09-15T18:03:00,384   creating build/bdist.linux-armv7l/wheel/NanoRepeat
2025-09-15T18:03:00,386   copying build/lib/NanoRepeat/nanoRepeat.py -> build/bdist.linux-armv7l/wheel/./NanoRepeat
2025-09-15T18:03:00,388   copying build/lib/NanoRepeat/__init__.py -> build/bdist.linux-armv7l/wheel/./NanoRepeat
2025-09-15T18:03:00,390   copying build/lib/NanoRepeat/nanoRepeat_bam.py -> build/bdist.linux-armv7l/wheel/./NanoRepeat
2025-09-15T18:03:00,392   copying build/lib/NanoRepeat/paf.py -> build/bdist.linux-armv7l/wheel/./NanoRepeat
2025-09-15T18:03:00,394   copying build/lib/NanoRepeat/split_alleles.py -> build/bdist.linux-armv7l/wheel/./NanoRepeat
2025-09-15T18:03:00,397   copying build/lib/NanoRepeat/nanoRepeat-joint.py -> build/bdist.linux-armv7l/wheel/./NanoRepeat
2025-09-15T18:03:00,400   copying build/lib/NanoRepeat/tk.py -> build/bdist.linux-armv7l/wheel/./NanoRepeat
2025-09-15T18:03:00,402   copying build/lib/NanoRepeat/repeat_region.py -> build/bdist.linux-armv7l/wheel/./NanoRepeat
2025-09-15T18:03:00,405   running install_data
2025-09-15T18:03:00,432   creating build/bdist.linux-armv7l/wheel/nanorepeat-1.8.2.data/data
2025-09-15T18:03:00,434   copying LICENSE -> build/bdist.linux-armv7l/wheel/nanorepeat-1.8.2.data/data/.
2025-09-15T18:03:00,435   running install_egg_info
2025-09-15T18:03:00,468   running egg_info
2025-09-15T18:03:00,493   writing src/NanoRepeat.egg-info/PKG-INFO
2025-09-15T18:03:00,497   writing dependency_links to src/NanoRepeat.egg-info/dependency_links.txt
2025-09-15T18:03:00,499   writing requirements to src/NanoRepeat.egg-info/requires.txt
2025-09-15T18:03:00,500   writing top-level names to src/NanoRepeat.egg-info/top_level.txt
2025-09-15T18:03:00,529   reading manifest file 'src/NanoRepeat.egg-info/SOURCES.txt'
2025-09-15T18:03:00,531   adding license file 'LICENSE'
2025-09-15T18:03:00,534   writing manifest file 'src/NanoRepeat.egg-info/SOURCES.txt'
2025-09-15T18:03:00,535   Copying src/NanoRepeat.egg-info to build/bdist.linux-armv7l/wheel/./NanoRepeat-1.8.2-py3.11.egg-info
2025-09-15T18:03:00,545   running install_scripts
2025-09-15T18:03:00,546   creating build/bdist.linux-armv7l/wheel/nanorepeat-1.8.2.data/scripts
2025-09-15T18:03:00,547   copying build/scripts-3.11/nanoRepeat.py -> build/bdist.linux-armv7l/wheel/nanorepeat-1.8.2.data/scripts
2025-09-15T18:03:00,549   copying build/scripts-3.11/nanoRepeat-joint.py -> build/bdist.linux-armv7l/wheel/nanorepeat-1.8.2.data/scripts
2025-09-15T18:03:00,552   changing mode of build/bdist.linux-armv7l/wheel/nanorepeat-1.8.2.data/scripts/nanoRepeat.py to 755
2025-09-15T18:03:00,552   changing mode of build/bdist.linux-armv7l/wheel/nanorepeat-1.8.2.data/scripts/nanoRepeat-joint.py to 755
2025-09-15T18:03:00,563   creating build/bdist.linux-armv7l/wheel/nanorepeat-1.8.2.dist-info/WHEEL
2025-09-15T18:03:00,566   creating '/tmp/pip-wheel-k82mpib2/nanorepeat-1.8.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-09-15T18:03:00,568   adding 'NanoRepeat/__init__.py'
2025-09-15T18:03:00,572   adding 'NanoRepeat/nanoRepeat-joint.py'
2025-09-15T18:03:00,574   adding 'NanoRepeat/nanoRepeat.py'
2025-09-15T18:03:00,579   adding 'NanoRepeat/nanoRepeat_bam.py'
2025-09-15T18:03:00,580   adding 'NanoRepeat/paf.py'
2025-09-15T18:03:00,582   adding 'NanoRepeat/repeat_region.py'
2025-09-15T18:03:00,586   adding 'NanoRepeat/split_alleles.py'
2025-09-15T18:03:00,588   adding 'NanoRepeat/tk.py'
2025-09-15T18:03:00,590   adding 'nanorepeat-1.8.2.data/data/LICENSE'
2025-09-15T18:03:00,595   adding 'nanorepeat-1.8.2.data/scripts/nanoRepeat-joint.py'
2025-09-15T18:03:00,597   adding 'nanorepeat-1.8.2.data/scripts/nanoRepeat.py'
2025-09-15T18:03:00,599   adding 'nanorepeat-1.8.2.dist-info/licenses/LICENSE'
2025-09-15T18:03:00,601   adding 'nanorepeat-1.8.2.dist-info/METADATA'
2025-09-15T18:03:00,602   adding 'nanorepeat-1.8.2.dist-info/WHEEL'
2025-09-15T18:03:00,603   adding 'nanorepeat-1.8.2.dist-info/top_level.txt'
2025-09-15T18:03:00,604   adding 'nanorepeat-1.8.2.dist-info/RECORD'
2025-09-15T18:03:00,606   removing build/bdist.linux-armv7l/wheel
2025-09-15T18:03:00,719   Building wheel for nanorepeat (setup.py): finished with status 'done'
2025-09-15T18:03:00,722   Created wheel for nanorepeat: filename=nanorepeat-1.8.2-py3-none-any.whl size=54293 sha256=d0c35b1ab0a55af1e6d5866b4ef23cb7bf001570a748e661e3afc51e9ff577bd
2025-09-15T18:03:00,723   Stored in directory: /tmp/pip-ephem-wheel-cache-hh4qvji9/wheels/66/5e/57/468a8c3982c7ae0dd0f295ee3f54e1cc96e653b517a7778560
2025-09-15T18:03:00,736 Successfully built nanorepeat
2025-09-15T18:03:00,740 Removed build tracker: '/tmp/pip-build-tracker-f8e26flj'