2025-09-15T21:58:04,224 Created temporary directory: /tmp/pip-ephem-wheel-cache-d4aywe6q 2025-09-15T21:58:04,227 Created temporary directory: /tmp/pip-req-tracker-k_45n2vs 2025-09-15T21:58:04,227 Initialized build tracking at /tmp/pip-req-tracker-k_45n2vs 2025-09-15T21:58:04,227 Created build tracker: /tmp/pip-req-tracker-k_45n2vs 2025-09-15T21:58:04,227 Entered build tracker: /tmp/pip-req-tracker-k_45n2vs 2025-09-15T21:58:04,228 Created temporary directory: /tmp/pip-wheel-zk98e5wb 2025-09-15T21:58:04,248 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple, https://www.piwheels.org/simple 2025-09-15T21:58:04,249 2 location(s) to search for versions of kssdtree: 2025-09-15T21:58:04,249 * https://pypi.org/simple/kssdtree/ 2025-09-15T21:58:04,249 * https://www.piwheels.org/simple/kssdtree/ 2025-09-15T21:58:04,250 Fetching project page and analyzing links: https://pypi.org/simple/kssdtree/ 2025-09-15T21:58:04,250 Getting page https://pypi.org/simple/kssdtree/ 2025-09-15T21:58:04,252 Found index url https://pypi.org/simple 2025-09-15T21:58:04,256 Starting new HTTPS connection (1): pypi.org:443 2025-09-15T21:58:04,374 https://pypi.org:443 "GET /simple/kssdtree/ HTTP/1.1" 200 1802 2025-09-15T21:58:04,448 Found link https://files.pythonhosted.org/packages/d5/1e/9e5c5945a44bb40002d1c259f734a531999fa6e87db89fe7c7ddcfc583cc/kssdtree-1.1.1.tar.gz#sha256=bf3cab86e89b6b582ba9ad245264808902efb41c875aaf6d730fbc10cb019cde (from https://pypi.org/simple/kssdtree/), version: 1.1.1 2025-09-15T21:58:04,448 Found link https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz#sha256=42effc7c897303a981c9746cd854a6a4fd5ff5905b46c20fbc6ce1f7d45c3ea7 (from https://pypi.org/simple/kssdtree/), version: 1.1.2 2025-09-15T21:58:04,448 Found link https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz#sha256=0ffe4a29d67de8ca6c6cfcca8b7fd9d764b46c62c8d8d0a4bda87cd7a0709775 (from https://pypi.org/simple/kssdtree/), version: 1.1.3 2025-09-15T21:58:04,449 Found link https://files.pythonhosted.org/packages/20/ea/b0301924e3f7d367cbb7b8da66837dba9af2a332bf56ed35e03a33faee76/kssdtree-1.1.4.tar.gz#sha256=741fd7c1babd190fd158a8bd59c22ee769efb8f675d709537c387effb05b6049 (from https://pypi.org/simple/kssdtree/), version: 1.1.4 2025-09-15T21:58:04,449 Found link https://files.pythonhosted.org/packages/41/65/ed35110b84bc0dd02b9add0104f10160754d2ea0882191767d512146a884/kssdtree-1.1.6.tar.gz#sha256=e1a0baf89155dd739cae854bebc7f95220d4b39d8d8e72f8c9165ea3be628406 (from https://pypi.org/simple/kssdtree/), version: 1.1.6 2025-09-15T21:58:04,449 Found link https://files.pythonhosted.org/packages/cd/4b/d886cbcc573ff0969da7d9c756049925b86141e60ee6708dfbbe0644d008/kssdtree-1.1.7.tar.gz#sha256=1662c719840f11eb8d59f87b4a094387e210884c1c563124c7d2446ab45b77e0 (from https://pypi.org/simple/kssdtree/), version: 1.1.7 2025-09-15T21:58:04,450 Found link https://files.pythonhosted.org/packages/7e/8a/a62c8adc92df69ab8cb242827ee64a3e2b6d5c89b83425785dd00605af17/kssdtree-1.1.8.tar.gz#sha256=13e9d672c59aee331866ef4bacade5dce00cc0786e76216cd505c61a745f2d9e (from https://pypi.org/simple/kssdtree/), version: 1.1.8 2025-09-15T21:58:04,450 Found link https://files.pythonhosted.org/packages/da/db/e458cca6427752c05428d2378ccdee631d32f760174fdaba65f73125e71b/kssdtree-1.1.9.tar.gz#sha256=7d2369e6115ef2cfa4661b11353ad5d8c3f240da20c005ec0e0b7388ebc3b1df (from https://pypi.org/simple/kssdtree/), version: 1.1.9 2025-09-15T21:58:04,450 Found link https://files.pythonhosted.org/packages/9d/47/017180a30e73e421372377cbe6d01c5e51a5108ea2177f20ccd7d283f8d1/kssdtree-2.0.0.tar.gz#sha256=d73856db5284551744e106217cef97b92bb726709da565b8bb360e0787ed81c6 (from https://pypi.org/simple/kssdtree/), version: 2.0.0 2025-09-15T21:58:04,451 Found link https://files.pythonhosted.org/packages/ba/39/d443cac955912a0371c93b797311cb9ec3a8d6ee0a5d7673376d826aa6b2/kssdtree-2.0.1.tar.gz#sha256=a0e75875f56a10b5d752855fefdb5fd136f9e555efbf87e1520fb590fa65fe7b (from https://pypi.org/simple/kssdtree/), version: 2.0.1 2025-09-15T21:58:04,451 Found link https://files.pythonhosted.org/packages/2e/32/e53c0e3735cbc913b2c96b4e0e1c1005fe816a4d71b38b80cdcfb5c67fa8/kssdtree-2.0.2.tar.gz#sha256=9a944c9e7de930f6bd7aae479f03dc38a79aaa7f1e82432936b7b21340775a03 (from https://pypi.org/simple/kssdtree/), version: 2.0.2 2025-09-15T21:58:04,451 Found link https://files.pythonhosted.org/packages/c0/0f/effc10c8e76dbe3b9a35a4b4d9e65a0a889ee805e10334541c3ca7ae3b94/kssdtree-2.0.3.tar.gz#sha256=9efac23369d5f14bca36a1926050821eb9a0cfde618ad226bdb10866a434e1c4 (from https://pypi.org/simple/kssdtree/), version: 2.0.3 2025-09-15T21:58:04,452 Found link https://files.pythonhosted.org/packages/fc/8d/d3790baa2f2f0a01c913005b94a82dc13ef601e7015e662ccff94bb1b458/kssdtree-2.0.4.tar.gz#sha256=e93c66915a3a20a269f05968eaa70e2d88018ca3e6973a85460c388b6b2a09d8 (from https://pypi.org/simple/kssdtree/), version: 2.0.4 2025-09-15T21:58:04,452 Found link https://files.pythonhosted.org/packages/b5/f8/19480a4c57704944f973ebf534f9582054949cca20170a33c6f874974440/kssdtree-2.0.5.tar.gz#sha256=954ce08a38bdae1f847388775c3dbdff1f0e8a68dd0bca5d43a98ab5289fee61 (from https://pypi.org/simple/kssdtree/), version: 2.0.5 2025-09-15T21:58:04,452 Found link https://files.pythonhosted.org/packages/46/ef/2d920d5d2fceded48c7add363e04f49ae85414bcd4360e1295d6fddc4a24/kssdtree-2.0.6.tar.gz#sha256=68b0905094f99ceff73d8186c5b005906b1b8fcf9e70fd0ce266dd700cce1b50 (from https://pypi.org/simple/kssdtree/), version: 2.0.6 2025-09-15T21:58:04,453 Found link https://files.pythonhosted.org/packages/9c/1c/c6b3f05465d145856ac992328bd59e776286a59b120254620c1dbffcf67f/kssdtree-2.0.7.tar.gz#sha256=f304750bc48a344cd83c6b62e93a729299be609f392a3e91ec4c8af460980e90 (from https://pypi.org/simple/kssdtree/), version: 2.0.7 2025-09-15T21:58:04,453 Found link https://files.pythonhosted.org/packages/82/9b/dac2af6572f0c4421e5ba8341dcfddac466de30c62acfa019d9ef70b2670/kssdtree-2.0.8.tar.gz#sha256=8c6c32364cbdb22c18db2dd6a984018e8c6bbc55b25f384f12c5647bb142c1f0 (from https://pypi.org/simple/kssdtree/), version: 2.0.8 2025-09-15T21:58:04,453 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdtree/ 2025-09-15T21:58:04,453 Getting page https://www.piwheels.org/simple/kssdtree/ 2025-09-15T21:58:04,454 Found index url https://www.piwheels.org/simple 2025-09-15T21:58:04,456 Starting new HTTPS connection (1): www.piwheels.org:443 2025-09-15T21:58:04,524 https://www.piwheels.org:443 "GET /simple/kssdtree/ HTTP/1.1" 200 2069 2025-09-15T21:58:04,560 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv6l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,560 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv7l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,560 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv6l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,561 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv7l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,561 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp311-cp311-linux_armv6l.whl#sha256=e1e02281e0fc8ed3b80b596a811ca2a9b50cb7affb3649479228d59c074c1f94 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,561 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp311-cp311-linux_armv7l.whl#sha256=e1e02281e0fc8ed3b80b596a811ca2a9b50cb7affb3649479228d59c074c1f94 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,561 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp311-cp311-linux_armv6l.whl#sha256=cecf3000ed0ffcd720412023d8de2f213356363c01aa3193441c040ed34353d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,562 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp311-cp311-linux_armv7l.whl#sha256=cecf3000ed0ffcd720412023d8de2f213356363c01aa3193441c040ed34353d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,562 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp39-cp39-linux_armv6l.whl#sha256=db08595adc89347b61965ba36e918055e8a0dc5f6a2b0bdfe16133eb363412d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,562 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp39-cp39-linux_armv7l.whl#sha256=db08595adc89347b61965ba36e918055e8a0dc5f6a2b0bdfe16133eb363412d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,562 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp311-cp311-linux_armv6l.whl#sha256=97a69f799c2d1b7024a9033b8a1e3fc17af4748a1ed726f52397d884303eb870 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,562 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp311-cp311-linux_armv7l.whl#sha256=97a69f799c2d1b7024a9033b8a1e3fc17af4748a1ed726f52397d884303eb870 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,563 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp39-cp39-linux_armv6l.whl#sha256=00938a03bead64e58bc1928832b7952b04d844e79b41da12160490c7edbb9e9f (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,563 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp39-cp39-linux_armv7l.whl#sha256=00938a03bead64e58bc1928832b7952b04d844e79b41da12160490c7edbb9e9f (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,563 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp311-cp311-linux_armv6l.whl#sha256=d70b4b00c6bf4ff5b294b9ad2594aa1e32981df4b9869be9d13aafa0ff614bc3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,563 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp311-cp311-linux_armv7l.whl#sha256=d70b4b00c6bf4ff5b294b9ad2594aa1e32981df4b9869be9d13aafa0ff614bc3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,564 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp39-cp39-linux_armv6l.whl#sha256=f629766f3426bb8a83c6f4adca8b02b03cb85452c129c9694cef65efd715fabd (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,564 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp39-cp39-linux_armv7l.whl#sha256=f629766f3426bb8a83c6f4adca8b02b03cb85452c129c9694cef65efd715fabd (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,564 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp311-cp311-linux_armv6l.whl#sha256=ae7417e30efd12d8c6800d4167141c94a93f1ce51afd5ae9196cdfb6057ca7d2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,564 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp311-cp311-linux_armv7l.whl#sha256=ae7417e30efd12d8c6800d4167141c94a93f1ce51afd5ae9196cdfb6057ca7d2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,564 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv6l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,565 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv7l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,565 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.1-cp311-cp311-linux_armv6l.whl#sha256=8b8c3190a5a4a010758772e9d53c3c12436541437bc9c503bec9a8f6a007cdcc (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,565 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.1-cp311-cp311-linux_armv7l.whl#sha256=8b8c3190a5a4a010758772e9d53c3c12436541437bc9c503bec9a8f6a007cdcc (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,565 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.0-cp311-cp311-linux_armv6l.whl#sha256=16a2e46376ed2874435371fd57a97405d4b631b35c014b9e395a4528a1e655b8 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,566 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.0-cp311-cp311-linux_armv7l.whl#sha256=16a2e46376ed2874435371fd57a97405d4b631b35c014b9e395a4528a1e655b8 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,566 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.9-cp311-cp311-linux_armv7l.whl#sha256=d4c397f5fcb0af48dbb11b9fb7d7b399cc180d65355b794a8fcc7327e9a7dde1 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,567 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.9-cp39-cp39-linux_armv6l.whl#sha256=ab11dc15aca2923fe0d60bf11deb134bed4df89280b4ce40ca8e9bf3ca46b168 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,567 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.9-cp39-cp39-linux_armv7l.whl#sha256=ab11dc15aca2923fe0d60bf11deb134bed4df89280b4ce40ca8e9bf3ca46b168 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,567 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp39-cp39-linux_armv6l.whl#sha256=6b3f5b0e827056c7b589f4fb02c353408efa5892ef4df1c8a54b4cb30331754a (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,567 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp39-cp39-linux_armv7l.whl#sha256=6b3f5b0e827056c7b589f4fb02c353408efa5892ef4df1c8a54b4cb30331754a (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,567 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv6l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,568 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv7l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,568 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp311-cp311-linux_armv6l.whl#sha256=388a8dabd657ea83e6d22b52300337c74e9d84e506806cfd4d2a76eb98777e17 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,568 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp311-cp311-linux_armv7l.whl#sha256=388a8dabd657ea83e6d22b52300337c74e9d84e506806cfd4d2a76eb98777e17 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,568 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp39-cp39-linux_armv6l.whl#sha256=e1df896451d30c12e01aceb3eb91f0f7dfe0ee6f16fd66864fdefbc21cc54856 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,569 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp39-cp39-linux_armv7l.whl#sha256=e1df896451d30c12e01aceb3eb91f0f7dfe0ee6f16fd66864fdefbc21cc54856 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,569 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv6l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,569 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv7l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,569 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv6l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,569 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv7l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,570 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv6l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,570 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv7l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,570 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,570 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,570 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,571 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,571 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,571 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,571 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv6l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,572 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv7l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,572 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,572 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,572 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,572 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,573 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,573 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,573 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,573 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,573 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv6l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,574 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv7l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,574 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,574 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,574 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,575 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-15T21:58:04,605 Given no hashes to check 1 links for project 'kssdtree': discarding no candidates 2025-09-15T21:58:04,637 Collecting kssdtree==2.0.6 2025-09-15T21:58:04,639 Created temporary directory: /tmp/pip-unpack-98hh7vaj 2025-09-15T21:58:04,642 Starting new HTTPS connection (1): files.pythonhosted.org:443 2025-09-15T21:58:04,676 https://files.pythonhosted.org:443 "GET /packages/46/ef/2d920d5d2fceded48c7add363e04f49ae85414bcd4360e1295d6fddc4a24/kssdtree-2.0.6.tar.gz HTTP/1.1" 200 113513 2025-09-15T21:58:04,677 Downloading kssdtree-2.0.6.tar.gz (113 kB) 2025-09-15T21:58:04,884 Added kssdtree==2.0.6 from https://files.pythonhosted.org/packages/46/ef/2d920d5d2fceded48c7add363e04f49ae85414bcd4360e1295d6fddc4a24/kssdtree-2.0.6.tar.gz#sha256=68b0905094f99ceff73d8186c5b005906b1b8fcf9e70fd0ce266dd700cce1b50 to build tracker '/tmp/pip-req-tracker-k_45n2vs' 2025-09-15T21:58:04,885 Running setup.py (path:/tmp/pip-wheel-zk98e5wb/kssdtree_08eb10cef7c0445eae5be44658cd7f20/setup.py) egg_info for package kssdtree 2025-09-15T21:58:04,886 Created temporary directory: /tmp/pip-pip-egg-info-x2_hcw_l 2025-09-15T21:58:04,886 Running command python setup.py egg_info 2025-09-15T21:58:05,774 running egg_info 2025-09-15T21:58:05,803 creating /tmp/pip-pip-egg-info-x2_hcw_l/kssdtree.egg-info 2025-09-15T21:58:05,804 writing /tmp/pip-pip-egg-info-x2_hcw_l/kssdtree.egg-info/PKG-INFO 2025-09-15T21:58:05,807 writing dependency_links to /tmp/pip-pip-egg-info-x2_hcw_l/kssdtree.egg-info/dependency_links.txt 2025-09-15T21:58:05,809 writing requirements to /tmp/pip-pip-egg-info-x2_hcw_l/kssdtree.egg-info/requires.txt 2025-09-15T21:58:05,810 writing top-level names to /tmp/pip-pip-egg-info-x2_hcw_l/kssdtree.egg-info/top_level.txt 2025-09-15T21:58:05,812 writing manifest file '/tmp/pip-pip-egg-info-x2_hcw_l/kssdtree.egg-info/SOURCES.txt' 2025-09-15T21:58:05,919 reading manifest file '/tmp/pip-pip-egg-info-x2_hcw_l/kssdtree.egg-info/SOURCES.txt' 2025-09-15T21:58:05,921 reading manifest template 'MANIFEST.in' 2025-09-15T21:58:05,940 writing manifest file '/tmp/pip-pip-egg-info-x2_hcw_l/kssdtree.egg-info/SOURCES.txt' 2025-09-15T21:58:06,029 Source in /tmp/pip-wheel-zk98e5wb/kssdtree_08eb10cef7c0445eae5be44658cd7f20 has version 2.0.6, which satisfies requirement kssdtree==2.0.6 from https://files.pythonhosted.org/packages/46/ef/2d920d5d2fceded48c7add363e04f49ae85414bcd4360e1295d6fddc4a24/kssdtree-2.0.6.tar.gz#sha256=68b0905094f99ceff73d8186c5b005906b1b8fcf9e70fd0ce266dd700cce1b50 2025-09-15T21:58:06,030 Removed kssdtree==2.0.6 from https://files.pythonhosted.org/packages/46/ef/2d920d5d2fceded48c7add363e04f49ae85414bcd4360e1295d6fddc4a24/kssdtree-2.0.6.tar.gz#sha256=68b0905094f99ceff73d8186c5b005906b1b8fcf9e70fd0ce266dd700cce1b50 from build tracker '/tmp/pip-req-tracker-k_45n2vs' 2025-09-15T21:58:06,034 Created temporary directory: /tmp/pip-unpack-mm4fang1 2025-09-15T21:58:06,034 Building wheels for collected packages: kssdtree 2025-09-15T21:58:06,038 Created temporary directory: /tmp/pip-wheel-33mlrz_s 2025-09-15T21:58:06,039 Building wheel for kssdtree (setup.py): started 2025-09-15T21:58:06,039 Destination directory: /tmp/pip-wheel-33mlrz_s 2025-09-15T21:58:06,039 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-zk98e5wb/kssdtree_08eb10cef7c0445eae5be44658cd7f20/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-zk98e5wb/kssdtree_08eb10cef7c0445eae5be44658cd7f20/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-33mlrz_s 2025-09-15T21:58:06,935 running bdist_wheel 2025-09-15T21:58:07,069 running build 2025-09-15T21:58:07,069 running build_py 2025-09-15T21:58:07,099 creating build/lib.linux-armv7l-cpython-39 2025-09-15T21:58:07,101 copying kssdtree.py -> build/lib.linux-armv7l-cpython-39 2025-09-15T21:58:07,104 copying toolutils.py -> build/lib.linux-armv7l-cpython-39 2025-09-15T21:58:07,106 running egg_info 2025-09-15T21:58:07,134 writing kssdtree.egg-info/PKG-INFO 2025-09-15T21:58:07,137 writing dependency_links to kssdtree.egg-info/dependency_links.txt 2025-09-15T21:58:07,139 writing requirements to kssdtree.egg-info/requires.txt 2025-09-15T21:58:07,140 writing top-level names to kssdtree.egg-info/top_level.txt 2025-09-15T21:58:07,169 reading manifest file 'kssdtree.egg-info/SOURCES.txt' 2025-09-15T21:58:07,175 reading manifest template 'MANIFEST.in' 2025-09-15T21:58:07,195 writing manifest file 'kssdtree.egg-info/SOURCES.txt' 2025-09-15T21:58:07,197 running build_ext 2025-09-15T21:58:07,633 building 'kssd' extension 2025-09-15T21:58:07,634 creating build/temp.linux-armv7l-cpython-39 2025-09-15T21:58:07,636 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c co2mco.c -o build/temp.linux-armv7l-cpython-39/co2mco.o -fopenmp 2025-09-15T21:58:07,787 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2025-09-15T21:58:07,787 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-15T21:58:07,787 109 | for (unsigned int i = 0; i < comp_num; i++) { 2025-09-15T21:58:07,788 | ^ 2025-09-15T21:58:07,790 co2mco.c: In function ‘co2unitllmco’: 2025-09-15T21:58:07,790 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-15T21:58:07,790 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2025-09-15T21:58:07,791 | ^ 2025-09-15T21:58:08,405 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_composite.c -o build/temp.linux-armv7l-cpython-39/command_composite.o -fopenmp 2025-09-15T21:58:08,703 command_composite.c: In function ‘get_species_abundance’: 2025-09-15T21:58:08,704 command_composite.c:32:34: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-15T21:58:08,704 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2025-09-15T21:58:08,704 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:08,704 command_composite.c:34:34: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-15T21:58:08,705 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2025-09-15T21:58:08,705 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:08,705 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:08,705 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-15T21:58:08,706 | ^ 2025-09-15T21:58:08,706 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2025-09-15T21:58:08,706 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-15T21:58:08,706 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:08,706 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:08,707 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-15T21:58:08,707 | ^ 2025-09-15T21:58:08,707 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2025-09-15T21:58:08,707 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-15T21:58:08,708 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:08,708 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:08,708 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-15T21:58:08,708 | ^ 2025-09-15T21:58:08,708 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2025-09-15T21:58:08,709 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-15T21:58:08,709 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:08,709 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:08,709 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-15T21:58:08,709 | ^ 2025-09-15T21:58:08,710 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2025-09-15T21:58:08,710 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-15T21:58:08,710 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:08,710 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:08,710 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-15T21:58:08,711 | ^ 2025-09-15T21:58:08,711 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 261) into a destination of size 256 2025-09-15T21:58:08,711 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-15T21:58:08,711 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:08,942 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_dist.c -o build/temp.linux-armv7l-cpython-39/command_dist.o -fopenmp 2025-09-15T21:58:09,140 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-15T21:58:09,141 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T21:58:09,141 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-15T21:58:09,141 | ~~^ 2025-09-15T21:58:09,142 | | 2025-09-15T21:58:09,142 | long unsigned int 2025-09-15T21:58:09,142 | %u 2025-09-15T21:58:09,142 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-15T21:58:09,142 | ~~~~~~~ 2025-09-15T21:58:09,143 | | 2025-09-15T21:58:09,143 | size_t {aka unsigned int} 2025-09-15T21:58:09,143 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T21:58:09,143 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-15T21:58:09,143 | ~~^ 2025-09-15T21:58:09,143 | | 2025-09-15T21:58:09,144 | long unsigned int 2025-09-15T21:58:09,144 | %u 2025-09-15T21:58:09,144 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-15T21:58:09,144 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-15T21:58:09,144 | ~~~~~~~~~ 2025-09-15T21:58:09,145 | | 2025-09-15T21:58:09,145 | size_t {aka unsigned int} 2025-09-15T21:58:09,145 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-15T21:58:09,145 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-15T21:58:09,146 | ~~^ 2025-09-15T21:58:09,146 | | 2025-09-15T21:58:09,146 | long unsigned int 2025-09-15T21:58:09,146 | %u 2025-09-15T21:58:09,146 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-15T21:58:09,147 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-15T21:58:09,147 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:09,147 | | 2025-09-15T21:58:09,147 | unsigned int 2025-09-15T21:58:09,147 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-15T21:58:09,148 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2025-09-15T21:58:09,148 | ^ 2025-09-15T21:58:09,153 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-15T21:58:09,154 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T21:58:09,154 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-15T21:58:09,154 | ~~^ ~~~~~~~ 2025-09-15T21:58:09,154 | | | 2025-09-15T21:58:09,154 | long unsigned int size_t {aka unsigned int} 2025-09-15T21:58:09,155 | %u 2025-09-15T21:58:09,155 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T21:58:09,155 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-15T21:58:09,156 | ~~^ 2025-09-15T21:58:09,156 | | 2025-09-15T21:58:09,156 | long unsigned int 2025-09-15T21:58:09,156 | %u 2025-09-15T21:58:09,156 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-15T21:58:09,156 | ~~~~~~~~~ 2025-09-15T21:58:09,157 | | 2025-09-15T21:58:09,157 | size_t {aka unsigned int} 2025-09-15T21:58:09,157 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-15T21:58:09,157 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-15T21:58:09,157 | ~~^ 2025-09-15T21:58:09,158 | | 2025-09-15T21:58:09,158 | long unsigned int 2025-09-15T21:58:09,158 | %u 2025-09-15T21:58:09,158 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-15T21:58:09,158 865 | (size_t) b * unitsz_distf_mapped); 2025-09-15T21:58:09,159 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:09,159 | | 2025-09-15T21:58:09,159 | unsigned int 2025-09-15T21:58:09,159 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2025-09-15T21:58:09,159 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2025-09-15T21:58:09,159 | ^~~~~~~ 2025-09-15T21:58:09,160 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2025-09-15T21:58:09,160 809 | struct stat cbd_fcode_stat; 2025-09-15T21:58:09,160 | ^~~~~~~~~~~~~~ 2025-09-15T21:58:09,160 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2025-09-15T21:58:09,160 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-15T21:58:09,160 | ^~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:09,161 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2025-09-15T21:58:09,161 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-15T21:58:09,161 | ^~~~~~~~~~~~~~~~~ 2025-09-15T21:58:09,166 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-15T21:58:09,168 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T21:58:09,168 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-15T21:58:09,168 | ~~^ 2025-09-15T21:58:09,168 | | 2025-09-15T21:58:09,168 | long unsigned int 2025-09-15T21:58:09,168 | %u 2025-09-15T21:58:09,169 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-15T21:58:09,169 | ~~~~~~~ 2025-09-15T21:58:09,169 | | 2025-09-15T21:58:09,169 | size_t {aka unsigned int} 2025-09-15T21:58:09,169 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T21:58:09,169 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-15T21:58:09,170 | ~~^ 2025-09-15T21:58:09,170 | | 2025-09-15T21:58:09,170 | long unsigned int 2025-09-15T21:58:09,170 | %u 2025-09-15T21:58:09,170 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-15T21:58:09,170 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-15T21:58:09,171 | ~~~~~~~~~ 2025-09-15T21:58:09,171 | | 2025-09-15T21:58:09,171 | size_t {aka unsigned int} 2025-09-15T21:58:09,171 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-15T21:58:09,171 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-15T21:58:09,172 | ~~^ 2025-09-15T21:58:09,172 | | 2025-09-15T21:58:09,172 | long unsigned int 2025-09-15T21:58:09,172 | %u 2025-09-15T21:58:09,172 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-15T21:58:09,173 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-15T21:58:09,173 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:09,173 | | 2025-09-15T21:58:09,173 | unsigned int 2025-09-15T21:58:09,173 command_dist.c:1034:27: warning: comparison of integer expressions of different signedness: ‘__off_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare] 2025-09-15T21:58:09,174 1034 | if (s.st_size > sizeof(gidobj_t) * MCOMM_SZ) mco_mem = (gidobj_t *) realloc(mco_mem, s.st_size); 2025-09-15T21:58:09,174 | ^ 2025-09-15T21:58:09,176 command_dist.c: In function ‘mco_co_dist_core’: 2025-09-15T21:58:09,177 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-15T21:58:09,177 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2025-09-15T21:58:09,177 | ^ 2025-09-15T21:58:09,183 command_dist.c: In function ‘koc_dist_print_nobin’: 2025-09-15T21:58:09,183 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T21:58:09,183 1239 | for (int rid = 0; rid < ref_num; rid++) 2025-09-15T21:58:09,184 | ^ 2025-09-15T21:58:09,185 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T21:58:09,185 1245 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-15T21:58:09,185 | ^ 2025-09-15T21:58:09,190 command_dist.c: In function ‘dist_print_nobin’: 2025-09-15T21:58:09,191 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T21:58:09,191 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2025-09-15T21:58:09,191 | ^ 2025-09-15T21:58:09,193 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T21:58:09,193 1356 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-15T21:58:09,194 | ^ 2025-09-15T21:58:09,195 command_dist.c:1380:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T21:58:09,195 1380 | for (int rid = 0; rid < ref_num; rid++) 2025-09-15T21:58:09,195 | ^ 2025-09-15T21:58:09,196 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T21:58:09,196 1382 | for (int rid = 0; rid < ref_num; rid++) 2025-09-15T21:58:09,196 | ^ 2025-09-15T21:58:09,478 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2025-09-15T21:58:09,479 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2025-09-15T21:58:09,479 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2025-09-15T21:58:09,479 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:09,479 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2025-09-15T21:58:09,480 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2025-09-15T21:58:09,480 | ^~~~~~~~~~~~ 2025-09-15T21:58:10,202 command_dist.c: In function ‘get_dim_shuffle’: 2025-09-15T21:58:10,202 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2025-09-15T21:58:10,202 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-15T21:58:10,202 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:10,203 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2025-09-15T21:58:10,203 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-15T21:58:10,203 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:10,985 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-15T21:58:10,986 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:10,986 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-15T21:58:10,986 | ^~ ~~~~~~~~~ 2025-09-15T21:58:10,986 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-15T21:58:10,987 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-15T21:58:10,987 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:10,987 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T21:58:10,987 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-15T21:58:10,987 | ^~~~~~~~~~~~~~~ 2025-09-15T21:58:10,988 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-15T21:58:10,988 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-15T21:58:10,988 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:10,989 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T21:58:10,989 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-15T21:58:10,989 | ^~~~~~~~~~~ 2025-09-15T21:58:10,989 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-15T21:58:10,989 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-15T21:58:10,990 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:10,990 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T21:58:10,990 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-15T21:58:10,990 | ^~~~~ 2025-09-15T21:58:10,990 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-15T21:58:10,991 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-15T21:58:10,991 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:11,196 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-15T21:58:11,197 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:11,197 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-15T21:58:11,197 | ^~ ~~~~~~~~~ 2025-09-15T21:58:11,198 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-15T21:58:11,198 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-15T21:58:11,198 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:11,198 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T21:58:11,198 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-15T21:58:11,199 | ^~~~~~~~~~~~~~~ 2025-09-15T21:58:11,199 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-15T21:58:11,199 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-15T21:58:11,199 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:11,199 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T21:58:11,200 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-15T21:58:11,200 | ^~~~~~~~~~~~~ 2025-09-15T21:58:11,200 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-15T21:58:11,200 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-15T21:58:11,200 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:11,201 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:11,201 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-15T21:58:11,202 | ^ 2025-09-15T21:58:11,202 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2025-09-15T21:58:11,202 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-15T21:58:11,202 | ^~~~~~~~~~ 2025-09-15T21:58:11,202 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-15T21:58:11,203 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-15T21:58:11,203 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:11,203 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:11,203 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-15T21:58:11,203 | ^ 2025-09-15T21:58:11,204 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2025-09-15T21:58:11,204 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-15T21:58:11,204 | ^~~~~~~~~~ 2025-09-15T21:58:11,204 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-15T21:58:11,204 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-15T21:58:11,205 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:11,440 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-15T21:58:11,441 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:11,441 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-15T21:58:11,442 | ^~ ~~~~~~~~~ 2025-09-15T21:58:11,442 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-15T21:58:11,442 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-15T21:58:11,442 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:11,443 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T21:58:11,443 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-15T21:58:11,443 | ^~~~~~~~~~~~~~~ 2025-09-15T21:58:11,443 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-15T21:58:11,444 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-15T21:58:11,444 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:11,444 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T21:58:11,445 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-15T21:58:11,445 | ^~~~~~~~~~~~~ 2025-09-15T21:58:11,445 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-15T21:58:11,445 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-15T21:58:11,445 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:11,446 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T21:58:11,447 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-15T21:58:11,447 | ^~~~~~~~~~~ 2025-09-15T21:58:11,447 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-15T21:58:11,447 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-15T21:58:11,447 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:11,448 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-15T21:58:11,448 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-15T21:58:11,448 | ^~~~~ 2025-09-15T21:58:11,448 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-15T21:58:11,449 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-15T21:58:11,449 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:11,695 command_dist.c: In function ‘combine_queries’: 2025-09-15T21:58:11,696 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T21:58:11,697 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-15T21:58:11,697 | ^ 2025-09-15T21:58:11,697 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T21:58:11,698 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-15T21:58:11,698 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:11,698 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T21:58:11,699 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-15T21:58:11,699 | ^ 2025-09-15T21:58:11,699 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T21:58:11,700 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-15T21:58:11,700 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:11,702 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:11,702 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-15T21:58:11,702 | ^~ ~~~~~~~~ 2025-09-15T21:58:11,703 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-15T21:58:11,703 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-15T21:58:11,703 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:12,171 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-39/command_dist_wrapper.o -fopenmp 2025-09-15T21:58:12,338 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_set.c -o build/temp.linux-armv7l-cpython-39/command_set.o -fopenmp 2025-09-15T21:58:12,484 command_set.c: In function ‘sketch_operate’: 2025-09-15T21:58:12,484 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-15T21:58:12,484 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2025-09-15T21:58:12,485 | ^ 2025-09-15T21:58:12,494 command_set.c: In function ‘combin_subset_pans’: 2025-09-15T21:58:12,494 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-15T21:58:12,494 457 | free(co_dstat_fpath); 2025-09-15T21:58:12,494 | ^~~~~~~~~~~~~~ 2025-09-15T21:58:12,495 In file included from kssdheaders/global_basic.h:159, 2025-09-15T21:58:12,495 from command_set.c:15: 2025-09-15T21:58:12,495 /usr/include/stdlib.h:565:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-15T21:58:12,495 565 | extern void free (void *__ptr) __THROW; 2025-09-15T21:58:12,496 | ~~~~~~^~~~~ 2025-09-15T21:58:12,499 command_set.c: In function ‘grouping_genomes’: 2025-09-15T21:58:12,499 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-15T21:58:12,499 562 | free(co_dstat_fpath); 2025-09-15T21:58:12,500 | ^~~~~~~~~~~~~~ 2025-09-15T21:58:12,500 In file included from kssdheaders/global_basic.h:159, 2025-09-15T21:58:12,500 from command_set.c:15: 2025-09-15T21:58:12,500 /usr/include/stdlib.h:565:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-15T21:58:12,500 565 | extern void free (void *__ptr) __THROW; 2025-09-15T21:58:12,501 | ~~~~~~^~~~~ 2025-09-15T21:58:12,615 command_set.c: In function ‘sketch_union’: 2025-09-15T21:58:12,615 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T21:58:12,615 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T21:58:12,616 | ^ 2025-09-15T21:58:12,616 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T21:58:12,616 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T21:58:12,616 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:12,617 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:12,617 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-15T21:58:12,617 | ^~ ~~~~~~~~~~~ 2025-09-15T21:58:12,617 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T21:58:12,618 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-15T21:58:12,618 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:12,618 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:12,618 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-15T21:58:12,619 | ^~ ~~~~~~~~~~ 2025-09-15T21:58:12,619 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-15T21:58:12,619 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-15T21:58:12,619 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:12,728 command_set.c: In function ‘sketch_operate’: 2025-09-15T21:58:12,729 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:12,729 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-15T21:58:12,729 | ^~ ~~~~~~~~~~ 2025-09-15T21:58:12,729 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-15T21:58:12,729 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-15T21:58:12,730 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:12,730 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:12,730 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-15T21:58:12,730 | ^~ ~~~~~~~~~~~~~~~ 2025-09-15T21:58:12,730 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-15T21:58:12,731 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-15T21:58:12,731 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:12,731 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:12,731 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-15T21:58:12,731 | ^~ ~~~~~~~~~~~ 2025-09-15T21:58:12,732 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-15T21:58:12,732 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-15T21:58:12,732 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:12,732 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:12,733 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-15T21:58:12,733 | ^~ ~~~~~~~~~~~ 2025-09-15T21:58:12,733 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T21:58:12,733 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-15T21:58:12,733 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:12,734 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:12,734 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-15T21:58:12,734 | ^~ ~~~~~~~~~~~ 2025-09-15T21:58:12,734 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T21:58:12,734 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-15T21:58:12,735 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:12,735 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:12,735 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-15T21:58:12,735 | ^~ ~~~~~~~~~~~ 2025-09-15T21:58:12,735 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-15T21:58:12,736 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-15T21:58:12,736 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:12,736 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T21:58:12,736 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T21:58:12,736 | ^ 2025-09-15T21:58:12,737 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T21:58:12,737 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T21:58:12,737 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:12,882 command_set.c: In function ‘uniq_sketch_union’: 2025-09-15T21:58:12,882 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T21:58:12,882 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T21:58:12,882 | ^ 2025-09-15T21:58:12,883 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T21:58:12,883 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T21:58:12,883 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:12,883 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:12,883 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-15T21:58:12,884 | ^~ ~~~~~~~~~~~ 2025-09-15T21:58:12,884 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T21:58:12,884 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-15T21:58:12,884 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:12,884 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:12,885 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-15T21:58:12,885 | ^~ ~~~~~~~~~~~~~~~ 2025-09-15T21:58:12,885 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-15T21:58:12,885 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-15T21:58:12,886 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:13,008 command_set.c: In function ‘combin_pans’: 2025-09-15T21:58:13,009 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:13,009 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T21:58:13,009 | ^~ ~~~~~~~~~~~ 2025-09-15T21:58:13,009 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2025-09-15T21:58:13,009 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T21:58:13,010 | ^~~~~~~~~~ 2025-09-15T21:58:13,010 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2025-09-15T21:58:13,010 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T21:58:13,010 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:13,010 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:13,011 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T21:58:13,011 | ^~ ~~~~~~~~~~ 2025-09-15T21:58:13,011 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2025-09-15T21:58:13,011 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T21:58:13,012 | ^~~~~~~~~~ 2025-09-15T21:58:13,012 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2025-09-15T21:58:13,012 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T21:58:13,012 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:13,012 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T21:58:13,013 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T21:58:13,013 | ^ 2025-09-15T21:58:13,013 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T21:58:13,013 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T21:58:13,013 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:13,194 command_set.c: In function ‘combin_subset_pans’: 2025-09-15T21:58:13,194 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:13,194 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-15T21:58:13,195 | ^~ ~~~~~~~~~~~ 2025-09-15T21:58:13,195 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T21:58:13,195 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-15T21:58:13,195 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:13,195 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:13,196 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-15T21:58:13,196 | ^~ ~~~~~~~~~~ 2025-09-15T21:58:13,196 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-15T21:58:13,196 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-15T21:58:13,196 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:13,197 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:13,197 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T21:58:13,197 | ^~ ~~~~~~~~~~~ 2025-09-15T21:58:13,197 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T21:58:13,197 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T21:58:13,198 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:13,198 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:13,198 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T21:58:13,198 | ^~ ~~~~~~~~~~ 2025-09-15T21:58:13,199 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-15T21:58:13,199 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T21:58:13,199 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:13,199 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T21:58:13,199 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T21:58:13,199 | ^ 2025-09-15T21:58:13,200 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T21:58:13,200 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T21:58:13,200 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:13,400 command_set.c: In function ‘grouping_genomes’: 2025-09-15T21:58:13,401 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:13,401 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-15T21:58:13,401 | ^~ ~~~~~~~~~~~ 2025-09-15T21:58:13,401 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T21:58:13,401 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-15T21:58:13,401 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:13,402 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:13,402 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-15T21:58:13,402 | ^~ ~~~~~~~~~~ 2025-09-15T21:58:13,402 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-15T21:58:13,403 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-15T21:58:13,403 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:13,404 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:13,404 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T21:58:13,404 | ^~ ~~~~~~~~~~~ 2025-09-15T21:58:13,405 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-15T21:58:13,405 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-15T21:58:13,405 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:13,405 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-15T21:58:13,405 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T21:58:13,406 | ^~ ~~~~~~~~~~ 2025-09-15T21:58:13,406 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-15T21:58:13,406 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-15T21:58:13,406 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:13,406 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-15T21:58:13,407 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T21:58:13,407 | ^ 2025-09-15T21:58:13,407 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-15T21:58:13,407 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-15T21:58:13,407 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:13,677 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-39/command_shuffle.o -fopenmp 2025-09-15T21:58:13,954 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c global_basic.c -o build/temp.linux-armv7l-cpython-39/global_basic.o -fopenmp 2025-09-15T21:58:14,100 global_basic.c: In function ‘organize_infile_list’: 2025-09-15T21:58:14,101 global_basic.c:195:20: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2025-09-15T21:58:14,101 195 | while (isspace(*buf)) buf++; 2025-09-15T21:58:14,101 | ^~~~~~~ 2025-09-15T21:58:14,102 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T21:58:14,102 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-15T21:58:14,102 | ~~^ 2025-09-15T21:58:14,102 | | 2025-09-15T21:58:14,103 | long unsigned int 2025-09-15T21:58:14,103 | %u 2025-09-15T21:58:14,103 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-15T21:58:14,103 | ~~~~~~~~~~~ 2025-09-15T21:58:14,104 | | 2025-09-15T21:58:14,104 | size_t {aka unsigned int} 2025-09-15T21:58:14,104 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-15T21:58:14,104 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-15T21:58:14,105 | ~~^ 2025-09-15T21:58:14,105 | | 2025-09-15T21:58:14,105 | long unsigned int 2025-09-15T21:58:14,105 | %u 2025-09-15T21:58:14,106 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-15T21:58:14,106 | ~~~~~~~~~~~ 2025-09-15T21:58:14,106 | | 2025-09-15T21:58:14,106 | size_t {aka unsigned int} 2025-09-15T21:58:14,776 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c iseq2comem.c -o build/temp.linux-armv7l-cpython-39/iseq2comem.o -fopenmp 2025-09-15T21:58:14,928 iseq2comem.c: In function ‘reads2mco’: 2025-09-15T21:58:14,928 iseq2comem.c:156:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-15T21:58:14,929 156 | if (base > TL) { 2025-09-15T21:58:14,929 | ^ 2025-09-15T21:58:14,929 iseq2comem.c:160:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-15T21:58:14,929 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-15T21:58:14,930 | ^~ 2025-09-15T21:58:14,930 iseq2comem.c:160:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-15T21:58:14,930 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-15T21:58:14,930 | ^ 2025-09-15T21:58:14,931 iseq2comem.c: In function ‘fasta2co’: 2025-09-15T21:58:14,931 iseq2comem.c:239:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-15T21:58:14,931 239 | if (base > TL) { 2025-09-15T21:58:14,931 | ^ 2025-09-15T21:58:14,932 iseq2comem.c:243:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-15T21:58:14,932 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-15T21:58:14,932 | ^~ 2025-09-15T21:58:14,932 iseq2comem.c:243:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-15T21:58:14,933 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-15T21:58:14,933 | ^ 2025-09-15T21:58:14,933 iseq2comem.c: In function ‘fastq2co’: 2025-09-15T21:58:14,933 iseq2comem.c:272:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 2025-09-15T21:58:14,934 272 | if (M >= CT_MAX) fprintf(stderr, "fastq2co(): Occurence num should smaller than %d", (int) CT_MAX); 2025-09-15T21:58:14,934 | ^~ 2025-09-15T21:58:14,934 iseq2comem.c:318:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-15T21:58:14,934 318 | if (base > TL) { 2025-09-15T21:58:14,934 | ^ 2025-09-15T21:58:14,935 iseq2comem.c:322:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-15T21:58:14,935 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-15T21:58:14,935 | ^~ 2025-09-15T21:58:14,935 iseq2comem.c:322:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-15T21:58:14,936 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-15T21:58:14,936 | ^ 2025-09-15T21:58:14,936 iseq2comem.c:341:44: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-15T21:58:14,936 341 | if (!((co[n] & CT_MAX) < M)) co[n] |= CT_MAX; 2025-09-15T21:58:14,936 | ^ 2025-09-15T21:58:14,937 iseq2comem.c: In function ‘fastq2koc’: 2025-09-15T21:58:14,937 iseq2comem.c:402:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-15T21:58:14,937 402 | if (base > TL) { 2025-09-15T21:58:14,937 | ^ 2025-09-15T21:58:14,937 iseq2comem.c:406:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-15T21:58:14,938 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-15T21:58:14,938 | ^~ 2025-09-15T21:58:14,938 iseq2comem.c:406:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-15T21:58:14,938 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-15T21:58:14,939 | ^ 2025-09-15T21:58:14,943 iseq2comem.c: In function ‘mt_shortreads2koc’: 2025-09-15T21:58:14,944 iseq2comem.c:582:34: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-15T21:58:14,944 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-15T21:58:14,944 | ^~ 2025-09-15T21:58:14,944 iseq2comem.c:582:58: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-15T21:58:14,945 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-15T21:58:14,945 | ^ 2025-09-15T21:58:16,108 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c mman.c -o build/temp.linux-armv7l-cpython-39/mman.o -fopenmp 2025-09-15T21:58:16,173 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c mytime.c -o build/temp.linux-armv7l-cpython-39/mytime.o -fopenmp 2025-09-15T21:58:16,295 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c pykssd.c -o build/temp.linux-armv7l-cpython-39/pykssd.o -fopenmp 2025-09-15T21:58:16,640 pykssd.c: In function ‘py_dist_dispatch’: 2025-09-15T21:58:16,641 pykssd.c:334:13: warning: unused variable ‘state1’ [-Wunused-variable] 2025-09-15T21:58:16,641 334 | int state1 = dist_dispatch(&dist_opt_val1); 2025-09-15T21:58:16,641 | ^~~~~~ 2025-09-15T21:58:16,642 pykssd.c:396:13: warning: unused variable ‘state2’ [-Wunused-variable] 2025-09-15T21:58:16,643 396 | int state2 = dist_dispatch(&dist_opt_val2); 2025-09-15T21:58:16,643 | ^~~~~~ 2025-09-15T21:58:16,645 pykssd.c:530:13: warning: unused variable ‘state4’ [-Wunused-variable] 2025-09-15T21:58:16,645 530 | int state4 = dist_dispatch(&dist_opt_val4); 2025-09-15T21:58:16,645 | ^~~~~~ 2025-09-15T21:58:16,790 pykssd.c: In function ‘rename_file’: 2025-09-15T21:58:16,790 pykssd.c:44:15: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2025-09-15T21:58:16,790 44 | newfile = strncpy(newfile, p1, len - suffix_len); 2025-09-15T21:58:16,790 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-15T21:58:16,791 pykssd.c:41:15: note: length computed here 2025-09-15T21:58:16,791 41 | int len = strlen(p1); 2025-09-15T21:58:16,791 | ^~~~~~~~~~ 2025-09-15T21:58:17,224 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/co2mco.o build/temp.linux-armv7l-cpython-39/command_composite.o build/temp.linux-armv7l-cpython-39/command_dist.o build/temp.linux-armv7l-cpython-39/command_dist_wrapper.o build/temp.linux-armv7l-cpython-39/command_set.o build/temp.linux-armv7l-cpython-39/command_shuffle.o build/temp.linux-armv7l-cpython-39/global_basic.o build/temp.linux-armv7l-cpython-39/iseq2comem.o build/temp.linux-armv7l-cpython-39/mman.o build/temp.linux-armv7l-cpython-39/mytime.o build/temp.linux-armv7l-cpython-39/pykssd.o -L/usr/lib -lz -o build/lib.linux-armv7l-cpython-39/kssd.cpython-39-arm-linux-gnueabihf.so -fopenmp 2025-09-15T21:58:17,387 building 'nj' extension 2025-09-15T21:58:17,389 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c align.c -o build/temp.linux-armv7l-cpython-39/align.o 2025-09-15T21:58:17,797 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c buildtree.c -o build/temp.linux-armv7l-cpython-39/buildtree.o 2025-09-15T21:58:17,925 buildtree.c: In function ‘UPGMA_buildtree’: 2025-09-15T21:58:17,925 buildtree.c:716:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T21:58:17,926 716 | if (min_of_row_idx[m] == minj || min_of_row_idx[m] == mini) { 2025-09-15T21:58:17,926 | ^~ 2025-09-15T21:58:17,926 buildtree.c:716:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T21:58:17,926 716 | if (min_of_row_idx[m] == minj || min_of_row_idx[m] == mini) { 2025-09-15T21:58:17,927 | ^~ 2025-09-15T21:58:18,485 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c cluster.c -o build/temp.linux-armv7l-cpython-39/cluster.o 2025-09-15T21:58:18,811 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c distancemat.c -o build/temp.linux-armv7l-cpython-39/distancemat.o 2025-09-15T21:58:18,929 distancemat.c: In function ‘clone_DistanceMatrix’: 2025-09-15T21:58:18,930 distancemat.c:226:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-15T21:58:18,930 226 | for( i=0; i < dest->size; i++) { 2025-09-15T21:58:18,930 | ^ 2025-09-15T21:58:18,931 distancemat.c: In function ‘empty_DistanceMatrix’: 2025-09-15T21:58:18,931 distancemat.c:260:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-15T21:58:18,931 260 | for( i=0; i < mat->size; i++) { 2025-09-15T21:58:18,931 | ^ 2025-09-15T21:58:18,932 distancemat.c: In function ‘print_DistanceMatrix’: 2025-09-15T21:58:18,932 distancemat.c:349:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-15T21:58:18,932 349 | for(row=0; row < mat->size; row++) { 2025-09-15T21:58:18,932 | ^ 2025-09-15T21:58:18,932 distancemat.c: In function ‘read_phylip_DistanceMatrix’: 2025-09-15T21:58:18,933 distancemat.c:410:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2025-09-15T21:58:18,933 410 | while(c = fgetc(handle)) { 2025-09-15T21:58:18,933 | ^ 2025-09-15T21:58:19,267 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c pynj.c -o build/temp.linux-armv7l-cpython-39/pynj.o 2025-09-15T21:58:19,636 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c sequence.c -o build/temp.linux-armv7l-cpython-39/sequence.o 2025-09-15T21:58:19,836 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c tree.c -o build/temp.linux-armv7l-cpython-39/tree.o 2025-09-15T21:58:20,523 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c util.c -o build/temp.linux-armv7l-cpython-39/util.o 2025-09-15T21:58:20,696 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/align.o build/temp.linux-armv7l-cpython-39/buildtree.o build/temp.linux-armv7l-cpython-39/cluster.o build/temp.linux-armv7l-cpython-39/distancemat.o build/temp.linux-armv7l-cpython-39/pynj.o build/temp.linux-armv7l-cpython-39/sequence.o build/temp.linux-armv7l-cpython-39/tree.o build/temp.linux-armv7l-cpython-39/util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/nj.cpython-39-arm-linux-gnueabihf.so 2025-09-15T21:58:20,808 building 'dnj' extension 2025-09-15T21:58:20,812 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c bytescale.c -o build/temp.linux-armv7l-cpython-39/bytescale.o -fopenmp 2025-09-15T21:58:20,878 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c dnj.c -o build/temp.linux-armv7l-cpython-39/dnj.o -fopenmp 2025-09-15T21:58:21,002 dnj.c: In function ‘minQpair’: 2025-09-15T21:58:21,003 dnj.c:70:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:21,003 70 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:21,003 | ^~~ 2025-09-15T21:58:21,004 dnj.c:126:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:21,004 126 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:21,004 | ^~~ 2025-09-15T21:58:21,004 dnj.c: In function ‘maxQpair’: 2025-09-15T21:58:21,005 dnj.c:157:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:21,005 157 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:21,005 | ^~~ 2025-09-15T21:58:21,005 dnj.c:213:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:21,006 213 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:21,006 | ^~~ 2025-09-15T21:58:21,006 dnj.c: In function ‘UPGMApair’: 2025-09-15T21:58:21,006 dnj.c:237:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:21,006 237 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:21,007 | ^~~ 2025-09-15T21:58:21,007 dnj.c:284:25: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:21,007 284 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:21,007 | ^~~ 2025-09-15T21:58:21,008 dnj.c:291:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:21,008 291 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:21,008 | ^~~ 2025-09-15T21:58:21,008 dnj.c: In function ‘minQrow’: 2025-09-15T21:58:21,008 dnj.c:374:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:21,009 374 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:21,009 | ^~~ 2025-09-15T21:58:21,009 dnj.c: In function ‘maxQrow’: 2025-09-15T21:58:21,010 dnj.c:435:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:21,010 435 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:21,010 | ^~~ 2025-09-15T21:58:21,011 dnj.c: In function ‘UPGMArow’: 2025-09-15T21:58:21,011 dnj.c:488:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:21,011 488 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:21,011 | ^~~ 2025-09-15T21:58:21,011 dnj.c:494:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:21,012 494 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:21,012 | ^~~ 2025-09-15T21:58:21,013 dnj.c: In function ‘minQ_thread’: 2025-09-15T21:58:21,013 dnj.c:553:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:21,014 553 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:21,014 | ^~~ 2025-09-15T21:58:22,176 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c filebuff.c -o build/temp.linux-armv7l-cpython-39/filebuff.o -fopenmp 2025-09-15T21:58:22,283 filebuff.c: In function ‘BuffgzFileBuff’: 2025-09-15T21:58:22,284 filebuff.c:99:47: warning: comparison of integer expressions of different signedness: ‘uInt’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-15T21:58:22,284 99 | if(status == Z_STREAM_END && strm->avail_out == dest->buffSize) { 2025-09-15T21:58:22,284 | ^~ 2025-09-15T21:58:22,567 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c hclust.c -o build/temp.linux-armv7l-cpython-39/hclust.o -fopenmp 2025-09-15T21:58:22,687 hclust.c: In function ‘minQ’: 2025-09-15T21:58:22,687 hclust.c:364:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T21:58:22,687 364 | while(++i < Q->n) { 2025-09-15T21:58:22,687 | ^ 2025-09-15T21:58:22,688 hclust.c:377:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:22,688 377 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:22,688 | ^~~ 2025-09-15T21:58:22,688 hclust.c: In function ‘maxQ’: 2025-09-15T21:58:22,689 hclust.c:394:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-15T21:58:22,689 394 | while(++i < Q->n) { 2025-09-15T21:58:22,689 | ^ 2025-09-15T21:58:22,689 hclust.c:407:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:22,689 407 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:22,690 | ^~~ 2025-09-15T21:58:24,718 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c matrix.c -o build/temp.linux-armv7l-cpython-39/matrix.o -fopenmp 2025-09-15T21:58:24,841 matrix.c: In function ‘ltdMatrix_popArrange’: 2025-09-15T21:58:24,841 matrix.c:538:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-15T21:58:24,841 538 | if(pos != n) { 2025-09-15T21:58:24,842 | ^~ 2025-09-15T21:58:25,590 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c mman.c -o build/temp.linux-armv7l-cpython-39/mman.o -fopenmp 2025-09-15T21:58:25,651 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c nj.c -o build/temp.linux-armv7l-cpython-39/nj.o -fopenmp 2025-09-15T21:58:25,769 nj.c: In function ‘initQ’: 2025-09-15T21:58:25,769 nj.c:243:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:25,769 243 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:25,770 | ^~~ 2025-09-15T21:58:25,771 nj.c: In function ‘initQ_MN’: 2025-09-15T21:58:25,771 nj.c:358:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:25,771 358 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:25,772 | ^~~ 2025-09-15T21:58:25,775 nj.c: In function ‘minD’: 2025-09-15T21:58:25,775 nj.c:559:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:25,775 559 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:25,776 | ^~~ 2025-09-15T21:58:25,777 nj.c: In function ‘maxD’: 2025-09-15T21:58:25,777 nj.c:642:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:25,777 642 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:25,777 | ^~~ 2025-09-15T21:58:25,781 nj.c: In function ‘minPair’: 2025-09-15T21:58:25,781 nj.c:826:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-15T21:58:25,782 826 | pos <<= sizeof(unsigned) * 8; 2025-09-15T21:58:25,782 | ^~~ 2025-09-15T21:58:27,794 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c nwck.c -o build/temp.linux-armv7l-cpython-39/nwck.o -fopenmp 2025-09-15T21:58:28,265 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c pherror.c -o build/temp.linux-armv7l-cpython-39/pherror.o -fopenmp 2025-09-15T21:58:28,351 pherror.c: In function ‘cfread’: 2025-09-15T21:58:28,352 pherror.c:58:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-15T21:58:28,352 58 | } else if(nmemb == 0 || (nmemb == -1 && (errno & EAGAIN))) { 2025-09-15T21:58:28,353 | ^~ 2025-09-15T21:58:28,442 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c phy.c -o build/temp.linux-armv7l-cpython-39/phy.o -fopenmp 2025-09-15T21:58:29,392 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c pydnj.c -o build/temp.linux-armv7l-cpython-39/pydnj.o -fopenmp 2025-09-15T21:58:29,696 In file included from pydnj.c:11: 2025-09-15T21:58:29,696 dnjheaders/pherror.h:20: warning: "_XOPEN_SOURCE" redefined 2025-09-15T21:58:29,697 20 | #define _XOPEN_SOURCE 600 2025-09-15T21:58:29,697 | 2025-09-15T21:58:29,697 In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, 2025-09-15T21:58:29,698 from /usr/include/limits.h:26, 2025-09-15T21:58:29,698 from /usr/lib/gcc/arm-linux-gnueabihf/10/include/limits.h:195, 2025-09-15T21:58:29,698 from /usr/lib/gcc/arm-linux-gnueabihf/10/include/syslimits.h:7, 2025-09-15T21:58:29,698 from /usr/lib/gcc/arm-linux-gnueabihf/10/include/limits.h:34, 2025-09-15T21:58:29,699 from /usr/include/python3.9/Python.h:11, 2025-09-15T21:58:29,699 from pydnj.c:1: 2025-09-15T21:58:29,699 /usr/include/features.h:207: note: this is the location of the previous definition 2025-09-15T21:58:29,699 207 | # define _XOPEN_SOURCE 700 2025-09-15T21:58:29,700 | 2025-09-15T21:58:29,711 pydnj.c: In function ‘py_build’: 2025-09-15T21:58:29,712 pydnj.c:165:9: warning: implicit declaration of function ‘omp_get_num_procs’ [-Wimplicit-function-declaration] 2025-09-15T21:58:29,712 165 | p = omp_get_num_procs(); 2025-09-15T21:58:29,713 | ^~~~~~~~~~~~~~~~~ 2025-09-15T21:58:29,893 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c qseqs.c -o build/temp.linux-armv7l-cpython-39/qseqs.o -fopenmp 2025-09-15T21:58:30,083 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c str.c -o build/temp.linux-armv7l-cpython-39/str.o -fopenmp 2025-09-15T21:58:30,193 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c tmp.c -o build/temp.linux-armv7l-cpython-39/tmp.o -fopenmp 2025-09-15T21:58:30,379 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c vector.c -o build/temp.linux-armv7l-cpython-39/vector.o -fopenmp 2025-09-15T21:58:30,537 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/bytescale.o build/temp.linux-armv7l-cpython-39/dnj.o build/temp.linux-armv7l-cpython-39/filebuff.o build/temp.linux-armv7l-cpython-39/hclust.o build/temp.linux-armv7l-cpython-39/matrix.o build/temp.linux-armv7l-cpython-39/mman.o build/temp.linux-armv7l-cpython-39/nj.o build/temp.linux-armv7l-cpython-39/nwck.o build/temp.linux-armv7l-cpython-39/pherror.o build/temp.linux-armv7l-cpython-39/phy.o build/temp.linux-armv7l-cpython-39/pydnj.o build/temp.linux-armv7l-cpython-39/qseqs.o build/temp.linux-armv7l-cpython-39/str.o build/temp.linux-armv7l-cpython-39/tmp.o build/temp.linux-armv7l-cpython-39/vector.o -L/usr/lib -lz -o build/lib.linux-armv7l-cpython-39/dnj.cpython-39-arm-linux-gnueabihf.so -fopenmp 2025-09-15T21:58:30,714 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-15T21:58:30,714 !! 2025-09-15T21:58:30,715 ******************************************************************************** 2025-09-15T21:58:30,715 Please avoid running ``setup.py`` directly. 2025-09-15T21:58:30,715 Instead, use pypa/build, pypa/installer or other 2025-09-15T21:58:30,715 standards-based tools. 2025-09-15T21:58:30,715 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-15T21:58:30,716 or your builds will no longer be supported. 2025-09-15T21:58:30,716 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-15T21:58:30,716 ******************************************************************************** 2025-09-15T21:58:30,716 !! 2025-09-15T21:58:30,716 self.initialize_options() 2025-09-15T21:58:30,742 installing to build/bdist.linux-armv7l/wheel 2025-09-15T21:58:30,743 running install 2025-09-15T21:58:30,764 running install_lib 2025-09-15T21:58:30,796 creating build/bdist.linux-armv7l/wheel 2025-09-15T21:58:30,798 copying build/lib.linux-armv7l-cpython-39/kssdtree.py -> build/bdist.linux-armv7l/wheel/. 2025-09-15T21:58:30,801 copying build/lib.linux-armv7l-cpython-39/nj.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2025-09-15T21:58:30,806 copying build/lib.linux-armv7l-cpython-39/kssd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2025-09-15T21:58:30,815 copying build/lib.linux-armv7l-cpython-39/toolutils.py -> build/bdist.linux-armv7l/wheel/. 2025-09-15T21:58:30,817 copying build/lib.linux-armv7l-cpython-39/dnj.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2025-09-15T21:58:30,825 running install_egg_info 2025-09-15T21:58:30,859 Copying kssdtree.egg-info to build/bdist.linux-armv7l/wheel/./kssdtree-2.0.6-py3.9.egg-info 2025-09-15T21:58:30,871 running install_scripts 2025-09-15T21:58:30,943 creating build/bdist.linux-armv7l/wheel/kssdtree-2.0.6.dist-info/WHEEL 2025-09-15T21:58:30,947 creating '/tmp/pip-wheel-33mlrz_s/kssdtree-2.0.6-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-15T21:58:31,035 adding 'dnj.cpython-39-arm-linux-gnueabihf.so' 2025-09-15T21:58:31,130 adding 'kssd.cpython-39-arm-linux-gnueabihf.so' 2025-09-15T21:58:31,135 adding 'kssdtree.py' 2025-09-15T21:58:31,157 adding 'nj.cpython-39-arm-linux-gnueabihf.so' 2025-09-15T21:58:31,161 adding 'toolutils.py' 2025-09-15T21:58:31,163 adding 'kssdtree-2.0.6.dist-info/METADATA' 2025-09-15T21:58:31,165 adding 'kssdtree-2.0.6.dist-info/WHEEL' 2025-09-15T21:58:31,166 adding 'kssdtree-2.0.6.dist-info/dependency_links.txt' 2025-09-15T21:58:31,167 adding 'kssdtree-2.0.6.dist-info/top_level.txt' 2025-09-15T21:58:31,168 adding 'kssdtree-2.0.6.dist-info/RECORD' 2025-09-15T21:58:31,174 removing build/bdist.linux-armv7l/wheel 2025-09-15T21:58:31,299 Building wheel for kssdtree (setup.py): finished with status 'done' 2025-09-15T21:58:31,305 Created wheel for kssdtree: filename=kssdtree-2.0.6-cp39-cp39-linux_armv7l.whl size=377811 sha256=6cc8e863f6316aa656790c5fc8a7bb42bbb33d4db4a6256f3e30131b023d5e41 2025-09-15T21:58:31,305 Stored in directory: /tmp/pip-ephem-wheel-cache-d4aywe6q/wheels/fd/c9/c3/2dcfb6baf3f19b2378110c625c80dc8243f3935f98582def68 2025-09-15T21:58:31,313 Successfully built kssdtree 2025-09-15T21:58:31,327 Removed build tracker: '/tmp/pip-req-tracker-k_45n2vs'