2025-09-16T22:00:30,521 Created temporary directory: /tmp/pip-ephem-wheel-cache-lszo7s0q 2025-09-16T22:00:30,523 Created temporary directory: /tmp/pip-build-tracker-q3nrexw6 2025-09-16T22:00:30,523 Initialized build tracking at /tmp/pip-build-tracker-q3nrexw6 2025-09-16T22:00:30,524 Created build tracker: /tmp/pip-build-tracker-q3nrexw6 2025-09-16T22:00:30,524 Entered build tracker: /tmp/pip-build-tracker-q3nrexw6 2025-09-16T22:00:30,525 Created temporary directory: /tmp/pip-wheel-0cw4051k 2025-09-16T22:00:30,528 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-09-16T22:00:30,530 Created temporary directory: /tmp/pip-ephem-wheel-cache-aa3gjj3g 2025-09-16T22:00:30,551 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-16T22:00:30,555 2 location(s) to search for versions of scipion-em: 2025-09-16T22:00:30,555 * https://pypi.org/simple/scipion-em/ 2025-09-16T22:00:30,555 * https://www.piwheels.org/simple/scipion-em/ 2025-09-16T22:00:30,556 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em/ 2025-09-16T22:00:30,556 Getting page https://pypi.org/simple/scipion-em/ 2025-09-16T22:00:30,558 Found index url https://pypi.org/simple 2025-09-16T22:00:30,777 Fetched page https://pypi.org/simple/scipion-em/ as application/vnd.pypi.simple.v1+json 2025-09-16T22:00:30,796 Found link https://files.pythonhosted.org/packages/71/f7/eca584251d6d615a68a8635e3ee1c43990b9a13002823224332dcbba45ae/scipion-em-3.0.1a1.tar.gz (from 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https://pypi.org/simple/scipion-em/) 2025-09-16T22:00:30,842 Found link https://files.pythonhosted.org/packages/7a/68/dcd48f179cee100bf5b7f4e26e6fedfd0792538b0be9e7a0d1d47a7dbc3f/scipion-em-3.2.2.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.2.2 2025-09-16T22:00:30,842 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/d5/5e/212081b51db19c81dd5bbd4370d9293162d79e3328f5cb0217808229a98b/scipion_em-3.2.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2025-09-16T22:00:30,843 Found link https://files.pythonhosted.org/packages/0e/e6/6babd1c3c30ab6236e9d9d16e7a7be7999090557fb49d359a62d4f52bcbd/scipion-em-3.3.0.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.3.0 2025-09-16T22:00:30,844 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/f7/1d/178b59fda212e5388810bbea1279a5857977ca374dde72a256fffb07f382/scipion_em-3.3.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2025-09-16T22:00:30,844 Found link https://files.pythonhosted.org/packages/1e/44/40c4c3235334aad8cfe02a99805041da806bf499d8c54087d940e4da6a09/scipion-em-3.3.1.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.3.1 2025-09-16T22:00:30,845 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/b1/37/5a49a7bb9a40e1790f04916be45048eeaf9a721f6a4e8c4d28b3e9f66989/scipion_em-3.3.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2025-09-16T22:00:30,846 Found link https://files.pythonhosted.org/packages/32/84/68ab69633c0ac28d43b5be3b1d8113ad9444026b47fd98cb833e9372626c/scipion-em-3.4.0.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.4.0 2025-09-16T22:00:30,847 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/ac/fc/393b01a2609b233fe77cfc27b358e5999eb16c4d6b91d2a7d6b1804296d5/scipion_em-3.4.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2025-09-16T22:00:30,847 Found link https://files.pythonhosted.org/packages/0c/55/88dbe7de08ea9c4b00d843e2a03c0d6dcad4cb6a6f74d4a666ce9ed8e5d9/scipion-em-3.5.0.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.5.0 2025-09-16T22:00:30,848 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/41/79/0d1a2dcff9c1f47d0cccba4d10d7fd707b6c82642ff5dcd25999ff4fa5f8/scipion_em-3.5.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2025-09-16T22:00:30,849 Found link https://files.pythonhosted.org/packages/51/aa/e575e15f75780bbe8cbf79c77ef7033a3a4dd3f723612c59053f7fd9de9a/scipion-em-3.5.1.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.5.1 2025-09-16T22:00:30,849 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/99/9f/b3daae01514eea697883619d583b4c96638b63730a08c1dbbe377a233c0d/scipion_em-3.5.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2025-09-16T22:00:30,850 Found link https://files.pythonhosted.org/packages/fd/8b/e5f9cb09535e1dc44d87abb373d733d0d642eb696c56c248ba4008425dd4/scipion-em-3.6.0.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.6.0 2025-09-16T22:00:30,851 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/a0/fb/e57d5011ab45d740763e36f474a10699f8896184c035d203111f4804bd63/scipion_em-3.6.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2025-09-16T22:00:30,851 Found link https://files.pythonhosted.org/packages/b0/e2/603acc1c4ea45a99d8788ef2b272bfffe54b87398a1a133394f4ec9b1484/scipion-em-3.7.0.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.7.0 2025-09-16T22:00:30,852 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/eb/05/075d6cd0a01c511dd4cc56666555aeda38cb6a3b74fa891fc79cc6fa920a/scipion_em-3.7.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2025-09-16T22:00:30,852 Found link https://files.pythonhosted.org/packages/62/74/34d6c9055b9afb2131e1ebc2513e1cb421e0c3b37ac277180dc5fb1d6149/scipion-em-3.7.1.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.7.1 2025-09-16T22:00:30,853 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/f8/59/ceed8486c5e05eec715e98ca00d5c7adf4c8625ae9d1ba77e2350147a54a/scipion_em-3.7.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2025-09-16T22:00:30,854 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/8b/8f/2a7309cd6189851b8fc9ec01c105f3769a62f8c99478bc763f7a1f333c1c/scipion_em-3.8.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2025-09-16T22:00:30,854 Found link https://files.pythonhosted.org/packages/f3/2c/83d00c158623f1af122a6bec334d4ca9012c7d5042e56188bd00f73fb38d/scipion_em-3.8.0.tar.gz (from https://pypi.org/simple/scipion-em/), 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2025-09-16T22:00:30,858 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/cd/2f/fd630b28690a863439913a93893ed9ed1363c4ec419bcbbf334c3ef2f6b1/scipion_em-3.9.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2025-09-16T22:00:30,858 Found link https://files.pythonhosted.org/packages/5e/a3/6d5050edbe42108295bd28418380a62426a577730b67b609461468606698/scipion_em-3.9.2.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.9.2 2025-09-16T22:00:30,859 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/45/43/809e2080e90755fb2d424a6d4726c3ef1d9a60e1db3dd7c31a8c5ac61c37/scipion_em-3.9.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2025-09-16T22:00:30,860 Found link https://files.pythonhosted.org/packages/3a/35/56d126e787e41439f60815865133fe8a5bfffe8b93859554a4275abec3ea/scipion_em-3.9.3.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.9.3 2025-09-16T22:00:30,860 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/5d/2d/83049d1835043308e83c4a920d14704b01ddba72aa61c07459ecb8872387/scipion_em-3.9.4-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2025-09-16T22:00:30,861 Found link https://files.pythonhosted.org/packages/c3/f1/fa939edbddcbd90303c78491c496312dac19aaaac8526bee262df47aca59/scipion_em-3.9.4.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.9.4 2025-09-16T22:00:30,862 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/1c/5f/4d76d029a0cffc5e6c85c8962220d0700167246952eb6bf857fe9efd6dc8/scipion_em-3.10.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) (requires-python:>=3.8) 2025-09-16T22:00:30,863 Found link https://files.pythonhosted.org/packages/70/5d/2c37b89fa652eadeff75443e6c7b0ff5817ab021c9d77885d79ab605039d/scipion_em-3.10.0.tar.gz (from https://pypi.org/simple/scipion-em/) (requires-python:>=3.8), version: 3.10.0 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https://www.piwheels.org/simple/scipion-em/) (requires-python:>=3.8) 2025-09-16T22:00:31,036 Skipping link: No binaries permitted for scipion-em: https://archive1.piwheels.org/simple/scipion-em/scipion_em-3.0.11-py3-none-any.whl#sha256=6dba7f06dfd480b2d5c0d73c2bd38b030b4dd2ebdd5d1e828e5d5b45ff9ac1a5 (from https://www.piwheels.org/simple/scipion-em/) 2025-09-16T22:00:31,037 Skipping link: No binaries permitted for scipion-em: https://archive1.piwheels.org/simple/scipion-em/scipion_em-3.0.10-py3-none-any.whl#sha256=3d2e12bff2d02efafea39134332ee14ea6a9a8cf8456d92f9dd9e028f26cb0cb (from https://www.piwheels.org/simple/scipion-em/) 2025-09-16T22:00:31,037 Skipping link: No binaries permitted for scipion-em: https://archive1.piwheels.org/simple/scipion-em/scipion_em-3.0.9-py3-none-any.whl#sha256=82d7ef382aab6f2a02e7364b0166d1afbf120f2037a3d931d24b4015b131e51c (from https://www.piwheels.org/simple/scipion-em/) 2025-09-16T22:00:31,038 Skipping link: No binaries permitted for scipion-em: 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https://archive1.piwheels.org/simple/scipion-em/scipion_em-3.0.1-py3-none-any.whl#sha256=e40c5d5be04bc8cb1d42d843875a91b4d0ce022a0d5f308d150ad0838f8efc04 (from https://www.piwheels.org/simple/scipion-em/) 2025-09-16T22:00:31,043 Skipping link: No binaries permitted for scipion-em: https://archive1.piwheels.org/simple/scipion-em/scipion_em-3.0.1b3-py3-none-any.whl#sha256=a24bdcd5ea84f110d892a981194ad78765872e4e0e604dfed64206ab7701db36 (from https://www.piwheels.org/simple/scipion-em/) 2025-09-16T22:00:31,043 Skipping link: No binaries permitted for scipion-em: https://archive1.piwheels.org/simple/scipion-em/scipion_em-3.0.1a1-py3-none-any.whl#sha256=84b1168cd792aed6a3bf1cf2a9ea9e480292d69aa1d8d0e8e99b0b367ed15695 (from https://www.piwheels.org/simple/scipion-em/) 2025-09-16T22:00:31,044 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em/ 2025-09-16T22:00:31,044 Skipping link: not a file: https://pypi.org/simple/scipion-em/ 2025-09-16T22:00:31,069 Given no hashes to check 1 links for project 'scipion-em': discarding no candidates 2025-09-16T22:00:31,088 Collecting scipion-em==3.10.2 2025-09-16T22:00:31,090 Created temporary directory: /tmp/pip-unpack-6kwsz3_5 2025-09-16T22:00:31,318 Downloading scipion_em-3.10.2.tar.gz (1.5 MB) 2025-09-16T22:00:32,112 Added scipion-em==3.10.2 from https://files.pythonhosted.org/packages/ae/80/46216852798c82e533e0aa552f8f209c8462e9e7f394bf278fb4438793cd/scipion_em-3.10.2.tar.gz to build tracker '/tmp/pip-build-tracker-q3nrexw6' 2025-09-16T22:00:32,118 Created temporary directory: /tmp/pip-build-env-clf8psh9 2025-09-16T22:00:32,122 Installing build dependencies: started 2025-09-16T22:00:32,124 Running command pip subprocess to install build dependencies 2025-09-16T22:00:33,244 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-09-16T22:00:33,852 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-09-16T22:00:33,875 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-16T22:00:35,636 Collecting setuptools>=42 2025-09-16T22:00:35,742 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-09-16T22:00:36,013 Collecting wheel 2025-09-16T22:00:36,033 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2025-09-16T22:00:39,032 Installing collected packages: wheel, setuptools 2025-09-16T22:00:39,275 Creating /tmp/pip-build-env-clf8psh9/overlay/local/bin 2025-09-16T22:00:39,277 changing mode of /tmp/pip-build-env-clf8psh9/overlay/local/bin/wheel to 755 2025-09-16T22:00:42,838 Successfully installed setuptools-80.9.0 wheel-0.45.1 2025-09-16T22:00:43,123 Installing build dependencies: finished with status 'done' 2025-09-16T22:00:43,129 Getting requirements to build wheel: started 2025-09-16T22:00:43,130 Running command Getting requirements to build wheel 2025-09-16T22:00:43,733 No `packages` or `py_modules` configuration, performing automatic discovery. 2025-09-16T22:00:43,734 `flat-layout` detected -- analysing . 2025-09-16T22:00:43,761 discovered packages -- ['pwem', 'pwem.templates', 'pwem.objects', 'pwem.tests', 'pwem.cmd', 'pwem.protocols', 'pwem.wizards', 'pwem.convert', 'pwem.emlib', 'pwem.viewers', 'pwem.tests.workflows', 'pwem.tests.protocols', 'pwem.tests.data', 'pwem.protocols.protocol_export', 'pwem.protocols.protocol_import', 'pwem.wizards.wizards_3d', 'pwem.emlib.image', 'pwem.emlib.metadata', 'pwem.viewers.mdviewer'] 2025-09-16T22:00:43,771 /tmp/pip-build-env-clf8psh9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-09-16T22:00:43,772 !! 2025-09-16T22:00:43,773 ******************************************************************************** 2025-09-16T22:00:43,774 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-09-16T22:00:43,775 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-09-16T22:00:43,776 or your builds will no longer be supported. 2025-09-16T22:00:43,777 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-16T22:00:43,778 ******************************************************************************** 2025-09-16T22:00:43,779 !! 2025-09-16T22:00:43,779 corresp(dist, value, root_dir) 2025-09-16T22:00:43,869 running egg_info 2025-09-16T22:00:43,876 writing scipion_em.egg-info/PKG-INFO 2025-09-16T22:00:43,880 writing dependency_links to scipion_em.egg-info/dependency_links.txt 2025-09-16T22:00:43,882 writing entry points to scipion_em.egg-info/entry_points.txt 2025-09-16T22:00:43,887 writing requirements to scipion_em.egg-info/requires.txt 2025-09-16T22:00:43,888 writing top-level names to scipion_em.egg-info/top_level.txt 2025-09-16T22:00:43,934 reading manifest file 'scipion_em.egg-info/SOURCES.txt' 2025-09-16T22:00:43,944 reading manifest template 'MANIFEST.in' 2025-09-16T22:00:43,946 adding license file 'LICENSE' 2025-09-16T22:00:43,955 writing manifest file 'scipion_em.egg-info/SOURCES.txt' 2025-09-16T22:00:44,057 Getting requirements to build wheel: finished with status 'done' 2025-09-16T22:00:44,061 Created temporary directory: /tmp/pip-modern-metadata-hcofxqm_ 2025-09-16T22:00:44,063 Preparing metadata (pyproject.toml): started 2025-09-16T22:00:44,064 Running command Preparing metadata (pyproject.toml) 2025-09-16T22:00:44,613 No `packages` or `py_modules` configuration, performing automatic discovery. 2025-09-16T22:00:44,613 `flat-layout` detected -- analysing . 2025-09-16T22:00:44,635 discovered packages -- ['pwem', 'pwem.templates', 'pwem.objects', 'pwem.tests', 'pwem.cmd', 'pwem.protocols', 'pwem.wizards', 'pwem.convert', 'pwem.emlib', 'pwem.viewers', 'pwem.tests.workflows', 'pwem.tests.protocols', 'pwem.tests.data', 'pwem.protocols.protocol_export', 'pwem.protocols.protocol_import', 'pwem.wizards.wizards_3d', 'pwem.emlib.image', 'pwem.emlib.metadata', 'pwem.viewers.mdviewer'] 2025-09-16T22:00:44,645 /tmp/pip-build-env-clf8psh9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-09-16T22:00:44,646 !! 2025-09-16T22:00:44,647 ******************************************************************************** 2025-09-16T22:00:44,647 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-09-16T22:00:44,648 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-09-16T22:00:44,648 or your builds will no longer be supported. 2025-09-16T22:00:44,649 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-16T22:00:44,650 ******************************************************************************** 2025-09-16T22:00:44,651 !! 2025-09-16T22:00:44,651 corresp(dist, value, root_dir) 2025-09-16T22:00:44,740 running dist_info 2025-09-16T22:00:44,752 creating /tmp/pip-modern-metadata-hcofxqm_/scipion_em.egg-info 2025-09-16T22:00:44,753 writing /tmp/pip-modern-metadata-hcofxqm_/scipion_em.egg-info/PKG-INFO 2025-09-16T22:00:44,756 writing dependency_links to /tmp/pip-modern-metadata-hcofxqm_/scipion_em.egg-info/dependency_links.txt 2025-09-16T22:00:44,758 writing entry points to /tmp/pip-modern-metadata-hcofxqm_/scipion_em.egg-info/entry_points.txt 2025-09-16T22:00:44,763 writing requirements to /tmp/pip-modern-metadata-hcofxqm_/scipion_em.egg-info/requires.txt 2025-09-16T22:00:44,764 writing top-level names to /tmp/pip-modern-metadata-hcofxqm_/scipion_em.egg-info/top_level.txt 2025-09-16T22:00:44,765 writing manifest file '/tmp/pip-modern-metadata-hcofxqm_/scipion_em.egg-info/SOURCES.txt' 2025-09-16T22:00:44,805 reading manifest file '/tmp/pip-modern-metadata-hcofxqm_/scipion_em.egg-info/SOURCES.txt' 2025-09-16T22:00:44,807 reading manifest template 'MANIFEST.in' 2025-09-16T22:00:44,809 adding license file 'LICENSE' 2025-09-16T22:00:44,816 writing manifest file '/tmp/pip-modern-metadata-hcofxqm_/scipion_em.egg-info/SOURCES.txt' 2025-09-16T22:00:44,818 creating '/tmp/pip-modern-metadata-hcofxqm_/scipion_em-3.10.2.dist-info' 2025-09-16T22:00:44,947 Preparing metadata (pyproject.toml): finished with status 'done' 2025-09-16T22:00:44,952 Source in /tmp/pip-wheel-0cw4051k/scipion-em_f29904fe845a404abf009894982d03ad has version 3.10.2, which satisfies requirement scipion-em==3.10.2 from https://files.pythonhosted.org/packages/ae/80/46216852798c82e533e0aa552f8f209c8462e9e7f394bf278fb4438793cd/scipion_em-3.10.2.tar.gz 2025-09-16T22:00:44,953 Removed scipion-em==3.10.2 from https://files.pythonhosted.org/packages/ae/80/46216852798c82e533e0aa552f8f209c8462e9e7f394bf278fb4438793cd/scipion_em-3.10.2.tar.gz from build tracker '/tmp/pip-build-tracker-q3nrexw6' 2025-09-16T22:00:44,959 Created temporary directory: /tmp/pip-unpack-gz7c2jon 2025-09-16T22:00:44,959 Building wheels for collected packages: scipion-em 2025-09-16T22:00:44,964 Created temporary directory: /tmp/pip-wheel-xjig93kw 2025-09-16T22:00:44,965 Destination directory: /tmp/pip-wheel-xjig93kw 2025-09-16T22:00:44,967 Building wheel for scipion-em (pyproject.toml): started 2025-09-16T22:00:44,968 Running command Building wheel for scipion-em (pyproject.toml) 2025-09-16T22:00:45,504 No `packages` or `py_modules` configuration, performing automatic discovery. 2025-09-16T22:00:45,504 `flat-layout` detected -- analysing . 2025-09-16T22:00:45,525 discovered packages -- ['pwem', 'pwem.templates', 'pwem.objects', 'pwem.tests', 'pwem.cmd', 'pwem.protocols', 'pwem.wizards', 'pwem.convert', 'pwem.emlib', 'pwem.viewers', 'pwem.tests.workflows', 'pwem.tests.protocols', 'pwem.tests.data', 'pwem.protocols.protocol_export', 'pwem.protocols.protocol_import', 'pwem.wizards.wizards_3d', 'pwem.emlib.image', 'pwem.emlib.metadata', 'pwem.viewers.mdviewer'] 2025-09-16T22:00:45,535 /tmp/pip-build-env-clf8psh9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-09-16T22:00:45,536 !! 2025-09-16T22:00:45,537 ******************************************************************************** 2025-09-16T22:00:45,537 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-09-16T22:00:45,538 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-09-16T22:00:45,539 or your builds will no longer be supported. 2025-09-16T22:00:45,540 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-16T22:00:45,540 ******************************************************************************** 2025-09-16T22:00:45,541 !! 2025-09-16T22:00:45,542 corresp(dist, value, root_dir) 2025-09-16T22:00:45,623 running bdist_wheel 2025-09-16T22:00:45,645 running build 2025-09-16T22:00:45,645 running build_py 2025-09-16T22:00:45,652 creating build/lib/pwem 2025-09-16T22:00:45,654 copying pwem/constants.py -> build/lib/pwem 2025-09-16T22:00:45,657 copying pwem/bibtex.py -> build/lib/pwem 2025-09-16T22:00:45,659 copying pwem/utils.py -> build/lib/pwem 2025-09-16T22:00:45,661 copying pwem/__init__.py -> build/lib/pwem 2025-09-16T22:00:45,664 creating build/lib/pwem/objects 2025-09-16T22:00:45,665 copying pwem/objects/data.py -> build/lib/pwem/objects 2025-09-16T22:00:45,669 copying pwem/objects/data_tiltpairs.py -> build/lib/pwem/objects 2025-09-16T22:00:45,671 copying pwem/objects/data_flexhub.py -> build/lib/pwem/objects 2025-09-16T22:00:45,674 copying pwem/objects/__init__.py -> build/lib/pwem/objects 2025-09-16T22:00:45,676 creating build/lib/pwem/tests 2025-09-16T22:00:45,677 copying pwem/tests/utils.py -> build/lib/pwem/tests 2025-09-16T22:00:45,679 copying pwem/tests/__init__.py -> build/lib/pwem/tests 2025-09-16T22:00:45,681 creating build/lib/pwem/cmd 2025-09-16T22:00:45,682 copying pwem/cmd/chimera_client.py -> build/lib/pwem/cmd 2025-09-16T22:00:45,684 copying pwem/cmd/convert.py -> build/lib/pwem/cmd 2025-09-16T22:00:45,686 copying pwem/cmd/program.py -> build/lib/pwem/cmd 2025-09-16T22:00:45,689 creating build/lib/pwem/protocols 2025-09-16T22:00:45,690 copying pwem/protocols/protocol_ctf_assign.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,693 copying pwem/protocols/protocol_batch.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,695 copying pwem/protocols/protocol_mathematical_operator.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,698 copying pwem/protocols/protocol_boxsize_checkpoint.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,700 copying pwem/protocols/protocol_pdf_report.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,702 copying pwem/protocols/protocol_tiltpairs.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,704 copying pwem/protocols/protocol_boxsize_parameters.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,707 copying pwem/protocols/protocol_align_movies.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,709 copying pwem/protocols/protocol_projection_edit.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,712 copying pwem/protocols/protocol_origin_sampling_volume.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,714 copying pwem/protocols/protocol_base_flexhub.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,716 copying pwem/protocols/protocol_wait.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,718 copying pwem/protocols/protocol_sets.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,721 copying pwem/protocols/protocol_alignment_invertHand.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,723 copying pwem/protocols/protocol_alignment_assign.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,725 copying pwem/protocols/protocol_particles.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,728 copying pwem/protocols/protocol_create_stream_data.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,730 copying pwem/protocols/protocol_tests.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,733 copying pwem/protocols/protocol_tools.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,735 copying pwem/protocols/protocol_classes_selector.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,737 copying pwem/protocols/protocol_movie_eraser.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,739 copying pwem/protocols/parallel.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,741 copying pwem/protocols/protocol_set_filter.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,743 copying pwem/protocols/protocol_set_editor.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,745 copying pwem/protocols/protocol_3d.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,747 copying pwem/protocols/protocol_extract_coordinates.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,750 copying pwem/protocols/protocol_2d.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,751 copying pwem/protocols/protocol.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,754 copying pwem/protocols/protocol_particles_picking.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,756 copying pwem/protocols/protocol_micrographs.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,759 copying pwem/protocols/protocol_movies.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,762 copying pwem/protocols/__init__.py -> build/lib/pwem/protocols 2025-09-16T22:00:45,764 creating build/lib/pwem/wizards 2025-09-16T22:00:45,765 copying pwem/wizards/wizard.py -> build/lib/pwem/wizards 2025-09-16T22:00:45,768 copying pwem/wizards/wizards.py -> build/lib/pwem/wizards 2025-09-16T22:00:45,771 copying pwem/wizards/__init__.py -> build/lib/pwem/wizards 2025-09-16T22:00:45,773 creating build/lib/pwem/convert 2025-09-16T22:00:45,774 copying pwem/convert/pdb_list.py -> build/lib/pwem/convert 2025-09-16T22:00:45,777 copying pwem/convert/symmetry.py -> build/lib/pwem/convert 2025-09-16T22:00:45,780 copying pwem/convert/sequence.py -> build/lib/pwem/convert 2025-09-16T22:00:45,782 copying pwem/convert/headers.py -> build/lib/pwem/convert 2025-09-16T22:00:45,784 copying pwem/convert/transformations.py -> build/lib/pwem/convert 2025-09-16T22:00:45,788 copying pwem/convert/trigonometry.py -> build/lib/pwem/convert 2025-09-16T22:00:45,790 copying pwem/convert/atom_struct.py -> build/lib/pwem/convert 2025-09-16T22:00:45,793 copying pwem/convert/utils.py -> build/lib/pwem/convert 2025-09-16T22:00:45,795 copying pwem/convert/__init__.py -> build/lib/pwem/convert 2025-09-16T22:00:45,797 creating build/lib/pwem/emlib 2025-09-16T22:00:45,798 copying pwem/emlib/_libNone.py -> build/lib/pwem/emlib 2025-09-16T22:00:45,801 copying pwem/emlib/lib.py -> build/lib/pwem/emlib 2025-09-16T22:00:45,803 copying pwem/emlib/__init__.py -> build/lib/pwem/emlib 2025-09-16T22:00:45,806 creating build/lib/pwem/viewers 2025-09-16T22:00:45,807 copying pwem/viewers/views.py -> build/lib/pwem/viewers 2025-09-16T22:00:45,809 copying pwem/viewers/showj.py -> build/lib/pwem/viewers 2025-09-16T22:00:45,812 copying pwem/viewers/viewer_sequence.py -> build/lib/pwem/viewers 2025-09-16T22:00:45,814 copying pwem/viewers/viewer_coordinates.py -> build/lib/pwem/viewers 2025-09-16T22:00:45,817 copying pwem/viewers/viewer_chimera.py -> build/lib/pwem/viewers 2025-09-16T22:00:45,819 copying pwem/viewers/viewers_data.py -> build/lib/pwem/viewers 2025-09-16T22:00:45,822 copying pwem/viewers/viewers_protocols.py -> build/lib/pwem/viewers 2025-09-16T22:00:45,824 copying pwem/viewers/filehandlers.py -> build/lib/pwem/viewers 2025-09-16T22:00:45,826 copying pwem/viewers/plotter.py -> build/lib/pwem/viewers 2025-09-16T22:00:45,828 copying pwem/viewers/viewer_fsc.py -> build/lib/pwem/viewers 2025-09-16T22:00:45,831 copying pwem/viewers/viewer_angular_dist.py -> build/lib/pwem/viewers 2025-09-16T22:00:45,833 copying pwem/viewers/viewer_vmd.py -> build/lib/pwem/viewers 2025-09-16T22:00:45,834 copying pwem/viewers/viewer_base.py -> build/lib/pwem/viewers 2025-09-16T22:00:45,836 copying pwem/viewers/viewer_pdf.py -> build/lib/pwem/viewers 2025-09-16T22:00:45,838 copying pwem/viewers/viewer_localres.py -> build/lib/pwem/viewers 2025-09-16T22:00:45,841 copying pwem/viewers/viewer_volumes.py -> build/lib/pwem/viewers 2025-09-16T22:00:45,843 copying pwem/viewers/__init__.py -> build/lib/pwem/viewers 2025-09-16T22:00:45,846 creating build/lib/pwem/tests/workflows 2025-09-16T22:00:45,847 copying pwem/tests/workflows/test_workflow_xmipp_assignment_tiltpairs.py -> build/lib/pwem/tests/workflows 2025-09-16T22:00:45,849 copying pwem/tests/workflows/test_workflow_xmipp_ctf_consensus.py -> build/lib/pwem/tests/workflows 2025-09-16T22:00:45,852 copying pwem/tests/workflows/test_workflow_mixed.py -> build/lib/pwem/tests/workflows 2025-09-16T22:00:45,854 copying pwem/tests/workflows/test_workflow_xmipp.py -> build/lib/pwem/tests/workflows 2025-09-16T22:00:45,856 copying pwem/tests/workflows/test_workflow_mixed_large.py -> build/lib/pwem/tests/workflows 2025-09-16T22:00:45,859 copying pwem/tests/workflows/test_workflow_xmipp_rct.py -> build/lib/pwem/tests/workflows 2025-09-16T22:00:45,861 copying pwem/tests/workflows/test_parallel_gpu_queue.py -> build/lib/pwem/tests/workflows 2025-09-16T22:00:45,863 copying pwem/tests/workflows/test_workflow_initialvolume.py -> build/lib/pwem/tests/workflows 2025-09-16T22:00:45,866 copying pwem/tests/workflows/test_workflow.py -> build/lib/pwem/tests/workflows 2025-09-16T22:00:45,868 copying pwem/tests/workflows/test_workflow_modeling.py -> build/lib/pwem/tests/workflows 2025-09-16T22:00:45,871 copying pwem/tests/workflows/__init__.py -> build/lib/pwem/tests/workflows 2025-09-16T22:00:45,874 creating build/lib/pwem/tests/protocols 2025-09-16T22:00:45,875 copying pwem/tests/protocols/test_protocol_wait.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,877 copying pwem/tests/protocols/test_protocols_import_micrographs.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,880 copying pwem/tests/protocols/test_protocols_sets.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,882 copying pwem/tests/protocols/test_protocol_alignment_assign.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,885 copying pwem/tests/protocols/test_extract_particles.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,887 copying pwem/tests/protocols/test_notifier.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,890 copying pwem/tests/protocols/test_protocols_import_movies.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,892 copying pwem/tests/protocols/test_protocol_export2DB.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,894 copying pwem/tests/protocols/test_protocol_volume_homogenizer.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,897 copying pwem/tests/protocols/test_protocol_mathematical_operator.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,899 copying pwem/tests/protocols/test_projection_edit.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,902 copying pwem/tests/protocols/test_protocols_import_masks.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,904 copying pwem/tests/protocols/test_protocols_import_coords.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,906 copying pwem/tests/protocols/test_protocols_import_sequence.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,909 copying pwem/tests/protocols/test_protocols_assign_orig.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,911 copying pwem/tests/protocols/test_protocols_set_filter.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,914 copying pwem/tests/protocols/test_protocol_invert_Hand.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,916 copying pwem/tests/protocols/test_plugin.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,918 copying pwem/tests/protocols/test_protocols_import_volumes.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,920 copying pwem/tests/protocols/test_protocols_import_atomstruct.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,922 copying pwem/tests/protocols/test_protocols_import_ctfs.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,924 copying pwem/tests/protocols/test_protocols_set_editor.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,926 copying pwem/tests/protocols/test_angular_distribution.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,929 copying pwem/tests/protocols/test_protocol_movie_eraser.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,931 copying pwem/tests/protocols/test_protocols_import_particles.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,933 copying pwem/tests/protocols/test_protocol_boxsize_checkpoint.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,935 copying pwem/tests/protocols/__init__.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,936 copying pwem/tests/protocols/test_protocol_extract_coorinates.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,938 copying pwem/tests/protocols/test_protocol_boxsize_parameters.py -> build/lib/pwem/tests/protocols 2025-09-16T22:00:45,941 creating build/lib/pwem/tests/data 2025-09-16T22:00:45,942 copying pwem/tests/data/test_convert_atom_struct.py -> build/lib/pwem/tests/data 2025-09-16T22:00:45,945 copying pwem/tests/data/test_data.py -> build/lib/pwem/tests/data 2025-09-16T22:00:45,948 copying pwem/tests/data/test_symmetry.py -> build/lib/pwem/tests/data 2025-09-16T22:00:45,951 copying pwem/tests/data/test_metadata.py -> build/lib/pwem/tests/data 2025-09-16T22:00:45,953 copying pwem/tests/data/hexonAtomStruct.py -> build/lib/pwem/tests/data 2025-09-16T22:00:46,027 copying pwem/tests/data/__init__.py -> build/lib/pwem/tests/data 2025-09-16T22:00:46,029 creating build/lib/pwem/protocols/protocol_export 2025-09-16T22:00:46,030 copying pwem/protocols/protocol_export/protocol_export_DB.py -> build/lib/pwem/protocols/protocol_export 2025-09-16T22:00:46,032 copying pwem/protocols/protocol_export/__init__.py -> build/lib/pwem/protocols/protocol_export 2025-09-16T22:00:46,035 creating build/lib/pwem/protocols/protocol_import 2025-09-16T22:00:46,036 copying pwem/protocols/protocol_import/ctfs.py -> build/lib/pwem/protocols/protocol_import 2025-09-16T22:00:46,039 copying pwem/protocols/protocol_import/coordinates.py -> build/lib/pwem/protocols/protocol_import 2025-09-16T22:00:46,041 copying pwem/protocols/protocol_import/dataimport.py -> build/lib/pwem/protocols/protocol_import 2025-09-16T22:00:46,043 copying pwem/protocols/protocol_import/sequence.py -> build/lib/pwem/protocols/protocol_import 2025-09-16T22:00:46,046 copying pwem/protocols/protocol_import/micrographs.py -> build/lib/pwem/protocols/protocol_import 2025-09-16T22:00:46,049 copying pwem/protocols/protocol_import/masks.py -> build/lib/pwem/protocols/protocol_import 2025-09-16T22:00:46,051 copying pwem/protocols/protocol_import/images.py -> build/lib/pwem/protocols/protocol_import 2025-09-16T22:00:46,054 copying pwem/protocols/protocol_import/particles.py -> build/lib/pwem/protocols/protocol_import 2025-09-16T22:00:46,056 copying pwem/protocols/protocol_import/volumes.py -> build/lib/pwem/protocols/protocol_import 2025-09-16T22:00:46,059 copying pwem/protocols/protocol_import/base.py -> build/lib/pwem/protocols/protocol_import 2025-09-16T22:00:46,061 copying pwem/protocols/protocol_import/__init__.py -> build/lib/pwem/protocols/protocol_import 2025-09-16T22:00:46,064 creating build/lib/pwem/wizards/wizards_3d 2025-09-16T22:00:46,065 copying pwem/wizards/wizards_3d/mask_volume_wizard.py -> build/lib/pwem/wizards/wizards_3d 2025-09-16T22:00:46,067 copying pwem/wizards/wizards_3d/mask_structure_wizard.py -> build/lib/pwem/wizards/wizards_3d 2025-09-16T22:00:46,070 copying pwem/wizards/wizards_3d/callbacks.py -> build/lib/pwem/wizards/wizards_3d 2025-09-16T22:00:46,072 copying pwem/wizards/wizards_3d/__init__.py -> build/lib/pwem/wizards/wizards_3d 2025-09-16T22:00:46,074 creating build/lib/pwem/emlib/image 2025-09-16T22:00:46,075 copying pwem/emlib/image/image_readers.py -> build/lib/pwem/emlib/image 2025-09-16T22:00:46,078 copying pwem/emlib/image/image_handler.py -> build/lib/pwem/emlib/image 2025-09-16T22:00:46,081 copying pwem/emlib/image/__init__.py -> build/lib/pwem/emlib/image 2025-09-16T22:00:46,083 creating build/lib/pwem/emlib/metadata 2025-09-16T22:00:46,084 copying pwem/emlib/metadata/utils.py -> build/lib/pwem/emlib/metadata 2025-09-16T22:00:46,087 copying pwem/emlib/metadata/__init__.py -> build/lib/pwem/emlib/metadata 2025-09-16T22:00:46,089 creating build/lib/pwem/viewers/mdviewer 2025-09-16T22:00:46,090 copying pwem/viewers/mdviewer/sqlite_dao.py -> build/lib/pwem/viewers/mdviewer 2025-09-16T22:00:46,093 copying pwem/viewers/mdviewer/volumeViewer.py -> build/lib/pwem/viewers/mdviewer 2025-09-16T22:00:46,095 copying pwem/viewers/mdviewer/viewer.py -> build/lib/pwem/viewers/mdviewer 2025-09-16T22:00:46,097 copying pwem/viewers/mdviewer/readers.py -> build/lib/pwem/viewers/mdviewer 2025-09-16T22:00:46,099 copying pwem/viewers/mdviewer/star_dao.py -> build/lib/pwem/viewers/mdviewer 2025-09-16T22:00:46,101 copying pwem/viewers/mdviewer/__init__.py -> build/lib/pwem/viewers/mdviewer 2025-09-16T22:00:46,103 running egg_info 2025-09-16T22:00:46,114 writing scipion_em.egg-info/PKG-INFO 2025-09-16T22:00:46,117 writing dependency_links to scipion_em.egg-info/dependency_links.txt 2025-09-16T22:00:46,119 writing entry points to scipion_em.egg-info/entry_points.txt 2025-09-16T22:00:46,123 writing requirements to scipion_em.egg-info/requires.txt 2025-09-16T22:00:46,124 writing top-level names to scipion_em.egg-info/top_level.txt 2025-09-16T22:00:46,152 reading manifest file 'scipion_em.egg-info/SOURCES.txt' 2025-09-16T22:00:46,162 reading manifest template 'MANIFEST.in' 2025-09-16T22:00:46,164 adding license file 'LICENSE' 2025-09-16T22:00:46,172 writing manifest file 'scipion_em.egg-info/SOURCES.txt' 2025-09-16T22:00:46,185 copying pwem/protocols.conf -> build/lib/pwem 2025-09-16T22:00:46,187 copying pwem/scipion_icon.png -> build/lib/pwem 2025-09-16T22:00:46,190 creating build/lib/pwem/templates 2025-09-16T22:00:46,191 copying pwem/templates/demo.json.template -> build/lib/pwem/templates 2025-09-16T22:00:46,215 installing to build/bdist.linux-armv7l/wheel 2025-09-16T22:00:46,216 running install 2025-09-16T22:00:46,239 running install_lib 2025-09-16T22:00:46,245 creating build/bdist.linux-armv7l/wheel 2025-09-16T22:00:46,248 creating build/bdist.linux-armv7l/wheel/pwem 2025-09-16T22:00:46,249 creating build/bdist.linux-armv7l/wheel/pwem/templates 2025-09-16T22:00:46,250 copying build/lib/pwem/templates/demo.json.template -> build/bdist.linux-armv7l/wheel/./pwem/templates 2025-09-16T22:00:46,253 creating build/bdist.linux-armv7l/wheel/pwem/objects 2025-09-16T22:00:46,254 copying build/lib/pwem/objects/data.py -> build/bdist.linux-armv7l/wheel/./pwem/objects 2025-09-16T22:00:46,259 copying build/lib/pwem/objects/data_tiltpairs.py -> build/bdist.linux-armv7l/wheel/./pwem/objects 2025-09-16T22:00:46,261 copying build/lib/pwem/objects/data_flexhub.py -> build/bdist.linux-armv7l/wheel/./pwem/objects 2025-09-16T22:00:46,263 copying build/lib/pwem/objects/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/objects 2025-09-16T22:00:46,266 creating build/bdist.linux-armv7l/wheel/pwem/tests 2025-09-16T22:00:46,267 creating build/bdist.linux-armv7l/wheel/pwem/tests/workflows 2025-09-16T22:00:46,268 copying build/lib/pwem/tests/workflows/test_workflow_xmipp_assignment_tiltpairs.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2025-09-16T22:00:46,271 copying build/lib/pwem/tests/workflows/test_workflow_xmipp_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2025-09-16T22:00:46,273 copying build/lib/pwem/tests/workflows/test_workflow_mixed.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2025-09-16T22:00:46,275 copying build/lib/pwem/tests/workflows/test_workflow_xmipp.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2025-09-16T22:00:46,278 copying build/lib/pwem/tests/workflows/test_workflow_mixed_large.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2025-09-16T22:00:46,280 copying build/lib/pwem/tests/workflows/test_workflow_xmipp_rct.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2025-09-16T22:00:46,283 copying build/lib/pwem/tests/workflows/test_parallel_gpu_queue.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2025-09-16T22:00:46,285 copying build/lib/pwem/tests/workflows/test_workflow_initialvolume.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2025-09-16T22:00:46,287 copying build/lib/pwem/tests/workflows/test_workflow.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2025-09-16T22:00:46,289 copying build/lib/pwem/tests/workflows/test_workflow_modeling.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2025-09-16T22:00:46,293 copying build/lib/pwem/tests/workflows/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2025-09-16T22:00:46,296 creating build/bdist.linux-armv7l/wheel/pwem/tests/protocols 2025-09-16T22:00:46,297 copying build/lib/pwem/tests/protocols/test_protocol_wait.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,299 copying build/lib/pwem/tests/protocols/test_protocols_import_micrographs.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,302 copying build/lib/pwem/tests/protocols/test_protocols_sets.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,304 copying build/lib/pwem/tests/protocols/test_protocol_alignment_assign.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,307 copying build/lib/pwem/tests/protocols/test_extract_particles.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,309 copying build/lib/pwem/tests/protocols/test_notifier.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,311 copying build/lib/pwem/tests/protocols/test_protocols_import_movies.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,313 copying build/lib/pwem/tests/protocols/test_protocol_export2DB.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,315 copying build/lib/pwem/tests/protocols/test_protocol_volume_homogenizer.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,318 copying build/lib/pwem/tests/protocols/test_protocol_mathematical_operator.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,320 copying build/lib/pwem/tests/protocols/test_projection_edit.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,323 copying build/lib/pwem/tests/protocols/test_protocols_import_masks.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,325 copying build/lib/pwem/tests/protocols/test_protocols_import_coords.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,327 copying build/lib/pwem/tests/protocols/test_protocols_import_sequence.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,330 copying build/lib/pwem/tests/protocols/test_protocols_assign_orig.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,332 copying build/lib/pwem/tests/protocols/test_protocols_set_filter.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,334 copying build/lib/pwem/tests/protocols/test_protocol_invert_Hand.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,337 copying build/lib/pwem/tests/protocols/test_plugin.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,339 copying build/lib/pwem/tests/protocols/test_protocols_import_volumes.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,341 copying build/lib/pwem/tests/protocols/test_protocols_import_atomstruct.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,343 copying build/lib/pwem/tests/protocols/test_protocols_import_ctfs.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,345 copying build/lib/pwem/tests/protocols/test_protocols_set_editor.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,347 copying build/lib/pwem/tests/protocols/test_angular_distribution.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,349 copying build/lib/pwem/tests/protocols/test_protocol_movie_eraser.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,351 copying build/lib/pwem/tests/protocols/test_protocols_import_particles.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,354 copying build/lib/pwem/tests/protocols/test_protocol_boxsize_checkpoint.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,355 copying build/lib/pwem/tests/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,357 copying build/lib/pwem/tests/protocols/test_protocol_extract_coorinates.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,359 copying build/lib/pwem/tests/protocols/test_protocol_boxsize_parameters.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2025-09-16T22:00:46,361 creating build/bdist.linux-armv7l/wheel/pwem/tests/data 2025-09-16T22:00:46,362 copying build/lib/pwem/tests/data/test_convert_atom_struct.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/data 2025-09-16T22:00:46,365 copying build/lib/pwem/tests/data/test_data.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/data 2025-09-16T22:00:46,368 copying build/lib/pwem/tests/data/test_symmetry.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/data 2025-09-16T22:00:46,371 copying build/lib/pwem/tests/data/test_metadata.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/data 2025-09-16T22:00:46,373 copying build/lib/pwem/tests/data/hexonAtomStruct.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/data 2025-09-16T22:00:46,558 copying build/lib/pwem/tests/data/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/data 2025-09-16T22:00:46,559 copying build/lib/pwem/tests/utils.py -> build/bdist.linux-armv7l/wheel/./pwem/tests 2025-09-16T22:00:46,561 copying build/lib/pwem/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/tests 2025-09-16T22:00:46,563 copying build/lib/pwem/scipion_icon.png -> build/bdist.linux-armv7l/wheel/./pwem 2025-09-16T22:00:46,565 copying build/lib/pwem/constants.py -> build/bdist.linux-armv7l/wheel/./pwem 2025-09-16T22:00:46,568 creating build/bdist.linux-armv7l/wheel/pwem/cmd 2025-09-16T22:00:46,569 copying build/lib/pwem/cmd/chimera_client.py -> build/bdist.linux-armv7l/wheel/./pwem/cmd 2025-09-16T22:00:46,571 copying build/lib/pwem/cmd/convert.py -> build/bdist.linux-armv7l/wheel/./pwem/cmd 2025-09-16T22:00:46,573 copying build/lib/pwem/cmd/program.py -> build/bdist.linux-armv7l/wheel/./pwem/cmd 2025-09-16T22:00:46,574 copying build/lib/pwem/bibtex.py -> build/bdist.linux-armv7l/wheel/./pwem 2025-09-16T22:00:46,577 creating build/bdist.linux-armv7l/wheel/pwem/protocols 2025-09-16T22:00:46,578 copying build/lib/pwem/protocols/protocol_ctf_assign.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,581 copying build/lib/pwem/protocols/protocol_batch.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,583 copying build/lib/pwem/protocols/protocol_mathematical_operator.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,586 creating build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_export 2025-09-16T22:00:46,587 copying build/lib/pwem/protocols/protocol_export/protocol_export_DB.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_export 2025-09-16T22:00:46,590 copying build/lib/pwem/protocols/protocol_export/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_export 2025-09-16T22:00:46,592 copying build/lib/pwem/protocols/protocol_boxsize_checkpoint.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,594 copying build/lib/pwem/protocols/protocol_pdf_report.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,596 copying build/lib/pwem/protocols/protocol_tiltpairs.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,599 copying build/lib/pwem/protocols/protocol_boxsize_parameters.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,601 copying build/lib/pwem/protocols/protocol_align_movies.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,604 copying build/lib/pwem/protocols/protocol_projection_edit.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,606 copying build/lib/pwem/protocols/protocol_origin_sampling_volume.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,608 copying build/lib/pwem/protocols/protocol_base_flexhub.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,610 copying build/lib/pwem/protocols/protocol_wait.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,612 copying build/lib/pwem/protocols/protocol_sets.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,615 copying build/lib/pwem/protocols/protocol_alignment_invertHand.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,617 copying build/lib/pwem/protocols/protocol_alignment_assign.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,619 copying build/lib/pwem/protocols/protocol_particles.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,622 copying build/lib/pwem/protocols/protocol_create_stream_data.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,624 copying build/lib/pwem/protocols/protocol_tests.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,627 copying build/lib/pwem/protocols/protocol_tools.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,629 copying build/lib/pwem/protocols/protocol_classes_selector.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,631 copying build/lib/pwem/protocols/protocol_movie_eraser.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,633 copying build/lib/pwem/protocols/parallel.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,635 copying build/lib/pwem/protocols/protocol_set_filter.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,637 copying build/lib/pwem/protocols/protocol_set_editor.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,640 copying build/lib/pwem/protocols/protocol_3d.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,642 copying build/lib/pwem/protocols/protocol_extract_coordinates.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,645 copying build/lib/pwem/protocols/protocol_2d.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,647 copying build/lib/pwem/protocols/protocol.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,649 copying build/lib/pwem/protocols/protocol_particles_picking.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,653 creating build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_import 2025-09-16T22:00:46,654 copying build/lib/pwem/protocols/protocol_import/ctfs.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2025-09-16T22:00:46,656 copying build/lib/pwem/protocols/protocol_import/coordinates.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2025-09-16T22:00:46,659 copying build/lib/pwem/protocols/protocol_import/dataimport.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2025-09-16T22:00:46,661 copying build/lib/pwem/protocols/protocol_import/sequence.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2025-09-16T22:00:46,664 copying build/lib/pwem/protocols/protocol_import/micrographs.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2025-09-16T22:00:46,667 copying build/lib/pwem/protocols/protocol_import/masks.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2025-09-16T22:00:46,669 copying build/lib/pwem/protocols/protocol_import/images.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2025-09-16T22:00:46,671 copying build/lib/pwem/protocols/protocol_import/particles.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2025-09-16T22:00:46,674 copying build/lib/pwem/protocols/protocol_import/volumes.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2025-09-16T22:00:46,677 copying build/lib/pwem/protocols/protocol_import/base.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2025-09-16T22:00:46,680 copying build/lib/pwem/protocols/protocol_import/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2025-09-16T22:00:46,682 copying build/lib/pwem/protocols/protocol_micrographs.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,685 copying build/lib/pwem/protocols/protocol_movies.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,688 copying build/lib/pwem/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2025-09-16T22:00:46,691 creating build/bdist.linux-armv7l/wheel/pwem/wizards 2025-09-16T22:00:46,692 creating build/bdist.linux-armv7l/wheel/pwem/wizards/wizards_3d 2025-09-16T22:00:46,694 copying build/lib/pwem/wizards/wizards_3d/mask_volume_wizard.py -> build/bdist.linux-armv7l/wheel/./pwem/wizards/wizards_3d 2025-09-16T22:00:46,697 copying build/lib/pwem/wizards/wizards_3d/mask_structure_wizard.py -> build/bdist.linux-armv7l/wheel/./pwem/wizards/wizards_3d 2025-09-16T22:00:46,699 copying build/lib/pwem/wizards/wizards_3d/callbacks.py -> build/bdist.linux-armv7l/wheel/./pwem/wizards/wizards_3d 2025-09-16T22:00:46,702 copying build/lib/pwem/wizards/wizards_3d/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/wizards/wizards_3d 2025-09-16T22:00:46,704 copying build/lib/pwem/wizards/wizard.py -> build/bdist.linux-armv7l/wheel/./pwem/wizards 2025-09-16T22:00:46,708 copying build/lib/pwem/wizards/wizards.py -> build/bdist.linux-armv7l/wheel/./pwem/wizards 2025-09-16T22:00:46,711 copying build/lib/pwem/wizards/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/wizards 2025-09-16T22:00:46,713 creating build/bdist.linux-armv7l/wheel/pwem/convert 2025-09-16T22:00:46,715 copying build/lib/pwem/convert/pdb_list.py -> build/bdist.linux-armv7l/wheel/./pwem/convert 2025-09-16T22:00:46,718 copying build/lib/pwem/convert/symmetry.py -> build/bdist.linux-armv7l/wheel/./pwem/convert 2025-09-16T22:00:46,721 copying build/lib/pwem/convert/sequence.py -> build/bdist.linux-armv7l/wheel/./pwem/convert 2025-09-16T22:00:46,723 copying build/lib/pwem/convert/headers.py -> build/bdist.linux-armv7l/wheel/./pwem/convert 2025-09-16T22:00:46,726 copying build/lib/pwem/convert/transformations.py -> build/bdist.linux-armv7l/wheel/./pwem/convert 2025-09-16T22:00:46,729 copying build/lib/pwem/convert/trigonometry.py -> build/bdist.linux-armv7l/wheel/./pwem/convert 2025-09-16T22:00:46,732 copying build/lib/pwem/convert/atom_struct.py -> build/bdist.linux-armv7l/wheel/./pwem/convert 2025-09-16T22:00:46,735 copying build/lib/pwem/convert/utils.py -> build/bdist.linux-armv7l/wheel/./pwem/convert 2025-09-16T22:00:46,737 copying build/lib/pwem/convert/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/convert 2025-09-16T22:00:46,740 creating build/bdist.linux-armv7l/wheel/pwem/emlib 2025-09-16T22:00:46,741 copying build/lib/pwem/emlib/_libNone.py -> build/bdist.linux-armv7l/wheel/./pwem/emlib 2025-09-16T22:00:46,745 creating build/bdist.linux-armv7l/wheel/pwem/emlib/image 2025-09-16T22:00:46,746 copying build/lib/pwem/emlib/image/image_readers.py -> build/bdist.linux-armv7l/wheel/./pwem/emlib/image 2025-09-16T22:00:46,749 copying build/lib/pwem/emlib/image/image_handler.py -> build/bdist.linux-armv7l/wheel/./pwem/emlib/image 2025-09-16T22:00:46,752 copying build/lib/pwem/emlib/image/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/emlib/image 2025-09-16T22:00:46,754 copying build/lib/pwem/emlib/lib.py -> build/bdist.linux-armv7l/wheel/./pwem/emlib 2025-09-16T22:00:46,756 creating build/bdist.linux-armv7l/wheel/pwem/emlib/metadata 2025-09-16T22:00:46,758 copying build/lib/pwem/emlib/metadata/utils.py -> build/bdist.linux-armv7l/wheel/./pwem/emlib/metadata 2025-09-16T22:00:46,760 copying build/lib/pwem/emlib/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/emlib/metadata 2025-09-16T22:00:46,762 copying build/lib/pwem/emlib/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/emlib 2025-09-16T22:00:46,764 copying build/lib/pwem/protocols.conf -> build/bdist.linux-armv7l/wheel/./pwem 2025-09-16T22:00:46,767 copying build/lib/pwem/utils.py -> build/bdist.linux-armv7l/wheel/./pwem 2025-09-16T22:00:46,770 creating build/bdist.linux-armv7l/wheel/pwem/viewers 2025-09-16T22:00:46,771 copying build/lib/pwem/viewers/views.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2025-09-16T22:00:46,775 copying build/lib/pwem/viewers/showj.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2025-09-16T22:00:46,778 copying build/lib/pwem/viewers/viewer_sequence.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2025-09-16T22:00:46,780 copying build/lib/pwem/viewers/viewer_coordinates.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2025-09-16T22:00:46,784 copying build/lib/pwem/viewers/viewer_chimera.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2025-09-16T22:00:46,787 copying build/lib/pwem/viewers/viewers_data.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2025-09-16T22:00:46,790 copying build/lib/pwem/viewers/viewers_protocols.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2025-09-16T22:00:46,792 copying build/lib/pwem/viewers/filehandlers.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2025-09-16T22:00:46,794 copying build/lib/pwem/viewers/plotter.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2025-09-16T22:00:46,797 copying build/lib/pwem/viewers/viewer_fsc.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2025-09-16T22:00:46,799 copying build/lib/pwem/viewers/viewer_angular_dist.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2025-09-16T22:00:46,802 copying build/lib/pwem/viewers/viewer_vmd.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2025-09-16T22:00:46,804 copying build/lib/pwem/viewers/viewer_base.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2025-09-16T22:00:46,806 copying build/lib/pwem/viewers/viewer_pdf.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2025-09-16T22:00:46,808 copying build/lib/pwem/viewers/viewer_localres.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2025-09-16T22:00:46,812 creating build/bdist.linux-armv7l/wheel/pwem/viewers/mdviewer 2025-09-16T22:00:46,814 copying build/lib/pwem/viewers/mdviewer/sqlite_dao.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers/mdviewer 2025-09-16T22:00:46,817 copying build/lib/pwem/viewers/mdviewer/volumeViewer.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers/mdviewer 2025-09-16T22:00:46,820 copying build/lib/pwem/viewers/mdviewer/viewer.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers/mdviewer 2025-09-16T22:00:46,823 copying build/lib/pwem/viewers/mdviewer/readers.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers/mdviewer 2025-09-16T22:00:46,825 copying build/lib/pwem/viewers/mdviewer/star_dao.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers/mdviewer 2025-09-16T22:00:46,828 copying build/lib/pwem/viewers/mdviewer/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers/mdviewer 2025-09-16T22:00:46,830 copying build/lib/pwem/viewers/viewer_volumes.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2025-09-16T22:00:46,832 copying build/lib/pwem/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2025-09-16T22:00:46,835 copying build/lib/pwem/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem 2025-09-16T22:00:46,837 running install_egg_info 2025-09-16T22:00:46,843 Copying scipion_em.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em-3.10.2-py3.11.egg-info 2025-09-16T22:00:46,855 running install_scripts 2025-09-16T22:00:46,869 creating build/bdist.linux-armv7l/wheel/scipion_em-3.10.2.dist-info/WHEEL 2025-09-16T22:00:46,872 creating '/tmp/pip-wheel-xjig93kw/.tmp-oi6629q_/scipion_em-3.10.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-16T22:00:46,875 adding 'pwem/__init__.py' 2025-09-16T22:00:46,877 adding 'pwem/bibtex.py' 2025-09-16T22:00:46,879 adding 'pwem/constants.py' 2025-09-16T22:00:46,881 adding 'pwem/protocols.conf' 2025-09-16T22:00:46,882 adding 'pwem/scipion_icon.png' 2025-09-16T22:00:46,884 adding 'pwem/utils.py' 2025-09-16T22:00:46,886 adding 'pwem/cmd/chimera_client.py' 2025-09-16T22:00:46,887 adding 'pwem/cmd/convert.py' 2025-09-16T22:00:46,889 adding 'pwem/cmd/program.py' 2025-09-16T22:00:46,891 adding 'pwem/convert/__init__.py' 2025-09-16T22:00:46,896 adding 'pwem/convert/atom_struct.py' 2025-09-16T22:00:46,898 adding 'pwem/convert/headers.py' 2025-09-16T22:00:46,901 adding 'pwem/convert/pdb_list.py' 2025-09-16T22:00:46,903 adding 'pwem/convert/sequence.py' 2025-09-16T22:00:46,908 adding 'pwem/convert/symmetry.py' 2025-09-16T22:00:46,916 adding 'pwem/convert/transformations.py' 2025-09-16T22:00:46,918 adding 'pwem/convert/trigonometry.py' 2025-09-16T22:00:46,919 adding 'pwem/convert/utils.py' 2025-09-16T22:00:46,921 adding 'pwem/emlib/__init__.py' 2025-09-16T22:00:46,924 adding 'pwem/emlib/_libNone.py' 2025-09-16T22:00:46,926 adding 'pwem/emlib/lib.py' 2025-09-16T22:00:46,927 adding 'pwem/emlib/image/__init__.py' 2025-09-16T22:00:46,930 adding 'pwem/emlib/image/image_handler.py' 2025-09-16T22:00:46,933 adding 'pwem/emlib/image/image_readers.py' 2025-09-16T22:00:46,935 adding 'pwem/emlib/metadata/__init__.py' 2025-09-16T22:00:46,937 adding 'pwem/emlib/metadata/utils.py' 2025-09-16T22:00:46,939 adding 'pwem/objects/__init__.py' 2025-09-16T22:00:46,950 adding 'pwem/objects/data.py' 2025-09-16T22:00:46,952 adding 'pwem/objects/data_flexhub.py' 2025-09-16T22:00:46,954 adding 'pwem/objects/data_tiltpairs.py' 2025-09-16T22:00:46,956 adding 'pwem/protocols/__init__.py' 2025-09-16T22:00:46,958 adding 'pwem/protocols/parallel.py' 2025-09-16T22:00:46,960 adding 'pwem/protocols/protocol.py' 2025-09-16T22:00:46,961 adding 'pwem/protocols/protocol_2d.py' 2025-09-16T22:00:46,963 adding 'pwem/protocols/protocol_3d.py' 2025-09-16T22:00:46,967 adding 'pwem/protocols/protocol_align_movies.py' 2025-09-16T22:00:46,969 adding 'pwem/protocols/protocol_alignment_assign.py' 2025-09-16T22:00:46,970 adding 'pwem/protocols/protocol_alignment_invertHand.py' 2025-09-16T22:00:46,971 adding 'pwem/protocols/protocol_base_flexhub.py' 2025-09-16T22:00:46,975 adding 'pwem/protocols/protocol_batch.py' 2025-09-16T22:00:46,977 adding 'pwem/protocols/protocol_boxsize_checkpoint.py' 2025-09-16T22:00:46,979 adding 'pwem/protocols/protocol_boxsize_parameters.py' 2025-09-16T22:00:46,980 adding 'pwem/protocols/protocol_classes_selector.py' 2025-09-16T22:00:46,983 adding 'pwem/protocols/protocol_create_stream_data.py' 2025-09-16T22:00:46,985 adding 'pwem/protocols/protocol_ctf_assign.py' 2025-09-16T22:00:46,987 adding 'pwem/protocols/protocol_extract_coordinates.py' 2025-09-16T22:00:46,989 adding 'pwem/protocols/protocol_mathematical_operator.py' 2025-09-16T22:00:46,992 adding 'pwem/protocols/protocol_micrographs.py' 2025-09-16T22:00:46,994 adding 'pwem/protocols/protocol_movie_eraser.py' 2025-09-16T22:00:46,997 adding 'pwem/protocols/protocol_movies.py' 2025-09-16T22:00:46,998 adding 'pwem/protocols/protocol_origin_sampling_volume.py' 2025-09-16T22:00:47,001 adding 'pwem/protocols/protocol_particles.py' 2025-09-16T22:00:47,005 adding 'pwem/protocols/protocol_particles_picking.py' 2025-09-16T22:00:47,006 adding 'pwem/protocols/protocol_pdf_report.py' 2025-09-16T22:00:47,008 adding 'pwem/protocols/protocol_projection_edit.py' 2025-09-16T22:00:47,010 adding 'pwem/protocols/protocol_set_editor.py' 2025-09-16T22:00:47,011 adding 'pwem/protocols/protocol_set_filter.py' 2025-09-16T22:00:47,016 adding 'pwem/protocols/protocol_sets.py' 2025-09-16T22:00:47,018 adding 'pwem/protocols/protocol_tests.py' 2025-09-16T22:00:47,020 adding 'pwem/protocols/protocol_tiltpairs.py' 2025-09-16T22:00:47,021 adding 'pwem/protocols/protocol_tools.py' 2025-09-16T22:00:47,023 adding 'pwem/protocols/protocol_wait.py' 2025-09-16T22:00:47,024 adding 'pwem/protocols/protocol_export/__init__.py' 2025-09-16T22:00:47,026 adding 'pwem/protocols/protocol_export/protocol_export_DB.py' 2025-09-16T22:00:47,028 adding 'pwem/protocols/protocol_import/__init__.py' 2025-09-16T22:00:47,030 adding 'pwem/protocols/protocol_import/base.py' 2025-09-16T22:00:47,033 adding 'pwem/protocols/protocol_import/coordinates.py' 2025-09-16T22:00:47,035 adding 'pwem/protocols/protocol_import/ctfs.py' 2025-09-16T22:00:47,037 adding 'pwem/protocols/protocol_import/dataimport.py' 2025-09-16T22:00:47,040 adding 'pwem/protocols/protocol_import/images.py' 2025-09-16T22:00:47,041 adding 'pwem/protocols/protocol_import/masks.py' 2025-09-16T22:00:47,045 adding 'pwem/protocols/protocol_import/micrographs.py' 2025-09-16T22:00:47,047 adding 'pwem/protocols/protocol_import/particles.py' 2025-09-16T22:00:47,050 adding 'pwem/protocols/protocol_import/sequence.py' 2025-09-16T22:00:47,053 adding 'pwem/protocols/protocol_import/volumes.py' 2025-09-16T22:00:47,055 adding 'pwem/templates/demo.json.template' 2025-09-16T22:00:47,057 adding 'pwem/tests/__init__.py' 2025-09-16T22:00:47,059 adding 'pwem/tests/utils.py' 2025-09-16T22:00:47,060 adding 'pwem/tests/data/__init__.py' 2025-09-16T22:00:47,963 adding 'pwem/tests/data/hexonAtomStruct.py' 2025-09-16T22:00:47,997 adding 'pwem/tests/data/test_convert_atom_struct.py' 2025-09-16T22:00:48,003 adding 'pwem/tests/data/test_data.py' 2025-09-16T22:00:48,005 adding 'pwem/tests/data/test_metadata.py' 2025-09-16T22:00:48,009 adding 'pwem/tests/data/test_symmetry.py' 2025-09-16T22:00:48,012 adding 'pwem/tests/protocols/__init__.py' 2025-09-16T22:00:48,014 adding 'pwem/tests/protocols/test_angular_distribution.py' 2025-09-16T22:00:48,015 adding 'pwem/tests/protocols/test_extract_particles.py' 2025-09-16T22:00:48,017 adding 'pwem/tests/protocols/test_notifier.py' 2025-09-16T22:00:48,019 adding 'pwem/tests/protocols/test_plugin.py' 2025-09-16T22:00:48,023 adding 'pwem/tests/protocols/test_projection_edit.py' 2025-09-16T22:00:48,025 adding 'pwem/tests/protocols/test_protocol_alignment_assign.py' 2025-09-16T22:00:48,027 adding 'pwem/tests/protocols/test_protocol_boxsize_checkpoint.py' 2025-09-16T22:00:48,028 adding 'pwem/tests/protocols/test_protocol_boxsize_parameters.py' 2025-09-16T22:00:48,031 adding 'pwem/tests/protocols/test_protocol_export2DB.py' 2025-09-16T22:00:48,032 adding 'pwem/tests/protocols/test_protocol_extract_coorinates.py' 2025-09-16T22:00:48,034 adding 'pwem/tests/protocols/test_protocol_invert_Hand.py' 2025-09-16T22:00:48,036 adding 'pwem/tests/protocols/test_protocol_mathematical_operator.py' 2025-09-16T22:00:48,037 adding 'pwem/tests/protocols/test_protocol_movie_eraser.py' 2025-09-16T22:00:48,039 adding 'pwem/tests/protocols/test_protocol_volume_homogenizer.py' 2025-09-16T22:00:48,041 adding 'pwem/tests/protocols/test_protocol_wait.py' 2025-09-16T22:00:48,043 adding 'pwem/tests/protocols/test_protocols_assign_orig.py' 2025-09-16T22:00:48,045 adding 'pwem/tests/protocols/test_protocols_import_atomstruct.py' 2025-09-16T22:00:48,047 adding 'pwem/tests/protocols/test_protocols_import_coords.py' 2025-09-16T22:00:48,049 adding 'pwem/tests/protocols/test_protocols_import_ctfs.py' 2025-09-16T22:00:48,051 adding 'pwem/tests/protocols/test_protocols_import_masks.py' 2025-09-16T22:00:48,052 adding 'pwem/tests/protocols/test_protocols_import_micrographs.py' 2025-09-16T22:00:48,054 adding 'pwem/tests/protocols/test_protocols_import_movies.py' 2025-09-16T22:00:48,056 adding 'pwem/tests/protocols/test_protocols_import_particles.py' 2025-09-16T22:00:48,059 adding 'pwem/tests/protocols/test_protocols_import_sequence.py' 2025-09-16T22:00:48,061 adding 'pwem/tests/protocols/test_protocols_import_volumes.py' 2025-09-16T22:00:48,063 adding 'pwem/tests/protocols/test_protocols_set_editor.py' 2025-09-16T22:00:48,065 adding 'pwem/tests/protocols/test_protocols_set_filter.py' 2025-09-16T22:00:48,069 adding 'pwem/tests/protocols/test_protocols_sets.py' 2025-09-16T22:00:48,071 adding 'pwem/tests/workflows/__init__.py' 2025-09-16T22:00:48,073 adding 'pwem/tests/workflows/test_parallel_gpu_queue.py' 2025-09-16T22:00:48,075 adding 'pwem/tests/workflows/test_workflow.py' 2025-09-16T22:00:48,077 adding 'pwem/tests/workflows/test_workflow_initialvolume.py' 2025-09-16T22:00:48,079 adding 'pwem/tests/workflows/test_workflow_mixed.py' 2025-09-16T22:00:48,081 adding 'pwem/tests/workflows/test_workflow_mixed_large.py' 2025-09-16T22:00:48,087 adding 'pwem/tests/workflows/test_workflow_modeling.py' 2025-09-16T22:00:48,090 adding 'pwem/tests/workflows/test_workflow_xmipp.py' 2025-09-16T22:00:48,092 adding 'pwem/tests/workflows/test_workflow_xmipp_assignment_tiltpairs.py' 2025-09-16T22:00:48,094 adding 'pwem/tests/workflows/test_workflow_xmipp_ctf_consensus.py' 2025-09-16T22:00:48,096 adding 'pwem/tests/workflows/test_workflow_xmipp_rct.py' 2025-09-16T22:00:48,098 adding 'pwem/viewers/__init__.py' 2025-09-16T22:00:48,100 adding 'pwem/viewers/filehandlers.py' 2025-09-16T22:00:48,103 adding 'pwem/viewers/plotter.py' 2025-09-16T22:00:48,106 adding 'pwem/viewers/showj.py' 2025-09-16T22:00:48,107 adding 'pwem/viewers/viewer_angular_dist.py' 2025-09-16T22:00:48,109 adding 'pwem/viewers/viewer_base.py' 2025-09-16T22:00:48,112 adding 'pwem/viewers/viewer_chimera.py' 2025-09-16T22:00:48,119 adding 'pwem/viewers/viewer_coordinates.py' 2025-09-16T22:00:48,121 adding 'pwem/viewers/viewer_fsc.py' 2025-09-16T22:00:48,124 adding 'pwem/viewers/viewer_localres.py' 2025-09-16T22:00:48,125 adding 'pwem/viewers/viewer_pdf.py' 2025-09-16T22:00:48,127 adding 'pwem/viewers/viewer_sequence.py' 2025-09-16T22:00:48,129 adding 'pwem/viewers/viewer_vmd.py' 2025-09-16T22:00:48,131 adding 'pwem/viewers/viewer_volumes.py' 2025-09-16T22:00:48,133 adding 'pwem/viewers/viewers_data.py' 2025-09-16T22:00:48,135 adding 'pwem/viewers/viewers_protocols.py' 2025-09-16T22:00:48,137 adding 'pwem/viewers/views.py' 2025-09-16T22:00:48,139 adding 'pwem/viewers/mdviewer/__init__.py' 2025-09-16T22:00:48,141 adding 'pwem/viewers/mdviewer/readers.py' 2025-09-16T22:00:48,145 adding 'pwem/viewers/mdviewer/sqlite_dao.py' 2025-09-16T22:00:48,147 adding 'pwem/viewers/mdviewer/star_dao.py' 2025-09-16T22:00:48,149 adding 'pwem/viewers/mdviewer/viewer.py' 2025-09-16T22:00:48,151 adding 'pwem/viewers/mdviewer/volumeViewer.py' 2025-09-16T22:00:48,153 adding 'pwem/wizards/__init__.py' 2025-09-16T22:00:48,159 adding 'pwem/wizards/wizard.py' 2025-09-16T22:00:48,162 adding 'pwem/wizards/wizards.py' 2025-09-16T22:00:48,164 adding 'pwem/wizards/wizards_3d/__init__.py' 2025-09-16T22:00:48,166 adding 'pwem/wizards/wizards_3d/callbacks.py' 2025-09-16T22:00:48,168 adding 'pwem/wizards/wizards_3d/mask_structure_wizard.py' 2025-09-16T22:00:48,170 adding 'pwem/wizards/wizards_3d/mask_volume_wizard.py' 2025-09-16T22:00:48,178 adding 'scipion_em-3.10.2.dist-info/licenses/LICENSE' 2025-09-16T22:00:48,180 adding 'scipion_em-3.10.2.dist-info/METADATA' 2025-09-16T22:00:48,181 adding 'scipion_em-3.10.2.dist-info/WHEEL' 2025-09-16T22:00:48,182 adding 'scipion_em-3.10.2.dist-info/entry_points.txt' 2025-09-16T22:00:48,183 adding 'scipion_em-3.10.2.dist-info/top_level.txt' 2025-09-16T22:00:48,186 adding 'scipion_em-3.10.2.dist-info/RECORD' 2025-09-16T22:00:48,208 removing build/bdist.linux-armv7l/wheel 2025-09-16T22:00:48,353 Building wheel for scipion-em (pyproject.toml): finished with status 'done' 2025-09-16T22:00:48,395 Created wheel for scipion-em: filename=scipion_em-3.10.2-py3-none-any.whl size=1639338 sha256=8cd54acd60e3996a25cc385b1e241940f41b4c3377f8f5589c1cd65170c925b9 2025-09-16T22:00:48,397 Stored in directory: /tmp/pip-ephem-wheel-cache-aa3gjj3g/wheels/26/20/3c/d4a89d4180fabe13913b9eac19ce44438d826ab28e4abf18de 2025-09-16T22:00:48,413 Successfully built scipion-em 2025-09-16T22:00:48,451 Removed build tracker: '/tmp/pip-build-tracker-q3nrexw6'