2025-09-16T12:34:08,637 Created temporary directory: /tmp/pip-ephem-wheel-cache-fyu0wzpm 2025-09-16T12:34:08,640 Created temporary directory: /tmp/pip-req-tracker-amh711yt 2025-09-16T12:34:08,640 Initialized build tracking at /tmp/pip-req-tracker-amh711yt 2025-09-16T12:34:08,640 Created build tracker: /tmp/pip-req-tracker-amh711yt 2025-09-16T12:34:08,640 Entered build tracker: /tmp/pip-req-tracker-amh711yt 2025-09-16T12:34:08,641 Created temporary directory: /tmp/pip-wheel-egjl7fle 2025-09-16T12:34:08,661 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple, https://www.piwheels.org/simple 2025-09-16T12:34:08,662 2 location(s) to search for versions of kssdtree: 2025-09-16T12:34:08,662 * https://pypi.org/simple/kssdtree/ 2025-09-16T12:34:08,662 * https://www.piwheels.org/simple/kssdtree/ 2025-09-16T12:34:08,663 Fetching project page and analyzing links: https://pypi.org/simple/kssdtree/ 2025-09-16T12:34:08,663 Getting page https://pypi.org/simple/kssdtree/ 2025-09-16T12:34:08,665 Found index url https://pypi.org/simple 2025-09-16T12:34:08,669 Starting new HTTPS connection (1): pypi.org:443 2025-09-16T12:34:08,711 https://pypi.org:443 "GET /simple/kssdtree/ HTTP/1.1" 200 1802 2025-09-16T12:34:08,785 Found link https://files.pythonhosted.org/packages/d5/1e/9e5c5945a44bb40002d1c259f734a531999fa6e87db89fe7c7ddcfc583cc/kssdtree-1.1.1.tar.gz#sha256=bf3cab86e89b6b582ba9ad245264808902efb41c875aaf6d730fbc10cb019cde (from https://pypi.org/simple/kssdtree/), version: 1.1.1 2025-09-16T12:34:08,785 Found link https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz#sha256=42effc7c897303a981c9746cd854a6a4fd5ff5905b46c20fbc6ce1f7d45c3ea7 (from https://pypi.org/simple/kssdtree/), version: 1.1.2 2025-09-16T12:34:08,786 Found link https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz#sha256=0ffe4a29d67de8ca6c6cfcca8b7fd9d764b46c62c8d8d0a4bda87cd7a0709775 (from https://pypi.org/simple/kssdtree/), version: 1.1.3 2025-09-16T12:34:08,786 Found link https://files.pythonhosted.org/packages/20/ea/b0301924e3f7d367cbb7b8da66837dba9af2a332bf56ed35e03a33faee76/kssdtree-1.1.4.tar.gz#sha256=741fd7c1babd190fd158a8bd59c22ee769efb8f675d709537c387effb05b6049 (from https://pypi.org/simple/kssdtree/), version: 1.1.4 2025-09-16T12:34:08,786 Found link https://files.pythonhosted.org/packages/41/65/ed35110b84bc0dd02b9add0104f10160754d2ea0882191767d512146a884/kssdtree-1.1.6.tar.gz#sha256=e1a0baf89155dd739cae854bebc7f95220d4b39d8d8e72f8c9165ea3be628406 (from https://pypi.org/simple/kssdtree/), version: 1.1.6 2025-09-16T12:34:08,787 Found link https://files.pythonhosted.org/packages/cd/4b/d886cbcc573ff0969da7d9c756049925b86141e60ee6708dfbbe0644d008/kssdtree-1.1.7.tar.gz#sha256=1662c719840f11eb8d59f87b4a094387e210884c1c563124c7d2446ab45b77e0 (from https://pypi.org/simple/kssdtree/), version: 1.1.7 2025-09-16T12:34:08,787 Found link https://files.pythonhosted.org/packages/7e/8a/a62c8adc92df69ab8cb242827ee64a3e2b6d5c89b83425785dd00605af17/kssdtree-1.1.8.tar.gz#sha256=13e9d672c59aee331866ef4bacade5dce00cc0786e76216cd505c61a745f2d9e (from https://pypi.org/simple/kssdtree/), version: 1.1.8 2025-09-16T12:34:08,787 Found link https://files.pythonhosted.org/packages/da/db/e458cca6427752c05428d2378ccdee631d32f760174fdaba65f73125e71b/kssdtree-1.1.9.tar.gz#sha256=7d2369e6115ef2cfa4661b11353ad5d8c3f240da20c005ec0e0b7388ebc3b1df (from https://pypi.org/simple/kssdtree/), version: 1.1.9 2025-09-16T12:34:08,787 Found link https://files.pythonhosted.org/packages/9d/47/017180a30e73e421372377cbe6d01c5e51a5108ea2177f20ccd7d283f8d1/kssdtree-2.0.0.tar.gz#sha256=d73856db5284551744e106217cef97b92bb726709da565b8bb360e0787ed81c6 (from https://pypi.org/simple/kssdtree/), version: 2.0.0 2025-09-16T12:34:08,788 Found link https://files.pythonhosted.org/packages/ba/39/d443cac955912a0371c93b797311cb9ec3a8d6ee0a5d7673376d826aa6b2/kssdtree-2.0.1.tar.gz#sha256=a0e75875f56a10b5d752855fefdb5fd136f9e555efbf87e1520fb590fa65fe7b (from https://pypi.org/simple/kssdtree/), version: 2.0.1 2025-09-16T12:34:08,788 Found link https://files.pythonhosted.org/packages/2e/32/e53c0e3735cbc913b2c96b4e0e1c1005fe816a4d71b38b80cdcfb5c67fa8/kssdtree-2.0.2.tar.gz#sha256=9a944c9e7de930f6bd7aae479f03dc38a79aaa7f1e82432936b7b21340775a03 (from https://pypi.org/simple/kssdtree/), version: 2.0.2 2025-09-16T12:34:08,788 Found link https://files.pythonhosted.org/packages/c0/0f/effc10c8e76dbe3b9a35a4b4d9e65a0a889ee805e10334541c3ca7ae3b94/kssdtree-2.0.3.tar.gz#sha256=9efac23369d5f14bca36a1926050821eb9a0cfde618ad226bdb10866a434e1c4 (from https://pypi.org/simple/kssdtree/), version: 2.0.3 2025-09-16T12:34:08,789 Found link https://files.pythonhosted.org/packages/fc/8d/d3790baa2f2f0a01c913005b94a82dc13ef601e7015e662ccff94bb1b458/kssdtree-2.0.4.tar.gz#sha256=e93c66915a3a20a269f05968eaa70e2d88018ca3e6973a85460c388b6b2a09d8 (from https://pypi.org/simple/kssdtree/), version: 2.0.4 2025-09-16T12:34:08,789 Found link https://files.pythonhosted.org/packages/b5/f8/19480a4c57704944f973ebf534f9582054949cca20170a33c6f874974440/kssdtree-2.0.5.tar.gz#sha256=954ce08a38bdae1f847388775c3dbdff1f0e8a68dd0bca5d43a98ab5289fee61 (from https://pypi.org/simple/kssdtree/), version: 2.0.5 2025-09-16T12:34:08,789 Found link https://files.pythonhosted.org/packages/46/ef/2d920d5d2fceded48c7add363e04f49ae85414bcd4360e1295d6fddc4a24/kssdtree-2.0.6.tar.gz#sha256=68b0905094f99ceff73d8186c5b005906b1b8fcf9e70fd0ce266dd700cce1b50 (from https://pypi.org/simple/kssdtree/), version: 2.0.6 2025-09-16T12:34:08,790 Found link https://files.pythonhosted.org/packages/9c/1c/c6b3f05465d145856ac992328bd59e776286a59b120254620c1dbffcf67f/kssdtree-2.0.7.tar.gz#sha256=f304750bc48a344cd83c6b62e93a729299be609f392a3e91ec4c8af460980e90 (from https://pypi.org/simple/kssdtree/), version: 2.0.7 2025-09-16T12:34:08,790 Found link https://files.pythonhosted.org/packages/82/9b/dac2af6572f0c4421e5ba8341dcfddac466de30c62acfa019d9ef70b2670/kssdtree-2.0.8.tar.gz#sha256=8c6c32364cbdb22c18db2dd6a984018e8c6bbc55b25f384f12c5647bb142c1f0 (from https://pypi.org/simple/kssdtree/), version: 2.0.8 2025-09-16T12:34:08,790 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdtree/ 2025-09-16T12:34:08,790 Getting page https://www.piwheels.org/simple/kssdtree/ 2025-09-16T12:34:08,791 Found index url https://www.piwheels.org/simple 2025-09-16T12:34:08,793 Starting new HTTPS connection (1): www.piwheels.org:443 2025-09-16T12:34:08,851 https://www.piwheels.org:443 "GET /simple/kssdtree/ HTTP/1.1" 200 2161 2025-09-16T12:34:08,889 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv6l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,889 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv7l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,889 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv6l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,889 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv7l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,890 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp311-cp311-linux_armv6l.whl#sha256=e1e02281e0fc8ed3b80b596a811ca2a9b50cb7affb3649479228d59c074c1f94 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,890 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp311-cp311-linux_armv7l.whl#sha256=e1e02281e0fc8ed3b80b596a811ca2a9b50cb7affb3649479228d59c074c1f94 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,890 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp39-cp39-linux_armv6l.whl#sha256=6cc8e863f6316aa656790c5fc8a7bb42bbb33d4db4a6256f3e30131b023d5e41 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,890 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp39-cp39-linux_armv7l.whl#sha256=6cc8e863f6316aa656790c5fc8a7bb42bbb33d4db4a6256f3e30131b023d5e41 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,891 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp311-cp311-linux_armv6l.whl#sha256=cecf3000ed0ffcd720412023d8de2f213356363c01aa3193441c040ed34353d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,891 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp311-cp311-linux_armv7l.whl#sha256=cecf3000ed0ffcd720412023d8de2f213356363c01aa3193441c040ed34353d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,891 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp39-cp39-linux_armv6l.whl#sha256=db08595adc89347b61965ba36e918055e8a0dc5f6a2b0bdfe16133eb363412d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,891 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp39-cp39-linux_armv7l.whl#sha256=db08595adc89347b61965ba36e918055e8a0dc5f6a2b0bdfe16133eb363412d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,892 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp311-cp311-linux_armv6l.whl#sha256=97a69f799c2d1b7024a9033b8a1e3fc17af4748a1ed726f52397d884303eb870 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,892 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp311-cp311-linux_armv7l.whl#sha256=97a69f799c2d1b7024a9033b8a1e3fc17af4748a1ed726f52397d884303eb870 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,892 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp39-cp39-linux_armv6l.whl#sha256=00938a03bead64e58bc1928832b7952b04d844e79b41da12160490c7edbb9e9f (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,892 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp39-cp39-linux_armv7l.whl#sha256=00938a03bead64e58bc1928832b7952b04d844e79b41da12160490c7edbb9e9f (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,892 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp311-cp311-linux_armv6l.whl#sha256=d70b4b00c6bf4ff5b294b9ad2594aa1e32981df4b9869be9d13aafa0ff614bc3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,893 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp311-cp311-linux_armv7l.whl#sha256=d70b4b00c6bf4ff5b294b9ad2594aa1e32981df4b9869be9d13aafa0ff614bc3 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,893 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp39-cp39-linux_armv6l.whl#sha256=f629766f3426bb8a83c6f4adca8b02b03cb85452c129c9694cef65efd715fabd (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,893 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp39-cp39-linux_armv7l.whl#sha256=f629766f3426bb8a83c6f4adca8b02b03cb85452c129c9694cef65efd715fabd (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,893 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp311-cp311-linux_armv6l.whl#sha256=ae7417e30efd12d8c6800d4167141c94a93f1ce51afd5ae9196cdfb6057ca7d2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,894 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp311-cp311-linux_armv7l.whl#sha256=ae7417e30efd12d8c6800d4167141c94a93f1ce51afd5ae9196cdfb6057ca7d2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,894 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv6l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,894 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=131de046d905a575216e4344f66d988df06c39a828f970e791ab2dd8ce7c204c (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,895 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.9-cp311-cp311-linux_armv6l.whl#sha256=d4c397f5fcb0af48dbb11b9fb7d7b399cc180d65355b794a8fcc7327e9a7dde1 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,896 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.9-cp311-cp311-linux_armv7l.whl#sha256=d4c397f5fcb0af48dbb11b9fb7d7b399cc180d65355b794a8fcc7327e9a7dde1 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,896 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.9-cp39-cp39-linux_armv6l.whl#sha256=ab11dc15aca2923fe0d60bf11deb134bed4df89280b4ce40ca8e9bf3ca46b168 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,896 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.9-cp39-cp39-linux_armv7l.whl#sha256=ab11dc15aca2923fe0d60bf11deb134bed4df89280b4ce40ca8e9bf3ca46b168 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,896 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp39-cp39-linux_armv6l.whl#sha256=6b3f5b0e827056c7b589f4fb02c353408efa5892ef4df1c8a54b4cb30331754a (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,897 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp39-cp39-linux_armv7l.whl#sha256=6b3f5b0e827056c7b589f4fb02c353408efa5892ef4df1c8a54b4cb30331754a (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,897 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv6l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,897 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv7l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,897 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp311-cp311-linux_armv6l.whl#sha256=388a8dabd657ea83e6d22b52300337c74e9d84e506806cfd4d2a76eb98777e17 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,897 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp311-cp311-linux_armv7l.whl#sha256=388a8dabd657ea83e6d22b52300337c74e9d84e506806cfd4d2a76eb98777e17 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,898 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp39-cp39-linux_armv6l.whl#sha256=e1df896451d30c12e01aceb3eb91f0f7dfe0ee6f16fd66864fdefbc21cc54856 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,898 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp39-cp39-linux_armv7l.whl#sha256=e1df896451d30c12e01aceb3eb91f0f7dfe0ee6f16fd66864fdefbc21cc54856 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,898 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv6l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,898 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv7l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,898 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv6l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,899 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv7l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,899 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv6l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,899 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv7l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,899 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,899 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,900 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,900 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,900 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,900 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,900 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv6l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,901 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv7l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,901 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,901 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,901 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,902 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,902 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,902 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,902 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,902 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,903 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv6l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,903 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv7l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,903 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,903 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,903 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,904 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2025-09-16T12:34:08,934 Given no hashes to check 1 links for project 'kssdtree': discarding no candidates 2025-09-16T12:34:08,967 Collecting kssdtree==2.0.7 2025-09-16T12:34:08,968 Created temporary directory: /tmp/pip-unpack-w6guqc8i 2025-09-16T12:34:08,972 Starting new HTTPS connection (1): files.pythonhosted.org:443 2025-09-16T12:34:09,020 https://files.pythonhosted.org:443 "GET /packages/9c/1c/c6b3f05465d145856ac992328bd59e776286a59b120254620c1dbffcf67f/kssdtree-2.0.7.tar.gz HTTP/1.1" 200 113504 2025-09-16T12:34:09,021 Downloading kssdtree-2.0.7.tar.gz (113 kB) 2025-09-16T12:34:09,197 Added kssdtree==2.0.7 from https://files.pythonhosted.org/packages/9c/1c/c6b3f05465d145856ac992328bd59e776286a59b120254620c1dbffcf67f/kssdtree-2.0.7.tar.gz#sha256=f304750bc48a344cd83c6b62e93a729299be609f392a3e91ec4c8af460980e90 to build tracker '/tmp/pip-req-tracker-amh711yt' 2025-09-16T12:34:09,198 Running setup.py (path:/tmp/pip-wheel-egjl7fle/kssdtree_31bccbb70e57498e93347e784068e78f/setup.py) egg_info for package kssdtree 2025-09-16T12:34:09,199 Created temporary directory: /tmp/pip-pip-egg-info-3g2zd_f1 2025-09-16T12:34:09,199 Running command python setup.py egg_info 2025-09-16T12:34:10,120 running egg_info 2025-09-16T12:34:10,149 creating /tmp/pip-pip-egg-info-3g2zd_f1/kssdtree.egg-info 2025-09-16T12:34:10,150 writing /tmp/pip-pip-egg-info-3g2zd_f1/kssdtree.egg-info/PKG-INFO 2025-09-16T12:34:10,154 writing dependency_links to /tmp/pip-pip-egg-info-3g2zd_f1/kssdtree.egg-info/dependency_links.txt 2025-09-16T12:34:10,156 writing requirements to /tmp/pip-pip-egg-info-3g2zd_f1/kssdtree.egg-info/requires.txt 2025-09-16T12:34:10,157 writing top-level names to /tmp/pip-pip-egg-info-3g2zd_f1/kssdtree.egg-info/top_level.txt 2025-09-16T12:34:10,158 writing manifest file '/tmp/pip-pip-egg-info-3g2zd_f1/kssdtree.egg-info/SOURCES.txt' 2025-09-16T12:34:10,270 reading manifest file '/tmp/pip-pip-egg-info-3g2zd_f1/kssdtree.egg-info/SOURCES.txt' 2025-09-16T12:34:10,272 reading manifest template 'MANIFEST.in' 2025-09-16T12:34:10,291 writing manifest file '/tmp/pip-pip-egg-info-3g2zd_f1/kssdtree.egg-info/SOURCES.txt' 2025-09-16T12:34:10,382 Source in /tmp/pip-wheel-egjl7fle/kssdtree_31bccbb70e57498e93347e784068e78f has version 2.0.7, which satisfies requirement kssdtree==2.0.7 from https://files.pythonhosted.org/packages/9c/1c/c6b3f05465d145856ac992328bd59e776286a59b120254620c1dbffcf67f/kssdtree-2.0.7.tar.gz#sha256=f304750bc48a344cd83c6b62e93a729299be609f392a3e91ec4c8af460980e90 2025-09-16T12:34:10,383 Removed kssdtree==2.0.7 from https://files.pythonhosted.org/packages/9c/1c/c6b3f05465d145856ac992328bd59e776286a59b120254620c1dbffcf67f/kssdtree-2.0.7.tar.gz#sha256=f304750bc48a344cd83c6b62e93a729299be609f392a3e91ec4c8af460980e90 from build tracker '/tmp/pip-req-tracker-amh711yt' 2025-09-16T12:34:10,418 Created temporary directory: /tmp/pip-unpack-fcndenww 2025-09-16T12:34:10,419 Building wheels for collected packages: kssdtree 2025-09-16T12:34:10,422 Created temporary directory: /tmp/pip-wheel-ezqzxk17 2025-09-16T12:34:10,423 Building wheel for kssdtree (setup.py): started 2025-09-16T12:34:10,423 Destination directory: /tmp/pip-wheel-ezqzxk17 2025-09-16T12:34:10,423 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-egjl7fle/kssdtree_31bccbb70e57498e93347e784068e78f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-egjl7fle/kssdtree_31bccbb70e57498e93347e784068e78f/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ezqzxk17 2025-09-16T12:34:11,285 running bdist_wheel 2025-09-16T12:34:11,420 running build 2025-09-16T12:34:11,421 running build_py 2025-09-16T12:34:11,450 creating build/lib.linux-armv7l-cpython-39 2025-09-16T12:34:11,452 copying kssdtree.py -> build/lib.linux-armv7l-cpython-39 2025-09-16T12:34:11,454 copying toolutils.py -> build/lib.linux-armv7l-cpython-39 2025-09-16T12:34:11,456 running egg_info 2025-09-16T12:34:11,484 writing kssdtree.egg-info/PKG-INFO 2025-09-16T12:34:11,487 writing dependency_links to kssdtree.egg-info/dependency_links.txt 2025-09-16T12:34:11,489 writing requirements to kssdtree.egg-info/requires.txt 2025-09-16T12:34:11,490 writing top-level names to kssdtree.egg-info/top_level.txt 2025-09-16T12:34:11,519 reading manifest file 'kssdtree.egg-info/SOURCES.txt' 2025-09-16T12:34:11,525 reading manifest template 'MANIFEST.in' 2025-09-16T12:34:11,544 writing manifest file 'kssdtree.egg-info/SOURCES.txt' 2025-09-16T12:34:11,546 running build_ext 2025-09-16T12:34:11,993 building 'kssd' extension 2025-09-16T12:34:11,994 creating build/temp.linux-armv7l-cpython-39 2025-09-16T12:34:11,996 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c co2mco.c -o build/temp.linux-armv7l-cpython-39/co2mco.o -fopenmp 2025-09-16T12:34:12,158 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2025-09-16T12:34:12,158 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-16T12:34:12,159 109 | for (unsigned int i = 0; i < comp_num; i++) { 2025-09-16T12:34:12,159 | ^ 2025-09-16T12:34:12,161 co2mco.c: In function ‘co2unitllmco’: 2025-09-16T12:34:12,161 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-16T12:34:12,162 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2025-09-16T12:34:12,162 | ^ 2025-09-16T12:34:12,782 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_composite.c -o build/temp.linux-armv7l-cpython-39/command_composite.o -fopenmp 2025-09-16T12:34:13,079 command_composite.c: In function ‘get_species_abundance’: 2025-09-16T12:34:13,080 command_composite.c:32:34: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-16T12:34:13,080 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2025-09-16T12:34:13,080 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:13,080 command_composite.c:34:34: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-16T12:34:13,081 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2025-09-16T12:34:13,081 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:13,081 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:13,081 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-16T12:34:13,082 | ^ 2025-09-16T12:34:13,082 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2025-09-16T12:34:13,082 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-16T12:34:13,082 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:13,082 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:13,083 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-16T12:34:13,083 | ^ 2025-09-16T12:34:13,083 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2025-09-16T12:34:13,083 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-16T12:34:13,084 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:13,084 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:13,084 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-16T12:34:13,084 | ^ 2025-09-16T12:34:13,084 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2025-09-16T12:34:13,085 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-16T12:34:13,085 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:13,085 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:13,085 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-16T12:34:13,086 | ^ 2025-09-16T12:34:13,086 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2025-09-16T12:34:13,086 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-16T12:34:13,086 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:13,086 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:13,087 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-16T12:34:13,087 | ^ 2025-09-16T12:34:13,087 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 261) into a destination of size 256 2025-09-16T12:34:13,087 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-16T12:34:13,088 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:13,318 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_dist.c -o build/temp.linux-armv7l-cpython-39/command_dist.o -fopenmp 2025-09-16T12:34:13,516 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-16T12:34:13,517 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-16T12:34:13,517 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-16T12:34:13,517 | ~~^ 2025-09-16T12:34:13,518 | | 2025-09-16T12:34:13,518 | long unsigned int 2025-09-16T12:34:13,518 | %u 2025-09-16T12:34:13,518 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-16T12:34:13,518 | ~~~~~~~ 2025-09-16T12:34:13,518 | | 2025-09-16T12:34:13,519 | size_t {aka unsigned int} 2025-09-16T12:34:13,520 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-16T12:34:13,520 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-16T12:34:13,520 | ~~^ 2025-09-16T12:34:13,520 | | 2025-09-16T12:34:13,521 | long unsigned int 2025-09-16T12:34:13,521 | %u 2025-09-16T12:34:13,521 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-16T12:34:13,521 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-16T12:34:13,521 | ~~~~~~~~~ 2025-09-16T12:34:13,522 | | 2025-09-16T12:34:13,522 | size_t {aka unsigned int} 2025-09-16T12:34:13,523 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-16T12:34:13,523 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-16T12:34:13,523 | ~~^ 2025-09-16T12:34:13,524 | | 2025-09-16T12:34:13,524 | long unsigned int 2025-09-16T12:34:13,524 | %u 2025-09-16T12:34:13,524 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-16T12:34:13,524 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-16T12:34:13,525 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:13,525 | | 2025-09-16T12:34:13,525 | unsigned int 2025-09-16T12:34:13,526 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-16T12:34:13,526 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2025-09-16T12:34:13,526 | ^ 2025-09-16T12:34:13,532 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-16T12:34:13,533 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-16T12:34:13,533 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-16T12:34:13,534 | ~~^ ~~~~~~~ 2025-09-16T12:34:13,534 | | | 2025-09-16T12:34:13,534 | long unsigned int size_t {aka unsigned int} 2025-09-16T12:34:13,534 | %u 2025-09-16T12:34:13,535 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-16T12:34:13,535 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-16T12:34:13,535 | ~~^ 2025-09-16T12:34:13,535 | | 2025-09-16T12:34:13,535 | long unsigned int 2025-09-16T12:34:13,536 | %u 2025-09-16T12:34:13,536 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-16T12:34:13,536 | ~~~~~~~~~ 2025-09-16T12:34:13,536 | | 2025-09-16T12:34:13,536 | size_t {aka unsigned int} 2025-09-16T12:34:13,536 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-16T12:34:13,537 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-16T12:34:13,537 | ~~^ 2025-09-16T12:34:13,537 | | 2025-09-16T12:34:13,537 | long unsigned int 2025-09-16T12:34:13,538 | %u 2025-09-16T12:34:13,538 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-16T12:34:13,538 865 | (size_t) b * unitsz_distf_mapped); 2025-09-16T12:34:13,538 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:13,538 | | 2025-09-16T12:34:13,538 | unsigned int 2025-09-16T12:34:13,539 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2025-09-16T12:34:13,539 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2025-09-16T12:34:13,539 | ^~~~~~~ 2025-09-16T12:34:13,539 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2025-09-16T12:34:13,539 809 | struct stat cbd_fcode_stat; 2025-09-16T12:34:13,539 | ^~~~~~~~~~~~~~ 2025-09-16T12:34:13,540 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2025-09-16T12:34:13,540 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-16T12:34:13,540 | ^~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:13,540 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2025-09-16T12:34:13,540 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-16T12:34:13,541 | ^~~~~~~~~~~~~~~~~ 2025-09-16T12:34:13,546 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-16T12:34:13,547 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-16T12:34:13,547 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-16T12:34:13,548 | ~~^ 2025-09-16T12:34:13,548 | | 2025-09-16T12:34:13,548 | long unsigned int 2025-09-16T12:34:13,548 | %u 2025-09-16T12:34:13,548 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-16T12:34:13,548 | ~~~~~~~ 2025-09-16T12:34:13,548 | | 2025-09-16T12:34:13,549 | size_t {aka unsigned int} 2025-09-16T12:34:13,549 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-16T12:34:13,549 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-16T12:34:13,549 | ~~^ 2025-09-16T12:34:13,549 | | 2025-09-16T12:34:13,550 | long unsigned int 2025-09-16T12:34:13,550 | %u 2025-09-16T12:34:13,550 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-16T12:34:13,550 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-16T12:34:13,550 | ~~~~~~~~~ 2025-09-16T12:34:13,550 | | 2025-09-16T12:34:13,550 | size_t {aka unsigned int} 2025-09-16T12:34:13,551 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-16T12:34:13,551 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-16T12:34:13,551 | ~~^ 2025-09-16T12:34:13,551 | | 2025-09-16T12:34:13,552 | long unsigned int 2025-09-16T12:34:13,552 | %u 2025-09-16T12:34:13,552 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-16T12:34:13,552 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-16T12:34:13,552 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:13,553 | | 2025-09-16T12:34:13,553 | unsigned int 2025-09-16T12:34:13,553 command_dist.c:1034:27: warning: comparison of integer expressions of different signedness: ‘__off_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare] 2025-09-16T12:34:13,553 1034 | if (s.st_size > sizeof(gidobj_t) * MCOMM_SZ) mco_mem = (gidobj_t *) realloc(mco_mem, s.st_size); 2025-09-16T12:34:13,553 | ^ 2025-09-16T12:34:13,556 command_dist.c: In function ‘mco_co_dist_core’: 2025-09-16T12:34:13,556 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-16T12:34:13,557 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2025-09-16T12:34:13,557 | ^ 2025-09-16T12:34:13,562 command_dist.c: In function ‘koc_dist_print_nobin’: 2025-09-16T12:34:13,563 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-16T12:34:13,563 1239 | for (int rid = 0; rid < ref_num; rid++) 2025-09-16T12:34:13,563 | ^ 2025-09-16T12:34:13,564 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-16T12:34:13,565 1245 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-16T12:34:13,565 | ^ 2025-09-16T12:34:13,570 command_dist.c: In function ‘dist_print_nobin’: 2025-09-16T12:34:13,571 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-16T12:34:13,571 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2025-09-16T12:34:13,571 | ^ 2025-09-16T12:34:13,573 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-16T12:34:13,573 1356 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-16T12:34:13,573 | ^ 2025-09-16T12:34:13,574 command_dist.c:1380:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-16T12:34:13,575 1380 | for (int rid = 0; rid < ref_num; rid++) 2025-09-16T12:34:13,575 | ^ 2025-09-16T12:34:13,575 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-16T12:34:13,576 1382 | for (int rid = 0; rid < ref_num; rid++) 2025-09-16T12:34:13,576 | ^ 2025-09-16T12:34:13,831 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2025-09-16T12:34:13,831 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2025-09-16T12:34:13,832 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2025-09-16T12:34:13,832 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:13,832 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2025-09-16T12:34:13,832 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2025-09-16T12:34:13,833 | ^~~~~~~~~~~~ 2025-09-16T12:34:14,557 command_dist.c: In function ‘get_dim_shuffle’: 2025-09-16T12:34:14,558 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2025-09-16T12:34:14,558 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-16T12:34:14,558 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:14,558 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2025-09-16T12:34:14,559 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-16T12:34:14,559 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:15,349 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-16T12:34:15,349 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:15,350 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-16T12:34:15,350 | ^~ ~~~~~~~~~ 2025-09-16T12:34:15,350 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-16T12:34:15,350 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-16T12:34:15,350 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:15,351 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-16T12:34:15,351 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-16T12:34:15,351 | ^~~~~~~~~~~~~~~ 2025-09-16T12:34:15,351 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-16T12:34:15,351 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-16T12:34:15,352 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:15,352 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-16T12:34:15,352 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-16T12:34:15,353 | ^~~~~~~~~~~ 2025-09-16T12:34:15,353 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-16T12:34:15,353 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-16T12:34:15,353 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:15,353 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-16T12:34:15,353 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-16T12:34:15,354 | ^~~~~ 2025-09-16T12:34:15,354 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-16T12:34:15,354 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-16T12:34:15,354 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:15,562 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-16T12:34:15,562 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:15,563 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-16T12:34:15,563 | ^~ ~~~~~~~~~ 2025-09-16T12:34:15,563 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-16T12:34:15,563 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-16T12:34:15,563 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:15,564 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-16T12:34:15,564 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-16T12:34:15,564 | ^~~~~~~~~~~~~~~ 2025-09-16T12:34:15,564 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-16T12:34:15,565 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-16T12:34:15,565 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:15,565 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-16T12:34:15,565 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-16T12:34:15,565 | ^~~~~~~~~~~~~ 2025-09-16T12:34:15,566 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-16T12:34:15,566 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-16T12:34:15,566 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:15,567 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:15,567 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-16T12:34:15,567 | ^ 2025-09-16T12:34:15,567 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2025-09-16T12:34:15,567 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-16T12:34:15,568 | ^~~~~~~~~~ 2025-09-16T12:34:15,568 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-16T12:34:15,568 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-16T12:34:15,568 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:15,569 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:15,569 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-16T12:34:15,569 | ^ 2025-09-16T12:34:15,569 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2025-09-16T12:34:15,569 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-16T12:34:15,569 | ^~~~~~~~~~ 2025-09-16T12:34:15,570 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-16T12:34:15,570 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-16T12:34:15,570 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:15,807 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-16T12:34:15,808 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:15,809 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-16T12:34:15,809 | ^~ ~~~~~~~~~ 2025-09-16T12:34:15,809 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-16T12:34:15,809 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-16T12:34:15,809 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:15,810 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-16T12:34:15,810 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-16T12:34:15,810 | ^~~~~~~~~~~~~~~ 2025-09-16T12:34:15,811 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-16T12:34:15,811 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-16T12:34:15,811 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:15,811 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-16T12:34:15,812 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-16T12:34:15,812 | ^~~~~~~~~~~~~ 2025-09-16T12:34:15,812 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-16T12:34:15,812 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-16T12:34:15,813 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:15,814 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-16T12:34:15,814 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-16T12:34:15,814 | ^~~~~~~~~~~ 2025-09-16T12:34:15,814 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-16T12:34:15,814 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-16T12:34:15,815 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:15,815 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-16T12:34:15,815 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-16T12:34:15,815 | ^~~~~ 2025-09-16T12:34:15,816 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-16T12:34:15,816 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-16T12:34:15,816 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:16,063 command_dist.c: In function ‘combine_queries’: 2025-09-16T12:34:16,064 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-16T12:34:16,064 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-16T12:34:16,065 | ^ 2025-09-16T12:34:16,065 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-16T12:34:16,065 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-16T12:34:16,066 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:16,066 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-16T12:34:16,067 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-16T12:34:16,067 | ^ 2025-09-16T12:34:16,067 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-16T12:34:16,068 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-16T12:34:16,068 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:16,070 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:16,070 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-16T12:34:16,070 | ^~ ~~~~~~~~ 2025-09-16T12:34:16,071 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-16T12:34:16,071 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-16T12:34:16,071 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:16,566 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-39/command_dist_wrapper.o -fopenmp 2025-09-16T12:34:16,732 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_set.c -o build/temp.linux-armv7l-cpython-39/command_set.o -fopenmp 2025-09-16T12:34:16,878 command_set.c: In function ‘sketch_operate’: 2025-09-16T12:34:16,878 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-16T12:34:16,878 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2025-09-16T12:34:16,878 | ^ 2025-09-16T12:34:16,887 command_set.c: In function ‘combin_subset_pans’: 2025-09-16T12:34:16,888 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-16T12:34:16,888 457 | free(co_dstat_fpath); 2025-09-16T12:34:16,888 | ^~~~~~~~~~~~~~ 2025-09-16T12:34:16,889 In file included from kssdheaders/global_basic.h:159, 2025-09-16T12:34:16,889 from command_set.c:15: 2025-09-16T12:34:16,889 /usr/include/stdlib.h:565:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-16T12:34:16,889 565 | extern void free (void *__ptr) __THROW; 2025-09-16T12:34:16,890 | ~~~~~~^~~~~ 2025-09-16T12:34:16,893 command_set.c: In function ‘grouping_genomes’: 2025-09-16T12:34:16,893 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-16T12:34:16,894 562 | free(co_dstat_fpath); 2025-09-16T12:34:16,894 | ^~~~~~~~~~~~~~ 2025-09-16T12:34:16,894 In file included from kssdheaders/global_basic.h:159, 2025-09-16T12:34:16,894 from command_set.c:15: 2025-09-16T12:34:16,895 /usr/include/stdlib.h:565:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-16T12:34:16,895 565 | extern void free (void *__ptr) __THROW; 2025-09-16T12:34:16,895 | ~~~~~~^~~~~ 2025-09-16T12:34:17,009 command_set.c: In function ‘sketch_union’: 2025-09-16T12:34:17,009 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-16T12:34:17,010 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-16T12:34:17,010 | ^ 2025-09-16T12:34:17,010 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-16T12:34:17,010 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-16T12:34:17,011 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,011 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,011 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-16T12:34:17,011 | ^~ ~~~~~~~~~~~ 2025-09-16T12:34:17,012 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-16T12:34:17,012 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-16T12:34:17,012 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,012 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,012 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-16T12:34:17,013 | ^~ ~~~~~~~~~~ 2025-09-16T12:34:17,013 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-16T12:34:17,013 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-16T12:34:17,013 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,123 command_set.c: In function ‘sketch_operate’: 2025-09-16T12:34:17,123 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,123 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-16T12:34:17,124 | ^~ ~~~~~~~~~~ 2025-09-16T12:34:17,124 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-16T12:34:17,124 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-16T12:34:17,124 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,124 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,125 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-16T12:34:17,125 | ^~ ~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,125 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-16T12:34:17,125 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-16T12:34:17,125 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,126 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,126 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-16T12:34:17,126 | ^~ ~~~~~~~~~~~ 2025-09-16T12:34:17,126 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-16T12:34:17,126 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-16T12:34:17,127 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,127 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,127 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-16T12:34:17,127 | ^~ ~~~~~~~~~~~ 2025-09-16T12:34:17,127 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-16T12:34:17,128 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-16T12:34:17,128 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,128 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,128 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-16T12:34:17,128 | ^~ ~~~~~~~~~~~ 2025-09-16T12:34:17,129 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-16T12:34:17,129 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-16T12:34:17,129 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,129 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,130 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-16T12:34:17,130 | ^~ ~~~~~~~~~~~ 2025-09-16T12:34:17,130 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-16T12:34:17,130 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-16T12:34:17,130 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,131 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-16T12:34:17,131 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-16T12:34:17,131 | ^ 2025-09-16T12:34:17,131 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-16T12:34:17,131 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-16T12:34:17,132 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,276 command_set.c: In function ‘uniq_sketch_union’: 2025-09-16T12:34:17,277 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-16T12:34:17,277 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-16T12:34:17,277 | ^ 2025-09-16T12:34:17,277 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-16T12:34:17,277 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-16T12:34:17,278 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,278 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,278 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-16T12:34:17,278 | ^~ ~~~~~~~~~~~ 2025-09-16T12:34:17,278 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-16T12:34:17,279 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-16T12:34:17,279 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,279 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,279 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-16T12:34:17,279 | ^~ ~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,280 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-16T12:34:17,280 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-16T12:34:17,280 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,405 command_set.c: In function ‘combin_pans’: 2025-09-16T12:34:17,406 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,406 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-16T12:34:17,406 | ^~ ~~~~~~~~~~~ 2025-09-16T12:34:17,406 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2025-09-16T12:34:17,406 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-16T12:34:17,407 | ^~~~~~~~~~ 2025-09-16T12:34:17,407 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2025-09-16T12:34:17,407 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-16T12:34:17,407 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,407 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,408 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-16T12:34:17,408 | ^~ ~~~~~~~~~~ 2025-09-16T12:34:17,408 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2025-09-16T12:34:17,408 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-16T12:34:17,408 | ^~~~~~~~~~ 2025-09-16T12:34:17,409 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2025-09-16T12:34:17,409 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-16T12:34:17,409 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,409 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-16T12:34:17,409 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-16T12:34:17,410 | ^ 2025-09-16T12:34:17,410 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-16T12:34:17,410 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-16T12:34:17,410 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,596 command_set.c: In function ‘combin_subset_pans’: 2025-09-16T12:34:17,597 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,597 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-16T12:34:17,597 | ^~ ~~~~~~~~~~~ 2025-09-16T12:34:17,597 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-16T12:34:17,598 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-16T12:34:17,598 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,598 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,598 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-16T12:34:17,598 | ^~ ~~~~~~~~~~ 2025-09-16T12:34:17,599 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-16T12:34:17,599 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-16T12:34:17,599 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,599 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,599 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-16T12:34:17,600 | ^~ ~~~~~~~~~~~ 2025-09-16T12:34:17,600 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-16T12:34:17,600 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-16T12:34:17,600 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,601 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,601 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-16T12:34:17,601 | ^~ ~~~~~~~~~~ 2025-09-16T12:34:17,601 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-16T12:34:17,601 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-16T12:34:17,602 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,602 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-16T12:34:17,602 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-16T12:34:17,602 | ^ 2025-09-16T12:34:17,602 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-16T12:34:17,603 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-16T12:34:17,603 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,803 command_set.c: In function ‘grouping_genomes’: 2025-09-16T12:34:17,804 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,804 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-16T12:34:17,804 | ^~ ~~~~~~~~~~~ 2025-09-16T12:34:17,804 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-16T12:34:17,805 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-16T12:34:17,805 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,805 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,805 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-16T12:34:17,805 | ^~ ~~~~~~~~~~ 2025-09-16T12:34:17,806 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-16T12:34:17,806 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-16T12:34:17,806 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,807 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,807 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-16T12:34:17,808 | ^~ ~~~~~~~~~~~ 2025-09-16T12:34:17,808 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-16T12:34:17,808 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-16T12:34:17,808 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,809 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-16T12:34:17,809 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-16T12:34:17,809 | ^~ ~~~~~~~~~~ 2025-09-16T12:34:17,809 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-16T12:34:17,809 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-16T12:34:17,810 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:17,810 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-16T12:34:17,810 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-16T12:34:17,810 | ^ 2025-09-16T12:34:17,810 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-16T12:34:17,811 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-16T12:34:17,811 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:18,081 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-39/command_shuffle.o -fopenmp 2025-09-16T12:34:18,356 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c global_basic.c -o build/temp.linux-armv7l-cpython-39/global_basic.o -fopenmp 2025-09-16T12:34:18,502 global_basic.c: In function ‘organize_infile_list’: 2025-09-16T12:34:18,502 global_basic.c:195:20: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2025-09-16T12:34:18,502 195 | while (isspace(*buf)) buf++; 2025-09-16T12:34:18,503 | ^~~~~~~ 2025-09-16T12:34:18,503 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-16T12:34:18,503 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-16T12:34:18,503 | ~~^ 2025-09-16T12:34:18,504 | | 2025-09-16T12:34:18,504 | long unsigned int 2025-09-16T12:34:18,504 | %u 2025-09-16T12:34:18,504 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-16T12:34:18,505 | ~~~~~~~~~~~ 2025-09-16T12:34:18,505 | | 2025-09-16T12:34:18,505 | size_t {aka unsigned int} 2025-09-16T12:34:18,505 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-16T12:34:18,505 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-16T12:34:18,506 | ~~^ 2025-09-16T12:34:18,506 | | 2025-09-16T12:34:18,506 | long unsigned int 2025-09-16T12:34:18,506 | %u 2025-09-16T12:34:18,507 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-16T12:34:18,507 | ~~~~~~~~~~~ 2025-09-16T12:34:18,507 | | 2025-09-16T12:34:18,507 | size_t {aka unsigned int} 2025-09-16T12:34:19,179 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c iseq2comem.c -o build/temp.linux-armv7l-cpython-39/iseq2comem.o -fopenmp 2025-09-16T12:34:19,328 iseq2comem.c: In function ‘reads2mco’: 2025-09-16T12:34:19,329 iseq2comem.c:156:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-16T12:34:19,329 156 | if (base > TL) { 2025-09-16T12:34:19,329 | ^ 2025-09-16T12:34:19,330 iseq2comem.c:160:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-16T12:34:19,330 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-16T12:34:19,330 | ^~ 2025-09-16T12:34:19,330 iseq2comem.c:160:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-16T12:34:19,331 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-16T12:34:19,331 | ^ 2025-09-16T12:34:19,331 iseq2comem.c: In function ‘fasta2co’: 2025-09-16T12:34:19,331 iseq2comem.c:239:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-16T12:34:19,331 239 | if (base > TL) { 2025-09-16T12:34:19,332 | ^ 2025-09-16T12:34:19,332 iseq2comem.c:243:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-16T12:34:19,332 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-16T12:34:19,332 | ^~ 2025-09-16T12:34:19,333 iseq2comem.c:243:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-16T12:34:19,333 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-16T12:34:19,333 | ^ 2025-09-16T12:34:19,333 iseq2comem.c: In function ‘fastq2co’: 2025-09-16T12:34:19,334 iseq2comem.c:272:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 2025-09-16T12:34:19,334 272 | if (M >= CT_MAX) fprintf(stderr, "fastq2co(): Occurence num should smaller than %d", (int) CT_MAX); 2025-09-16T12:34:19,334 | ^~ 2025-09-16T12:34:19,334 iseq2comem.c:318:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-16T12:34:19,335 318 | if (base > TL) { 2025-09-16T12:34:19,335 | ^ 2025-09-16T12:34:19,335 iseq2comem.c:322:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-16T12:34:19,335 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-16T12:34:19,335 | ^~ 2025-09-16T12:34:19,336 iseq2comem.c:322:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-16T12:34:19,336 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-16T12:34:19,336 | ^ 2025-09-16T12:34:19,336 iseq2comem.c:341:44: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-16T12:34:19,336 341 | if (!((co[n] & CT_MAX) < M)) co[n] |= CT_MAX; 2025-09-16T12:34:19,337 | ^ 2025-09-16T12:34:19,337 iseq2comem.c: In function ‘fastq2koc’: 2025-09-16T12:34:19,337 iseq2comem.c:402:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-16T12:34:19,337 402 | if (base > TL) { 2025-09-16T12:34:19,338 | ^ 2025-09-16T12:34:19,338 iseq2comem.c:406:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-16T12:34:19,338 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-16T12:34:19,338 | ^~ 2025-09-16T12:34:19,338 iseq2comem.c:406:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-16T12:34:19,339 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-16T12:34:19,339 | ^ 2025-09-16T12:34:19,344 iseq2comem.c: In function ‘mt_shortreads2koc’: 2025-09-16T12:34:19,344 iseq2comem.c:582:34: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-16T12:34:19,344 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-16T12:34:19,344 | ^~ 2025-09-16T12:34:19,345 iseq2comem.c:582:58: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-16T12:34:19,345 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-09-16T12:34:19,345 | ^ 2025-09-16T12:34:20,516 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c mman.c -o build/temp.linux-armv7l-cpython-39/mman.o -fopenmp 2025-09-16T12:34:20,579 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c mytime.c -o build/temp.linux-armv7l-cpython-39/mytime.o -fopenmp 2025-09-16T12:34:20,700 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c pykssd.c -o build/temp.linux-armv7l-cpython-39/pykssd.o -fopenmp 2025-09-16T12:34:21,011 pykssd.c: In function ‘py_dist_dispatch’: 2025-09-16T12:34:21,011 pykssd.c:334:13: warning: unused variable ‘state1’ [-Wunused-variable] 2025-09-16T12:34:21,011 334 | int state1 = dist_dispatch(&dist_opt_val1); 2025-09-16T12:34:21,012 | ^~~~~~ 2025-09-16T12:34:21,013 pykssd.c:396:13: warning: unused variable ‘state2’ [-Wunused-variable] 2025-09-16T12:34:21,013 396 | int state2 = dist_dispatch(&dist_opt_val2); 2025-09-16T12:34:21,013 | ^~~~~~ 2025-09-16T12:34:21,015 pykssd.c:530:13: warning: unused variable ‘state4’ [-Wunused-variable] 2025-09-16T12:34:21,016 530 | int state4 = dist_dispatch(&dist_opt_val4); 2025-09-16T12:34:21,016 | ^~~~~~ 2025-09-16T12:34:21,161 pykssd.c: In function ‘rename_file’: 2025-09-16T12:34:21,161 pykssd.c:44:15: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2025-09-16T12:34:21,162 44 | newfile = strncpy(newfile, p1, len - suffix_len); 2025-09-16T12:34:21,162 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-16T12:34:21,162 pykssd.c:41:15: note: length computed here 2025-09-16T12:34:21,162 41 | int len = strlen(p1); 2025-09-16T12:34:21,162 | ^~~~~~~~~~ 2025-09-16T12:34:21,595 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/co2mco.o build/temp.linux-armv7l-cpython-39/command_composite.o build/temp.linux-armv7l-cpython-39/command_dist.o build/temp.linux-armv7l-cpython-39/command_dist_wrapper.o build/temp.linux-armv7l-cpython-39/command_set.o build/temp.linux-armv7l-cpython-39/command_shuffle.o build/temp.linux-armv7l-cpython-39/global_basic.o build/temp.linux-armv7l-cpython-39/iseq2comem.o build/temp.linux-armv7l-cpython-39/mman.o build/temp.linux-armv7l-cpython-39/mytime.o build/temp.linux-armv7l-cpython-39/pykssd.o -L/usr/lib -lz -o build/lib.linux-armv7l-cpython-39/kssd.cpython-39-arm-linux-gnueabihf.so -fopenmp 2025-09-16T12:34:21,758 building 'nj' extension 2025-09-16T12:34:21,760 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c align.c -o build/temp.linux-armv7l-cpython-39/align.o 2025-09-16T12:34:22,167 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c buildtree.c -o build/temp.linux-armv7l-cpython-39/buildtree.o 2025-09-16T12:34:22,292 buildtree.c: In function ‘UPGMA_buildtree’: 2025-09-16T12:34:22,293 buildtree.c:716:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-16T12:34:22,293 716 | if (min_of_row_idx[m] == minj || min_of_row_idx[m] == mini) { 2025-09-16T12:34:22,293 | ^~ 2025-09-16T12:34:22,293 buildtree.c:716:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-16T12:34:22,294 716 | if (min_of_row_idx[m] == minj || min_of_row_idx[m] == mini) { 2025-09-16T12:34:22,294 | ^~ 2025-09-16T12:34:22,857 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c cluster.c -o build/temp.linux-armv7l-cpython-39/cluster.o 2025-09-16T12:34:23,179 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c distancemat.c -o build/temp.linux-armv7l-cpython-39/distancemat.o 2025-09-16T12:34:23,294 distancemat.c: In function ‘clone_DistanceMatrix’: 2025-09-16T12:34:23,294 distancemat.c:226:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-16T12:34:23,294 226 | for( i=0; i < dest->size; i++) { 2025-09-16T12:34:23,294 | ^ 2025-09-16T12:34:23,295 distancemat.c: In function ‘empty_DistanceMatrix’: 2025-09-16T12:34:23,295 distancemat.c:260:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-16T12:34:23,295 260 | for( i=0; i < mat->size; i++) { 2025-09-16T12:34:23,295 | ^ 2025-09-16T12:34:23,296 distancemat.c: In function ‘print_DistanceMatrix’: 2025-09-16T12:34:23,296 distancemat.c:349:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-16T12:34:23,296 349 | for(row=0; row < mat->size; row++) { 2025-09-16T12:34:23,296 | ^ 2025-09-16T12:34:23,297 distancemat.c: In function ‘read_phylip_DistanceMatrix’: 2025-09-16T12:34:23,297 distancemat.c:410:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2025-09-16T12:34:23,297 410 | while(c = fgetc(handle)) { 2025-09-16T12:34:23,297 | ^ 2025-09-16T12:34:23,672 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c pynj.c -o build/temp.linux-armv7l-cpython-39/pynj.o 2025-09-16T12:34:24,035 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c sequence.c -o build/temp.linux-armv7l-cpython-39/sequence.o 2025-09-16T12:34:24,259 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c tree.c -o build/temp.linux-armv7l-cpython-39/tree.o 2025-09-16T12:34:24,960 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.9 -c util.c -o build/temp.linux-armv7l-cpython-39/util.o 2025-09-16T12:34:25,128 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/align.o build/temp.linux-armv7l-cpython-39/buildtree.o build/temp.linux-armv7l-cpython-39/cluster.o build/temp.linux-armv7l-cpython-39/distancemat.o build/temp.linux-armv7l-cpython-39/pynj.o build/temp.linux-armv7l-cpython-39/sequence.o build/temp.linux-armv7l-cpython-39/tree.o build/temp.linux-armv7l-cpython-39/util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/nj.cpython-39-arm-linux-gnueabihf.so 2025-09-16T12:34:25,240 building 'dnj' extension 2025-09-16T12:34:25,243 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c bytescale.c -o build/temp.linux-armv7l-cpython-39/bytescale.o -fopenmp 2025-09-16T12:34:25,308 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c dnj.c -o build/temp.linux-armv7l-cpython-39/dnj.o -fopenmp 2025-09-16T12:34:25,431 dnj.c: In function ‘minQpair’: 2025-09-16T12:34:25,431 dnj.c:70:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:25,431 70 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:25,432 | ^~~ 2025-09-16T12:34:25,432 dnj.c:126:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:25,433 126 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:25,433 | ^~~ 2025-09-16T12:34:25,433 dnj.c: In function ‘maxQpair’: 2025-09-16T12:34:25,433 dnj.c:157:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:25,433 157 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:25,434 | ^~~ 2025-09-16T12:34:25,434 dnj.c:213:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:25,434 213 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:25,434 | ^~~ 2025-09-16T12:34:25,435 dnj.c: In function ‘UPGMApair’: 2025-09-16T12:34:25,435 dnj.c:237:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:25,435 237 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:25,435 | ^~~ 2025-09-16T12:34:25,435 dnj.c:284:25: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:25,436 284 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:25,436 | ^~~ 2025-09-16T12:34:25,436 dnj.c:291:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:25,436 291 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:25,436 | ^~~ 2025-09-16T12:34:25,437 dnj.c: In function ‘minQrow’: 2025-09-16T12:34:25,437 dnj.c:374:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:25,437 374 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:25,437 | ^~~ 2025-09-16T12:34:25,438 dnj.c: In function ‘maxQrow’: 2025-09-16T12:34:25,438 dnj.c:435:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:25,438 435 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:25,439 | ^~~ 2025-09-16T12:34:25,439 dnj.c: In function ‘UPGMArow’: 2025-09-16T12:34:25,439 dnj.c:488:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:25,439 488 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:25,440 | ^~~ 2025-09-16T12:34:25,440 dnj.c:494:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:25,440 494 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:25,440 | ^~~ 2025-09-16T12:34:25,441 dnj.c: In function ‘minQ_thread’: 2025-09-16T12:34:25,441 dnj.c:553:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:25,441 553 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:25,442 | ^~~ 2025-09-16T12:34:26,609 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c filebuff.c -o build/temp.linux-armv7l-cpython-39/filebuff.o -fopenmp 2025-09-16T12:34:26,711 filebuff.c: In function ‘BuffgzFileBuff’: 2025-09-16T12:34:26,712 filebuff.c:99:47: warning: comparison of integer expressions of different signedness: ‘uInt’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-16T12:34:26,712 99 | if(status == Z_STREAM_END && strm->avail_out == dest->buffSize) { 2025-09-16T12:34:26,712 | ^~ 2025-09-16T12:34:26,994 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c hclust.c -o build/temp.linux-armv7l-cpython-39/hclust.o -fopenmp 2025-09-16T12:34:27,122 hclust.c: In function ‘minQ’: 2025-09-16T12:34:27,123 hclust.c:364:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-16T12:34:27,123 364 | while(++i < Q->n) { 2025-09-16T12:34:27,124 | ^ 2025-09-16T12:34:27,124 hclust.c:377:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:27,124 377 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:27,124 | ^~~ 2025-09-16T12:34:27,125 hclust.c: In function ‘maxQ’: 2025-09-16T12:34:27,125 hclust.c:394:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-16T12:34:27,125 394 | while(++i < Q->n) { 2025-09-16T12:34:27,126 | ^ 2025-09-16T12:34:27,126 hclust.c:407:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:27,126 407 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:27,126 | ^~~ 2025-09-16T12:34:29,177 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c matrix.c -o build/temp.linux-armv7l-cpython-39/matrix.o -fopenmp 2025-09-16T12:34:29,292 matrix.c: In function ‘ltdMatrix_popArrange’: 2025-09-16T12:34:29,292 matrix.c:538:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-16T12:34:29,293 538 | if(pos != n) { 2025-09-16T12:34:29,293 | ^~ 2025-09-16T12:34:30,050 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c mman.c -o build/temp.linux-armv7l-cpython-39/mman.o -fopenmp 2025-09-16T12:34:30,110 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c nj.c -o build/temp.linux-armv7l-cpython-39/nj.o -fopenmp 2025-09-16T12:34:30,226 nj.c: In function ‘initQ’: 2025-09-16T12:34:30,227 nj.c:243:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:30,227 243 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:30,227 | ^~~ 2025-09-16T12:34:30,228 nj.c: In function ‘initQ_MN’: 2025-09-16T12:34:30,229 nj.c:358:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:30,229 358 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:30,229 | ^~~ 2025-09-16T12:34:30,232 nj.c: In function ‘minD’: 2025-09-16T12:34:30,232 nj.c:559:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:30,233 559 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:30,233 | ^~~ 2025-09-16T12:34:30,234 nj.c: In function ‘maxD’: 2025-09-16T12:34:30,234 nj.c:642:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:30,234 642 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:30,235 | ^~~ 2025-09-16T12:34:30,238 nj.c: In function ‘minPair’: 2025-09-16T12:34:30,238 nj.c:826:6: warning: left shift count >= width of type [-Wshift-count-overflow] 2025-09-16T12:34:30,238 826 | pos <<= sizeof(unsigned) * 8; 2025-09-16T12:34:30,238 | ^~~ 2025-09-16T12:34:32,269 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c nwck.c -o build/temp.linux-armv7l-cpython-39/nwck.o -fopenmp 2025-09-16T12:34:32,739 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c pherror.c -o build/temp.linux-armv7l-cpython-39/pherror.o -fopenmp 2025-09-16T12:34:32,822 pherror.c: In function ‘cfread’: 2025-09-16T12:34:32,823 pherror.c:58:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-09-16T12:34:32,823 58 | } else if(nmemb == 0 || (nmemb == -1 && (errno & EAGAIN))) { 2025-09-16T12:34:32,824 | ^~ 2025-09-16T12:34:32,914 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c phy.c -o build/temp.linux-armv7l-cpython-39/phy.o -fopenmp 2025-09-16T12:34:33,837 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c pydnj.c -o build/temp.linux-armv7l-cpython-39/pydnj.o -fopenmp 2025-09-16T12:34:34,128 In file included from pydnj.c:11: 2025-09-16T12:34:34,128 dnjheaders/pherror.h:20: warning: "_XOPEN_SOURCE" redefined 2025-09-16T12:34:34,129 20 | #define _XOPEN_SOURCE 600 2025-09-16T12:34:34,129 | 2025-09-16T12:34:34,129 In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, 2025-09-16T12:34:34,129 from /usr/include/limits.h:26, 2025-09-16T12:34:34,130 from /usr/lib/gcc/arm-linux-gnueabihf/10/include/limits.h:195, 2025-09-16T12:34:34,130 from /usr/lib/gcc/arm-linux-gnueabihf/10/include/syslimits.h:7, 2025-09-16T12:34:34,130 from /usr/lib/gcc/arm-linux-gnueabihf/10/include/limits.h:34, 2025-09-16T12:34:34,130 from /usr/include/python3.9/Python.h:11, 2025-09-16T12:34:34,131 from pydnj.c:1: 2025-09-16T12:34:34,131 /usr/include/features.h:207: note: this is the location of the previous definition 2025-09-16T12:34:34,131 207 | # define _XOPEN_SOURCE 700 2025-09-16T12:34:34,131 | 2025-09-16T12:34:34,143 pydnj.c: In function ‘py_build’: 2025-09-16T12:34:34,144 pydnj.c:165:9: warning: implicit declaration of function ‘omp_get_num_procs’ [-Wimplicit-function-declaration] 2025-09-16T12:34:34,144 165 | p = omp_get_num_procs(); 2025-09-16T12:34:34,145 | ^~~~~~~~~~~~~~~~~ 2025-09-16T12:34:34,332 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c qseqs.c -o build/temp.linux-armv7l-cpython-39/qseqs.o -fopenmp 2025-09-16T12:34:34,522 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c str.c -o build/temp.linux-armv7l-cpython-39/str.o -fopenmp 2025-09-16T12:34:34,630 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c tmp.c -o build/temp.linux-armv7l-cpython-39/tmp.o -fopenmp 2025-09-16T12:34:34,815 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.9 -c vector.c -o build/temp.linux-armv7l-cpython-39/vector.o -fopenmp 2025-09-16T12:34:34,967 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/bytescale.o build/temp.linux-armv7l-cpython-39/dnj.o build/temp.linux-armv7l-cpython-39/filebuff.o build/temp.linux-armv7l-cpython-39/hclust.o build/temp.linux-armv7l-cpython-39/matrix.o build/temp.linux-armv7l-cpython-39/mman.o build/temp.linux-armv7l-cpython-39/nj.o build/temp.linux-armv7l-cpython-39/nwck.o build/temp.linux-armv7l-cpython-39/pherror.o build/temp.linux-armv7l-cpython-39/phy.o build/temp.linux-armv7l-cpython-39/pydnj.o build/temp.linux-armv7l-cpython-39/qseqs.o build/temp.linux-armv7l-cpython-39/str.o build/temp.linux-armv7l-cpython-39/tmp.o build/temp.linux-armv7l-cpython-39/vector.o -L/usr/lib -lz -o build/lib.linux-armv7l-cpython-39/dnj.cpython-39-arm-linux-gnueabihf.so -fopenmp 2025-09-16T12:34:35,144 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-16T12:34:35,145 !! 2025-09-16T12:34:35,145 ******************************************************************************** 2025-09-16T12:34:35,145 Please avoid running ``setup.py`` directly. 2025-09-16T12:34:35,146 Instead, use pypa/build, pypa/installer or other 2025-09-16T12:34:35,146 standards-based tools. 2025-09-16T12:34:35,146 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-16T12:34:35,147 or your builds will no longer be supported. 2025-09-16T12:34:35,147 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-16T12:34:35,147 ******************************************************************************** 2025-09-16T12:34:35,148 !! 2025-09-16T12:34:35,148 self.initialize_options() 2025-09-16T12:34:35,171 installing to build/bdist.linux-armv7l/wheel 2025-09-16T12:34:35,171 running install 2025-09-16T12:34:35,192 running install_lib 2025-09-16T12:34:35,223 creating build/bdist.linux-armv7l/wheel 2025-09-16T12:34:35,224 copying build/lib.linux-armv7l-cpython-39/kssdtree.py -> build/bdist.linux-armv7l/wheel/. 2025-09-16T12:34:35,227 copying build/lib.linux-armv7l-cpython-39/nj.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2025-09-16T12:34:35,231 copying build/lib.linux-armv7l-cpython-39/kssd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2025-09-16T12:34:35,246 copying build/lib.linux-armv7l-cpython-39/toolutils.py -> build/bdist.linux-armv7l/wheel/. 2025-09-16T12:34:35,248 copying build/lib.linux-armv7l-cpython-39/dnj.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2025-09-16T12:34:35,264 running install_egg_info 2025-09-16T12:34:35,298 Copying kssdtree.egg-info to build/bdist.linux-armv7l/wheel/./kssdtree-2.0.7-py3.9.egg-info 2025-09-16T12:34:35,309 running install_scripts 2025-09-16T12:34:35,355 creating build/bdist.linux-armv7l/wheel/kssdtree-2.0.7.dist-info/WHEEL 2025-09-16T12:34:35,358 creating '/tmp/pip-wheel-ezqzxk17/kssdtree-2.0.7-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-16T12:34:35,437 adding 'dnj.cpython-39-arm-linux-gnueabihf.so' 2025-09-16T12:34:35,533 adding 'kssd.cpython-39-arm-linux-gnueabihf.so' 2025-09-16T12:34:35,538 adding 'kssdtree.py' 2025-09-16T12:34:35,560 adding 'nj.cpython-39-arm-linux-gnueabihf.so' 2025-09-16T12:34:35,563 adding 'toolutils.py' 2025-09-16T12:34:35,565 adding 'kssdtree-2.0.7.dist-info/METADATA' 2025-09-16T12:34:35,566 adding 'kssdtree-2.0.7.dist-info/WHEEL' 2025-09-16T12:34:35,567 adding 'kssdtree-2.0.7.dist-info/dependency_links.txt' 2025-09-16T12:34:35,568 adding 'kssdtree-2.0.7.dist-info/top_level.txt' 2025-09-16T12:34:35,569 adding 'kssdtree-2.0.7.dist-info/RECORD' 2025-09-16T12:34:35,574 removing build/bdist.linux-armv7l/wheel 2025-09-16T12:34:35,702 Building wheel for kssdtree (setup.py): finished with status 'done' 2025-09-16T12:34:35,708 Created wheel for kssdtree: filename=kssdtree-2.0.7-cp39-cp39-linux_armv7l.whl size=377804 sha256=27677e716e6d66163d5aa6b6f09a6aaae97d4a8cf4882e9eab54b93800cc3ea8 2025-09-16T12:34:35,708 Stored in directory: /tmp/pip-ephem-wheel-cache-fyu0wzpm/wheels/cc/4e/19/16e959c1a3beea516c7e1d5c36e35cfa4b2f64da85ac4580bb 2025-09-16T12:34:35,716 Successfully built kssdtree 2025-09-16T12:34:35,744 Removed build tracker: '/tmp/pip-req-tracker-amh711yt'