2025-09-17T17:46:24,038 Created temporary directory: /tmp/pip-ephem-wheel-cache-n559ddle
2025-09-17T17:46:24,040 Created temporary directory: /tmp/pip-req-tracker-ufm5cpl0
2025-09-17T17:46:24,040 Initialized build tracking at /tmp/pip-req-tracker-ufm5cpl0
2025-09-17T17:46:24,041 Created build tracker: /tmp/pip-req-tracker-ufm5cpl0
2025-09-17T17:46:24,041 Entered build tracker: /tmp/pip-req-tracker-ufm5cpl0
2025-09-17T17:46:24,041 Created temporary directory: /tmp/pip-wheel-mla62gzm
2025-09-17T17:46:24,061 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple, https://www.piwheels.org/simple
2025-09-17T17:46:24,063 2 location(s) to search for versions of unifrac:
2025-09-17T17:46:24,063 * https://pypi.org/simple/unifrac/
2025-09-17T17:46:24,063 * https://www.piwheels.org/simple/unifrac/
2025-09-17T17:46:24,063 Fetching project page and analyzing links: https://pypi.org/simple/unifrac/
2025-09-17T17:46:24,064 Getting page https://pypi.org/simple/unifrac/
2025-09-17T17:46:24,065 Found index url https://pypi.org/simple
2025-09-17T17:46:24,069 Starting new HTTPS connection (1): pypi.org:443
2025-09-17T17:46:24,340 https://pypi.org:443 "GET /simple/unifrac/ HTTP/1.1" 200 786
2025-09-17T17:46:24,408   Found link https://files.pythonhosted.org/packages/be/89/683b0925dadf0c63f015aba45e56d943a738caa70f736233e8654dc4a713/unifrac-0.10.0.tar.gz#sha256=94b4a1b146b35ee7f855ae602cedfab2ca179cc87e397d535fd3e7f64d4d7349 (from https://pypi.org/simple/unifrac/), version: 0.10.0
2025-09-17T17:46:24,408   Found link https://files.pythonhosted.org/packages/c4/fe/bf6d6113ab675272f6eb6e593d6842e4f2c074ee9152b6f4316a621462f7/unifrac-0.20.1.tar.gz#sha256=e851bd56269d16b5d005e20c92af4c566bf98ceebca4901085cdb68df6183afd (from https://pypi.org/simple/unifrac/), version: 0.20.1
2025-09-17T17:46:24,408   Found link https://files.pythonhosted.org/packages/ef/40/fcc8a73f40b27682661cad19dac3fbc0ed4f5cd3593d86939b2eb7309956/unifrac-0.20.3.tar.gz#sha256=ad6cfd76d4379080321cf640a39da30f745168ce7896ab21893de85a2f43dc1d (from https://pypi.org/simple/unifrac/), version: 0.20.3
2025-09-17T17:46:24,409   Found link https://files.pythonhosted.org/packages/6c/bd/f07d42bb11485de31f99fc08665ec6615d9a35d795124082452f38714e17/unifrac-1.3.2.tar.gz#sha256=caa67a0c4b7ea6d04f922d68a0b77c12b8db8bd001ae9b7de6474023462df966 (from https://pypi.org/simple/unifrac/), version: 1.3.2
2025-09-17T17:46:24,409   Found link https://files.pythonhosted.org/packages/44/eb/f8ab4718919f5be3f0a6d6e279dcfb92a7d2c2a2fc8b66e51f54724ff148/unifrac-1.5.tar.gz#sha256=74c276772852d90974df7af649877f7f8217d1c556f077d66d64bcc5d2fcab63 (from https://pypi.org/simple/unifrac/), version: 1.5
2025-09-17T17:46:24,409 Fetching project page and analyzing links: https://www.piwheels.org/simple/unifrac/
2025-09-17T17:46:24,410 Getting page https://www.piwheels.org/simple/unifrac/
2025-09-17T17:46:24,411 Found index url https://www.piwheels.org/simple
2025-09-17T17:46:24,413 Starting new HTTPS connection (1): www.piwheels.org:443
2025-09-17T17:46:24,469 https://www.piwheels.org:443 "GET /simple/unifrac/ HTTP/1.1" 200 107
2025-09-17T17:46:24,500 Given no hashes to check 1 links for project 'unifrac': discarding no candidates
2025-09-17T17:46:24,528 Collecting unifrac==1.3.2
2025-09-17T17:46:24,529   Created temporary directory: /tmp/pip-unpack-l1wycuwf
2025-09-17T17:46:24,533   Starting new HTTPS connection (1): files.pythonhosted.org:443
2025-09-17T17:46:24,567   https://files.pythonhosted.org:443 "GET /packages/6c/bd/f07d42bb11485de31f99fc08665ec6615d9a35d795124082452f38714e17/unifrac-1.3.2.tar.gz HTTP/1.1" 200 259141
2025-09-17T17:46:24,568   Downloading unifrac-1.3.2.tar.gz (259 kB)
2025-09-17T17:46:24,731   Added unifrac==1.3.2 from https://files.pythonhosted.org/packages/6c/bd/f07d42bb11485de31f99fc08665ec6615d9a35d795124082452f38714e17/unifrac-1.3.2.tar.gz#sha256=caa67a0c4b7ea6d04f922d68a0b77c12b8db8bd001ae9b7de6474023462df966 to build tracker '/tmp/pip-req-tracker-ufm5cpl0'
2025-09-17T17:46:24,732     Running setup.py (path:/tmp/pip-wheel-mla62gzm/unifrac_d19f25feb84847c79d72f5e0f2e0301a/setup.py) egg_info for package unifrac
2025-09-17T17:46:24,733     Created temporary directory: /tmp/pip-pip-egg-info-s5ukpy51
2025-09-17T17:46:24,733     Running command python setup.py egg_info
2025-09-17T17:46:35,349     Compiling unifrac/_api.pyx because it changed.
2025-09-17T17:46:35,350     [1/1] Cythonizing unifrac/_api.pyx
2025-09-17T17:46:35,564     running egg_info
2025-09-17T17:46:35,591     creating /tmp/pip-pip-egg-info-s5ukpy51/unifrac.egg-info
2025-09-17T17:46:35,592     writing /tmp/pip-pip-egg-info-s5ukpy51/unifrac.egg-info/PKG-INFO
2025-09-17T17:46:35,601     writing dependency_links to /tmp/pip-pip-egg-info-s5ukpy51/unifrac.egg-info/dependency_links.txt
2025-09-17T17:46:35,607     writing requirements to /tmp/pip-pip-egg-info-s5ukpy51/unifrac.egg-info/requires.txt
2025-09-17T17:46:35,608     writing top-level names to /tmp/pip-pip-egg-info-s5ukpy51/unifrac.egg-info/top_level.txt
2025-09-17T17:46:35,609     writing manifest file '/tmp/pip-pip-egg-info-s5ukpy51/unifrac.egg-info/SOURCES.txt'
2025-09-17T17:46:35,675     dependency /usr/local/lib/python3.9/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-09-17T17:46:35,675     dependency /usr/local/lib/python3.9/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-09-17T17:46:35,675     dependency /usr/local/lib/python3.9/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-09-17T17:46:35,676     dependency /usr/local/lib/python3.9/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-09-17T17:46:35,677     dependency /usr/local/lib/python3.9/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-09-17T17:46:35,733     reading manifest file '/tmp/pip-pip-egg-info-s5ukpy51/unifrac.egg-info/SOURCES.txt'
2025-09-17T17:46:35,734     reading manifest template 'MANIFEST.in'
2025-09-17T17:46:35,737     warning: no previously-included files matching '*.pyc' found anywhere in distribution
2025-09-17T17:46:35,738     warning: no previously-included files matching '*.pyo' found anywhere in distribution
2025-09-17T17:46:35,739     warning: no previously-included files matching '.git' found anywhere in distribution
2025-09-17T17:46:35,739     warning: no previously-included files matching '*.so' found anywhere in distribution
2025-09-17T17:46:35,740     warning: no previously-included files matching '.*.swp' found anywhere in distribution
2025-09-17T17:46:35,741     adding license file 'LICENSE'
2025-09-17T17:46:35,744     writing manifest file '/tmp/pip-pip-egg-info-s5ukpy51/unifrac.egg-info/SOURCES.txt'
2025-09-17T17:46:36,344   Source in /tmp/pip-wheel-mla62gzm/unifrac_d19f25feb84847c79d72f5e0f2e0301a has version 1.3.2, which satisfies requirement unifrac==1.3.2 from https://files.pythonhosted.org/packages/6c/bd/f07d42bb11485de31f99fc08665ec6615d9a35d795124082452f38714e17/unifrac-1.3.2.tar.gz#sha256=caa67a0c4b7ea6d04f922d68a0b77c12b8db8bd001ae9b7de6474023462df966
2025-09-17T17:46:36,345   Removed unifrac==1.3.2 from https://files.pythonhosted.org/packages/6c/bd/f07d42bb11485de31f99fc08665ec6615d9a35d795124082452f38714e17/unifrac-1.3.2.tar.gz#sha256=caa67a0c4b7ea6d04f922d68a0b77c12b8db8bd001ae9b7de6474023462df966 from build tracker '/tmp/pip-req-tracker-ufm5cpl0'
2025-09-17T17:46:36,351 Created temporary directory: /tmp/pip-unpack-0aeu5_ky
2025-09-17T17:46:36,351 Building wheels for collected packages: unifrac
2025-09-17T17:46:36,355   Created temporary directory: /tmp/pip-wheel-juv9f5t8
2025-09-17T17:46:36,356   Building wheel for unifrac (setup.py): started
2025-09-17T17:46:36,356   Destination directory: /tmp/pip-wheel-juv9f5t8
2025-09-17T17:46:36,357   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-mla62gzm/unifrac_d19f25feb84847c79d72f5e0f2e0301a/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-mla62gzm/unifrac_d19f25feb84847c79d72f5e0f2e0301a/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-juv9f5t8
2025-09-17T17:46:38,051   running bdist_wheel
2025-09-17T17:46:38,156   running build
2025-09-17T17:46:38,156   running build_py
2025-09-17T17:46:38,186   creating build/lib.linux-armv7l-cpython-39/unifrac
2025-09-17T17:46:38,188   copying unifrac/_methods.py -> build/lib.linux-armv7l-cpython-39/unifrac
2025-09-17T17:46:38,192   copying unifrac/_meta.py -> build/lib.linux-armv7l-cpython-39/unifrac
2025-09-17T17:46:38,194   copying unifrac/__init__.py -> build/lib.linux-armv7l-cpython-39/unifrac
2025-09-17T17:46:38,197   creating build/lib.linux-armv7l-cpython-39/unifrac/tests
2025-09-17T17:46:38,198   copying unifrac/tests/test_methods.py -> build/lib.linux-armv7l-cpython-39/unifrac/tests
2025-09-17T17:46:38,200   copying unifrac/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/unifrac/tests
2025-09-17T17:46:38,202   copying unifrac/tests/test_api.py -> build/lib.linux-armv7l-cpython-39/unifrac/tests
2025-09-17T17:46:38,207   creating build/lib.linux-armv7l-cpython-39/unifrac/tests/data
2025-09-17T17:46:38,208   copying unifrac/tests/data/e1.biom -> build/lib.linux-armv7l-cpython-39/unifrac/tests/data
2025-09-17T17:46:38,212   copying unifrac/tests/data/e2.biom -> build/lib.linux-armv7l-cpython-39/unifrac/tests/data
2025-09-17T17:46:38,215   copying unifrac/tests/data/t2.newick -> build/lib.linux-armv7l-cpython-39/unifrac/tests/data
2025-09-17T17:46:38,217   copying unifrac/tests/data/crawford.group.tsv -> build/lib.linux-armv7l-cpython-39/unifrac/tests/data
2025-09-17T17:46:38,219   copying unifrac/tests/data/crawford.tre -> build/lib.linux-armv7l-cpython-39/unifrac/tests/data
2025-09-17T17:46:38,222   copying unifrac/tests/data/crawford.biom -> build/lib.linux-armv7l-cpython-39/unifrac/tests/data
2025-09-17T17:46:38,228   copying unifrac/tests/data/test.faith.exp -> build/lib.linux-armv7l-cpython-39/unifrac/tests/data
2025-09-17T17:46:38,230   copying unifrac/tests/data/t1.newick -> build/lib.linux-armv7l-cpython-39/unifrac/tests/data
2025-09-17T17:46:38,233   running build_ext
2025-09-17T17:46:38,233   Compiling SSU
2025-09-17T17:46:38,249   Traceback (most recent call last):
2025-09-17T17:46:38,250     File "<string>", line 1, in <module>
2025-09-17T17:46:38,251     File "/tmp/pip-wheel-mla62gzm/unifrac_d19f25feb84847c79d72f5e0f2e0301a/setup.py", line 93, in <module>
2025-09-17T17:46:38,251       setup(
2025-09-17T17:46:38,252     File "/usr/local/lib/python3.9/dist-packages/setuptools/__init__.py", line 115, in setup
2025-09-17T17:46:38,252       return distutils.core.setup(**attrs)
2025-09-17T17:46:38,252     File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/core.py", line 186, in setup
2025-09-17T17:46:38,253       return run_commands(dist)
2025-09-17T17:46:38,253     File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands
2025-09-17T17:46:38,253       dist.run_commands()
2025-09-17T17:46:38,253     File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands
2025-09-17T17:46:38,254       self.run_command(cmd)
2025-09-17T17:46:38,255     File "/usr/local/lib/python3.9/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-09-17T17:46:38,255       super().run_command(command)
2025-09-17T17:46:38,256     File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-09-17T17:46:38,256       cmd_obj.run()
2025-09-17T17:46:38,257     File "/usr/local/lib/python3.9/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run
2025-09-17T17:46:38,257       self.run_command("build")
2025-09-17T17:46:38,258     File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command
2025-09-17T17:46:38,258       self.distribution.run_command(command)
2025-09-17T17:46:38,258     File "/usr/local/lib/python3.9/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-09-17T17:46:38,259       super().run_command(command)
2025-09-17T17:46:38,259     File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-09-17T17:46:38,260       cmd_obj.run()
2025-09-17T17:46:38,260     File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/command/build.py", line 135, in run
2025-09-17T17:46:38,261       self.run_command(cmd_name)
2025-09-17T17:46:38,261     File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command
2025-09-17T17:46:38,261       self.distribution.run_command(command)
2025-09-17T17:46:38,262     File "/usr/local/lib/python3.9/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-09-17T17:46:38,262       super().run_command(command)
2025-09-17T17:46:38,263     File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-09-17T17:46:38,263       cmd_obj.run()
2025-09-17T17:46:38,264     File "/tmp/pip-wheel-mla62gzm/unifrac_d19f25feb84847c79d72f5e0f2e0301a/setup.py", line 57, in run
2025-09-17T17:46:38,264       self.run_compile_ssu()
2025-09-17T17:46:38,264     File "/tmp/pip-wheel-mla62gzm/unifrac_d19f25feb84847c79d72f5e0f2e0301a/setup.py", line 61, in run_compile_ssu
2025-09-17T17:46:38,264       self.execute(compile_ssu, [], 'Compiling SSU')
2025-09-17T17:46:38,265     File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py", line 384, in execute
2025-09-17T17:46:38,265       util.execute(func, args, msg, dry_run=self.dry_run)
2025-09-17T17:46:38,265     File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/util.py", line 334, in execute
2025-09-17T17:46:38,267       func(*args)
2025-09-17T17:46:38,267     File "/tmp/pip-wheel-mla62gzm/unifrac_d19f25feb84847c79d72f5e0f2e0301a/setup.py", line 46, in compile_ssu
2025-09-17T17:46:38,267       cmd = ["ln", "-s", os.environ.get('CONDA_PREFIX') + '/include/' + f,
2025-09-17T17:46:38,268   TypeError: unsupported operand type(s) for +: 'NoneType' and 'str'
2025-09-17T17:46:38,424   Building wheel for unifrac (setup.py): finished with status 'error'
2025-09-17T17:46:38,425   ERROR: Failed building wheel for unifrac
2025-09-17T17:46:38,425   Running setup.py clean for unifrac
2025-09-17T17:46:38,426   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-mla62gzm/unifrac_d19f25feb84847c79d72f5e0f2e0301a/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-mla62gzm/unifrac_d19f25feb84847c79d72f5e0f2e0301a/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2025-09-17T17:46:40,173   running clean
2025-09-17T17:46:40,226   removing 'build/lib.linux-armv7l-cpython-39' (and everything under it)
2025-09-17T17:46:40,232   'build/bdist.linux-armv7l' does not exist -- can't clean it
2025-09-17T17:46:40,232   'build/scripts-3.9' does not exist -- can't clean it
2025-09-17T17:46:40,232   removing 'build'
2025-09-17T17:46:40,375 Failed to build unifrac
2025-09-17T17:46:40,376 ERROR: Failed to build one or more wheels
2025-09-17T17:46:40,376 Exception information:
2025-09-17T17:46:40,376 Traceback (most recent call last):
2025-09-17T17:46:40,376   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 223, in _main
2025-09-17T17:46:40,376     status = self.run(options, args)
2025-09-17T17:46:40,376   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 180, in wrapper
2025-09-17T17:46:40,376     return func(self, options, args)
2025-09-17T17:46:40,376   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 194, in run
2025-09-17T17:46:40,376     raise CommandError(
2025-09-17T17:46:40,376 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-09-17T17:46:40,379 Removed build tracker: '/tmp/pip-req-tracker-ufm5cpl0'