2025-09-16T22:17:31,760 Created temporary directory: /tmp/pip-ephem-wheel-cache-q7pt4wrr
2025-09-16T22:17:31,762 Created temporary directory: /tmp/pip-build-tracker-bfc3hob7
2025-09-16T22:17:31,763 Initialized build tracking at /tmp/pip-build-tracker-bfc3hob7
2025-09-16T22:17:31,764 Created build tracker: /tmp/pip-build-tracker-bfc3hob7
2025-09-16T22:17:31,764 Entered build tracker: /tmp/pip-build-tracker-bfc3hob7
2025-09-16T22:17:31,765 Created temporary directory: /tmp/pip-wheel-8z2fyqfb
2025-09-16T22:17:31,768 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-09-16T22:17:31,771 Created temporary directory: /tmp/pip-ephem-wheel-cache-tgfyiqyl
2025-09-16T22:17:31,792 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-16T22:17:31,796 2 location(s) to search for versions of peptide-forest:
2025-09-16T22:17:31,796 * https://pypi.org/simple/peptide-forest/
2025-09-16T22:17:31,796 * https://www.piwheels.org/simple/peptide-forest/
2025-09-16T22:17:31,797 Fetching project page and analyzing links: https://pypi.org/simple/peptide-forest/
2025-09-16T22:17:31,797 Getting page https://pypi.org/simple/peptide-forest/
2025-09-16T22:17:31,799 Found index url https://pypi.org/simple
2025-09-16T22:17:32,009 Fetched page https://pypi.org/simple/peptide-forest/ as application/vnd.pypi.simple.v1+json
2025-09-16T22:17:32,013   Skipping link: No binaries permitted for peptide-forest: https://files.pythonhosted.org/packages/70/b9/39e2fceeeeb848999fd2b24737ec8e9ce9b43629f2554227ff4bfdff1e52/peptide_forest-3.0.0-py3-none-any.whl (from https://pypi.org/simple/peptide-forest/)
2025-09-16T22:17:32,013   Found link https://files.pythonhosted.org/packages/1c/ad/e3714c27c46654abf0ccb50a7bdaa83ac34f5f59c5b276fcd56094bb919a/peptide_forest-3.0.0.tar.gz (from https://pypi.org/simple/peptide-forest/), version: 3.0.0
2025-09-16T22:17:32,014   Skipping link: No binaries permitted for peptide-forest: https://files.pythonhosted.org/packages/55/8a/f34a7db93d04e08dcf164f257ce486a97e94722b2880880aa912f8ec40ef/peptide_forest-3.0.1-py3-none-any.whl (from https://pypi.org/simple/peptide-forest/)
2025-09-16T22:17:32,015   Found link https://files.pythonhosted.org/packages/b0/5c/79cc37b68b8f1ce2d75dc215e763a3b897c60d9ba1c76d5447ceb081cd69/peptide_forest-3.0.1.tar.gz (from https://pypi.org/simple/peptide-forest/), version: 3.0.1
2025-09-16T22:17:32,016   Skipping link: No binaries permitted for peptide-forest: https://files.pythonhosted.org/packages/2d/22/d40791ec74f8da478fe3883c713007496f87ba23ea57050a3775397b6d58/peptide_forest-3.0.2-py3-none-any.whl (from https://pypi.org/simple/peptide-forest/)
2025-09-16T22:17:32,016   Found link https://files.pythonhosted.org/packages/39/30/f1bebe0475b0fcd55de3815ebddd4f9fbcb1fe5d8883374bd9b123108b79/peptide_forest-3.0.2.tar.gz (from https://pypi.org/simple/peptide-forest/), version: 3.0.2
2025-09-16T22:17:32,017   Skipping link: No binaries permitted for peptide-forest: https://files.pythonhosted.org/packages/d3/e9/d8d486825da2e01ad7114b20eb26dc1cc250ef7379bf93eb33a288dae520/peptide_forest-3.0.3-py3-none-any.whl (from https://pypi.org/simple/peptide-forest/)
2025-09-16T22:17:32,018   Found link https://files.pythonhosted.org/packages/86/5e/7fd2a64da483e6b2c743c4767cda7e5e4ccaabe857c8fd2f7723bc680ff3/peptide_forest-3.0.3.tar.gz (from https://pypi.org/simple/peptide-forest/), version: 3.0.3
2025-09-16T22:17:32,018   Skipping link: No binaries permitted for peptide-forest: https://files.pythonhosted.org/packages/94/8a/ec1397eef59ec33adc9d04c6772ae4fd1d0312308166525d6bede1a0d342/peptide_forest-3.1.0-py3-none-any.whl (from https://pypi.org/simple/peptide-forest/)
2025-09-16T22:17:32,019   Found link https://files.pythonhosted.org/packages/aa/7b/aae64a763c649c1b1c4bc93a7b9382798b86eb761869f903418649431bf6/peptide_forest-3.1.0.tar.gz (from https://pypi.org/simple/peptide-forest/), version: 3.1.0
2025-09-16T22:17:32,020   Skipping link: No binaries permitted for peptide-forest: https://files.pythonhosted.org/packages/4c/90/6d1c37c6e7d62cf722e363b03a5cdc5d2ca1cdcf400d761c705a7ad9550c/peptide_forest-3.1.1-py3-none-any.whl (from https://pypi.org/simple/peptide-forest/)
2025-09-16T22:17:32,021   Found link https://files.pythonhosted.org/packages/a7/6a/2ac0cbe8c0ce7457cff5b3ed7a20c322ec05261c14ac3c79a1f638647fe4/peptide_forest-3.1.1.tar.gz (from https://pypi.org/simple/peptide-forest/), version: 3.1.1
2025-09-16T22:17:32,021 Fetching project page and analyzing links: https://www.piwheels.org/simple/peptide-forest/
2025-09-16T22:17:32,022 Getting page https://www.piwheels.org/simple/peptide-forest/
2025-09-16T22:17:32,023 Found index url https://www.piwheels.org/simple
2025-09-16T22:17:32,179 Fetched page https://www.piwheels.org/simple/peptide-forest/ as text/html
2025-09-16T22:17:32,182   Skipping link: No binaries permitted for peptide-forest: https://archive1.piwheels.org/simple/peptide-forest/peptide_forest-3.1.0-py3-none-any.whl#sha256=e78ce49fc5c6cbb0d6013f86fed5d0399344dd702d57dd6c8be7328853aa6471 (from https://www.piwheels.org/simple/peptide-forest/)
2025-09-16T22:17:32,182   Skipping link: No binaries permitted for peptide-forest: https://archive1.piwheels.org/simple/peptide-forest/peptide_forest-3.0.3-py3-none-any.whl#sha256=ae18a8514f3fede235c2dbda0bd7a916ce6384496b9d96254f7e9f246d8e2245 (from https://www.piwheels.org/simple/peptide-forest/)
2025-09-16T22:17:32,183   Skipping link: No binaries permitted for peptide-forest: https://archive1.piwheels.org/simple/peptide-forest/peptide_forest-3.0.2-py3-none-any.whl#sha256=3d56fe7d610ded2cbc61748accbf47b79b9976eefb4f0af7a55c45da6bbebb93 (from https://www.piwheels.org/simple/peptide-forest/)
2025-09-16T22:17:32,183   Skipping link: No binaries permitted for peptide-forest: https://archive1.piwheels.org/simple/peptide-forest/peptide_forest-3.0.1-py3-none-any.whl#sha256=8294f3e4d831289a7b755d0b7cf8ac2c6809d33935df9cb28255529ea7d61520 (from https://www.piwheels.org/simple/peptide-forest/)
2025-09-16T22:17:32,184   Skipping link: No binaries permitted for peptide-forest: https://archive1.piwheels.org/simple/peptide-forest/peptide_forest-3.0.0-py3-none-any.whl#sha256=059100e5aafe115bfed6e468c97bd993f8ef5fb890f5d357e1b6a2554675c918 (from https://www.piwheels.org/simple/peptide-forest/)
2025-09-16T22:17:32,185 Skipping link: not a file: https://www.piwheels.org/simple/peptide-forest/
2025-09-16T22:17:32,185 Skipping link: not a file: https://pypi.org/simple/peptide-forest/
2025-09-16T22:17:32,205 Given no hashes to check 1 links for project 'peptide-forest': discarding no candidates
2025-09-16T22:17:32,222 Collecting peptide-forest==3.1.1
2025-09-16T22:17:32,225   Created temporary directory: /tmp/pip-unpack-fd9dhw39
2025-09-16T22:17:32,434   Downloading peptide_forest-3.1.1.tar.gz (30 kB)
2025-09-16T22:17:32,534   Added peptide-forest==3.1.1 from https://files.pythonhosted.org/packages/a7/6a/2ac0cbe8c0ce7457cff5b3ed7a20c322ec05261c14ac3c79a1f638647fe4/peptide_forest-3.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-bfc3hob7'
2025-09-16T22:17:32,541   Created temporary directory: /tmp/pip-build-env-k3yho137
2025-09-16T22:17:32,546   Installing build dependencies: started
2025-09-16T22:17:32,547   Running command pip subprocess to install build dependencies
2025-09-16T22:17:33,657   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-09-16T22:17:34,221   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-09-16T22:17:34,245   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-09-16T22:17:35,999   Collecting setuptools>=45
2025-09-16T22:17:36,139     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-09-16T22:17:36,406   Collecting wheel
2025-09-16T22:17:36,423     Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB)
2025-09-16T22:17:36,753   Collecting setuptools_scm[toml]>=6.0
2025-09-16T22:17:36,768     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.0-py3-none-any.whl (62 kB)
2025-09-16T22:17:36,965   Collecting packaging>=20
2025-09-16T22:17:36,980     Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB)
2025-09-16T22:17:40,032   Installing collected packages: wheel, setuptools, packaging, setuptools_scm
2025-09-16T22:17:40,274     Creating /tmp/pip-build-env-k3yho137/overlay/local/bin
2025-09-16T22:17:40,276     changing mode of /tmp/pip-build-env-k3yho137/overlay/local/bin/wheel to 755
2025-09-16T22:17:44,274     changing mode of /tmp/pip-build-env-k3yho137/overlay/local/bin/setuptools-scm to 755
2025-09-16T22:17:44,304   Successfully installed packaging-25.0 setuptools-80.9.0 setuptools_scm-9.2.0 wheel-0.45.1
2025-09-16T22:17:44,592   Installing build dependencies: finished with status 'done'
2025-09-16T22:17:44,599   Getting requirements to build wheel: started
2025-09-16T22:17:44,600   Running command Getting requirements to build wheel
2025-09-16T22:17:45,187   /tmp/pip-build-env-k3yho137/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-16T22:17:45,187   !!

2025-09-16T22:17:45,189           ********************************************************************************
2025-09-16T22:17:45,189           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-16T22:17:45,191           License :: OSI Approved :: Apache Software License

2025-09-16T22:17:45,231           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-16T22:17:45,232           ********************************************************************************

2025-09-16T22:17:45,234   !!
2025-09-16T22:17:45,235     self._finalize_license_expression()
2025-09-16T22:17:45,314   Getting requirements to build wheel: finished with status 'done'
2025-09-16T22:17:45,328   Created temporary directory: /tmp/pip-modern-metadata-5q1kf16z
2025-09-16T22:17:45,330   Preparing metadata (pyproject.toml): started
2025-09-16T22:17:45,331   Running command Preparing metadata (pyproject.toml)
2025-09-16T22:17:45,964   /tmp/pip-build-env-k3yho137/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/version_inference.py:51: UserWarning: version of peptide_forest already set
2025-09-16T22:17:45,964     warnings.warn(self.message)
2025-09-16T22:17:45,978   /tmp/pip-build-env-k3yho137/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-16T22:17:45,979   !!

2025-09-16T22:17:45,980           ********************************************************************************
2025-09-16T22:17:45,981           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-16T22:17:45,982           License :: OSI Approved :: Apache Software License

2025-09-16T22:17:45,983           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-16T22:17:45,984           ********************************************************************************

2025-09-16T22:17:45,985   !!
2025-09-16T22:17:45,985     self._finalize_license_expression()
2025-09-16T22:17:46,008   running dist_info
2025-09-16T22:17:46,026   creating /tmp/pip-modern-metadata-5q1kf16z/peptide_forest.egg-info
2025-09-16T22:17:46,027   writing /tmp/pip-modern-metadata-5q1kf16z/peptide_forest.egg-info/PKG-INFO
2025-09-16T22:17:46,034   writing dependency_links to /tmp/pip-modern-metadata-5q1kf16z/peptide_forest.egg-info/dependency_links.txt
2025-09-16T22:17:46,036   writing requirements to /tmp/pip-modern-metadata-5q1kf16z/peptide_forest.egg-info/requires.txt
2025-09-16T22:17:46,037   writing top-level names to /tmp/pip-modern-metadata-5q1kf16z/peptide_forest.egg-info/top_level.txt
2025-09-16T22:17:46,039   writing manifest file '/tmp/pip-modern-metadata-5q1kf16z/peptide_forest.egg-info/SOURCES.txt'
2025-09-16T22:17:46,102   listing git files failed - pretending there aren't any
2025-09-16T22:17:46,106   reading manifest file '/tmp/pip-modern-metadata-5q1kf16z/peptide_forest.egg-info/SOURCES.txt'
2025-09-16T22:17:46,108   adding license file 'LICENSE'
2025-09-16T22:17:46,112   writing manifest file '/tmp/pip-modern-metadata-5q1kf16z/peptide_forest.egg-info/SOURCES.txt'
2025-09-16T22:17:46,113   creating '/tmp/pip-modern-metadata-5q1kf16z/peptide_forest-3.1.1.dist-info'
2025-09-16T22:17:46,247   Preparing metadata (pyproject.toml): finished with status 'done'
2025-09-16T22:17:46,251   Source in /tmp/pip-wheel-8z2fyqfb/peptide-forest_7fcb1197f4e2495799d3f9a1925618e4 has version 3.1.1, which satisfies requirement peptide-forest==3.1.1 from https://files.pythonhosted.org/packages/a7/6a/2ac0cbe8c0ce7457cff5b3ed7a20c322ec05261c14ac3c79a1f638647fe4/peptide_forest-3.1.1.tar.gz
2025-09-16T22:17:46,252   Removed peptide-forest==3.1.1 from https://files.pythonhosted.org/packages/a7/6a/2ac0cbe8c0ce7457cff5b3ed7a20c322ec05261c14ac3c79a1f638647fe4/peptide_forest-3.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-bfc3hob7'
2025-09-16T22:17:46,256 Created temporary directory: /tmp/pip-unpack-_yj923t3
2025-09-16T22:17:46,257 Building wheels for collected packages: peptide-forest
2025-09-16T22:17:46,262   Created temporary directory: /tmp/pip-wheel-b71r4_zf
2025-09-16T22:17:46,262   Destination directory: /tmp/pip-wheel-b71r4_zf
2025-09-16T22:17:46,264   Building wheel for peptide-forest (pyproject.toml): started
2025-09-16T22:17:46,266   Running command Building wheel for peptide-forest (pyproject.toml)
2025-09-16T22:17:46,856   /tmp/pip-build-env-k3yho137/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/version_inference.py:51: UserWarning: version of peptide_forest already set
2025-09-16T22:17:46,856     warnings.warn(self.message)
2025-09-16T22:17:46,870   /tmp/pip-build-env-k3yho137/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-09-16T22:17:46,870   !!

2025-09-16T22:17:46,872           ********************************************************************************
2025-09-16T22:17:46,872           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-09-16T22:17:46,873           License :: OSI Approved :: Apache Software License

2025-09-16T22:17:46,874           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-09-16T22:17:46,875           ********************************************************************************

2025-09-16T22:17:46,876   !!
2025-09-16T22:17:46,877     self._finalize_license_expression()
2025-09-16T22:17:46,907   running bdist_wheel
2025-09-16T22:17:46,944   running build
2025-09-16T22:17:46,945   running build_py
2025-09-16T22:17:46,956   creating build/lib/tests
2025-09-16T22:17:46,958   copying tests/conftest.py -> build/lib/tests
2025-09-16T22:17:46,960   copying tests/test_results.py -> build/lib/tests
2025-09-16T22:17:46,962   copying tests/__init__.py -> build/lib/tests
2025-09-16T22:17:46,964   copying tests/test_regressor_model.py -> build/lib/tests
2025-09-16T22:17:46,966   copying tests/test_training.py -> build/lib/tests
2025-09-16T22:17:46,969   copying tests/test_prep.py -> build/lib/tests
2025-09-16T22:17:46,972   creating build/lib/peptide_forest
2025-09-16T22:17:46,973   copying peptide_forest/__init__.py -> build/lib/peptide_forest
2025-09-16T22:17:46,975   copying peptide_forest/regressor_model.py -> build/lib/peptide_forest
2025-09-16T22:17:46,978   copying peptide_forest/peptide_forest.py -> build/lib/peptide_forest
2025-09-16T22:17:46,980   copying peptide_forest/knowledge_base.py -> build/lib/peptide_forest
2025-09-16T22:17:46,982   copying peptide_forest/results.py -> build/lib/peptide_forest
2025-09-16T22:17:46,984   copying peptide_forest/training.py -> build/lib/peptide_forest
2025-09-16T22:17:46,986   copying peptide_forest/prep.py -> build/lib/peptide_forest
2025-09-16T22:17:46,988   copying peptide_forest/tools.py -> build/lib/peptide_forest
2025-09-16T22:17:46,989   running egg_info
2025-09-16T22:17:47,003   writing peptide_forest.egg-info/PKG-INFO
2025-09-16T22:17:47,010   writing dependency_links to peptide_forest.egg-info/dependency_links.txt
2025-09-16T22:17:47,013   writing requirements to peptide_forest.egg-info/requires.txt
2025-09-16T22:17:47,014   writing top-level names to peptide_forest.egg-info/top_level.txt
2025-09-16T22:17:47,053   listing git files failed - pretending there aren't any
2025-09-16T22:17:47,057   reading manifest file 'peptide_forest.egg-info/SOURCES.txt'
2025-09-16T22:17:47,064   adding license file 'LICENSE'
2025-09-16T22:17:47,067   writing manifest file 'peptide_forest.egg-info/SOURCES.txt'
2025-09-16T22:17:47,070   /tmp/pip-build-env-k3yho137/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'tests._data' is absent from the `packages` configuration.
2025-09-16T22:17:47,071   !!

2025-09-16T22:17:47,072           ********************************************************************************
2025-09-16T22:17:47,073           ############################
2025-09-16T22:17:47,073           # Package would be ignored #
2025-09-16T22:17:47,074           ############################
2025-09-16T22:17:47,074           Python recognizes 'tests._data' as an importable package[^1],
2025-09-16T22:17:47,075           but it is absent from setuptools' `packages` configuration.

2025-09-16T22:17:47,076           This leads to an ambiguous overall configuration. If you want to distribute this
2025-09-16T22:17:47,077           package, please make sure that 'tests._data' is explicitly added
2025-09-16T22:17:47,077           to the `packages` configuration field.

2025-09-16T22:17:47,078           Alternatively, you can also rely on setuptools' discovery methods
2025-09-16T22:17:47,079           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-09-16T22:17:47,079           instead of `find_packages(...)`/`find:`).

2025-09-16T22:17:47,080           You can read more about "package discovery" on setuptools documentation page:

2025-09-16T22:17:47,082           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-09-16T22:17:47,083           If you don't want 'tests._data' to be distributed and are
2025-09-16T22:17:47,083           already explicitly excluding 'tests._data' via
2025-09-16T22:17:47,084           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-09-16T22:17:47,085           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-09-16T22:17:47,085           combination with a more fine grained `package-data` configuration.

2025-09-16T22:17:47,086           You can read more about "package data files" on setuptools documentation page:

2025-09-16T22:17:47,087           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-09-16T22:17:47,089           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-09-16T22:17:47,090                 even if it does not contain any `.py` files.
2025-09-16T22:17:47,090                 On the other hand, currently there is no concept of package data
2025-09-16T22:17:47,091                 directory, all directories are treated like packages.
2025-09-16T22:17:47,091           ********************************************************************************

2025-09-16T22:17:47,092   !!
2025-09-16T22:17:47,093     check.warn(importable)
2025-09-16T22:17:47,093   /tmp/pip-build-env-k3yho137/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'tests._data.quant_data' is absent from the `packages` configuration.
2025-09-16T22:17:47,094   !!

2025-09-16T22:17:47,095           ********************************************************************************
2025-09-16T22:17:47,095           ############################
2025-09-16T22:17:47,096           # Package would be ignored #
2025-09-16T22:17:47,096           ############################
2025-09-16T22:17:47,097           Python recognizes 'tests._data.quant_data' as an importable package[^1],
2025-09-16T22:17:47,097           but it is absent from setuptools' `packages` configuration.

2025-09-16T22:17:47,098           This leads to an ambiguous overall configuration. If you want to distribute this
2025-09-16T22:17:47,099           package, please make sure that 'tests._data.quant_data' is explicitly added
2025-09-16T22:17:47,099           to the `packages` configuration field.

2025-09-16T22:17:47,100           Alternatively, you can also rely on setuptools' discovery methods
2025-09-16T22:17:47,101           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-09-16T22:17:47,101           instead of `find_packages(...)`/`find:`).

2025-09-16T22:17:47,102           You can read more about "package discovery" on setuptools documentation page:

2025-09-16T22:17:47,103           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-09-16T22:17:47,104           If you don't want 'tests._data.quant_data' to be distributed and are
2025-09-16T22:17:47,105           already explicitly excluding 'tests._data.quant_data' via
2025-09-16T22:17:47,105           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-09-16T22:17:47,106           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-09-16T22:17:47,106           combination with a more fine grained `package-data` configuration.

2025-09-16T22:17:47,108           You can read more about "package data files" on setuptools documentation page:

2025-09-16T22:17:47,109           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-09-16T22:17:47,111           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-09-16T22:17:47,111                 even if it does not contain any `.py` files.
2025-09-16T22:17:47,112                 On the other hand, currently there is no concept of package data
2025-09-16T22:17:47,112                 directory, all directories are treated like packages.
2025-09-16T22:17:47,113           ********************************************************************************

2025-09-16T22:17:47,114   !!
2025-09-16T22:17:47,115     check.warn(importable)
2025-09-16T22:17:47,115   /tmp/pip-build-env-k3yho137/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'tests._data.raw_data' is absent from the `packages` configuration.
2025-09-16T22:17:47,116   !!

2025-09-16T22:17:47,117           ********************************************************************************
2025-09-16T22:17:47,117           ############################
2025-09-16T22:17:47,118           # Package would be ignored #
2025-09-16T22:17:47,119           ############################
2025-09-16T22:17:47,119           Python recognizes 'tests._data.raw_data' as an importable package[^1],
2025-09-16T22:17:47,120           but it is absent from setuptools' `packages` configuration.

2025-09-16T22:17:47,121           This leads to an ambiguous overall configuration. If you want to distribute this
2025-09-16T22:17:47,122           package, please make sure that 'tests._data.raw_data' is explicitly added
2025-09-16T22:17:47,122           to the `packages` configuration field.

2025-09-16T22:17:47,123           Alternatively, you can also rely on setuptools' discovery methods
2025-09-16T22:17:47,124           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-09-16T22:17:47,125           instead of `find_packages(...)`/`find:`).

2025-09-16T22:17:47,126           You can read more about "package discovery" on setuptools documentation page:

2025-09-16T22:17:47,127           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-09-16T22:17:47,128           If you don't want 'tests._data.raw_data' to be distributed and are
2025-09-16T22:17:47,128           already explicitly excluding 'tests._data.raw_data' via
2025-09-16T22:17:47,129           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-09-16T22:17:47,129           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-09-16T22:17:47,129           combination with a more fine grained `package-data` configuration.

2025-09-16T22:17:47,130           You can read more about "package data files" on setuptools documentation page:

2025-09-16T22:17:47,131           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-09-16T22:17:47,132           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-09-16T22:17:47,133                 even if it does not contain any `.py` files.
2025-09-16T22:17:47,133                 On the other hand, currently there is no concept of package data
2025-09-16T22:17:47,134                 directory, all directories are treated like packages.
2025-09-16T22:17:47,134           ********************************************************************************

2025-09-16T22:17:47,135   !!
2025-09-16T22:17:47,135     check.warn(importable)
2025-09-16T22:17:47,136   creating build/lib/tests/_data
2025-09-16T22:17:47,136   copying tests/_data/mascot_dat2csv_1_0_0.csv -> build/lib/tests/_data
2025-09-16T22:17:47,137   copying tests/_data/omssa_2_1_9.csv -> build/lib/tests/_data
2025-09-16T22:17:47,137   copying tests/_data/path_dict_medium.json -> build/lib/tests/_data
2025-09-16T22:17:47,138   copying tests/_data/path_dict_medium_with_mapping.json -> build/lib/tests/_data
2025-09-16T22:17:47,138   creating build/lib/tests/_data/quant_data
2025-09-16T22:17:47,139   copying tests/_data/quant_data/quant_data.csv -> build/lib/tests/_data/quant_data
2025-09-16T22:17:47,140   creating build/lib/tests/_data/raw_data
2025-09-16T22:17:47,140   copying tests/_data/raw_data/data_without_mscores.csv -> build/lib/tests/_data/raw_data
2025-09-16T22:17:47,141   copying peptide_forest/version.txt -> build/lib/peptide_forest
2025-09-16T22:17:47,142   installing to build/bdist.linux-armv7l/wheel
2025-09-16T22:17:47,142   running install
2025-09-16T22:17:47,146   running install_lib
2025-09-16T22:17:47,156   creating build/bdist.linux-armv7l/wheel
2025-09-16T22:17:47,159   creating build/bdist.linux-armv7l/wheel/tests
2025-09-16T22:17:47,160   copying build/lib/tests/conftest.py -> build/bdist.linux-armv7l/wheel/./tests
2025-09-16T22:17:47,163   copying build/lib/tests/test_results.py -> build/bdist.linux-armv7l/wheel/./tests
2025-09-16T22:17:47,165   creating build/bdist.linux-armv7l/wheel/tests/_data
2025-09-16T22:17:47,166   copying build/lib/tests/_data/omssa_2_1_9.csv -> build/bdist.linux-armv7l/wheel/./tests/_data
2025-09-16T22:17:47,169   creating build/bdist.linux-armv7l/wheel/tests/_data/raw_data
2025-09-16T22:17:47,170   copying build/lib/tests/_data/raw_data/data_without_mscores.csv -> build/bdist.linux-armv7l/wheel/./tests/_data/raw_data
2025-09-16T22:17:47,172   copying build/lib/tests/_data/mascot_dat2csv_1_0_0.csv -> build/bdist.linux-armv7l/wheel/./tests/_data
2025-09-16T22:17:47,174   creating build/bdist.linux-armv7l/wheel/tests/_data/quant_data
2025-09-16T22:17:47,175   copying build/lib/tests/_data/quant_data/quant_data.csv -> build/bdist.linux-armv7l/wheel/./tests/_data/quant_data
2025-09-16T22:17:47,177   copying build/lib/tests/_data/path_dict_medium_with_mapping.json -> build/bdist.linux-armv7l/wheel/./tests/_data
2025-09-16T22:17:47,179   copying build/lib/tests/_data/path_dict_medium.json -> build/bdist.linux-armv7l/wheel/./tests/_data
2025-09-16T22:17:47,181   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests
2025-09-16T22:17:47,182   copying build/lib/tests/test_regressor_model.py -> build/bdist.linux-armv7l/wheel/./tests
2025-09-16T22:17:47,184   copying build/lib/tests/test_training.py -> build/bdist.linux-armv7l/wheel/./tests
2025-09-16T22:17:47,186   copying build/lib/tests/test_prep.py -> build/bdist.linux-armv7l/wheel/./tests
2025-09-16T22:17:47,188   creating build/bdist.linux-armv7l/wheel/peptide_forest
2025-09-16T22:17:47,189   copying build/lib/peptide_forest/__init__.py -> build/bdist.linux-armv7l/wheel/./peptide_forest
2025-09-16T22:17:47,191   copying build/lib/peptide_forest/regressor_model.py -> build/bdist.linux-armv7l/wheel/./peptide_forest
2025-09-16T22:17:47,193   copying build/lib/peptide_forest/version.txt -> build/bdist.linux-armv7l/wheel/./peptide_forest
2025-09-16T22:17:47,195   copying build/lib/peptide_forest/peptide_forest.py -> build/bdist.linux-armv7l/wheel/./peptide_forest
2025-09-16T22:17:47,197   copying build/lib/peptide_forest/knowledge_base.py -> build/bdist.linux-armv7l/wheel/./peptide_forest
2025-09-16T22:17:47,199   copying build/lib/peptide_forest/results.py -> build/bdist.linux-armv7l/wheel/./peptide_forest
2025-09-16T22:17:47,201   copying build/lib/peptide_forest/training.py -> build/bdist.linux-armv7l/wheel/./peptide_forest
2025-09-16T22:17:47,203   copying build/lib/peptide_forest/prep.py -> build/bdist.linux-armv7l/wheel/./peptide_forest
2025-09-16T22:17:47,206   copying build/lib/peptide_forest/tools.py -> build/bdist.linux-armv7l/wheel/./peptide_forest
2025-09-16T22:17:47,207   running install_egg_info
2025-09-16T22:17:47,217   Copying peptide_forest.egg-info to build/bdist.linux-armv7l/wheel/./peptide_forest-3.1.1-py3.11.egg-info
2025-09-16T22:17:47,227   running install_scripts
2025-09-16T22:17:47,236   creating build/bdist.linux-armv7l/wheel/peptide_forest-3.1.1.dist-info/WHEEL
2025-09-16T22:17:47,239   creating '/tmp/pip-wheel-b71r4_zf/.tmp-y3ijy555/peptide_forest-3.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-09-16T22:17:47,241   adding 'peptide_forest/__init__.py'
2025-09-16T22:17:47,242   adding 'peptide_forest/knowledge_base.py'
2025-09-16T22:17:47,244   adding 'peptide_forest/peptide_forest.py'
2025-09-16T22:17:47,246   adding 'peptide_forest/prep.py'
2025-09-16T22:17:47,248   adding 'peptide_forest/regressor_model.py'
2025-09-16T22:17:47,250   adding 'peptide_forest/results.py'
2025-09-16T22:17:47,251   adding 'peptide_forest/tools.py'
2025-09-16T22:17:47,253   adding 'peptide_forest/training.py'
2025-09-16T22:17:47,255   adding 'peptide_forest/version.txt'
2025-09-16T22:17:47,257   adding 'peptide_forest-3.1.1.dist-info/licenses/LICENSE'
2025-09-16T22:17:47,259   adding 'tests/__init__.py'
2025-09-16T22:17:47,260   adding 'tests/conftest.py'
2025-09-16T22:17:47,261   adding 'tests/test_prep.py'
2025-09-16T22:17:47,263   adding 'tests/test_regressor_model.py'
2025-09-16T22:17:47,264   adding 'tests/test_results.py'
2025-09-16T22:17:47,266   adding 'tests/test_training.py'
2025-09-16T22:17:47,268   adding 'tests/_data/mascot_dat2csv_1_0_0.csv'
2025-09-16T22:17:47,269   adding 'tests/_data/omssa_2_1_9.csv'
2025-09-16T22:17:47,270   adding 'tests/_data/path_dict_medium.json'
2025-09-16T22:17:47,271   adding 'tests/_data/path_dict_medium_with_mapping.json'
2025-09-16T22:17:47,273   adding 'tests/_data/quant_data/quant_data.csv'
2025-09-16T22:17:47,275   adding 'tests/_data/raw_data/data_without_mscores.csv'
2025-09-16T22:17:47,276   adding 'peptide_forest-3.1.1.dist-info/METADATA'
2025-09-16T22:17:47,277   adding 'peptide_forest-3.1.1.dist-info/WHEEL'
2025-09-16T22:17:47,278   adding 'peptide_forest-3.1.1.dist-info/top_level.txt'
2025-09-16T22:17:47,280   adding 'peptide_forest-3.1.1.dist-info/RECORD'
2025-09-16T22:17:47,281   removing build/bdist.linux-armv7l/wheel
2025-09-16T22:17:47,390   Building wheel for peptide-forest (pyproject.toml): finished with status 'done'
2025-09-16T22:17:47,395   Created wheel for peptide-forest: filename=peptide_forest-3.1.1-py3-none-any.whl size=26514 sha256=040149d089d60fcb92f080699ecc96da1b1ccdb058816608013429204faf5150
2025-09-16T22:17:47,396   Stored in directory: /tmp/pip-ephem-wheel-cache-tgfyiqyl/wheels/58/76/1b/7f8ec07a28e6cf36f193c182a9501147a22322304c9584e659
2025-09-16T22:17:47,408 Successfully built peptide-forest
2025-09-16T22:17:47,412 Removed build tracker: '/tmp/pip-build-tracker-bfc3hob7'