2025-09-18T01:08:44,852 Created temporary directory: /tmp/pip-ephem-wheel-cache-uzhs5sa2 2025-09-18T01:08:44,854 Created temporary directory: /tmp/pip-req-tracker-h08dh_lw 2025-09-18T01:08:44,854 Initialized build tracking at /tmp/pip-req-tracker-h08dh_lw 2025-09-18T01:08:44,854 Created build tracker: /tmp/pip-req-tracker-h08dh_lw 2025-09-18T01:08:44,855 Entered build tracker: /tmp/pip-req-tracker-h08dh_lw 2025-09-18T01:08:44,855 Created temporary directory: /tmp/pip-wheel-q7t82klo 2025-09-18T01:08:44,875 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple, https://www.piwheels.org/simple 2025-09-18T01:08:44,876 2 location(s) to search for versions of bionetgen: 2025-09-18T01:08:44,876 * https://pypi.org/simple/bionetgen/ 2025-09-18T01:08:44,876 * https://www.piwheels.org/simple/bionetgen/ 2025-09-18T01:08:44,877 Fetching project page and analyzing links: https://pypi.org/simple/bionetgen/ 2025-09-18T01:08:44,877 Getting page https://pypi.org/simple/bionetgen/ 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https://files.pythonhosted.org/packages/b2/7c/b24930fdf77b18acde646de235225fe9a514423e86259ea00bd058c1f042/bionetgen-0.3.9.tar.gz#sha256=d4615dd84cb91f3924060b1b5fb93e92ce50b972e22a39042543a02c7651951d (from https://pypi.org/simple/bionetgen/), version: 0.3.9 2025-09-18T01:08:45,058 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/15/44/132c8c88f5960ce1c3221f9f6c1d4fb33a0fb65a11f7b5446d146f4ea5a4/bionetgen-0.4.0-py3-none-any.whl#sha256=42f3e13e55f1979a2382e26f58f19d04f06d6f81c5dfa7db9ca3ec96358dff57 (from https://pypi.org/simple/bionetgen/) 2025-09-18T01:08:45,058 Found link https://files.pythonhosted.org/packages/94/e8/0645b78778349e6e6c16db375db8c525b1955335f7d1ef596dbae0ea1699/bionetgen-0.4.0.tar.gz#sha256=01a65649f959d598afc5865dbde9a5257e4693e74aed7f5419cb919ad830759e (from https://pypi.org/simple/bionetgen/), version: 0.4.0 2025-09-18T01:08:45,058 Skipping link: No binaries permitted for bionetgen: 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https://files.pythonhosted.org/packages/cd/89/1967b9731f3eb80ca652c6940a7e81d42c3efef15e6ee58ddcb98dd55fa8/bionetgen-0.4.4-py3-none-any.whl#sha256=c5eab0a55c3e214235cffc3e936ecdd7d9ad38000666f7c10fee9f98f84f3ea8 (from https://pypi.org/simple/bionetgen/) 2025-09-18T01:08:45,060 Found link https://files.pythonhosted.org/packages/9b/a3/bd276dc1574ca60bc312570909df86b0466f4e5d3408b63a38e05403f2f2/bionetgen-0.4.4.tar.gz#sha256=9b5a044bdc0b5132435e1128b2869e6442574f8ffcd7844e4a23beffbeb99c56 (from https://pypi.org/simple/bionetgen/), version: 0.4.4 2025-09-18T01:08:45,061 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/b0/b3/93a6053a7574695e325daf76f182bfd6d53a0eea4e231fd6466e2716cabc/bionetgen-0.4.5-py3-none-any.whl#sha256=40204e1b67b02760f1d78bb170b29089171398ddc4a8bcfb4ee8e41c0879e162 (from https://pypi.org/simple/bionetgen/) 2025-09-18T01:08:45,061 Found link 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https://files.pythonhosted.org/packages/28/7a/cc04ba3275ff4ec501f07f06ca515b29c6ad7302a9fe9aa9caee5c146c2e/bionetgen-0.8.3-py3-none-any.whl#sha256=ec4bd0726881346a5612a6158c648f47bd13a51446e33da23d3a8ae5e9200070 (from https://pypi.org/simple/bionetgen/) 2025-09-18T01:08:45,076 Found link https://files.pythonhosted.org/packages/b9/01/596eca29caff9676c8b309493f676f6f9b5086e1764b6882ef3573805c67/bionetgen-0.8.3.tar.gz#sha256=135ceb8540a45e9effd751a1f5860baea4d0b7a7efff83336f7ef672fd580377 (from https://pypi.org/simple/bionetgen/), version: 0.8.3 2025-09-18T01:08:45,076 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/20/43/50a635e691e4d614631bbef39b47f79b0f18f77d54e01f02cfda4090ae81/bionetgen-0.8.4-py3-none-any.whl#sha256=8d632350d7e8295518ed9463d0834e5ca542c424b43a3fc9d05da9b45ba9bebc (from https://pypi.org/simple/bionetgen/) 2025-09-18T01:08:45,076 Found link https://files.pythonhosted.org/packages/18/fe/79010fe793f171431e1692d760a46eba1ab7f4fcaa26f69e80ad19c84601/bionetgen-0.8.4.tar.gz#sha256=8ed967ac13c364565500f05cab56860f2734a2ba1dd19fcac756c1691b16973f (from https://pypi.org/simple/bionetgen/), version: 0.8.4 2025-09-18T01:08:45,077 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/d0/19/ca34e1c92a1f9ea2b8cbb9583c34bc1e6729e27376e7811865b9279f1da3/bionetgen-0.8.5-py3-none-any.whl#sha256=000f355ebb13b301bab53acf8021ab2d0a9723e0ac7d2eb82b10b3f495ec6eda (from https://pypi.org/simple/bionetgen/) 2025-09-18T01:08:45,077 Found link https://files.pythonhosted.org/packages/85/6d/ce1d304f8554d5d4126f6c0f2f8cafc0f00e6abf7de47f0225d5ffa8c3c3/bionetgen-0.8.5.tar.gz#sha256=fa4b3b40b96231ab5ef0d0ad2974af56ba97fb1f9c075e634de78f6d3e464f0a (from https://pypi.org/simple/bionetgen/), version: 0.8.5 2025-09-18T01:08:45,077 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/76/1b/767705c9d10fb44d2b4275c55590d0f63a1724b44163c436ea3db65f68a1/bionetgen-0.8.6-py3-none-any.whl#sha256=9bb77e159853831bda1efa6f8cb59f4171aa33fdfdc02ae2795553a851415c5f (from https://pypi.org/simple/bionetgen/) 2025-09-18T01:08:45,077 Found link https://files.pythonhosted.org/packages/65/46/9131c7ff7beccd577f7fec1421ac10fb54d5541e1b101a2a55870296ea5e/bionetgen-0.8.6.tar.gz#sha256=5c0f38d91b940f0c93e4845c8e3c880f4aec3c02b72332f078d4155a2e510313 (from https://pypi.org/simple/bionetgen/), version: 0.8.6 2025-09-18T01:08:45,078 Fetching project page and analyzing links: https://www.piwheels.org/simple/bionetgen/ 2025-09-18T01:08:45,078 Getting page https://www.piwheels.org/simple/bionetgen/ 2025-09-18T01:08:45,079 Found index url https://www.piwheels.org/simple 2025-09-18T01:08:45,081 Starting new HTTPS connection (1): www.piwheels.org:443 2025-09-18T01:08:45,145 https://www.piwheels.org:443 "GET /simple/bionetgen/ HTTP/1.1" 200 625 2025-09-18T01:08:45,152 Skipping link: No binaries permitted for bionetgen: https://archive1.piwheels.org/simple/bionetgen/bionetgen-0.8.1-py3-none-any.whl#sha256=8f7299d46a5e408f46b306dcdbd75bfcdbbe4200195f84c035a24154009459f0 (from https://www.piwheels.org/simple/bionetgen/) 2025-09-18T01:08:45,153 Skipping link: No binaries permitted for bionetgen: https://archive1.piwheels.org/simple/bionetgen/bionetgen-0.8.0-py3-none-any.whl#sha256=1892489ca2c73760c8a88d4651fefe6bfa9f0d2174d8376cfee881268b0b4d3d (from https://www.piwheels.org/simple/bionetgen/) 2025-09-18T01:08:45,153 Skipping link: No binaries permitted for bionetgen: https://archive1.piwheels.org/simple/bionetgen/bionetgen-0.3.5-py3-none-any.whl#sha256=a940a7f8be7f8b9f9208d837c2530709df723e59fdce7f729104b124537048ef (from https://www.piwheels.org/simple/bionetgen/) 2025-09-18T01:08:45,153 Skipping link: No binaries permitted for bionetgen: https://archive1.piwheels.org/simple/bionetgen/bionetgen-0.3.4-py3-none-any.whl#sha256=1363d4463b7d016634f411e5714484ab005566c6194146f8e28389fa80d6bd8e (from https://www.piwheels.org/simple/bionetgen/) 2025-09-18T01:08:45,154 Skipping link: No binaries permitted for bionetgen: https://archive1.piwheels.org/simple/bionetgen/bionetgen-0.3.3-py3-none-any.whl#sha256=6406b457ade36823c9ed9f97e2ef2f80c0cd78826b28346f869cff7726c0ce14 (from https://www.piwheels.org/simple/bionetgen/) 2025-09-18T01:08:45,154 Skipping link: No binaries permitted for bionetgen: https://archive1.piwheels.org/simple/bionetgen/bionetgen-0.3.1-py3-none-any.whl#sha256=fca4945c5fdf63233bc2923b1ce64c4e6069f15abb0581f7016aab3e31a99040 (from https://www.piwheels.org/simple/bionetgen/) 2025-09-18T01:08:45,154 Skipping link: No binaries permitted for bionetgen: https://archive1.piwheels.org/simple/bionetgen/bionetgen-0.3.0-py3-none-any.whl#sha256=6edb99b707a5cfd75433f906e9d28f809e31110074fc71c3d5d0422be4ba5df2 (from https://www.piwheels.org/simple/bionetgen/) 2025-09-18T01:08:45,154 Skipping link: No binaries permitted for bionetgen: https://archive1.piwheels.org/simple/bionetgen/bionetgen-0.2.9-py3-none-any.whl#sha256=22fc780a6e557c20a3e8bbe6192ef53fdec8ea5376bc17125dae1b50a1efec1d (from https://www.piwheels.org/simple/bionetgen/) 2025-09-18T01:08:45,154 Skipping link: No binaries permitted for bionetgen: https://archive1.piwheels.org/simple/bionetgen/bionetgen-0.2.7-py3-none-any.whl#sha256=ce9ef4a22cdb47a02688c4e132e24be6b66f4ffd3594b44ed0746df961106db1 (from https://www.piwheels.org/simple/bionetgen/) 2025-09-18T01:08:45,193 Given no hashes to check 1 links for project 'bionetgen': discarding no candidates 2025-09-18T01:08:45,250 Collecting bionetgen==0.8.6 2025-09-18T01:08:45,252 Created temporary directory: /tmp/pip-unpack-h5v9yalq 2025-09-18T01:08:45,255 Starting new HTTPS connection (1): files.pythonhosted.org:443 2025-09-18T01:08:45,289 https://files.pythonhosted.org:443 "GET /packages/65/46/9131c7ff7beccd577f7fec1421ac10fb54d5541e1b101a2a55870296ea5e/bionetgen-0.8.6.tar.gz HTTP/1.1" 200 11736584 2025-09-18T01:08:45,290 Downloading bionetgen-0.8.6.tar.gz (11.7 MB) 2025-09-18T01:08:50,094 Added bionetgen==0.8.6 from https://files.pythonhosted.org/packages/65/46/9131c7ff7beccd577f7fec1421ac10fb54d5541e1b101a2a55870296ea5e/bionetgen-0.8.6.tar.gz#sha256=5c0f38d91b940f0c93e4845c8e3c880f4aec3c02b72332f078d4155a2e510313 to build tracker '/tmp/pip-req-tracker-h08dh_lw' 2025-09-18T01:08:50,095 Running setup.py (path:/tmp/pip-wheel-q7t82klo/bionetgen_1c6fd868896e4e3cb463428f2ae636f3/setup.py) egg_info for package bionetgen 2025-09-18T01:08:50,096 Created temporary directory: /tmp/pip-pip-egg-info-qyhtkrfd 2025-09-18T01:08:50,096 Running command python setup.py egg_info 2025-09-18T01:08:54,732 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-18T01:08:54,734 Requirement already satisfied: numpy in /home/piwheels/.local/lib/python3.9/site-packages (1.26.4) 2025-09-18T01:09:02,012 https://github.com/RuleWorld/bionetgen/releases/download/BioNetGen-2.9.3/BioNetGen-2.9.3-linux.tar.gz bng.gz 2025-09-18T01:09:02,012 BioNetGen-2.9.3 2025-09-18T01:09:02,013 https://github.com/RuleWorld/bionetgen/releases/download/BioNetGen-2.9.3/BioNetGen-2.9.3-mac.tar.gz bng.gz 2025-09-18T01:09:02,013 BioNetGen-2.9.3 2025-09-18T01:09:02,013 https://github.com/RuleWorld/bionetgen/releases/download/BioNetGen-2.9.3/BioNetGen-2.9.3-win.tar.gz bng.gz 2025-09-18T01:09:02,013 BioNetGen-2.9.3 2025-09-18T01:09:02,014 running egg_info 2025-09-18T01:09:02,041 creating /tmp/pip-pip-egg-info-qyhtkrfd/bionetgen.egg-info 2025-09-18T01:09:02,042 writing /tmp/pip-pip-egg-info-qyhtkrfd/bionetgen.egg-info/PKG-INFO 2025-09-18T01:09:02,047 writing dependency_links to /tmp/pip-pip-egg-info-qyhtkrfd/bionetgen.egg-info/dependency_links.txt 2025-09-18T01:09:02,048 writing entry points to /tmp/pip-pip-egg-info-qyhtkrfd/bionetgen.egg-info/entry_points.txt 2025-09-18T01:09:02,050 writing requirements to /tmp/pip-pip-egg-info-qyhtkrfd/bionetgen.egg-info/requires.txt 2025-09-18T01:09:02,052 writing top-level names to /tmp/pip-pip-egg-info-qyhtkrfd/bionetgen.egg-info/top_level.txt 2025-09-18T01:09:02,053 writing manifest file '/tmp/pip-pip-egg-info-qyhtkrfd/bionetgen.egg-info/SOURCES.txt' 2025-09-18T01:09:02,168 reading manifest file '/tmp/pip-pip-egg-info-qyhtkrfd/bionetgen.egg-info/SOURCES.txt' 2025-09-18T01:09:02,170 reading manifest template 'MANIFEST.in' 2025-09-18T01:09:02,172 warning: manifest_maker: MANIFEST.in, line 1: 'recursive-include' expects ... 2025-09-18T01:09:02,172 warning: manifest_maker: MANIFEST.in, line 2: 'recursive-include' expects ... 2025-09-18T01:09:02,440 adding license file 'LICENSE' 2025-09-18T01:09:02,466 writing manifest file '/tmp/pip-pip-egg-info-qyhtkrfd/bionetgen.egg-info/SOURCES.txt' 2025-09-18T01:09:02,564 Source in /tmp/pip-wheel-q7t82klo/bionetgen_1c6fd868896e4e3cb463428f2ae636f3 has version 0.8.6, which satisfies requirement bionetgen==0.8.6 from https://files.pythonhosted.org/packages/65/46/9131c7ff7beccd577f7fec1421ac10fb54d5541e1b101a2a55870296ea5e/bionetgen-0.8.6.tar.gz#sha256=5c0f38d91b940f0c93e4845c8e3c880f4aec3c02b72332f078d4155a2e510313 2025-09-18T01:09:02,565 Removed bionetgen==0.8.6 from https://files.pythonhosted.org/packages/65/46/9131c7ff7beccd577f7fec1421ac10fb54d5541e1b101a2a55870296ea5e/bionetgen-0.8.6.tar.gz#sha256=5c0f38d91b940f0c93e4845c8e3c880f4aec3c02b72332f078d4155a2e510313 from build tracker '/tmp/pip-req-tracker-h08dh_lw' 2025-09-18T01:09:02,569 Created temporary directory: /tmp/pip-unpack-zz7hhrto 2025-09-18T01:09:02,570 Building wheels for collected packages: bionetgen 2025-09-18T01:09:02,573 Created temporary directory: /tmp/pip-wheel-ryi3aud4 2025-09-18T01:09:02,574 Building wheel for bionetgen (setup.py): started 2025-09-18T01:09:02,574 Destination directory: /tmp/pip-wheel-ryi3aud4 2025-09-18T01:09:02,574 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-q7t82klo/bionetgen_1c6fd868896e4e3cb463428f2ae636f3/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-q7t82klo/bionetgen_1c6fd868896e4e3cb463428f2ae636f3/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ryi3aud4 2025-09-18T01:09:07,391 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-18T01:09:07,392 Requirement already satisfied: numpy in /home/piwheels/.local/lib/python3.9/site-packages (1.26.4) 2025-09-18T01:09:09,042 https://github.com/RuleWorld/bionetgen/releases/download/BioNetGen-2.9.3/BioNetGen-2.9.3-linux.tar.gz bng.gz 2025-09-18T01:09:09,398 BioNetGen-2.9.3 2025-09-18T01:09:10,060 https://github.com/RuleWorld/bionetgen/releases/download/BioNetGen-2.9.3/BioNetGen-2.9.3-mac.tar.gz bng.gz 2025-09-18T01:09:10,470 BioNetGen-2.9.3 2025-09-18T01:09:12,193 https://github.com/RuleWorld/bionetgen/releases/download/BioNetGen-2.9.3/BioNetGen-2.9.3-win.tar.gz bng.gz 2025-09-18T01:09:13,036 BioNetGen-2.9.3 2025-09-18T01:09:14,734 running bdist_wheel 2025-09-18T01:09:14,869 running build 2025-09-18T01:09:14,869 running build_py 2025-09-18T01:09:14,900 creating build/lib/bionetgen 2025-09-18T01:09:14,902 copying bionetgen/__init__.py -> build/lib/bionetgen 2025-09-18T01:09:14,905 copying bionetgen/main.py -> build/lib/bionetgen 2025-09-18T01:09:14,908 creating build/lib/bionetgen/core 2025-09-18T01:09:14,909 copying bionetgen/core/notebook.py -> build/lib/bionetgen/core 2025-09-18T01:09:14,912 copying bionetgen/core/__init__.py -> build/lib/bionetgen/core 2025-09-18T01:09:14,914 copying bionetgen/core/main.py -> build/lib/bionetgen/core 2025-09-18T01:09:14,916 copying bionetgen/core/exc.py -> build/lib/bionetgen/core 2025-09-18T01:09:14,919 copying bionetgen/core/version.py -> build/lib/bionetgen/core 2025-09-18T01:09:14,921 copying bionetgen/core/defaults.py -> build/lib/bionetgen/core 2025-09-18T01:09:14,924 creating build/lib/bionetgen/atomizer 2025-09-18T01:09:14,926 copying bionetgen/atomizer/atomizeTool.py -> build/lib/bionetgen/atomizer 2025-09-18T01:09:14,928 copying bionetgen/atomizer/sbmlTranslator.py -> build/lib/bionetgen/atomizer 2025-09-18T01:09:14,931 copying bionetgen/atomizer/bngModel.py -> build/lib/bionetgen/atomizer 2025-09-18T01:09:14,935 copying bionetgen/atomizer/__init__.py -> build/lib/bionetgen/atomizer 2025-09-18T01:09:14,937 copying bionetgen/atomizer/sbml2bngl.py -> build/lib/bionetgen/atomizer 2025-09-18T01:09:14,943 copying bionetgen/atomizer/contextAnalyzer.py -> build/lib/bionetgen/atomizer 2025-09-18T01:09:14,946 copying bionetgen/atomizer/libsbml2bngl.py -> build/lib/bionetgen/atomizer 2025-09-18T01:09:14,950 copying bionetgen/atomizer/sbml2json.py -> build/lib/bionetgen/atomizer 2025-09-18T01:09:14,953 copying bionetgen/atomizer/biogrid.py -> build/lib/bionetgen/atomizer 2025-09-18T01:09:14,956 copying bionetgen/atomizer/contactMap.py -> build/lib/bionetgen/atomizer 2025-09-18T01:09:14,958 copying bionetgen/atomizer/parseAnnotation.py -> build/lib/bionetgen/atomizer 2025-09-18T01:09:14,961 creating build/lib/bionetgen/network 2025-09-18T01:09:14,962 copying bionetgen/network/blocks.py -> build/lib/bionetgen/network 2025-09-18T01:09:14,965 copying bionetgen/network/structs.py -> build/lib/bionetgen/network 2025-09-18T01:09:14,967 copying bionetgen/network/__init__.py -> build/lib/bionetgen/network 2025-09-18T01:09:14,969 copying bionetgen/network/networkparser.py -> build/lib/bionetgen/network 2025-09-18T01:09:14,971 copying bionetgen/network/network.py -> build/lib/bionetgen/network 2025-09-18T01:09:14,974 creating build/lib/bionetgen/simulator 2025-09-18T01:09:14,975 copying bionetgen/simulator/__init__.py -> build/lib/bionetgen/simulator 2025-09-18T01:09:14,977 copying bionetgen/simulator/librrsimulator.py -> build/lib/bionetgen/simulator 2025-09-18T01:09:14,979 copying bionetgen/simulator/simulators.py -> build/lib/bionetgen/simulator 2025-09-18T01:09:14,981 copying bionetgen/simulator/bngsimulator.py -> build/lib/bionetgen/simulator 2025-09-18T01:09:14,983 copying bionetgen/simulator/csimulator.py -> build/lib/bionetgen/simulator 2025-09-18T01:09:14,986 creating build/lib/bionetgen/modelapi 2025-09-18T01:09:14,987 copying bionetgen/modelapi/rulemod.py -> build/lib/bionetgen/modelapi 2025-09-18T01:09:14,989 copying bionetgen/modelapi/blocks.py -> build/lib/bionetgen/modelapi 2025-09-18T01:09:14,992 copying bionetgen/modelapi/bngfile.py -> build/lib/bionetgen/modelapi 2025-09-18T01:09:14,994 copying bionetgen/modelapi/pattern.py -> build/lib/bionetgen/modelapi 2025-09-18T01:09:14,997 copying bionetgen/modelapi/runner.py -> build/lib/bionetgen/modelapi 2025-09-18T01:09:14,999 copying bionetgen/modelapi/structs.py -> build/lib/bionetgen/modelapi 2025-09-18T01:09:15,002 copying bionetgen/modelapi/__init__.py -> build/lib/bionetgen/modelapi 2025-09-18T01:09:15,004 copying bionetgen/modelapi/xmlparsers.py -> build/lib/bionetgen/modelapi 2025-09-18T01:09:15,006 copying bionetgen/modelapi/pattern_reader.py -> build/lib/bionetgen/modelapi 2025-09-18T01:09:15,009 copying bionetgen/modelapi/bngparser.py -> build/lib/bionetgen/modelapi 2025-09-18T01:09:15,011 copying bionetgen/modelapi/model.py -> build/lib/bionetgen/modelapi 2025-09-18T01:09:15,014 creating build/lib/bionetgen/core/tools 2025-09-18T01:09:15,015 copying bionetgen/core/tools/visualize.py -> build/lib/bionetgen/core/tools 2025-09-18T01:09:15,018 copying bionetgen/core/tools/result.py -> build/lib/bionetgen/core/tools 2025-09-18T01:09:15,020 copying bionetgen/core/tools/__init__.py -> build/lib/bionetgen/core/tools 2025-09-18T01:09:15,022 copying bionetgen/core/tools/cli.py -> build/lib/bionetgen/core/tools 2025-09-18T01:09:15,024 copying bionetgen/core/tools/info.py -> build/lib/bionetgen/core/tools 2025-09-18T01:09:15,026 copying bionetgen/core/tools/plot.py -> build/lib/bionetgen/core/tools 2025-09-18T01:09:15,028 copying bionetgen/core/tools/gdiff.py -> build/lib/bionetgen/core/tools 2025-09-18T01:09:15,032 creating build/lib/bionetgen/core/utils 2025-09-18T01:09:15,033 copying bionetgen/core/utils/utils.py -> build/lib/bionetgen/core/utils 2025-09-18T01:09:15,035 copying bionetgen/core/utils/__init__.py -> build/lib/bionetgen/core/utils 2025-09-18T01:09:15,037 copying bionetgen/core/utils/logging.py -> build/lib/bionetgen/core/utils 2025-09-18T01:09:15,040 creating build/lib/bionetgen/atomizer/atomizer 2025-09-18T01:09:15,041 copying bionetgen/atomizer/atomizer/atomizerUtils.py -> build/lib/bionetgen/atomizer/atomizer 2025-09-18T01:09:15,043 copying bionetgen/atomizer/atomizer/moleculeCreation.py -> build/lib/bionetgen/atomizer/atomizer 2025-09-18T01:09:15,046 copying bionetgen/atomizer/atomizer/__init__.py -> build/lib/bionetgen/atomizer/atomizer 2025-09-18T01:09:15,047 copying bionetgen/atomizer/atomizer/detectOntology.py -> build/lib/bionetgen/atomizer/atomizer 2025-09-18T01:09:15,050 copying bionetgen/atomizer/atomizer/atomizationAux.py -> build/lib/bionetgen/atomizer/atomizer 2025-09-18T01:09:15,052 copying bionetgen/atomizer/atomizer/resolveSCT.py -> build/lib/bionetgen/atomizer/atomizer 2025-09-18T01:09:15,056 copying bionetgen/atomizer/atomizer/analyzeRDF.py -> build/lib/bionetgen/atomizer/atomizer 2025-09-18T01:09:15,058 copying bionetgen/atomizer/atomizer/analyzeSBML.py -> build/lib/bionetgen/atomizer/atomizer 2025-09-18T01:09:15,063 creating build/lib/bionetgen/atomizer/merging 2025-09-18T01:09:15,064 copying bionetgen/atomizer/merging/__init__.py -> build/lib/bionetgen/atomizer/merging 2025-09-18T01:09:15,066 copying bionetgen/atomizer/merging/namingDatabase.py -> build/lib/bionetgen/atomizer/merging 2025-09-18T01:09:15,068 copying bionetgen/atomizer/merging/compareNamingConventions.py -> build/lib/bionetgen/atomizer/merging 2025-09-18T01:09:15,071 creating build/lib/bionetgen/atomizer/rulifier 2025-09-18T01:09:15,072 copying bionetgen/atomizer/rulifier/componentGroups.py -> build/lib/bionetgen/atomizer/rulifier 2025-09-18T01:09:15,075 copying bionetgen/atomizer/rulifier/arial10.py -> build/lib/bionetgen/atomizer/rulifier 2025-09-18T01:09:15,077 copying bionetgen/atomizer/rulifier/stateTransitionDiagram.py -> build/lib/bionetgen/atomizer/rulifier 2025-09-18T01:09:15,079 copying bionetgen/atomizer/rulifier/stdgraph.py -> build/lib/bionetgen/atomizer/rulifier 2025-09-18T01:09:15,082 copying bionetgen/atomizer/rulifier/parameterExtraction.py -> build/lib/bionetgen/atomizer/rulifier 2025-09-18T01:09:15,084 copying bionetgen/atomizer/rulifier/__init__.py -> build/lib/bionetgen/atomizer/rulifier 2025-09-18T01:09:15,086 copying bionetgen/atomizer/rulifier/compareModels.py -> build/lib/bionetgen/atomizer/rulifier 2025-09-18T01:09:15,088 copying bionetgen/atomizer/rulifier/postAnalysis.py -> build/lib/bionetgen/atomizer/rulifier 2025-09-18T01:09:15,091 creating build/lib/bionetgen/atomizer/writer 2025-09-18T01:09:15,092 copying bionetgen/atomizer/writer/__init__.py -> build/lib/bionetgen/atomizer/writer 2025-09-18T01:09:15,094 copying bionetgen/atomizer/writer/bnglWriter.py -> build/lib/bionetgen/atomizer/writer 2025-09-18T01:09:15,097 creating build/lib/bionetgen/atomizer/utils 2025-09-18T01:09:15,098 copying bionetgen/atomizer/utils/extractAtomic.py -> build/lib/bionetgen/atomizer/utils 2025-09-18T01:09:15,101 copying bionetgen/atomizer/utils/pathwaycommons.py -> build/lib/bionetgen/atomizer/utils 2025-09-18T01:09:15,103 copying bionetgen/atomizer/utils/__init__.py -> build/lib/bionetgen/atomizer/utils 2025-09-18T01:09:15,105 copying bionetgen/atomizer/utils/structures.py -> build/lib/bionetgen/atomizer/utils 2025-09-18T01:09:15,107 copying bionetgen/atomizer/utils/consoleCommands.py -> build/lib/bionetgen/atomizer/utils 2025-09-18T01:09:15,109 copying bionetgen/atomizer/utils/annotationDeletion.py -> build/lib/bionetgen/atomizer/utils 2025-09-18T01:09:15,112 copying bionetgen/atomizer/utils/annotationResolver.py -> build/lib/bionetgen/atomizer/utils 2025-09-18T01:09:15,114 copying bionetgen/atomizer/utils/util.py -> build/lib/bionetgen/atomizer/utils 2025-09-18T01:09:15,116 copying bionetgen/atomizer/utils/nameNormalizer.py -> build/lib/bionetgen/atomizer/utils 2025-09-18T01:09:15,118 copying bionetgen/atomizer/utils/modelComparison.py -> build/lib/bionetgen/atomizer/utils 2025-09-18T01:09:15,121 copying bionetgen/atomizer/utils/annotationExtender.py -> build/lib/bionetgen/atomizer/utils 2025-09-18T01:09:15,123 copying bionetgen/atomizer/utils/smallStructures.py -> build/lib/bionetgen/atomizer/utils 2025-09-18T01:09:15,126 copying bionetgen/atomizer/utils/readBNGXML.py -> build/lib/bionetgen/atomizer/utils 2025-09-18T01:09:15,128 copying bionetgen/atomizer/utils/annotationExtractor.py -> build/lib/bionetgen/atomizer/utils 2025-09-18T01:09:15,131 copying bionetgen/atomizer/utils/annotationComparison.py -> build/lib/bionetgen/atomizer/utils 2025-09-18T01:09:15,133 running egg_info 2025-09-18T01:09:15,161 writing bionetgen.egg-info/PKG-INFO 2025-09-18T01:09:15,165 writing dependency_links to bionetgen.egg-info/dependency_links.txt 2025-09-18T01:09:15,166 writing entry points to bionetgen.egg-info/entry_points.txt 2025-09-18T01:09:15,168 writing requirements to bionetgen.egg-info/requires.txt 2025-09-18T01:09:15,169 writing top-level names to bionetgen.egg-info/top_level.txt 2025-09-18T01:09:15,218 reading manifest file 'bionetgen.egg-info/SOURCES.txt' 2025-09-18T01:09:15,316 reading manifest template 'MANIFEST.in' 2025-09-18T01:09:15,316 warning: manifest_maker: MANIFEST.in, line 1: 'recursive-include' expects ... 2025-09-18T01:09:15,317 warning: manifest_maker: MANIFEST.in, line 2: 'recursive-include' expects ... 2025-09-18T01:09:15,503 adding license file 'LICENSE' 2025-09-18T01:09:15,540 writing manifest file 'bionetgen.egg-info/SOURCES.txt' 2025-09-18T01:09:15,544 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bionetgen.assets' is absent from the `packages` configuration. 2025-09-18T01:09:15,544 !! 2025-09-18T01:09:15,544 ******************************************************************************** 2025-09-18T01:09:15,545 ############################ 2025-09-18T01:09:15,545 # Package would be ignored # 2025-09-18T01:09:15,545 ############################ 2025-09-18T01:09:15,545 Python recognizes 'bionetgen.assets' as an importable package[^1], 2025-09-18T01:09:15,545 but it is absent from setuptools' `packages` configuration. 2025-09-18T01:09:15,546 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T01:09:15,546 package, please make sure that 'bionetgen.assets' is explicitly added 2025-09-18T01:09:15,546 to the `packages` configuration field. 2025-09-18T01:09:15,546 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T01:09:15,546 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T01:09:15,547 instead of `find_packages(...)`/`find:`). 2025-09-18T01:09:15,547 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T01:09:15,547 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T01:09:15,548 If you don't want 'bionetgen.assets' to be distributed and are 2025-09-18T01:09:15,548 already explicitly excluding 'bionetgen.assets' via 2025-09-18T01:09:15,548 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T01:09:15,548 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T01:09:15,548 combination with a more fine grained `package-data` configuration. 2025-09-18T01:09:15,549 You can read more about "package data files" on setuptools documentation page: 2025-09-18T01:09:15,549 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T01:09:15,550 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T01:09:15,550 even if it does not contain any `.py` files. 2025-09-18T01:09:15,550 On the other hand, currently there is no concept of package data 2025-09-18T01:09:15,550 directory, all directories are treated like packages. 2025-09-18T01:09:15,551 ******************************************************************************** 2025-09-18T01:09:15,551 !! 2025-09-18T01:09:15,551 check.warn(importable) 2025-09-18T01:09:15,629 creating build/lib/bionetgen/assets 2025-09-18T01:09:15,630 copying bionetgen/assets/BNGVERSION -> build/lib/bionetgen/assets 2025-09-18T01:09:15,632 copying bionetgen/assets/VERSION -> build/lib/bionetgen/assets 2025-09-18T01:09:15,633 copying bionetgen/assets/bionetgen-temp.ipynb -> build/lib/bionetgen/assets 2025-09-18T01:09:15,636 copying bionetgen/assets/bionetgen.ipynb -> build/lib/bionetgen/assets 2025-09-18T01:09:15,639 copying bionetgen/assets/get_version_json.py -> build/lib/bionetgen/assets 2025-09-18T01:09:15,641 copying bionetgen/assets/ghapi.json -> build/lib/bionetgen/assets 2025-09-18T01:09:15,644 creating build/lib/bionetgen/bng-linux 2025-09-18T01:09:15,644 copying bionetgen/bng-linux/BNG2.pl -> build/lib/bionetgen/bng-linux 2025-09-18T01:09:15,647 copying bionetgen/bng-linux/VERSION -> build/lib/bionetgen/bng-linux 2025-09-18T01:09:15,650 creating build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,651 copying bionetgen/bng-linux/Perl2/._Aux2 -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,653 copying bionetgen/bng-linux/Perl2/._BNGAction.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,655 copying bionetgen/bng-linux/Perl2/._BNGMessages.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,657 copying bionetgen/bng-linux/Perl2/._BNGModel.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,659 copying bionetgen/bng-linux/Perl2/._BNGOptions.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,661 copying bionetgen/bng-linux/Perl2/._BNGOutput.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,663 copying bionetgen/bng-linux/Perl2/._BNGUtils.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,665 copying bionetgen/bng-linux/Perl2/._Boolean2BNGL -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,667 copying bionetgen/bng-linux/Perl2/._Cache.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,669 copying bionetgen/bng-linux/Perl2/._CartesianProduct.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,671 copying bionetgen/bng-linux/Perl2/._Compartment.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,673 copying bionetgen/bng-linux/Perl2/._CompartmentList.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,675 copying bionetgen/bng-linux/Perl2/._Component.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,677 copying bionetgen/bng-linux/Perl2/._ComponentType.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,679 copying bionetgen/bng-linux/Perl2/._Console.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,681 copying bionetgen/bng-linux/Perl2/._EnergyPattern.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,683 copying bionetgen/bng-linux/Perl2/._Expression.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,685 copying bionetgen/bng-linux/Perl2/._Function.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,687 copying bionetgen/bng-linux/Perl2/._HNauty.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,689 copying bionetgen/bng-linux/Perl2/._MacroBNG2.pl -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,691 copying bionetgen/bng-linux/Perl2/._MacroBNGModel.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,693 copying bionetgen/bng-linux/Perl2/._Map.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,695 copying bionetgen/bng-linux/Perl2/._ModelWrapper.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,698 copying bionetgen/bng-linux/Perl2/._Molecule.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,700 copying bionetgen/bng-linux/Perl2/._MoleculeType.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,702 copying bionetgen/bng-linux/Perl2/._MoleculeTypesList.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,704 copying bionetgen/bng-linux/Perl2/._Observable.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,706 copying bionetgen/bng-linux/Perl2/._Param.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,708 copying bionetgen/bng-linux/Perl2/._ParamList.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,710 copying bionetgen/bng-linux/Perl2/._Population.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,712 copying bionetgen/bng-linux/Perl2/._PopulationList.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,714 copying bionetgen/bng-linux/Perl2/._RateLaw.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,716 copying bionetgen/bng-linux/Perl2/._RefineRule.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,718 copying bionetgen/bng-linux/Perl2/._Rxn.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,720 copying bionetgen/bng-linux/Perl2/._RxnList.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,722 copying bionetgen/bng-linux/Perl2/._RxnRule.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,724 copying bionetgen/bng-linux/Perl2/._SBMLMultiAux.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,726 copying bionetgen/bng-linux/Perl2/._Species.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,728 copying bionetgen/bng-linux/Perl2/._SpeciesGraph.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,730 copying bionetgen/bng-linux/Perl2/._SpeciesList.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,733 copying bionetgen/bng-linux/Perl2/._Visualization -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,735 copying bionetgen/bng-linux/Perl2/._XML -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,737 copying bionetgen/bng-linux/Perl2/._XMLReader.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,739 copying bionetgen/bng-linux/Perl2/._auto_hpp.pl -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,741 copying bionetgen/bng-linux/Perl2/._diff_net.pl -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,743 copying bionetgen/bng-linux/Perl2/._sample_vars_2.pl -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,745 copying bionetgen/bng-linux/Perl2/._scan_var.pl -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,747 copying bionetgen/bng-linux/Perl2/._test_cartesianproduct.pl -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,749 copying bionetgen/bng-linux/Perl2/._verify.pl -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,751 copying bionetgen/bng-linux/Perl2/BNGAction.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,756 copying bionetgen/bng-linux/Perl2/BNGMessages.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,758 copying bionetgen/bng-linux/Perl2/BNGModel.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,763 copying bionetgen/bng-linux/Perl2/BNGOptions.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,765 copying bionetgen/bng-linux/Perl2/BNGOutput.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,771 copying bionetgen/bng-linux/Perl2/BNGUtils.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,774 copying bionetgen/bng-linux/Perl2/Cache.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,776 copying bionetgen/bng-linux/Perl2/CartesianProduct.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,778 copying bionetgen/bng-linux/Perl2/Compartment.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,781 copying bionetgen/bng-linux/Perl2/CompartmentList.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,784 copying bionetgen/bng-linux/Perl2/Component.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,786 copying bionetgen/bng-linux/Perl2/ComponentType.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,789 copying bionetgen/bng-linux/Perl2/Console.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,791 copying bionetgen/bng-linux/Perl2/EnergyPattern.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,794 copying bionetgen/bng-linux/Perl2/Expression.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,798 copying bionetgen/bng-linux/Perl2/Function.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,800 copying bionetgen/bng-linux/Perl2/HNauty.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,803 copying bionetgen/bng-linux/Perl2/MacroBNG2.pl -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,805 copying bionetgen/bng-linux/Perl2/MacroBNGModel.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,809 copying bionetgen/bng-linux/Perl2/Map.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,812 copying bionetgen/bng-linux/Perl2/ModelWrapper.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,814 copying bionetgen/bng-linux/Perl2/Molecule.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,817 copying bionetgen/bng-linux/Perl2/MoleculeType.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,820 copying bionetgen/bng-linux/Perl2/MoleculeTypesList.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,822 copying bionetgen/bng-linux/Perl2/Observable.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,825 copying bionetgen/bng-linux/Perl2/Param.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,828 copying bionetgen/bng-linux/Perl2/ParamList.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,831 copying bionetgen/bng-linux/Perl2/Population.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,833 copying bionetgen/bng-linux/Perl2/PopulationList.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,835 copying bionetgen/bng-linux/Perl2/RateLaw.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,838 copying bionetgen/bng-linux/Perl2/RefineRule.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,841 copying bionetgen/bng-linux/Perl2/Rxn.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,844 copying bionetgen/bng-linux/Perl2/RxnList.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,847 copying bionetgen/bng-linux/Perl2/RxnRule.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,857 copying bionetgen/bng-linux/Perl2/SBMLMultiAux.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,860 copying bionetgen/bng-linux/Perl2/Species.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,863 copying bionetgen/bng-linux/Perl2/SpeciesGraph.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,867 copying bionetgen/bng-linux/Perl2/SpeciesList.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,870 copying bionetgen/bng-linux/Perl2/XMLReader.pm -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,872 copying bionetgen/bng-linux/Perl2/auto_hpp.pl -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,875 copying bionetgen/bng-linux/Perl2/diff_net.pl -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,878 copying bionetgen/bng-linux/Perl2/sample_vars_2.pl -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,882 copying bionetgen/bng-linux/Perl2/scan_var.pl -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,886 copying bionetgen/bng-linux/Perl2/test_cartesianproduct.pl -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,888 copying bionetgen/bng-linux/Perl2/verify.pl -> build/lib/bionetgen/bng-linux/Perl2 2025-09-18T01:09:15,890 creating build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,891 copying bionetgen/bng-linux/Perl2/Aux2/._MakeBin.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,893 copying bionetgen/bng-linux/Perl2/Aux2/._bnglstat.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,895 copying bionetgen/bng-linux/Perl2/Aux2/._count_blocks.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,897 copying bionetgen/bng-linux/Perl2/Aux2/._count_lines.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,899 copying bionetgen/bng-linux/Perl2/Aux2/._countdown.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,901 copying bionetgen/bng-linux/Perl2/Aux2/._diff_cdat.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,903 copying bionetgen/bng-linux/Perl2/Aux2/._express.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,905 copying bionetgen/bng-linux/Perl2/Aux2/._express_main.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,907 copying bionetgen/bng-linux/Perl2/Aux2/._group_size.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,909 copying bionetgen/bng-linux/Perl2/Aux2/._runBNG.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,911 copying bionetgen/bng-linux/Perl2/Aux2/._test.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,913 copying bionetgen/bng-linux/Perl2/Aux2/._test_compartment.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,915 copying bionetgen/bng-linux/Perl2/Aux2/._test_molorder.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,917 copying bionetgen/bng-linux/Perl2/Aux2/._test_redirect.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,919 copying bionetgen/bng-linux/Perl2/Aux2/._test_sub.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,921 copying bionetgen/bng-linux/Perl2/Aux2/MakeBin.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,923 copying bionetgen/bng-linux/Perl2/Aux2/bnglstat.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,925 copying bionetgen/bng-linux/Perl2/Aux2/count_blocks.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,927 copying bionetgen/bng-linux/Perl2/Aux2/count_lines.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,929 copying bionetgen/bng-linux/Perl2/Aux2/countdown.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,931 copying bionetgen/bng-linux/Perl2/Aux2/diff_cdat.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,934 copying bionetgen/bng-linux/Perl2/Aux2/express.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,936 copying bionetgen/bng-linux/Perl2/Aux2/express_main.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,938 copying bionetgen/bng-linux/Perl2/Aux2/group_size.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,940 copying bionetgen/bng-linux/Perl2/Aux2/runBNG.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,942 copying bionetgen/bng-linux/Perl2/Aux2/test.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,944 copying bionetgen/bng-linux/Perl2/Aux2/test_compartment.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,946 copying bionetgen/bng-linux/Perl2/Aux2/test_molorder.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,949 copying bionetgen/bng-linux/Perl2/Aux2/test_redirect.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,951 copying bionetgen/bng-linux/Perl2/Aux2/test_sub.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:15,953 creating build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:15,953 copying bionetgen/bng-linux/Perl2/Boolean2BNGL/._ABC_example.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:15,956 copying bionetgen/bng-linux/Perl2/Boolean2BNGL/._Boolean2BNGL.pl -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:15,958 copying bionetgen/bng-linux/Perl2/Boolean2BNGL/._Tcell_model_Nov2013_LAH.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:15,960 copying bionetgen/bng-linux/Perl2/Boolean2BNGL/._Tcell_model_Oct2013.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:15,962 copying bionetgen/bng-linux/Perl2/Boolean2BNGL/._Tcell_model_v16.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:15,964 copying bionetgen/bng-linux/Perl2/Boolean2BNGL/ABC_example.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:15,966 copying bionetgen/bng-linux/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:15,969 copying bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:15,971 copying bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:15,973 copying bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:15,975 creating build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:15,976 copying bionetgen/bng-linux/Perl2/Visualization/._ContactMap.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:15,978 copying bionetgen/bng-linux/Perl2/Visualization/._GML.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:15,980 copying bionetgen/bng-linux/Perl2/Visualization/._NetworkGraph.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:15,982 copying bionetgen/bng-linux/Perl2/Visualization/._ProcessGraph.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:15,984 copying bionetgen/bng-linux/Perl2/Visualization/._README -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:15,986 copying bionetgen/bng-linux/Perl2/Visualization/._RINF.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:15,988 copying bionetgen/bng-linux/Perl2/Visualization/._StructureGraph.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:15,990 copying bionetgen/bng-linux/Perl2/Visualization/._VisOptParse.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:15,992 copying bionetgen/bng-linux/Perl2/Visualization/._Viz.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:15,994 copying bionetgen/bng-linux/Perl2/Visualization/._analyze.pl -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:15,996 copying bionetgen/bng-linux/Perl2/Visualization/._readGML.pl -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:15,998 copying bionetgen/bng-linux/Perl2/Visualization/._visualize.pl -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:16,001 copying bionetgen/bng-linux/Perl2/Visualization/ContactMap.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:16,003 copying bionetgen/bng-linux/Perl2/Visualization/GML.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:16,006 copying bionetgen/bng-linux/Perl2/Visualization/NetworkGraph.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:16,009 copying bionetgen/bng-linux/Perl2/Visualization/ProcessGraph.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:16,012 copying bionetgen/bng-linux/Perl2/Visualization/README -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:16,014 copying bionetgen/bng-linux/Perl2/Visualization/RINF.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:16,016 copying bionetgen/bng-linux/Perl2/Visualization/StructureGraph.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:16,019 copying bionetgen/bng-linux/Perl2/Visualization/VisOptParse.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:16,021 copying bionetgen/bng-linux/Perl2/Visualization/Viz.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:16,025 copying bionetgen/bng-linux/Perl2/Visualization/analyze.pl -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:16,028 copying bionetgen/bng-linux/Perl2/Visualization/readGML.pl -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:16,030 copying bionetgen/bng-linux/Perl2/Visualization/visualize.pl -> build/lib/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:16,033 creating build/lib/bionetgen/bng-linux/Perl2/XML 2025-09-18T01:09:16,033 copying bionetgen/bng-linux/Perl2/XML/._TreePP.pm -> build/lib/bionetgen/bng-linux/Perl2/XML 2025-09-18T01:09:16,036 copying bionetgen/bng-linux/Perl2/XML/TreePP.pm -> build/lib/bionetgen/bng-linux/Perl2/XML 2025-09-18T01:09:16,039 creating build/lib/bionetgen/bng-linux/bin 2025-09-18T01:09:16,040 copying bionetgen/bng-linux/bin/NFsim -> build/lib/bionetgen/bng-linux/bin 2025-09-18T01:09:16,108 copying bionetgen/bng-linux/bin/run_network -> build/lib/bionetgen/bng-linux/bin 2025-09-18T01:09:16,158 copying bionetgen/bng-linux/bin/sundials-config -> build/lib/bionetgen/bng-linux/bin 2025-09-18T01:09:16,160 creating build/lib/bionetgen/bng-mac 2025-09-18T01:09:16,161 copying bionetgen/bng-mac/BNG2.pl -> build/lib/bionetgen/bng-mac 2025-09-18T01:09:16,165 copying bionetgen/bng-mac/VERSION -> build/lib/bionetgen/bng-mac 2025-09-18T01:09:16,167 creating build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,168 copying bionetgen/bng-mac/Perl2/._Aux2 -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,171 copying bionetgen/bng-mac/Perl2/._BNGAction.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,173 copying bionetgen/bng-mac/Perl2/._BNGMessages.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,176 copying bionetgen/bng-mac/Perl2/._BNGModel.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,178 copying bionetgen/bng-mac/Perl2/._BNGOptions.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,180 copying bionetgen/bng-mac/Perl2/._BNGOutput.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,183 copying bionetgen/bng-mac/Perl2/._BNGUtils.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,185 copying bionetgen/bng-mac/Perl2/._Boolean2BNGL -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,187 copying bionetgen/bng-mac/Perl2/._Cache.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,190 copying bionetgen/bng-mac/Perl2/._CartesianProduct.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,192 copying bionetgen/bng-mac/Perl2/._Compartment.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,194 copying bionetgen/bng-mac/Perl2/._CompartmentList.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,197 copying bionetgen/bng-mac/Perl2/._Component.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,199 copying bionetgen/bng-mac/Perl2/._ComponentType.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,202 copying bionetgen/bng-mac/Perl2/._Console.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,204 copying bionetgen/bng-mac/Perl2/._EnergyPattern.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,207 copying bionetgen/bng-mac/Perl2/._Expression.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,209 copying bionetgen/bng-mac/Perl2/._Function.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,212 copying bionetgen/bng-mac/Perl2/._HNauty.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,214 copying bionetgen/bng-mac/Perl2/._MacroBNG2.pl -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,217 copying bionetgen/bng-mac/Perl2/._MacroBNGModel.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,219 copying bionetgen/bng-mac/Perl2/._Map.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,222 copying bionetgen/bng-mac/Perl2/._ModelWrapper.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,224 copying bionetgen/bng-mac/Perl2/._Molecule.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,226 copying bionetgen/bng-mac/Perl2/._MoleculeType.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,229 copying bionetgen/bng-mac/Perl2/._MoleculeTypesList.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,231 copying bionetgen/bng-mac/Perl2/._Observable.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,234 copying bionetgen/bng-mac/Perl2/._Param.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,236 copying bionetgen/bng-mac/Perl2/._ParamList.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,239 copying bionetgen/bng-mac/Perl2/._Population.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,241 copying bionetgen/bng-mac/Perl2/._PopulationList.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,244 copying bionetgen/bng-mac/Perl2/._RateLaw.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,246 copying bionetgen/bng-mac/Perl2/._RefineRule.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,248 copying bionetgen/bng-mac/Perl2/._Rxn.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,251 copying bionetgen/bng-mac/Perl2/._RxnList.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,253 copying bionetgen/bng-mac/Perl2/._RxnRule.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,256 copying bionetgen/bng-mac/Perl2/._SBMLMultiAux.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,258 copying bionetgen/bng-mac/Perl2/._Species.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,260 copying bionetgen/bng-mac/Perl2/._SpeciesGraph.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,263 copying bionetgen/bng-mac/Perl2/._SpeciesList.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,265 copying bionetgen/bng-mac/Perl2/._Visualization -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,268 copying bionetgen/bng-mac/Perl2/._XML -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,270 copying bionetgen/bng-mac/Perl2/._XMLReader.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,272 copying bionetgen/bng-mac/Perl2/._auto_hpp.pl -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,275 copying bionetgen/bng-mac/Perl2/._diff_net.pl -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,277 copying bionetgen/bng-mac/Perl2/._sample_vars_2.pl -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,279 copying bionetgen/bng-mac/Perl2/._scan_var.pl -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,282 copying bionetgen/bng-mac/Perl2/._test_cartesianproduct.pl -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,284 copying bionetgen/bng-mac/Perl2/._verify.pl -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,287 copying bionetgen/bng-mac/Perl2/BNGAction.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,291 copying bionetgen/bng-mac/Perl2/BNGMessages.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,294 copying bionetgen/bng-mac/Perl2/BNGModel.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,297 copying bionetgen/bng-mac/Perl2/BNGOptions.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,300 copying bionetgen/bng-mac/Perl2/BNGOutput.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,305 copying bionetgen/bng-mac/Perl2/BNGUtils.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,307 copying bionetgen/bng-mac/Perl2/Cache.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,309 copying bionetgen/bng-mac/Perl2/CartesianProduct.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,312 copying bionetgen/bng-mac/Perl2/Compartment.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,315 copying bionetgen/bng-mac/Perl2/CompartmentList.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,317 copying bionetgen/bng-mac/Perl2/Component.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,320 copying bionetgen/bng-mac/Perl2/ComponentType.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,322 copying bionetgen/bng-mac/Perl2/Console.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,325 copying bionetgen/bng-mac/Perl2/EnergyPattern.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,327 copying bionetgen/bng-mac/Perl2/Expression.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,332 copying bionetgen/bng-mac/Perl2/Function.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,335 copying bionetgen/bng-mac/Perl2/HNauty.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,337 copying bionetgen/bng-mac/Perl2/MacroBNG2.pl -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,339 copying bionetgen/bng-mac/Perl2/MacroBNGModel.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,344 copying bionetgen/bng-mac/Perl2/Map.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,347 copying bionetgen/bng-mac/Perl2/ModelWrapper.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,349 copying bionetgen/bng-mac/Perl2/Molecule.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,352 copying bionetgen/bng-mac/Perl2/MoleculeType.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,354 copying bionetgen/bng-mac/Perl2/MoleculeTypesList.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,357 copying bionetgen/bng-mac/Perl2/Observable.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,359 copying bionetgen/bng-mac/Perl2/Param.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,362 copying bionetgen/bng-mac/Perl2/ParamList.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,365 copying bionetgen/bng-mac/Perl2/Population.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,367 copying bionetgen/bng-mac/Perl2/PopulationList.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,369 copying bionetgen/bng-mac/Perl2/RateLaw.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,373 copying bionetgen/bng-mac/Perl2/RefineRule.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,375 copying bionetgen/bng-mac/Perl2/Rxn.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,378 copying bionetgen/bng-mac/Perl2/RxnList.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,381 copying bionetgen/bng-mac/Perl2/RxnRule.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,386 copying bionetgen/bng-mac/Perl2/SBMLMultiAux.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,389 copying bionetgen/bng-mac/Perl2/Species.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,391 copying bionetgen/bng-mac/Perl2/SpeciesGraph.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,397 copying bionetgen/bng-mac/Perl2/SpeciesList.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,400 copying bionetgen/bng-mac/Perl2/XMLReader.pm -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,402 copying bionetgen/bng-mac/Perl2/auto_hpp.pl -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,405 copying bionetgen/bng-mac/Perl2/diff_net.pl -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,408 copying bionetgen/bng-mac/Perl2/sample_vars_2.pl -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,410 copying bionetgen/bng-mac/Perl2/scan_var.pl -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,413 copying bionetgen/bng-mac/Perl2/test_cartesianproduct.pl -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,415 copying bionetgen/bng-mac/Perl2/verify.pl -> build/lib/bionetgen/bng-mac/Perl2 2025-09-18T01:09:16,417 creating build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,418 copying bionetgen/bng-mac/Perl2/Aux2/._MakeBin.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,420 copying bionetgen/bng-mac/Perl2/Aux2/._bnglstat.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,422 copying bionetgen/bng-mac/Perl2/Aux2/._count_blocks.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,424 copying bionetgen/bng-mac/Perl2/Aux2/._count_lines.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,426 copying bionetgen/bng-mac/Perl2/Aux2/._countdown.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,428 copying bionetgen/bng-mac/Perl2/Aux2/._diff_cdat.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,430 copying bionetgen/bng-mac/Perl2/Aux2/._express.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,432 copying bionetgen/bng-mac/Perl2/Aux2/._express_main.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,434 copying bionetgen/bng-mac/Perl2/Aux2/._group_size.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,436 copying bionetgen/bng-mac/Perl2/Aux2/._runBNG.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,439 copying bionetgen/bng-mac/Perl2/Aux2/._test.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,441 copying bionetgen/bng-mac/Perl2/Aux2/._test_compartment.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,443 copying bionetgen/bng-mac/Perl2/Aux2/._test_molorder.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,445 copying bionetgen/bng-mac/Perl2/Aux2/._test_redirect.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,446 copying bionetgen/bng-mac/Perl2/Aux2/._test_sub.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,449 copying bionetgen/bng-mac/Perl2/Aux2/MakeBin.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,451 copying bionetgen/bng-mac/Perl2/Aux2/bnglstat.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,453 copying bionetgen/bng-mac/Perl2/Aux2/count_blocks.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,455 copying bionetgen/bng-mac/Perl2/Aux2/count_lines.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,457 copying bionetgen/bng-mac/Perl2/Aux2/countdown.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,458 copying bionetgen/bng-mac/Perl2/Aux2/diff_cdat.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,461 copying bionetgen/bng-mac/Perl2/Aux2/express.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,463 copying bionetgen/bng-mac/Perl2/Aux2/express_main.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,465 copying bionetgen/bng-mac/Perl2/Aux2/group_size.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,467 copying bionetgen/bng-mac/Perl2/Aux2/runBNG.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,469 copying bionetgen/bng-mac/Perl2/Aux2/test.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,471 copying bionetgen/bng-mac/Perl2/Aux2/test_compartment.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,473 copying bionetgen/bng-mac/Perl2/Aux2/test_molorder.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,475 copying bionetgen/bng-mac/Perl2/Aux2/test_redirect.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,477 copying bionetgen/bng-mac/Perl2/Aux2/test_sub.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:16,479 creating build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:16,480 copying bionetgen/bng-mac/Perl2/Boolean2BNGL/._ABC_example.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:16,482 copying bionetgen/bng-mac/Perl2/Boolean2BNGL/._Boolean2BNGL.pl -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:16,484 copying bionetgen/bng-mac/Perl2/Boolean2BNGL/._Tcell_model_Nov2013_LAH.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:16,486 copying bionetgen/bng-mac/Perl2/Boolean2BNGL/._Tcell_model_Oct2013.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:16,488 copying bionetgen/bng-mac/Perl2/Boolean2BNGL/._Tcell_model_v16.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:16,490 copying bionetgen/bng-mac/Perl2/Boolean2BNGL/ABC_example.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:16,493 copying bionetgen/bng-mac/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:16,495 copying bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:16,497 copying bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:16,499 copying bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:16,502 creating build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,502 copying bionetgen/bng-mac/Perl2/Visualization/._ContactMap.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,505 copying bionetgen/bng-mac/Perl2/Visualization/._GML.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,507 copying bionetgen/bng-mac/Perl2/Visualization/._NetworkGraph.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,509 copying bionetgen/bng-mac/Perl2/Visualization/._ProcessGraph.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,511 copying bionetgen/bng-mac/Perl2/Visualization/._README -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,513 copying bionetgen/bng-mac/Perl2/Visualization/._RINF.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,515 copying bionetgen/bng-mac/Perl2/Visualization/._StructureGraph.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,517 copying bionetgen/bng-mac/Perl2/Visualization/._VisOptParse.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,519 copying bionetgen/bng-mac/Perl2/Visualization/._Viz.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,521 copying bionetgen/bng-mac/Perl2/Visualization/._analyze.pl -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,523 copying bionetgen/bng-mac/Perl2/Visualization/._readGML.pl -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,525 copying bionetgen/bng-mac/Perl2/Visualization/._visualize.pl -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,527 copying bionetgen/bng-mac/Perl2/Visualization/ContactMap.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,529 copying bionetgen/bng-mac/Perl2/Visualization/GML.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,533 copying bionetgen/bng-mac/Perl2/Visualization/NetworkGraph.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,536 copying bionetgen/bng-mac/Perl2/Visualization/ProcessGraph.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,539 copying bionetgen/bng-mac/Perl2/Visualization/README -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,541 copying bionetgen/bng-mac/Perl2/Visualization/RINF.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,543 copying bionetgen/bng-mac/Perl2/Visualization/StructureGraph.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,546 copying bionetgen/bng-mac/Perl2/Visualization/VisOptParse.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,548 copying bionetgen/bng-mac/Perl2/Visualization/Viz.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,552 copying bionetgen/bng-mac/Perl2/Visualization/analyze.pl -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,555 copying bionetgen/bng-mac/Perl2/Visualization/readGML.pl -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,557 copying bionetgen/bng-mac/Perl2/Visualization/visualize.pl -> build/lib/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:16,559 creating build/lib/bionetgen/bng-mac/Perl2/XML 2025-09-18T01:09:16,560 copying bionetgen/bng-mac/Perl2/XML/._TreePP.pm -> build/lib/bionetgen/bng-mac/Perl2/XML 2025-09-18T01:09:16,562 copying bionetgen/bng-mac/Perl2/XML/TreePP.pm -> build/lib/bionetgen/bng-mac/Perl2/XML 2025-09-18T01:09:16,566 creating build/lib/bionetgen/bng-mac/bin 2025-09-18T01:09:16,567 copying bionetgen/bng-mac/bin/NFsim -> build/lib/bionetgen/bng-mac/bin 2025-09-18T01:09:16,623 copying bionetgen/bng-mac/bin/run_network -> build/lib/bionetgen/bng-mac/bin 2025-09-18T01:09:16,717 copying bionetgen/bng-mac/bin/sundials-config -> build/lib/bionetgen/bng-mac/bin 2025-09-18T01:09:16,720 creating build/lib/bionetgen/bng-win 2025-09-18T01:09:16,721 copying bionetgen/bng-win/BNG2.pl -> build/lib/bionetgen/bng-win 2025-09-18T01:09:16,725 copying bionetgen/bng-win/VERSION -> build/lib/bionetgen/bng-win 2025-09-18T01:09:16,727 creating build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,728 copying bionetgen/bng-win/Perl2/._Aux2 -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,731 copying bionetgen/bng-win/Perl2/._BNGAction.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,733 copying bionetgen/bng-win/Perl2/._BNGMessages.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,736 copying bionetgen/bng-win/Perl2/._BNGModel.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,738 copying bionetgen/bng-win/Perl2/._BNGOptions.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,740 copying bionetgen/bng-win/Perl2/._BNGOutput.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,743 copying bionetgen/bng-win/Perl2/._BNGUtils.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,745 copying bionetgen/bng-win/Perl2/._Boolean2BNGL -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,748 copying bionetgen/bng-win/Perl2/._Cache.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,750 copying bionetgen/bng-win/Perl2/._CartesianProduct.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,752 copying bionetgen/bng-win/Perl2/._Compartment.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,755 copying bionetgen/bng-win/Perl2/._CompartmentList.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,757 copying bionetgen/bng-win/Perl2/._Component.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,760 copying bionetgen/bng-win/Perl2/._ComponentType.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,762 copying bionetgen/bng-win/Perl2/._Console.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,765 copying bionetgen/bng-win/Perl2/._EnergyPattern.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,767 copying bionetgen/bng-win/Perl2/._Expression.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,770 copying bionetgen/bng-win/Perl2/._Function.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,772 copying bionetgen/bng-win/Perl2/._HNauty.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,775 copying bionetgen/bng-win/Perl2/._MacroBNG2.pl -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,777 copying bionetgen/bng-win/Perl2/._MacroBNGModel.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,779 copying bionetgen/bng-win/Perl2/._Map.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,782 copying bionetgen/bng-win/Perl2/._ModelWrapper.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,784 copying bionetgen/bng-win/Perl2/._Molecule.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,787 copying bionetgen/bng-win/Perl2/._MoleculeType.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,789 copying bionetgen/bng-win/Perl2/._MoleculeTypesList.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,792 copying bionetgen/bng-win/Perl2/._Observable.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,794 copying bionetgen/bng-win/Perl2/._Param.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,797 copying bionetgen/bng-win/Perl2/._ParamList.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,799 copying bionetgen/bng-win/Perl2/._Population.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,801 copying bionetgen/bng-win/Perl2/._PopulationList.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,804 copying bionetgen/bng-win/Perl2/._RateLaw.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,806 copying bionetgen/bng-win/Perl2/._RefineRule.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,809 copying bionetgen/bng-win/Perl2/._Rxn.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,811 copying bionetgen/bng-win/Perl2/._RxnList.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,813 copying bionetgen/bng-win/Perl2/._RxnRule.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,816 copying bionetgen/bng-win/Perl2/._SBMLMultiAux.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,818 copying bionetgen/bng-win/Perl2/._Species.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,821 copying bionetgen/bng-win/Perl2/._SpeciesGraph.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,823 copying bionetgen/bng-win/Perl2/._SpeciesList.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,826 copying bionetgen/bng-win/Perl2/._Visualization -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,828 copying bionetgen/bng-win/Perl2/._XML -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,830 copying bionetgen/bng-win/Perl2/._XMLReader.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,833 copying bionetgen/bng-win/Perl2/._auto_hpp.pl -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,835 copying bionetgen/bng-win/Perl2/._diff_net.pl -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,838 copying bionetgen/bng-win/Perl2/._sample_vars_2.pl -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,840 copying bionetgen/bng-win/Perl2/._scan_var.pl -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,842 copying bionetgen/bng-win/Perl2/._test_cartesianproduct.pl -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,845 copying bionetgen/bng-win/Perl2/._verify.pl -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,847 copying bionetgen/bng-win/Perl2/BNGAction.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,852 copying bionetgen/bng-win/Perl2/BNGMessages.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,854 copying bionetgen/bng-win/Perl2/BNGModel.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,859 copying bionetgen/bng-win/Perl2/BNGOptions.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,862 copying bionetgen/bng-win/Perl2/BNGOutput.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,868 copying bionetgen/bng-win/Perl2/BNGUtils.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,871 copying bionetgen/bng-win/Perl2/Cache.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,874 copying bionetgen/bng-win/Perl2/CartesianProduct.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,877 copying bionetgen/bng-win/Perl2/Compartment.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,880 copying bionetgen/bng-win/Perl2/CompartmentList.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,883 copying bionetgen/bng-win/Perl2/Component.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,885 copying bionetgen/bng-win/Perl2/ComponentType.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,888 copying bionetgen/bng-win/Perl2/Console.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,890 copying bionetgen/bng-win/Perl2/EnergyPattern.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,893 copying bionetgen/bng-win/Perl2/Expression.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,896 copying bionetgen/bng-win/Perl2/Function.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,899 copying bionetgen/bng-win/Perl2/HNauty.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,902 copying bionetgen/bng-win/Perl2/MacroBNG2.pl -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,904 copying bionetgen/bng-win/Perl2/MacroBNGModel.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,908 copying bionetgen/bng-win/Perl2/Map.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,911 copying bionetgen/bng-win/Perl2/ModelWrapper.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,913 copying bionetgen/bng-win/Perl2/Molecule.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,916 copying bionetgen/bng-win/Perl2/MoleculeType.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,919 copying bionetgen/bng-win/Perl2/MoleculeTypesList.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,922 copying bionetgen/bng-win/Perl2/Observable.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,926 copying bionetgen/bng-win/Perl2/Param.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,929 copying bionetgen/bng-win/Perl2/ParamList.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,933 copying bionetgen/bng-win/Perl2/Population.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,935 copying bionetgen/bng-win/Perl2/PopulationList.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,940 copying bionetgen/bng-win/Perl2/RateLaw.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,944 copying bionetgen/bng-win/Perl2/RefineRule.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,948 copying bionetgen/bng-win/Perl2/Rxn.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,952 copying bionetgen/bng-win/Perl2/RxnList.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,955 copying bionetgen/bng-win/Perl2/RxnRule.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,961 copying bionetgen/bng-win/Perl2/SBMLMultiAux.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,965 copying bionetgen/bng-win/Perl2/Species.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,968 copying bionetgen/bng-win/Perl2/SpeciesGraph.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,975 copying bionetgen/bng-win/Perl2/SpeciesList.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,979 copying bionetgen/bng-win/Perl2/XMLReader.pm -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,981 copying bionetgen/bng-win/Perl2/auto_hpp.pl -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,985 copying bionetgen/bng-win/Perl2/diff_net.pl -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,988 copying bionetgen/bng-win/Perl2/sample_vars_2.pl -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,993 copying bionetgen/bng-win/Perl2/scan_var.pl -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,996 copying bionetgen/bng-win/Perl2/test_cartesianproduct.pl -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:16,999 copying bionetgen/bng-win/Perl2/verify.pl -> build/lib/bionetgen/bng-win/Perl2 2025-09-18T01:09:17,002 creating build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,004 copying bionetgen/bng-win/Perl2/Aux2/._MakeBin.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,007 copying bionetgen/bng-win/Perl2/Aux2/._bnglstat.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,010 copying bionetgen/bng-win/Perl2/Aux2/._count_blocks.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,012 copying bionetgen/bng-win/Perl2/Aux2/._count_lines.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,015 copying bionetgen/bng-win/Perl2/Aux2/._countdown.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,018 copying bionetgen/bng-win/Perl2/Aux2/._diff_cdat.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,020 copying bionetgen/bng-win/Perl2/Aux2/._express.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,023 copying bionetgen/bng-win/Perl2/Aux2/._express_main.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,026 copying bionetgen/bng-win/Perl2/Aux2/._group_size.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,028 copying bionetgen/bng-win/Perl2/Aux2/._runBNG.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,031 copying bionetgen/bng-win/Perl2/Aux2/._test.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,034 copying bionetgen/bng-win/Perl2/Aux2/._test_compartment.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,036 copying bionetgen/bng-win/Perl2/Aux2/._test_molorder.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,038 copying bionetgen/bng-win/Perl2/Aux2/._test_redirect.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,040 copying bionetgen/bng-win/Perl2/Aux2/._test_sub.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,042 copying bionetgen/bng-win/Perl2/Aux2/MakeBin.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,044 copying bionetgen/bng-win/Perl2/Aux2/bnglstat.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,046 copying bionetgen/bng-win/Perl2/Aux2/count_blocks.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,048 copying bionetgen/bng-win/Perl2/Aux2/count_lines.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,051 copying bionetgen/bng-win/Perl2/Aux2/countdown.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,053 copying bionetgen/bng-win/Perl2/Aux2/diff_cdat.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,055 copying bionetgen/bng-win/Perl2/Aux2/express.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,057 copying bionetgen/bng-win/Perl2/Aux2/express_main.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,059 copying bionetgen/bng-win/Perl2/Aux2/group_size.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,061 copying bionetgen/bng-win/Perl2/Aux2/runBNG.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,063 copying bionetgen/bng-win/Perl2/Aux2/test.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,065 copying bionetgen/bng-win/Perl2/Aux2/test_compartment.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,067 copying bionetgen/bng-win/Perl2/Aux2/test_molorder.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,070 copying bionetgen/bng-win/Perl2/Aux2/test_redirect.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,072 copying bionetgen/bng-win/Perl2/Aux2/test_sub.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:17,074 creating build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:17,075 copying bionetgen/bng-win/Perl2/Boolean2BNGL/._ABC_example.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:17,077 copying bionetgen/bng-win/Perl2/Boolean2BNGL/._Boolean2BNGL.pl -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:17,079 copying bionetgen/bng-win/Perl2/Boolean2BNGL/._Tcell_model_Nov2013_LAH.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:17,081 copying bionetgen/bng-win/Perl2/Boolean2BNGL/._Tcell_model_Oct2013.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:17,083 copying bionetgen/bng-win/Perl2/Boolean2BNGL/._Tcell_model_v16.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:17,085 copying bionetgen/bng-win/Perl2/Boolean2BNGL/ABC_example.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:17,087 copying bionetgen/bng-win/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:17,089 copying bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:17,092 copying bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:17,094 copying bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:17,096 creating build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,097 copying bionetgen/bng-win/Perl2/Visualization/._ContactMap.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,099 copying bionetgen/bng-win/Perl2/Visualization/._GML.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,101 copying bionetgen/bng-win/Perl2/Visualization/._NetworkGraph.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,103 copying bionetgen/bng-win/Perl2/Visualization/._ProcessGraph.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,105 copying bionetgen/bng-win/Perl2/Visualization/._README -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,108 copying bionetgen/bng-win/Perl2/Visualization/._RINF.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,111 copying bionetgen/bng-win/Perl2/Visualization/._StructureGraph.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,113 copying bionetgen/bng-win/Perl2/Visualization/._VisOptParse.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,116 copying bionetgen/bng-win/Perl2/Visualization/._Viz.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,119 copying bionetgen/bng-win/Perl2/Visualization/._analyze.pl -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,121 copying bionetgen/bng-win/Perl2/Visualization/._readGML.pl -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,123 copying bionetgen/bng-win/Perl2/Visualization/._visualize.pl -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,125 copying bionetgen/bng-win/Perl2/Visualization/ContactMap.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,127 copying bionetgen/bng-win/Perl2/Visualization/GML.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,131 copying bionetgen/bng-win/Perl2/Visualization/NetworkGraph.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,134 copying bionetgen/bng-win/Perl2/Visualization/ProcessGraph.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,137 copying bionetgen/bng-win/Perl2/Visualization/README -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,139 copying bionetgen/bng-win/Perl2/Visualization/RINF.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,141 copying bionetgen/bng-win/Perl2/Visualization/StructureGraph.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,144 copying bionetgen/bng-win/Perl2/Visualization/VisOptParse.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,146 copying bionetgen/bng-win/Perl2/Visualization/Viz.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,150 copying bionetgen/bng-win/Perl2/Visualization/analyze.pl -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,154 copying bionetgen/bng-win/Perl2/Visualization/readGML.pl -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,156 copying bionetgen/bng-win/Perl2/Visualization/visualize.pl -> build/lib/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:17,158 creating build/lib/bionetgen/bng-win/Perl2/XML 2025-09-18T01:09:17,159 copying bionetgen/bng-win/Perl2/XML/._TreePP.pm -> build/lib/bionetgen/bng-win/Perl2/XML 2025-09-18T01:09:17,162 copying bionetgen/bng-win/Perl2/XML/TreePP.pm -> build/lib/bionetgen/bng-win/Perl2/XML 2025-09-18T01:09:17,165 creating build/lib/bionetgen/bng-win/bin 2025-09-18T01:09:17,166 copying bionetgen/bng-win/bin/NFsim.exe -> build/lib/bionetgen/bng-win/bin 2025-09-18T01:09:17,452 copying bionetgen/bng-win/bin/cyggcc_s-seh-1.dll -> build/lib/bionetgen/bng-win/bin 2025-09-18T01:09:17,458 copying bionetgen/bng-win/bin/cygstdc++-6.dll -> build/lib/bionetgen/bng-win/bin 2025-09-18T01:09:17,585 copying bionetgen/bng-win/bin/cygwin1.dll -> build/lib/bionetgen/bng-win/bin 2025-09-18T01:09:17,823 copying bionetgen/bng-win/bin/cygz.dll -> build/lib/bionetgen/bng-win/bin 2025-09-18T01:09:17,831 copying bionetgen/bng-win/bin/cygzstd-1.dll -> build/lib/bionetgen/bng-win/bin 2025-09-18T01:09:17,915 copying bionetgen/bng-win/bin/run_network.exe -> build/lib/bionetgen/bng-win/bin 2025-09-18T01:09:18,241 copying bionetgen/bng-win/bin/sundials-config -> build/lib/bionetgen/bng-win/bin 2025-09-18T01:09:18,281 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-18T01:09:18,282 !! 2025-09-18T01:09:18,282 ******************************************************************************** 2025-09-18T01:09:18,282 Please avoid running ``setup.py`` directly. 2025-09-18T01:09:18,282 Instead, use pypa/build, pypa/installer or other 2025-09-18T01:09:18,283 standards-based tools. 2025-09-18T01:09:18,283 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-18T01:09:18,283 or your builds will no longer be supported. 2025-09-18T01:09:18,283 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-18T01:09:18,284 ******************************************************************************** 2025-09-18T01:09:18,284 !! 2025-09-18T01:09:18,284 self.initialize_options() 2025-09-18T01:09:18,313 installing to build/bdist.linux-armv7l/wheel 2025-09-18T01:09:18,313 running install 2025-09-18T01:09:18,333 running install_lib 2025-09-18T01:09:18,360 creating build/bdist.linux-armv7l/wheel 2025-09-18T01:09:18,362 creating build/bdist.linux-armv7l/wheel/bionetgen 2025-09-18T01:09:18,364 creating build/bdist.linux-armv7l/wheel/bionetgen/assets 2025-09-18T01:09:18,365 copying build/lib/bionetgen/assets/BNGVERSION -> build/bdist.linux-armv7l/wheel/./bionetgen/assets 2025-09-18T01:09:18,367 copying build/lib/bionetgen/assets/bionetgen-temp.ipynb -> build/bdist.linux-armv7l/wheel/./bionetgen/assets 2025-09-18T01:09:18,370 copying build/lib/bionetgen/assets/bionetgen.ipynb -> build/bdist.linux-armv7l/wheel/./bionetgen/assets 2025-09-18T01:09:18,373 copying build/lib/bionetgen/assets/VERSION -> build/bdist.linux-armv7l/wheel/./bionetgen/assets 2025-09-18T01:09:18,375 copying build/lib/bionetgen/assets/get_version_json.py -> build/bdist.linux-armv7l/wheel/./bionetgen/assets 2025-09-18T01:09:18,378 copying build/lib/bionetgen/assets/ghapi.json -> build/bdist.linux-armv7l/wheel/./bionetgen/assets 2025-09-18T01:09:18,381 creating build/bdist.linux-armv7l/wheel/bionetgen/core 2025-09-18T01:09:18,383 creating build/bdist.linux-armv7l/wheel/bionetgen/core/tools 2025-09-18T01:09:18,385 copying build/lib/bionetgen/core/tools/visualize.py -> build/bdist.linux-armv7l/wheel/./bionetgen/core/tools 2025-09-18T01:09:18,388 copying build/lib/bionetgen/core/tools/result.py -> build/bdist.linux-armv7l/wheel/./bionetgen/core/tools 2025-09-18T01:09:18,390 copying build/lib/bionetgen/core/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./bionetgen/core/tools 2025-09-18T01:09:18,392 copying build/lib/bionetgen/core/tools/cli.py -> build/bdist.linux-armv7l/wheel/./bionetgen/core/tools 2025-09-18T01:09:18,394 copying build/lib/bionetgen/core/tools/info.py -> build/bdist.linux-armv7l/wheel/./bionetgen/core/tools 2025-09-18T01:09:18,396 copying build/lib/bionetgen/core/tools/plot.py -> build/bdist.linux-armv7l/wheel/./bionetgen/core/tools 2025-09-18T01:09:18,398 copying build/lib/bionetgen/core/tools/gdiff.py -> build/bdist.linux-armv7l/wheel/./bionetgen/core/tools 2025-09-18T01:09:18,401 copying build/lib/bionetgen/core/notebook.py -> build/bdist.linux-armv7l/wheel/./bionetgen/core 2025-09-18T01:09:18,402 copying build/lib/bionetgen/core/__init__.py -> build/bdist.linux-armv7l/wheel/./bionetgen/core 2025-09-18T01:09:18,404 copying build/lib/bionetgen/core/main.py -> build/bdist.linux-armv7l/wheel/./bionetgen/core 2025-09-18T01:09:18,406 copying build/lib/bionetgen/core/exc.py -> build/bdist.linux-armv7l/wheel/./bionetgen/core 2025-09-18T01:09:18,408 copying build/lib/bionetgen/core/version.py -> build/bdist.linux-armv7l/wheel/./bionetgen/core 2025-09-18T01:09:18,410 creating build/bdist.linux-armv7l/wheel/bionetgen/core/utils 2025-09-18T01:09:18,411 copying build/lib/bionetgen/core/utils/utils.py -> build/bdist.linux-armv7l/wheel/./bionetgen/core/utils 2025-09-18T01:09:18,413 copying build/lib/bionetgen/core/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./bionetgen/core/utils 2025-09-18T01:09:18,415 copying build/lib/bionetgen/core/utils/logging.py -> build/bdist.linux-armv7l/wheel/./bionetgen/core/utils 2025-09-18T01:09:18,417 copying build/lib/bionetgen/core/defaults.py -> build/bdist.linux-armv7l/wheel/./bionetgen/core 2025-09-18T01:09:18,420 creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer 2025-09-18T01:09:18,421 copying build/lib/bionetgen/atomizer/atomizeTool.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer 2025-09-18T01:09:18,424 creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer 2025-09-18T01:09:18,425 copying build/lib/bionetgen/atomizer/atomizer/atomizerUtils.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/atomizer 2025-09-18T01:09:18,427 copying build/lib/bionetgen/atomizer/atomizer/moleculeCreation.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/atomizer 2025-09-18T01:09:18,431 copying build/lib/bionetgen/atomizer/atomizer/__init__.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/atomizer 2025-09-18T01:09:18,433 copying build/lib/bionetgen/atomizer/atomizer/detectOntology.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/atomizer 2025-09-18T01:09:18,435 copying build/lib/bionetgen/atomizer/atomizer/atomizationAux.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/atomizer 2025-09-18T01:09:18,437 copying build/lib/bionetgen/atomizer/atomizer/resolveSCT.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/atomizer 2025-09-18T01:09:18,441 copying build/lib/bionetgen/atomizer/atomizer/analyzeRDF.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/atomizer 2025-09-18T01:09:18,443 copying build/lib/bionetgen/atomizer/atomizer/analyzeSBML.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/atomizer 2025-09-18T01:09:18,450 copying build/lib/bionetgen/atomizer/sbmlTranslator.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer 2025-09-18T01:09:18,454 copying build/lib/bionetgen/atomizer/bngModel.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer 2025-09-18T01:09:18,460 creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/merging 2025-09-18T01:09:18,461 copying build/lib/bionetgen/atomizer/merging/__init__.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/merging 2025-09-18T01:09:18,465 copying build/lib/bionetgen/atomizer/merging/namingDatabase.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/merging 2025-09-18T01:09:18,469 copying build/lib/bionetgen/atomizer/merging/compareNamingConventions.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/merging 2025-09-18T01:09:18,473 copying build/lib/bionetgen/atomizer/__init__.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer 2025-09-18T01:09:18,477 creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier 2025-09-18T01:09:18,478 copying build/lib/bionetgen/atomizer/rulifier/componentGroups.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/rulifier 2025-09-18T01:09:18,482 copying build/lib/bionetgen/atomizer/rulifier/arial10.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/rulifier 2025-09-18T01:09:18,484 copying build/lib/bionetgen/atomizer/rulifier/stateTransitionDiagram.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/rulifier 2025-09-18T01:09:18,487 copying build/lib/bionetgen/atomizer/rulifier/stdgraph.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/rulifier 2025-09-18T01:09:18,490 copying build/lib/bionetgen/atomizer/rulifier/parameterExtraction.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/rulifier 2025-09-18T01:09:18,493 copying build/lib/bionetgen/atomizer/rulifier/__init__.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/rulifier 2025-09-18T01:09:18,495 copying build/lib/bionetgen/atomizer/rulifier/compareModels.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/rulifier 2025-09-18T01:09:18,498 copying build/lib/bionetgen/atomizer/rulifier/postAnalysis.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/rulifier 2025-09-18T01:09:18,501 copying build/lib/bionetgen/atomizer/sbml2bngl.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer 2025-09-18T01:09:18,507 copying build/lib/bionetgen/atomizer/contextAnalyzer.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer 2025-09-18T01:09:18,511 creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/writer 2025-09-18T01:09:18,512 copying build/lib/bionetgen/atomizer/writer/__init__.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/writer 2025-09-18T01:09:18,515 copying build/lib/bionetgen/atomizer/writer/bnglWriter.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/writer 2025-09-18T01:09:18,519 copying build/lib/bionetgen/atomizer/libsbml2bngl.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer 2025-09-18T01:09:18,524 copying build/lib/bionetgen/atomizer/sbml2json.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer 2025-09-18T01:09:18,528 copying build/lib/bionetgen/atomizer/biogrid.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer 2025-09-18T01:09:18,531 copying build/lib/bionetgen/atomizer/contactMap.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer 2025-09-18T01:09:18,534 copying build/lib/bionetgen/atomizer/parseAnnotation.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer 2025-09-18T01:09:18,537 creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils 2025-09-18T01:09:18,539 copying build/lib/bionetgen/atomizer/utils/extractAtomic.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/utils 2025-09-18T01:09:18,542 copying build/lib/bionetgen/atomizer/utils/pathwaycommons.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/utils 2025-09-18T01:09:18,546 copying build/lib/bionetgen/atomizer/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/utils 2025-09-18T01:09:18,548 copying build/lib/bionetgen/atomizer/utils/structures.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/utils 2025-09-18T01:09:18,552 copying build/lib/bionetgen/atomizer/utils/consoleCommands.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/utils 2025-09-18T01:09:18,554 copying build/lib/bionetgen/atomizer/utils/annotationDeletion.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/utils 2025-09-18T01:09:18,558 copying build/lib/bionetgen/atomizer/utils/annotationResolver.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/utils 2025-09-18T01:09:18,561 copying build/lib/bionetgen/atomizer/utils/util.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/utils 2025-09-18T01:09:18,564 copying build/lib/bionetgen/atomizer/utils/nameNormalizer.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/utils 2025-09-18T01:09:18,568 copying build/lib/bionetgen/atomizer/utils/modelComparison.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/utils 2025-09-18T01:09:18,571 copying build/lib/bionetgen/atomizer/utils/annotationExtender.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/utils 2025-09-18T01:09:18,575 copying build/lib/bionetgen/atomizer/utils/smallStructures.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/utils 2025-09-18T01:09:18,579 copying build/lib/bionetgen/atomizer/utils/readBNGXML.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/utils 2025-09-18T01:09:18,582 copying build/lib/bionetgen/atomizer/utils/annotationExtractor.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/utils 2025-09-18T01:09:18,586 copying build/lib/bionetgen/atomizer/utils/annotationComparison.py -> build/bdist.linux-armv7l/wheel/./bionetgen/atomizer/utils 2025-09-18T01:09:18,589 copying build/lib/bionetgen/__init__.py -> build/bdist.linux-armv7l/wheel/./bionetgen 2025-09-18T01:09:18,592 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux 2025-09-18T01:09:18,594 copying build/lib/bionetgen/bng-linux/VERSION -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux 2025-09-18T01:09:18,598 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/bin 2025-09-18T01:09:18,600 copying build/lib/bionetgen/bng-linux/bin/NFsim -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/bin 2025-09-18T01:09:18,648 copying build/lib/bionetgen/bng-linux/bin/sundials-config -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/bin 2025-09-18T01:09:18,650 copying build/lib/bionetgen/bng-linux/bin/run_network -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/bin 2025-09-18T01:09:18,683 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,684 copying build/lib/bionetgen/bng-linux/Perl2/ComponentType.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,686 copying build/lib/bionetgen/bng-linux/Perl2/._RxnRule.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,688 copying build/lib/bionetgen/bng-linux/Perl2/._XML -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,691 copying build/lib/bionetgen/bng-linux/Perl2/EnergyPattern.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,693 copying build/lib/bionetgen/bng-linux/Perl2/RefineRule.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,696 copying build/lib/bionetgen/bng-linux/Perl2/._Boolean2BNGL -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,698 copying build/lib/bionetgen/bng-linux/Perl2/MoleculeType.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,700 copying build/lib/bionetgen/bng-linux/Perl2/SBMLMultiAux.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,703 copying build/lib/bionetgen/bng-linux/Perl2/._BNGUtils.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,704 copying build/lib/bionetgen/bng-linux/Perl2/._Function.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,706 copying build/lib/bionetgen/bng-linux/Perl2/._Molecule.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,707 copying build/lib/bionetgen/bng-linux/Perl2/HNauty.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,710 copying build/lib/bionetgen/bng-linux/Perl2/._Expression.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,712 copying build/lib/bionetgen/bng-linux/Perl2/Map.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,714 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:18,715 copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:18,718 copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/._Tcell_model_Oct2013.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:18,719 copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/._Tcell_model_Nov2013_LAH.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:18,721 copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/ABC_example.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:18,723 copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:18,725 copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/._ABC_example.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:18,726 copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:18,728 copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/._Tcell_model_v16.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:18,730 copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/._Boolean2BNGL.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:18,731 copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Boolean2BNGL 2025-09-18T01:09:18,733 copying build/lib/bionetgen/bng-linux/Perl2/._Param.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,735 copying build/lib/bionetgen/bng-linux/Perl2/._MoleculeTypesList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,737 copying build/lib/bionetgen/bng-linux/Perl2/Species.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,739 copying build/lib/bionetgen/bng-linux/Perl2/._Compartment.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,741 copying build/lib/bionetgen/bng-linux/Perl2/Param.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,743 copying build/lib/bionetgen/bng-linux/Perl2/._RateLaw.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,745 copying build/lib/bionetgen/bng-linux/Perl2/scan_var.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,747 copying build/lib/bionetgen/bng-linux/Perl2/CompartmentList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,749 copying build/lib/bionetgen/bng-linux/Perl2/SpeciesGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,754 copying build/lib/bionetgen/bng-linux/Perl2/Rxn.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,756 copying build/lib/bionetgen/bng-linux/Perl2/._HNauty.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,758 copying build/lib/bionetgen/bng-linux/Perl2/._SpeciesGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,759 copying build/lib/bionetgen/bng-linux/Perl2/._Observable.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,761 copying build/lib/bionetgen/bng-linux/Perl2/BNGModel.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,765 copying build/lib/bionetgen/bng-linux/Perl2/MacroBNGModel.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,769 copying build/lib/bionetgen/bng-linux/Perl2/ParamList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,772 copying build/lib/bionetgen/bng-linux/Perl2/RateLaw.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,775 copying build/lib/bionetgen/bng-linux/Perl2/._BNGModel.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,778 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,779 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/ProcessGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,782 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/README -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,785 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/Viz.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,789 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/._ContactMap.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,790 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/._ProcessGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,792 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/._RINF.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,795 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/._Viz.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,796 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/VisOptParse.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,798 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/StructureGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,800 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/._README -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,802 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/._StructureGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,804 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/._readGML.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,806 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/._visualize.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,809 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/._GML.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,811 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/GML.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,815 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/RINF.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,817 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/._NetworkGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,818 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/visualize.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,821 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/analyze.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,823 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/._VisOptParse.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,825 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/NetworkGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,827 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/._analyze.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,829 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/ContactMap.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,831 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/readGML.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Visualization 2025-09-18T01:09:18,833 copying build/lib/bionetgen/bng-linux/Perl2/._PopulationList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,834 copying build/lib/bionetgen/bng-linux/Perl2/._BNGMessages.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,836 copying build/lib/bionetgen/bng-linux/Perl2/auto_hpp.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,838 copying build/lib/bionetgen/bng-linux/Perl2/ModelWrapper.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,840 copying build/lib/bionetgen/bng-linux/Perl2/._RxnList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,841 copying build/lib/bionetgen/bng-linux/Perl2/._Rxn.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,843 copying build/lib/bionetgen/bng-linux/Perl2/._sample_vars_2.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,845 copying build/lib/bionetgen/bng-linux/Perl2/._RefineRule.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,847 copying build/lib/bionetgen/bng-linux/Perl2/._verify.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,848 copying build/lib/bionetgen/bng-linux/Perl2/._Aux2 -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,850 copying build/lib/bionetgen/bng-linux/Perl2/._CartesianProduct.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,851 copying build/lib/bionetgen/bng-linux/Perl2/Component.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,854 copying build/lib/bionetgen/bng-linux/Perl2/BNGUtils.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,856 copying build/lib/bionetgen/bng-linux/Perl2/PopulationList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,858 copying build/lib/bionetgen/bng-linux/Perl2/._diff_net.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,859 copying build/lib/bionetgen/bng-linux/Perl2/CartesianProduct.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,862 copying build/lib/bionetgen/bng-linux/Perl2/._MoleculeType.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,863 copying build/lib/bionetgen/bng-linux/Perl2/._Population.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,865 copying build/lib/bionetgen/bng-linux/Perl2/Function.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,867 copying build/lib/bionetgen/bng-linux/Perl2/._Component.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,870 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,871 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test_molorder.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,873 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test_compartment.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,875 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/._runBNG.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,877 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/._test_sub.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,878 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/bnglstat.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,880 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/MakeBin.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,882 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/._bnglstat.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,884 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,885 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/._express.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,887 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/group_size.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,889 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/countdown.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,891 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/._test_redirect.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,893 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/._test.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,894 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/diff_cdat.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,896 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/._test_molorder.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,898 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/._count_blocks.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,900 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/count_lines.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,902 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/._MakeBin.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,904 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/._test_compartment.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,905 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/runBNG.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,907 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/count_blocks.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,909 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test_sub.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,911 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/._express_main.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,913 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/express.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,914 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/express_main.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,916 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/._count_lines.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,918 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/._group_size.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,919 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test_redirect.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,921 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/._countdown.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,923 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/._diff_cdat.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/Aux2 2025-09-18T01:09:18,925 copying build/lib/bionetgen/bng-linux/Perl2/._Console.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,926 copying build/lib/bionetgen/bng-linux/Perl2/test_cartesianproduct.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,928 copying build/lib/bionetgen/bng-linux/Perl2/MacroBNG2.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,930 copying build/lib/bionetgen/bng-linux/Perl2/._MacroBNGModel.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,932 copying build/lib/bionetgen/bng-linux/Perl2/RxnRule.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,937 copying build/lib/bionetgen/bng-linux/Perl2/._Species.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,938 copying build/lib/bionetgen/bng-linux/Perl2/Expression.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,942 copying build/lib/bionetgen/bng-linux/Perl2/verify.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,944 copying build/lib/bionetgen/bng-linux/Perl2/._ParamList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,946 copying build/lib/bionetgen/bng-linux/Perl2/._SpeciesList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,948 copying build/lib/bionetgen/bng-linux/Perl2/._BNGOptions.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,949 copying build/lib/bionetgen/bng-linux/Perl2/RxnList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,952 copying build/lib/bionetgen/bng-linux/Perl2/._Cache.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,953 copying build/lib/bionetgen/bng-linux/Perl2/Population.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,955 copying build/lib/bionetgen/bng-linux/Perl2/._ComponentType.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,957 copying build/lib/bionetgen/bng-linux/Perl2/Cache.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,958 copying build/lib/bionetgen/bng-linux/Perl2/._ModelWrapper.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,960 copying build/lib/bionetgen/bng-linux/Perl2/._SBMLMultiAux.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,962 copying build/lib/bionetgen/bng-linux/Perl2/BNGOptions.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,964 copying build/lib/bionetgen/bng-linux/Perl2/._Visualization -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,965 copying build/lib/bionetgen/bng-linux/Perl2/._test_cartesianproduct.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,967 copying build/lib/bionetgen/bng-linux/Perl2/Molecule.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,969 copying build/lib/bionetgen/bng-linux/Perl2/XMLReader.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,971 copying build/lib/bionetgen/bng-linux/Perl2/._CompartmentList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,973 copying build/lib/bionetgen/bng-linux/Perl2/._Map.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,974 copying build/lib/bionetgen/bng-linux/Perl2/._auto_hpp.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,976 copying build/lib/bionetgen/bng-linux/Perl2/._scan_var.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,978 copying build/lib/bionetgen/bng-linux/Perl2/BNGMessages.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,979 copying build/lib/bionetgen/bng-linux/Perl2/BNGAction.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,983 copying build/lib/bionetgen/bng-linux/Perl2/Console.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,985 copying build/lib/bionetgen/bng-linux/Perl2/diff_net.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,987 copying build/lib/bionetgen/bng-linux/Perl2/Observable.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,990 copying build/lib/bionetgen/bng-linux/Perl2/SpeciesList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,992 copying build/lib/bionetgen/bng-linux/Perl2/Compartment.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,995 copying build/lib/bionetgen/bng-linux/Perl2/._EnergyPattern.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,996 copying build/lib/bionetgen/bng-linux/Perl2/._MacroBNG2.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:18,998 copying build/lib/bionetgen/bng-linux/Perl2/._BNGOutput.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:19,000 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/XML 2025-09-18T01:09:19,001 copying build/lib/bionetgen/bng-linux/Perl2/XML/._TreePP.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/XML 2025-09-18T01:09:19,003 copying build/lib/bionetgen/bng-linux/Perl2/XML/TreePP.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2/XML 2025-09-18T01:09:19,006 copying build/lib/bionetgen/bng-linux/Perl2/._BNGAction.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:19,008 copying build/lib/bionetgen/bng-linux/Perl2/sample_vars_2.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:19,010 copying build/lib/bionetgen/bng-linux/Perl2/._XMLReader.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:19,012 copying build/lib/bionetgen/bng-linux/Perl2/MoleculeTypesList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:19,014 copying build/lib/bionetgen/bng-linux/Perl2/BNGOutput.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux/Perl2 2025-09-18T01:09:19,019 copying build/lib/bionetgen/bng-linux/BNG2.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-linux 2025-09-18T01:09:19,022 creating build/bdist.linux-armv7l/wheel/bionetgen/network 2025-09-18T01:09:19,023 copying build/lib/bionetgen/network/blocks.py -> build/bdist.linux-armv7l/wheel/./bionetgen/network 2025-09-18T01:09:19,026 copying build/lib/bionetgen/network/structs.py -> build/bdist.linux-armv7l/wheel/./bionetgen/network 2025-09-18T01:09:19,028 copying build/lib/bionetgen/network/__init__.py -> build/bdist.linux-armv7l/wheel/./bionetgen/network 2025-09-18T01:09:19,029 copying build/lib/bionetgen/network/networkparser.py -> build/bdist.linux-armv7l/wheel/./bionetgen/network 2025-09-18T01:09:19,031 copying build/lib/bionetgen/network/network.py -> build/bdist.linux-armv7l/wheel/./bionetgen/network 2025-09-18T01:09:19,034 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win 2025-09-18T01:09:19,035 copying build/lib/bionetgen/bng-win/VERSION -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win 2025-09-18T01:09:19,038 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin 2025-09-18T01:09:19,039 copying build/lib/bionetgen/bng-win/bin/run_network.exe -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/bin 2025-09-18T01:09:19,262 copying build/lib/bionetgen/bng-win/bin/cygwin1.dll -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/bin 2025-09-18T01:09:19,312 copying build/lib/bionetgen/bng-win/bin/cyggcc_s-seh-1.dll -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/bin 2025-09-18T01:09:19,315 copying build/lib/bionetgen/bng-win/bin/cygz.dll -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/bin 2025-09-18T01:09:19,319 copying build/lib/bionetgen/bng-win/bin/sundials-config -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/bin 2025-09-18T01:09:19,343 copying build/lib/bionetgen/bng-win/bin/cygstdc++-6.dll -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/bin 2025-09-18T01:09:19,396 copying build/lib/bionetgen/bng-win/bin/cygzstd-1.dll -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/bin 2025-09-18T01:09:19,444 copying build/lib/bionetgen/bng-win/bin/NFsim.exe -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/bin 2025-09-18T01:09:19,511 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2 2025-09-18T01:09:19,512 copying build/lib/bionetgen/bng-win/Perl2/ComponentType.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,515 copying build/lib/bionetgen/bng-win/Perl2/._RxnRule.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,516 copying build/lib/bionetgen/bng-win/Perl2/._XML -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,518 copying build/lib/bionetgen/bng-win/Perl2/EnergyPattern.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,520 copying build/lib/bionetgen/bng-win/Perl2/RefineRule.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,523 copying build/lib/bionetgen/bng-win/Perl2/._Boolean2BNGL -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,524 copying build/lib/bionetgen/bng-win/Perl2/MoleculeType.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,527 copying build/lib/bionetgen/bng-win/Perl2/SBMLMultiAux.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,529 copying build/lib/bionetgen/bng-win/Perl2/._BNGUtils.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,531 copying build/lib/bionetgen/bng-win/Perl2/._Function.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,533 copying build/lib/bionetgen/bng-win/Perl2/._Molecule.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,534 copying build/lib/bionetgen/bng-win/Perl2/HNauty.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,537 copying build/lib/bionetgen/bng-win/Perl2/._Expression.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,539 copying build/lib/bionetgen/bng-win/Perl2/Map.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,542 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:19,543 copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:19,545 copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/._Tcell_model_Oct2013.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:19,547 copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/._Tcell_model_Nov2013_LAH.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:19,548 copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/ABC_example.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:19,550 copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:19,552 copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/._ABC_example.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:19,554 copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:19,555 copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/._Tcell_model_v16.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:19,557 copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/._Boolean2BNGL.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:19,559 copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Boolean2BNGL 2025-09-18T01:09:19,560 copying build/lib/bionetgen/bng-win/Perl2/._Param.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,562 copying build/lib/bionetgen/bng-win/Perl2/._MoleculeTypesList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,564 copying build/lib/bionetgen/bng-win/Perl2/Species.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,566 copying build/lib/bionetgen/bng-win/Perl2/._Compartment.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,567 copying build/lib/bionetgen/bng-win/Perl2/Param.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,569 copying build/lib/bionetgen/bng-win/Perl2/._RateLaw.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,571 copying build/lib/bionetgen/bng-win/Perl2/scan_var.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,573 copying build/lib/bionetgen/bng-win/Perl2/CompartmentList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,575 copying build/lib/bionetgen/bng-win/Perl2/SpeciesGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,579 copying build/lib/bionetgen/bng-win/Perl2/Rxn.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,581 copying build/lib/bionetgen/bng-win/Perl2/._HNauty.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,583 copying build/lib/bionetgen/bng-win/Perl2/._SpeciesGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,585 copying build/lib/bionetgen/bng-win/Perl2/._Observable.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,586 copying build/lib/bionetgen/bng-win/Perl2/BNGModel.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,591 copying build/lib/bionetgen/bng-win/Perl2/MacroBNGModel.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,595 copying build/lib/bionetgen/bng-win/Perl2/ParamList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,598 copying build/lib/bionetgen/bng-win/Perl2/RateLaw.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,601 copying build/lib/bionetgen/bng-win/Perl2/._BNGModel.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,604 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,606 copying build/lib/bionetgen/bng-win/Perl2/Visualization/ProcessGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,609 copying build/lib/bionetgen/bng-win/Perl2/Visualization/README -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,610 copying build/lib/bionetgen/bng-win/Perl2/Visualization/Viz.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,614 copying build/lib/bionetgen/bng-win/Perl2/Visualization/._ContactMap.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,615 copying build/lib/bionetgen/bng-win/Perl2/Visualization/._ProcessGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,617 copying build/lib/bionetgen/bng-win/Perl2/Visualization/._RINF.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,619 copying build/lib/bionetgen/bng-win/Perl2/Visualization/._Viz.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,621 copying build/lib/bionetgen/bng-win/Perl2/Visualization/VisOptParse.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,623 copying build/lib/bionetgen/bng-win/Perl2/Visualization/StructureGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,625 copying build/lib/bionetgen/bng-win/Perl2/Visualization/._README -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,627 copying build/lib/bionetgen/bng-win/Perl2/Visualization/._StructureGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,628 copying build/lib/bionetgen/bng-win/Perl2/Visualization/._readGML.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,630 copying build/lib/bionetgen/bng-win/Perl2/Visualization/._visualize.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,632 copying build/lib/bionetgen/bng-win/Perl2/Visualization/._GML.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,634 copying build/lib/bionetgen/bng-win/Perl2/Visualization/GML.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,637 copying build/lib/bionetgen/bng-win/Perl2/Visualization/RINF.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,639 copying build/lib/bionetgen/bng-win/Perl2/Visualization/._NetworkGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,640 copying build/lib/bionetgen/bng-win/Perl2/Visualization/visualize.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,643 copying build/lib/bionetgen/bng-win/Perl2/Visualization/analyze.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,645 copying build/lib/bionetgen/bng-win/Perl2/Visualization/._VisOptParse.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,647 copying build/lib/bionetgen/bng-win/Perl2/Visualization/NetworkGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,649 copying build/lib/bionetgen/bng-win/Perl2/Visualization/._analyze.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,651 copying build/lib/bionetgen/bng-win/Perl2/Visualization/ContactMap.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,653 copying build/lib/bionetgen/bng-win/Perl2/Visualization/readGML.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Visualization 2025-09-18T01:09:19,654 copying build/lib/bionetgen/bng-win/Perl2/._PopulationList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,656 copying build/lib/bionetgen/bng-win/Perl2/._BNGMessages.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,658 copying build/lib/bionetgen/bng-win/Perl2/auto_hpp.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,660 copying build/lib/bionetgen/bng-win/Perl2/ModelWrapper.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,662 copying build/lib/bionetgen/bng-win/Perl2/._RxnList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,663 copying build/lib/bionetgen/bng-win/Perl2/._Rxn.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,665 copying build/lib/bionetgen/bng-win/Perl2/._sample_vars_2.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,666 copying build/lib/bionetgen/bng-win/Perl2/._RefineRule.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,668 copying build/lib/bionetgen/bng-win/Perl2/._verify.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,670 copying build/lib/bionetgen/bng-win/Perl2/._Aux2 -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,671 copying build/lib/bionetgen/bng-win/Perl2/._CartesianProduct.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,673 copying build/lib/bionetgen/bng-win/Perl2/Component.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,676 copying build/lib/bionetgen/bng-win/Perl2/BNGUtils.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,678 copying build/lib/bionetgen/bng-win/Perl2/PopulationList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,680 copying build/lib/bionetgen/bng-win/Perl2/._diff_net.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,681 copying build/lib/bionetgen/bng-win/Perl2/CartesianProduct.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,683 copying build/lib/bionetgen/bng-win/Perl2/._MoleculeType.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,685 copying build/lib/bionetgen/bng-win/Perl2/._Population.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,687 copying build/lib/bionetgen/bng-win/Perl2/Function.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,689 copying build/lib/bionetgen/bng-win/Perl2/._Component.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,692 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,693 copying build/lib/bionetgen/bng-win/Perl2/Aux2/test_molorder.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,695 copying build/lib/bionetgen/bng-win/Perl2/Aux2/test_compartment.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,696 copying build/lib/bionetgen/bng-win/Perl2/Aux2/._runBNG.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,698 copying build/lib/bionetgen/bng-win/Perl2/Aux2/._test_sub.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,700 copying build/lib/bionetgen/bng-win/Perl2/Aux2/bnglstat.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,701 copying build/lib/bionetgen/bng-win/Perl2/Aux2/MakeBin.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,703 copying build/lib/bionetgen/bng-win/Perl2/Aux2/._bnglstat.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,705 copying build/lib/bionetgen/bng-win/Perl2/Aux2/test.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,707 copying build/lib/bionetgen/bng-win/Perl2/Aux2/._express.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,708 copying build/lib/bionetgen/bng-win/Perl2/Aux2/group_size.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,710 copying build/lib/bionetgen/bng-win/Perl2/Aux2/countdown.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,712 copying build/lib/bionetgen/bng-win/Perl2/Aux2/._test_redirect.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,713 copying build/lib/bionetgen/bng-win/Perl2/Aux2/._test.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,715 copying build/lib/bionetgen/bng-win/Perl2/Aux2/diff_cdat.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,717 copying build/lib/bionetgen/bng-win/Perl2/Aux2/._test_molorder.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,719 copying build/lib/bionetgen/bng-win/Perl2/Aux2/._count_blocks.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,720 copying build/lib/bionetgen/bng-win/Perl2/Aux2/count_lines.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,722 copying build/lib/bionetgen/bng-win/Perl2/Aux2/._MakeBin.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,724 copying build/lib/bionetgen/bng-win/Perl2/Aux2/._test_compartment.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,725 copying build/lib/bionetgen/bng-win/Perl2/Aux2/runBNG.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,727 copying build/lib/bionetgen/bng-win/Perl2/Aux2/count_blocks.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,729 copying build/lib/bionetgen/bng-win/Perl2/Aux2/test_sub.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,731 copying build/lib/bionetgen/bng-win/Perl2/Aux2/._express_main.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,732 copying build/lib/bionetgen/bng-win/Perl2/Aux2/express.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,734 copying build/lib/bionetgen/bng-win/Perl2/Aux2/express_main.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,736 copying build/lib/bionetgen/bng-win/Perl2/Aux2/._count_lines.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,737 copying build/lib/bionetgen/bng-win/Perl2/Aux2/._group_size.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,739 copying build/lib/bionetgen/bng-win/Perl2/Aux2/test_redirect.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,741 copying build/lib/bionetgen/bng-win/Perl2/Aux2/._countdown.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,742 copying build/lib/bionetgen/bng-win/Perl2/Aux2/._diff_cdat.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/Aux2 2025-09-18T01:09:19,744 copying build/lib/bionetgen/bng-win/Perl2/._Console.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,746 copying build/lib/bionetgen/bng-win/Perl2/test_cartesianproduct.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,748 copying build/lib/bionetgen/bng-win/Perl2/MacroBNG2.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,749 copying build/lib/bionetgen/bng-win/Perl2/._MacroBNGModel.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,751 copying build/lib/bionetgen/bng-win/Perl2/RxnRule.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,755 copying build/lib/bionetgen/bng-win/Perl2/._Species.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,757 copying build/lib/bionetgen/bng-win/Perl2/Expression.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,760 copying build/lib/bionetgen/bng-win/Perl2/verify.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,762 copying build/lib/bionetgen/bng-win/Perl2/._ParamList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,764 copying build/lib/bionetgen/bng-win/Perl2/._SpeciesList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,766 copying build/lib/bionetgen/bng-win/Perl2/._BNGOptions.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,767 copying build/lib/bionetgen/bng-win/Perl2/RxnList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,770 copying build/lib/bionetgen/bng-win/Perl2/._Cache.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,771 copying build/lib/bionetgen/bng-win/Perl2/Population.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,773 copying build/lib/bionetgen/bng-win/Perl2/._ComponentType.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,775 copying build/lib/bionetgen/bng-win/Perl2/Cache.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,776 copying build/lib/bionetgen/bng-win/Perl2/._ModelWrapper.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,778 copying build/lib/bionetgen/bng-win/Perl2/._SBMLMultiAux.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,780 copying build/lib/bionetgen/bng-win/Perl2/BNGOptions.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,782 copying build/lib/bionetgen/bng-win/Perl2/._Visualization -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,783 copying build/lib/bionetgen/bng-win/Perl2/._test_cartesianproduct.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,785 copying build/lib/bionetgen/bng-win/Perl2/Molecule.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,788 copying build/lib/bionetgen/bng-win/Perl2/XMLReader.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,789 copying build/lib/bionetgen/bng-win/Perl2/._CompartmentList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,791 copying build/lib/bionetgen/bng-win/Perl2/._Map.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,793 copying build/lib/bionetgen/bng-win/Perl2/._auto_hpp.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,794 copying build/lib/bionetgen/bng-win/Perl2/._scan_var.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,796 copying build/lib/bionetgen/bng-win/Perl2/BNGMessages.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,798 copying build/lib/bionetgen/bng-win/Perl2/BNGAction.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,801 copying build/lib/bionetgen/bng-win/Perl2/Console.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,804 copying build/lib/bionetgen/bng-win/Perl2/diff_net.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,806 copying build/lib/bionetgen/bng-win/Perl2/Observable.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,809 copying build/lib/bionetgen/bng-win/Perl2/SpeciesList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,811 copying build/lib/bionetgen/bng-win/Perl2/Compartment.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,814 copying build/lib/bionetgen/bng-win/Perl2/._EnergyPattern.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,815 copying build/lib/bionetgen/bng-win/Perl2/._MacroBNG2.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,817 copying build/lib/bionetgen/bng-win/Perl2/._BNGOutput.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,819 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/XML 2025-09-18T01:09:19,820 copying build/lib/bionetgen/bng-win/Perl2/XML/._TreePP.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/XML 2025-09-18T01:09:19,822 copying build/lib/bionetgen/bng-win/Perl2/XML/TreePP.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2/XML 2025-09-18T01:09:19,826 copying build/lib/bionetgen/bng-win/Perl2/._BNGAction.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,827 copying build/lib/bionetgen/bng-win/Perl2/sample_vars_2.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,830 copying build/lib/bionetgen/bng-win/Perl2/._XMLReader.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,831 copying build/lib/bionetgen/bng-win/Perl2/MoleculeTypesList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,834 copying build/lib/bionetgen/bng-win/Perl2/BNGOutput.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win/Perl2 2025-09-18T01:09:19,841 copying build/lib/bionetgen/bng-win/BNG2.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-win 2025-09-18T01:09:19,843 copying build/lib/bionetgen/main.py -> build/bdist.linux-armv7l/wheel/./bionetgen 2025-09-18T01:09:19,846 creating build/bdist.linux-armv7l/wheel/bionetgen/simulator 2025-09-18T01:09:19,847 copying build/lib/bionetgen/simulator/__init__.py -> build/bdist.linux-armv7l/wheel/./bionetgen/simulator 2025-09-18T01:09:19,849 copying build/lib/bionetgen/simulator/librrsimulator.py -> build/bdist.linux-armv7l/wheel/./bionetgen/simulator 2025-09-18T01:09:19,851 copying build/lib/bionetgen/simulator/simulators.py -> build/bdist.linux-armv7l/wheel/./bionetgen/simulator 2025-09-18T01:09:19,853 copying build/lib/bionetgen/simulator/bngsimulator.py -> build/bdist.linux-armv7l/wheel/./bionetgen/simulator 2025-09-18T01:09:19,855 copying build/lib/bionetgen/simulator/csimulator.py -> build/bdist.linux-armv7l/wheel/./bionetgen/simulator 2025-09-18T01:09:19,857 creating build/bdist.linux-armv7l/wheel/bionetgen/modelapi 2025-09-18T01:09:19,858 copying build/lib/bionetgen/modelapi/rulemod.py -> build/bdist.linux-armv7l/wheel/./bionetgen/modelapi 2025-09-18T01:09:19,860 copying build/lib/bionetgen/modelapi/blocks.py -> build/bdist.linux-armv7l/wheel/./bionetgen/modelapi 2025-09-18T01:09:19,863 copying build/lib/bionetgen/modelapi/bngfile.py -> build/bdist.linux-armv7l/wheel/./bionetgen/modelapi 2025-09-18T01:09:19,866 copying build/lib/bionetgen/modelapi/pattern.py -> build/bdist.linux-armv7l/wheel/./bionetgen/modelapi 2025-09-18T01:09:19,868 copying build/lib/bionetgen/modelapi/runner.py -> build/bdist.linux-armv7l/wheel/./bionetgen/modelapi 2025-09-18T01:09:19,870 copying build/lib/bionetgen/modelapi/structs.py -> build/bdist.linux-armv7l/wheel/./bionetgen/modelapi 2025-09-18T01:09:19,872 copying build/lib/bionetgen/modelapi/__init__.py -> build/bdist.linux-armv7l/wheel/./bionetgen/modelapi 2025-09-18T01:09:19,874 copying build/lib/bionetgen/modelapi/xmlparsers.py -> build/bdist.linux-armv7l/wheel/./bionetgen/modelapi 2025-09-18T01:09:19,877 copying build/lib/bionetgen/modelapi/pattern_reader.py -> build/bdist.linux-armv7l/wheel/./bionetgen/modelapi 2025-09-18T01:09:19,879 copying build/lib/bionetgen/modelapi/bngparser.py -> build/bdist.linux-armv7l/wheel/./bionetgen/modelapi 2025-09-18T01:09:19,881 copying build/lib/bionetgen/modelapi/model.py -> build/bdist.linux-armv7l/wheel/./bionetgen/modelapi 2025-09-18T01:09:19,884 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac 2025-09-18T01:09:19,885 copying build/lib/bionetgen/bng-mac/VERSION -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac 2025-09-18T01:09:19,887 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/bin 2025-09-18T01:09:19,888 copying build/lib/bionetgen/bng-mac/bin/NFsim -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/bin 2025-09-18T01:09:19,939 copying build/lib/bionetgen/bng-mac/bin/sundials-config -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/bin 2025-09-18T01:09:19,941 copying build/lib/bionetgen/bng-mac/bin/run_network -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/bin 2025-09-18T01:09:20,031 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,032 copying build/lib/bionetgen/bng-mac/Perl2/ComponentType.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,035 copying build/lib/bionetgen/bng-mac/Perl2/._RxnRule.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,036 copying build/lib/bionetgen/bng-mac/Perl2/._XML -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,038 copying build/lib/bionetgen/bng-mac/Perl2/EnergyPattern.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,040 copying build/lib/bionetgen/bng-mac/Perl2/RefineRule.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,043 copying build/lib/bionetgen/bng-mac/Perl2/._Boolean2BNGL -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,044 copying build/lib/bionetgen/bng-mac/Perl2/MoleculeType.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,047 copying build/lib/bionetgen/bng-mac/Perl2/SBMLMultiAux.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,049 copying build/lib/bionetgen/bng-mac/Perl2/._BNGUtils.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,051 copying build/lib/bionetgen/bng-mac/Perl2/._Function.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,053 copying build/lib/bionetgen/bng-mac/Perl2/._Molecule.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,054 copying build/lib/bionetgen/bng-mac/Perl2/HNauty.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,057 copying build/lib/bionetgen/bng-mac/Perl2/._Expression.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,059 copying build/lib/bionetgen/bng-mac/Perl2/Map.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,061 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:20,062 copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:20,065 copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/._Tcell_model_Oct2013.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:20,066 copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/._Tcell_model_Nov2013_LAH.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:20,068 copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/ABC_example.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:20,070 copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:20,072 copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/._ABC_example.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:20,073 copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:20,075 copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/._Tcell_model_v16.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:20,077 copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/._Boolean2BNGL.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:20,078 copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Boolean2BNGL 2025-09-18T01:09:20,080 copying build/lib/bionetgen/bng-mac/Perl2/._Param.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,082 copying build/lib/bionetgen/bng-mac/Perl2/._MoleculeTypesList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,083 copying build/lib/bionetgen/bng-mac/Perl2/Species.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,085 copying build/lib/bionetgen/bng-mac/Perl2/._Compartment.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,087 copying build/lib/bionetgen/bng-mac/Perl2/Param.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,089 copying build/lib/bionetgen/bng-mac/Perl2/._RateLaw.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,091 copying build/lib/bionetgen/bng-mac/Perl2/scan_var.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,093 copying build/lib/bionetgen/bng-mac/Perl2/CompartmentList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,095 copying build/lib/bionetgen/bng-mac/Perl2/SpeciesGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,100 copying build/lib/bionetgen/bng-mac/Perl2/Rxn.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,102 copying build/lib/bionetgen/bng-mac/Perl2/._HNauty.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,103 copying build/lib/bionetgen/bng-mac/Perl2/._SpeciesGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,105 copying build/lib/bionetgen/bng-mac/Perl2/._Observable.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,107 copying build/lib/bionetgen/bng-mac/Perl2/BNGModel.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,111 copying build/lib/bionetgen/bng-mac/Perl2/MacroBNGModel.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,114 copying build/lib/bionetgen/bng-mac/Perl2/ParamList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,117 copying build/lib/bionetgen/bng-mac/Perl2/RateLaw.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,120 copying build/lib/bionetgen/bng-mac/Perl2/._BNGModel.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,123 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,124 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/ProcessGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,126 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/README -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,128 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/Viz.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,131 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/._ContactMap.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,133 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/._ProcessGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,134 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/._RINF.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,136 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/._Viz.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,138 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/VisOptParse.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,139 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/StructureGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,142 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/._README -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,143 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/._StructureGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,145 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/._readGML.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,147 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/._visualize.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,148 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/._GML.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,150 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/GML.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,154 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/RINF.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,156 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/._NetworkGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,157 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/visualize.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,159 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/analyze.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,162 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/._VisOptParse.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,164 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/NetworkGraph.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,166 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/._analyze.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,168 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/ContactMap.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,170 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/readGML.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Visualization 2025-09-18T01:09:20,171 copying build/lib/bionetgen/bng-mac/Perl2/._PopulationList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,173 copying build/lib/bionetgen/bng-mac/Perl2/._BNGMessages.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,175 copying build/lib/bionetgen/bng-mac/Perl2/auto_hpp.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,177 copying build/lib/bionetgen/bng-mac/Perl2/ModelWrapper.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,179 copying build/lib/bionetgen/bng-mac/Perl2/._RxnList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,180 copying build/lib/bionetgen/bng-mac/Perl2/._Rxn.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,182 copying build/lib/bionetgen/bng-mac/Perl2/._sample_vars_2.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,184 copying build/lib/bionetgen/bng-mac/Perl2/._RefineRule.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,185 copying build/lib/bionetgen/bng-mac/Perl2/._verify.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,187 copying build/lib/bionetgen/bng-mac/Perl2/._Aux2 -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,188 copying build/lib/bionetgen/bng-mac/Perl2/._CartesianProduct.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,190 copying build/lib/bionetgen/bng-mac/Perl2/Component.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,192 copying build/lib/bionetgen/bng-mac/Perl2/BNGUtils.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,194 copying build/lib/bionetgen/bng-mac/Perl2/PopulationList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,196 copying build/lib/bionetgen/bng-mac/Perl2/._diff_net.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,198 copying build/lib/bionetgen/bng-mac/Perl2/CartesianProduct.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,200 copying build/lib/bionetgen/bng-mac/Perl2/._MoleculeType.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,202 copying build/lib/bionetgen/bng-mac/Perl2/._Population.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,203 copying build/lib/bionetgen/bng-mac/Perl2/Function.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,206 copying build/lib/bionetgen/bng-mac/Perl2/._Component.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,208 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,209 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test_molorder.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,211 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test_compartment.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,213 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/._runBNG.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,214 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/._test_sub.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,216 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/bnglstat.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,218 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/MakeBin.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,219 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/._bnglstat.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,221 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,223 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/._express.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,224 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/group_size.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,226 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/countdown.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,228 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/._test_redirect.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,229 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/._test.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,231 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/diff_cdat.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,233 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/._test_molorder.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,235 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/._count_blocks.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,236 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/count_lines.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,238 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/._MakeBin.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,240 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/._test_compartment.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,241 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/runBNG.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,243 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/count_blocks.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,245 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test_sub.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,247 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/._express_main.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,248 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/express.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,250 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/express_main.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,252 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/._count_lines.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,254 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/._group_size.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,255 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test_redirect.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,257 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/._countdown.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,258 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/._diff_cdat.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/Aux2 2025-09-18T01:09:20,260 copying build/lib/bionetgen/bng-mac/Perl2/._Console.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,262 copying build/lib/bionetgen/bng-mac/Perl2/test_cartesianproduct.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,263 copying build/lib/bionetgen/bng-mac/Perl2/MacroBNG2.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,265 copying build/lib/bionetgen/bng-mac/Perl2/._MacroBNGModel.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,266 copying build/lib/bionetgen/bng-mac/Perl2/RxnRule.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,272 copying build/lib/bionetgen/bng-mac/Perl2/._Species.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,274 copying build/lib/bionetgen/bng-mac/Perl2/Expression.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,280 copying build/lib/bionetgen/bng-mac/Perl2/verify.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,285 copying build/lib/bionetgen/bng-mac/Perl2/._ParamList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,286 copying build/lib/bionetgen/bng-mac/Perl2/._SpeciesList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,288 copying build/lib/bionetgen/bng-mac/Perl2/._BNGOptions.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,289 copying build/lib/bionetgen/bng-mac/Perl2/RxnList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,292 copying build/lib/bionetgen/bng-mac/Perl2/._Cache.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,293 copying build/lib/bionetgen/bng-mac/Perl2/Population.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,295 copying build/lib/bionetgen/bng-mac/Perl2/._ComponentType.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,297 copying build/lib/bionetgen/bng-mac/Perl2/Cache.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,299 copying build/lib/bionetgen/bng-mac/Perl2/._ModelWrapper.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,301 copying build/lib/bionetgen/bng-mac/Perl2/._SBMLMultiAux.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,302 copying build/lib/bionetgen/bng-mac/Perl2/BNGOptions.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,304 copying build/lib/bionetgen/bng-mac/Perl2/._Visualization -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,306 copying build/lib/bionetgen/bng-mac/Perl2/._test_cartesianproduct.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,307 copying build/lib/bionetgen/bng-mac/Perl2/Molecule.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,310 copying build/lib/bionetgen/bng-mac/Perl2/XMLReader.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,312 copying build/lib/bionetgen/bng-mac/Perl2/._CompartmentList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,313 copying build/lib/bionetgen/bng-mac/Perl2/._Map.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,315 copying build/lib/bionetgen/bng-mac/Perl2/._auto_hpp.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,317 copying build/lib/bionetgen/bng-mac/Perl2/._scan_var.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,318 copying build/lib/bionetgen/bng-mac/Perl2/BNGMessages.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,320 copying build/lib/bionetgen/bng-mac/Perl2/BNGAction.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,324 copying build/lib/bionetgen/bng-mac/Perl2/Console.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,326 copying build/lib/bionetgen/bng-mac/Perl2/diff_net.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,329 copying build/lib/bionetgen/bng-mac/Perl2/Observable.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,331 copying build/lib/bionetgen/bng-mac/Perl2/SpeciesList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,334 copying build/lib/bionetgen/bng-mac/Perl2/Compartment.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,336 copying build/lib/bionetgen/bng-mac/Perl2/._EnergyPattern.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,338 copying build/lib/bionetgen/bng-mac/Perl2/._MacroBNG2.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,339 copying build/lib/bionetgen/bng-mac/Perl2/._BNGOutput.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,342 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/XML 2025-09-18T01:09:20,343 copying build/lib/bionetgen/bng-mac/Perl2/XML/._TreePP.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/XML 2025-09-18T01:09:20,345 copying build/lib/bionetgen/bng-mac/Perl2/XML/TreePP.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2/XML 2025-09-18T01:09:20,347 copying build/lib/bionetgen/bng-mac/Perl2/._BNGAction.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,349 copying build/lib/bionetgen/bng-mac/Perl2/sample_vars_2.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,352 copying build/lib/bionetgen/bng-mac/Perl2/._XMLReader.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,353 copying build/lib/bionetgen/bng-mac/Perl2/MoleculeTypesList.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,355 copying build/lib/bionetgen/bng-mac/Perl2/BNGOutput.pm -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac/Perl2 2025-09-18T01:09:20,361 copying build/lib/bionetgen/bng-mac/BNG2.pl -> build/bdist.linux-armv7l/wheel/./bionetgen/bng-mac 2025-09-18T01:09:20,363 running install_egg_info 2025-09-18T01:09:20,393 Copying bionetgen.egg-info to build/bdist.linux-armv7l/wheel/./bionetgen-0.8.6-py3.9.egg-info 2025-09-18T01:09:20,407 running install_scripts 2025-09-18T01:09:20,419 creating build/bdist.linux-armv7l/wheel/bionetgen-0.8.6.dist-info/WHEEL 2025-09-18T01:09:20,421 creating '/tmp/pip-wheel-ryi3aud4/bionetgen-0.8.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-18T01:09:20,423 adding 'bionetgen/__init__.py' 2025-09-18T01:09:20,426 adding 'bionetgen/main.py' 2025-09-18T01:09:20,428 adding 'bionetgen/assets/BNGVERSION' 2025-09-18T01:09:20,429 adding 'bionetgen/assets/VERSION' 2025-09-18T01:09:20,431 adding 'bionetgen/assets/bionetgen-temp.ipynb' 2025-09-18T01:09:20,434 adding 'bionetgen/assets/bionetgen.ipynb' 2025-09-18T01:09:20,435 adding 'bionetgen/assets/get_version_json.py' 2025-09-18T01:09:20,437 adding 'bionetgen/assets/ghapi.json' 2025-09-18T01:09:20,439 adding 'bionetgen/atomizer/__init__.py' 2025-09-18T01:09:20,440 adding 'bionetgen/atomizer/atomizeTool.py' 2025-09-18T01:09:20,442 adding 'bionetgen/atomizer/biogrid.py' 2025-09-18T01:09:20,449 adding 'bionetgen/atomizer/bngModel.py' 2025-09-18T01:09:20,451 adding 'bionetgen/atomizer/contactMap.py' 2025-09-18T01:09:20,454 adding 'bionetgen/atomizer/contextAnalyzer.py' 2025-09-18T01:09:20,463 adding 'bionetgen/atomizer/libsbml2bngl.py' 2025-09-18T01:09:20,465 adding 'bionetgen/atomizer/parseAnnotation.py' 2025-09-18T01:09:20,480 adding 'bionetgen/atomizer/sbml2bngl.py' 2025-09-18T01:09:20,483 adding 'bionetgen/atomizer/sbml2json.py' 2025-09-18T01:09:20,485 adding 'bionetgen/atomizer/sbmlTranslator.py' 2025-09-18T01:09:20,487 adding 'bionetgen/atomizer/atomizer/__init__.py' 2025-09-18T01:09:20,488 adding 'bionetgen/atomizer/atomizer/analyzeRDF.py' 2025-09-18T01:09:20,499 adding 'bionetgen/atomizer/atomizer/analyzeSBML.py' 2025-09-18T01:09:20,501 adding 'bionetgen/atomizer/atomizer/atomizationAux.py' 2025-09-18T01:09:20,502 adding 'bionetgen/atomizer/atomizer/atomizerUtils.py' 2025-09-18T01:09:20,504 adding 'bionetgen/atomizer/atomizer/detectOntology.py' 2025-09-18T01:09:20,510 adding 'bionetgen/atomizer/atomizer/moleculeCreation.py' 2025-09-18T01:09:20,519 adding 'bionetgen/atomizer/atomizer/resolveSCT.py' 2025-09-18T01:09:20,521 adding 'bionetgen/atomizer/merging/__init__.py' 2025-09-18T01:09:20,522 adding 'bionetgen/atomizer/merging/compareNamingConventions.py' 2025-09-18T01:09:20,525 adding 'bionetgen/atomizer/merging/namingDatabase.py' 2025-09-18T01:09:20,526 adding 'bionetgen/atomizer/rulifier/__init__.py' 2025-09-18T01:09:20,528 adding 'bionetgen/atomizer/rulifier/arial10.py' 2025-09-18T01:09:20,530 adding 'bionetgen/atomizer/rulifier/compareModels.py' 2025-09-18T01:09:20,533 adding 'bionetgen/atomizer/rulifier/componentGroups.py' 2025-09-18T01:09:20,535 adding 'bionetgen/atomizer/rulifier/parameterExtraction.py' 2025-09-18T01:09:20,538 adding 'bionetgen/atomizer/rulifier/postAnalysis.py' 2025-09-18T01:09:20,540 adding 'bionetgen/atomizer/rulifier/stateTransitionDiagram.py' 2025-09-18T01:09:20,542 adding 'bionetgen/atomizer/rulifier/stdgraph.py' 2025-09-18T01:09:20,544 adding 'bionetgen/atomizer/utils/__init__.py' 2025-09-18T01:09:20,546 adding 'bionetgen/atomizer/utils/annotationComparison.py' 2025-09-18T01:09:20,548 adding 'bionetgen/atomizer/utils/annotationDeletion.py' 2025-09-18T01:09:20,551 adding 'bionetgen/atomizer/utils/annotationExtender.py' 2025-09-18T01:09:20,553 adding 'bionetgen/atomizer/utils/annotationExtractor.py' 2025-09-18T01:09:20,554 adding 'bionetgen/atomizer/utils/annotationResolver.py' 2025-09-18T01:09:20,555 adding 'bionetgen/atomizer/utils/consoleCommands.py' 2025-09-18T01:09:20,557 adding 'bionetgen/atomizer/utils/extractAtomic.py' 2025-09-18T01:09:20,558 adding 'bionetgen/atomizer/utils/modelComparison.py' 2025-09-18T01:09:20,560 adding 'bionetgen/atomizer/utils/nameNormalizer.py' 2025-09-18T01:09:20,562 adding 'bionetgen/atomizer/utils/pathwaycommons.py' 2025-09-18T01:09:20,564 adding 'bionetgen/atomizer/utils/readBNGXML.py' 2025-09-18T01:09:20,567 adding 'bionetgen/atomizer/utils/smallStructures.py' 2025-09-18T01:09:20,570 adding 'bionetgen/atomizer/utils/structures.py' 2025-09-18T01:09:20,572 adding 'bionetgen/atomizer/utils/util.py' 2025-09-18T01:09:20,574 adding 'bionetgen/atomizer/writer/__init__.py' 2025-09-18T01:09:20,576 adding 'bionetgen/atomizer/writer/bnglWriter.py' 2025-09-18T01:09:20,579 adding 'bionetgen/bng-linux/BNG2.pl' 2025-09-18T01:09:20,580 adding 'bionetgen/bng-linux/VERSION' 2025-09-18T01:09:20,583 adding 'bionetgen/bng-linux/Perl2/._Aux2' 2025-09-18T01:09:20,584 adding 'bionetgen/bng-linux/Perl2/._BNGAction.pm' 2025-09-18T01:09:20,585 adding 'bionetgen/bng-linux/Perl2/._BNGMessages.pm' 2025-09-18T01:09:20,586 adding 'bionetgen/bng-linux/Perl2/._BNGModel.pm' 2025-09-18T01:09:20,587 adding 'bionetgen/bng-linux/Perl2/._BNGOptions.pm' 2025-09-18T01:09:20,588 adding 'bionetgen/bng-linux/Perl2/._BNGOutput.pm' 2025-09-18T01:09:20,590 adding 'bionetgen/bng-linux/Perl2/._BNGUtils.pm' 2025-09-18T01:09:20,591 adding 'bionetgen/bng-linux/Perl2/._Boolean2BNGL' 2025-09-18T01:09:20,592 adding 'bionetgen/bng-linux/Perl2/._Cache.pm' 2025-09-18T01:09:20,593 adding 'bionetgen/bng-linux/Perl2/._CartesianProduct.pm' 2025-09-18T01:09:20,594 adding 'bionetgen/bng-linux/Perl2/._Compartment.pm' 2025-09-18T01:09:20,595 adding 'bionetgen/bng-linux/Perl2/._CompartmentList.pm' 2025-09-18T01:09:20,596 adding 'bionetgen/bng-linux/Perl2/._Component.pm' 2025-09-18T01:09:20,598 adding 'bionetgen/bng-linux/Perl2/._ComponentType.pm' 2025-09-18T01:09:20,599 adding 'bionetgen/bng-linux/Perl2/._Console.pm' 2025-09-18T01:09:20,600 adding 'bionetgen/bng-linux/Perl2/._EnergyPattern.pm' 2025-09-18T01:09:20,601 adding 'bionetgen/bng-linux/Perl2/._Expression.pm' 2025-09-18T01:09:20,602 adding 'bionetgen/bng-linux/Perl2/._Function.pm' 2025-09-18T01:09:20,603 adding 'bionetgen/bng-linux/Perl2/._HNauty.pm' 2025-09-18T01:09:20,604 adding 'bionetgen/bng-linux/Perl2/._MacroBNG2.pl' 2025-09-18T01:09:20,605 adding 'bionetgen/bng-linux/Perl2/._MacroBNGModel.pm' 2025-09-18T01:09:20,607 adding 'bionetgen/bng-linux/Perl2/._Map.pm' 2025-09-18T01:09:20,608 adding 'bionetgen/bng-linux/Perl2/._ModelWrapper.pm' 2025-09-18T01:09:20,609 adding 'bionetgen/bng-linux/Perl2/._Molecule.pm' 2025-09-18T01:09:20,610 adding 'bionetgen/bng-linux/Perl2/._MoleculeType.pm' 2025-09-18T01:09:20,611 adding 'bionetgen/bng-linux/Perl2/._MoleculeTypesList.pm' 2025-09-18T01:09:20,612 adding 'bionetgen/bng-linux/Perl2/._Observable.pm' 2025-09-18T01:09:20,613 adding 'bionetgen/bng-linux/Perl2/._Param.pm' 2025-09-18T01:09:20,614 adding 'bionetgen/bng-linux/Perl2/._ParamList.pm' 2025-09-18T01:09:20,616 adding 'bionetgen/bng-linux/Perl2/._Population.pm' 2025-09-18T01:09:20,617 adding 'bionetgen/bng-linux/Perl2/._PopulationList.pm' 2025-09-18T01:09:20,618 adding 'bionetgen/bng-linux/Perl2/._RateLaw.pm' 2025-09-18T01:09:20,619 adding 'bionetgen/bng-linux/Perl2/._RefineRule.pm' 2025-09-18T01:09:20,620 adding 'bionetgen/bng-linux/Perl2/._Rxn.pm' 2025-09-18T01:09:20,621 adding 'bionetgen/bng-linux/Perl2/._RxnList.pm' 2025-09-18T01:09:20,623 adding 'bionetgen/bng-linux/Perl2/._RxnRule.pm' 2025-09-18T01:09:20,624 adding 'bionetgen/bng-linux/Perl2/._SBMLMultiAux.pm' 2025-09-18T01:09:20,625 adding 'bionetgen/bng-linux/Perl2/._Species.pm' 2025-09-18T01:09:20,626 adding 'bionetgen/bng-linux/Perl2/._SpeciesGraph.pm' 2025-09-18T01:09:20,627 adding 'bionetgen/bng-linux/Perl2/._SpeciesList.pm' 2025-09-18T01:09:20,628 adding 'bionetgen/bng-linux/Perl2/._Visualization' 2025-09-18T01:09:20,629 adding 'bionetgen/bng-linux/Perl2/._XML' 2025-09-18T01:09:20,630 adding 'bionetgen/bng-linux/Perl2/._XMLReader.pm' 2025-09-18T01:09:20,632 adding 'bionetgen/bng-linux/Perl2/._auto_hpp.pl' 2025-09-18T01:09:20,633 adding 'bionetgen/bng-linux/Perl2/._diff_net.pl' 2025-09-18T01:09:20,634 adding 'bionetgen/bng-linux/Perl2/._sample_vars_2.pl' 2025-09-18T01:09:20,635 adding 'bionetgen/bng-linux/Perl2/._scan_var.pl' 2025-09-18T01:09:20,636 adding 'bionetgen/bng-linux/Perl2/._test_cartesianproduct.pl' 2025-09-18T01:09:20,637 adding 'bionetgen/bng-linux/Perl2/._verify.pl' 2025-09-18T01:09:20,647 adding 'bionetgen/bng-linux/Perl2/BNGAction.pm' 2025-09-18T01:09:20,648 adding 'bionetgen/bng-linux/Perl2/BNGMessages.pm' 2025-09-18T01:09:20,658 adding 'bionetgen/bng-linux/Perl2/BNGModel.pm' 2025-09-18T01:09:20,660 adding 'bionetgen/bng-linux/Perl2/BNGOptions.pm' 2025-09-18T01:09:20,675 adding 'bionetgen/bng-linux/Perl2/BNGOutput.pm' 2025-09-18T01:09:20,678 adding 'bionetgen/bng-linux/Perl2/BNGUtils.pm' 2025-09-18T01:09:20,679 adding 'bionetgen/bng-linux/Perl2/Cache.pm' 2025-09-18T01:09:20,681 adding 'bionetgen/bng-linux/Perl2/CartesianProduct.pm' 2025-09-18T01:09:20,683 adding 'bionetgen/bng-linux/Perl2/Compartment.pm' 2025-09-18T01:09:20,685 adding 'bionetgen/bng-linux/Perl2/CompartmentList.pm' 2025-09-18T01:09:20,688 adding 'bionetgen/bng-linux/Perl2/Component.pm' 2025-09-18T01:09:20,690 adding 'bionetgen/bng-linux/Perl2/ComponentType.pm' 2025-09-18T01:09:20,691 adding 'bionetgen/bng-linux/Perl2/Console.pm' 2025-09-18T01:09:20,693 adding 'bionetgen/bng-linux/Perl2/EnergyPattern.pm' 2025-09-18T01:09:20,701 adding 'bionetgen/bng-linux/Perl2/Expression.pm' 2025-09-18T01:09:20,704 adding 'bionetgen/bng-linux/Perl2/Function.pm' 2025-09-18T01:09:20,708 adding 'bionetgen/bng-linux/Perl2/HNauty.pm' 2025-09-18T01:09:20,709 adding 'bionetgen/bng-linux/Perl2/MacroBNG2.pl' 2025-09-18T01:09:20,719 adding 'bionetgen/bng-linux/Perl2/MacroBNGModel.pm' 2025-09-18T01:09:20,722 adding 'bionetgen/bng-linux/Perl2/Map.pm' 2025-09-18T01:09:20,723 adding 'bionetgen/bng-linux/Perl2/ModelWrapper.pm' 2025-09-18T01:09:20,726 adding 'bionetgen/bng-linux/Perl2/Molecule.pm' 2025-09-18T01:09:20,728 adding 'bionetgen/bng-linux/Perl2/MoleculeType.pm' 2025-09-18T01:09:20,730 adding 'bionetgen/bng-linux/Perl2/MoleculeTypesList.pm' 2025-09-18T01:09:20,733 adding 'bionetgen/bng-linux/Perl2/Observable.pm' 2025-09-18T01:09:20,734 adding 'bionetgen/bng-linux/Perl2/Param.pm' 2025-09-18T01:09:20,738 adding 'bionetgen/bng-linux/Perl2/ParamList.pm' 2025-09-18T01:09:20,739 adding 'bionetgen/bng-linux/Perl2/Population.pm' 2025-09-18T01:09:20,741 adding 'bionetgen/bng-linux/Perl2/PopulationList.pm' 2025-09-18T01:09:20,746 adding 'bionetgen/bng-linux/Perl2/RateLaw.pm' 2025-09-18T01:09:20,749 adding 'bionetgen/bng-linux/Perl2/RefineRule.pm' 2025-09-18T01:09:20,751 adding 'bionetgen/bng-linux/Perl2/Rxn.pm' 2025-09-18T01:09:20,754 adding 'bionetgen/bng-linux/Perl2/RxnList.pm' 2025-09-18T01:09:20,772 adding 'bionetgen/bng-linux/Perl2/RxnRule.pm' 2025-09-18T01:09:20,775 adding 'bionetgen/bng-linux/Perl2/SBMLMultiAux.pm' 2025-09-18T01:09:20,776 adding 'bionetgen/bng-linux/Perl2/Species.pm' 2025-09-18T01:09:20,790 adding 'bionetgen/bng-linux/Perl2/SpeciesGraph.pm' 2025-09-18T01:09:20,794 adding 'bionetgen/bng-linux/Perl2/SpeciesList.pm' 2025-09-18T01:09:20,795 adding 'bionetgen/bng-linux/Perl2/XMLReader.pm' 2025-09-18T01:09:20,797 adding 'bionetgen/bng-linux/Perl2/auto_hpp.pl' 2025-09-18T01:09:20,799 adding 'bionetgen/bng-linux/Perl2/diff_net.pl' 2025-09-18T01:09:20,802 adding 'bionetgen/bng-linux/Perl2/sample_vars_2.pl' 2025-09-18T01:09:20,804 adding 'bionetgen/bng-linux/Perl2/scan_var.pl' 2025-09-18T01:09:20,805 adding 'bionetgen/bng-linux/Perl2/test_cartesianproduct.pl' 2025-09-18T01:09:20,807 adding 'bionetgen/bng-linux/Perl2/verify.pl' 2025-09-18T01:09:20,809 adding 'bionetgen/bng-linux/Perl2/Aux2/._MakeBin.pl' 2025-09-18T01:09:20,810 adding 'bionetgen/bng-linux/Perl2/Aux2/._bnglstat.pl' 2025-09-18T01:09:20,811 adding 'bionetgen/bng-linux/Perl2/Aux2/._count_blocks.pl' 2025-09-18T01:09:20,812 adding 'bionetgen/bng-linux/Perl2/Aux2/._count_lines.pl' 2025-09-18T01:09:20,814 adding 'bionetgen/bng-linux/Perl2/Aux2/._countdown.pl' 2025-09-18T01:09:20,815 adding 'bionetgen/bng-linux/Perl2/Aux2/._diff_cdat.pl' 2025-09-18T01:09:20,816 adding 'bionetgen/bng-linux/Perl2/Aux2/._express.pl' 2025-09-18T01:09:20,817 adding 'bionetgen/bng-linux/Perl2/Aux2/._express_main.pl' 2025-09-18T01:09:20,818 adding 'bionetgen/bng-linux/Perl2/Aux2/._group_size.pl' 2025-09-18T01:09:20,819 adding 'bionetgen/bng-linux/Perl2/Aux2/._runBNG.pl' 2025-09-18T01:09:20,820 adding 'bionetgen/bng-linux/Perl2/Aux2/._test.pl' 2025-09-18T01:09:20,822 adding 'bionetgen/bng-linux/Perl2/Aux2/._test_compartment.pl' 2025-09-18T01:09:20,823 adding 'bionetgen/bng-linux/Perl2/Aux2/._test_molorder.pl' 2025-09-18T01:09:20,824 adding 'bionetgen/bng-linux/Perl2/Aux2/._test_redirect.pl' 2025-09-18T01:09:20,825 adding 'bionetgen/bng-linux/Perl2/Aux2/._test_sub.pl' 2025-09-18T01:09:20,826 adding 'bionetgen/bng-linux/Perl2/Aux2/MakeBin.pl' 2025-09-18T01:09:20,827 adding 'bionetgen/bng-linux/Perl2/Aux2/bnglstat.pl' 2025-09-18T01:09:20,829 adding 'bionetgen/bng-linux/Perl2/Aux2/count_blocks.pl' 2025-09-18T01:09:20,830 adding 'bionetgen/bng-linux/Perl2/Aux2/count_lines.pl' 2025-09-18T01:09:20,831 adding 'bionetgen/bng-linux/Perl2/Aux2/countdown.pl' 2025-09-18T01:09:20,832 adding 'bionetgen/bng-linux/Perl2/Aux2/diff_cdat.pl' 2025-09-18T01:09:20,834 adding 'bionetgen/bng-linux/Perl2/Aux2/express.pl' 2025-09-18T01:09:20,835 adding 'bionetgen/bng-linux/Perl2/Aux2/express_main.pl' 2025-09-18T01:09:20,836 adding 'bionetgen/bng-linux/Perl2/Aux2/group_size.pl' 2025-09-18T01:09:20,838 adding 'bionetgen/bng-linux/Perl2/Aux2/runBNG.pl' 2025-09-18T01:09:20,839 adding 'bionetgen/bng-linux/Perl2/Aux2/test.pl' 2025-09-18T01:09:20,840 adding 'bionetgen/bng-linux/Perl2/Aux2/test_compartment.pl' 2025-09-18T01:09:20,841 adding 'bionetgen/bng-linux/Perl2/Aux2/test_molorder.pl' 2025-09-18T01:09:20,843 adding 'bionetgen/bng-linux/Perl2/Aux2/test_redirect.pl' 2025-09-18T01:09:20,844 adding 'bionetgen/bng-linux/Perl2/Aux2/test_sub.pl' 2025-09-18T01:09:20,846 adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/._ABC_example.txt' 2025-09-18T01:09:20,847 adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/._Boolean2BNGL.pl' 2025-09-18T01:09:20,848 adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/._Tcell_model_Nov2013_LAH.txt' 2025-09-18T01:09:20,849 adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/._Tcell_model_Oct2013.txt' 2025-09-18T01:09:20,850 adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/._Tcell_model_v16.txt' 2025-09-18T01:09:20,852 adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/ABC_example.txt' 2025-09-18T01:09:20,853 adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/Boolean2BNGL.pl' 2025-09-18T01:09:20,854 adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt' 2025-09-18T01:09:20,856 adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt' 2025-09-18T01:09:20,857 adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_v16.txt' 2025-09-18T01:09:20,859 adding 'bionetgen/bng-linux/Perl2/Visualization/._ContactMap.pm' 2025-09-18T01:09:20,860 adding 'bionetgen/bng-linux/Perl2/Visualization/._GML.pm' 2025-09-18T01:09:20,861 adding 'bionetgen/bng-linux/Perl2/Visualization/._NetworkGraph.pm' 2025-09-18T01:09:20,863 adding 'bionetgen/bng-linux/Perl2/Visualization/._ProcessGraph.pm' 2025-09-18T01:09:20,864 adding 'bionetgen/bng-linux/Perl2/Visualization/._README' 2025-09-18T01:09:20,865 adding 'bionetgen/bng-linux/Perl2/Visualization/._RINF.pm' 2025-09-18T01:09:20,866 adding 'bionetgen/bng-linux/Perl2/Visualization/._StructureGraph.pm' 2025-09-18T01:09:20,867 adding 'bionetgen/bng-linux/Perl2/Visualization/._VisOptParse.pm' 2025-09-18T01:09:20,868 adding 'bionetgen/bng-linux/Perl2/Visualization/._Viz.pm' 2025-09-18T01:09:20,869 adding 'bionetgen/bng-linux/Perl2/Visualization/._analyze.pl' 2025-09-18T01:09:20,871 adding 'bionetgen/bng-linux/Perl2/Visualization/._readGML.pl' 2025-09-18T01:09:20,872 adding 'bionetgen/bng-linux/Perl2/Visualization/._visualize.pl' 2025-09-18T01:09:20,873 adding 'bionetgen/bng-linux/Perl2/Visualization/ContactMap.pm' 2025-09-18T01:09:20,879 adding 'bionetgen/bng-linux/Perl2/Visualization/GML.pm' 2025-09-18T01:09:20,883 adding 'bionetgen/bng-linux/Perl2/Visualization/NetworkGraph.pm' 2025-09-18T01:09:20,885 adding 'bionetgen/bng-linux/Perl2/Visualization/ProcessGraph.pm' 2025-09-18T01:09:20,887 adding 'bionetgen/bng-linux/Perl2/Visualization/README' 2025-09-18T01:09:20,888 adding 'bionetgen/bng-linux/Perl2/Visualization/RINF.pm' 2025-09-18T01:09:20,890 adding 'bionetgen/bng-linux/Perl2/Visualization/StructureGraph.pm' 2025-09-18T01:09:20,892 adding 'bionetgen/bng-linux/Perl2/Visualization/VisOptParse.pm' 2025-09-18T01:09:20,898 adding 'bionetgen/bng-linux/Perl2/Visualization/Viz.pm' 2025-09-18T01:09:20,902 adding 'bionetgen/bng-linux/Perl2/Visualization/analyze.pl' 2025-09-18T01:09:20,903 adding 'bionetgen/bng-linux/Perl2/Visualization/readGML.pl' 2025-09-18T01:09:20,905 adding 'bionetgen/bng-linux/Perl2/Visualization/visualize.pl' 2025-09-18T01:09:20,907 adding 'bionetgen/bng-linux/Perl2/XML/._TreePP.pm' 2025-09-18T01:09:20,911 adding 'bionetgen/bng-linux/Perl2/XML/TreePP.pm' 2025-09-18T01:09:21,262 adding 'bionetgen/bng-linux/bin/NFsim' 2025-09-18T01:09:21,569 adding 'bionetgen/bng-linux/bin/run_network' 2025-09-18T01:09:21,582 adding 'bionetgen/bng-linux/bin/sundials-config' 2025-09-18T01:09:21,584 adding 'bionetgen/bng-mac/BNG2.pl' 2025-09-18T01:09:21,586 adding 'bionetgen/bng-mac/VERSION' 2025-09-18T01:09:21,589 adding 'bionetgen/bng-mac/Perl2/._Aux2' 2025-09-18T01:09:21,590 adding 'bionetgen/bng-mac/Perl2/._BNGAction.pm' 2025-09-18T01:09:21,591 adding 'bionetgen/bng-mac/Perl2/._BNGMessages.pm' 2025-09-18T01:09:21,592 adding 'bionetgen/bng-mac/Perl2/._BNGModel.pm' 2025-09-18T01:09:21,593 adding 'bionetgen/bng-mac/Perl2/._BNGOptions.pm' 2025-09-18T01:09:21,594 adding 'bionetgen/bng-mac/Perl2/._BNGOutput.pm' 2025-09-18T01:09:21,595 adding 'bionetgen/bng-mac/Perl2/._BNGUtils.pm' 2025-09-18T01:09:21,596 adding 'bionetgen/bng-mac/Perl2/._Boolean2BNGL' 2025-09-18T01:09:21,598 adding 'bionetgen/bng-mac/Perl2/._Cache.pm' 2025-09-18T01:09:21,599 adding 'bionetgen/bng-mac/Perl2/._CartesianProduct.pm' 2025-09-18T01:09:21,600 adding 'bionetgen/bng-mac/Perl2/._Compartment.pm' 2025-09-18T01:09:21,601 adding 'bionetgen/bng-mac/Perl2/._CompartmentList.pm' 2025-09-18T01:09:21,602 adding 'bionetgen/bng-mac/Perl2/._Component.pm' 2025-09-18T01:09:21,603 adding 'bionetgen/bng-mac/Perl2/._ComponentType.pm' 2025-09-18T01:09:21,604 adding 'bionetgen/bng-mac/Perl2/._Console.pm' 2025-09-18T01:09:21,606 adding 'bionetgen/bng-mac/Perl2/._EnergyPattern.pm' 2025-09-18T01:09:21,607 adding 'bionetgen/bng-mac/Perl2/._Expression.pm' 2025-09-18T01:09:21,608 adding 'bionetgen/bng-mac/Perl2/._Function.pm' 2025-09-18T01:09:21,609 adding 'bionetgen/bng-mac/Perl2/._HNauty.pm' 2025-09-18T01:09:21,610 adding 'bionetgen/bng-mac/Perl2/._MacroBNG2.pl' 2025-09-18T01:09:21,611 adding 'bionetgen/bng-mac/Perl2/._MacroBNGModel.pm' 2025-09-18T01:09:21,612 adding 'bionetgen/bng-mac/Perl2/._Map.pm' 2025-09-18T01:09:21,614 adding 'bionetgen/bng-mac/Perl2/._ModelWrapper.pm' 2025-09-18T01:09:21,615 adding 'bionetgen/bng-mac/Perl2/._Molecule.pm' 2025-09-18T01:09:21,616 adding 'bionetgen/bng-mac/Perl2/._MoleculeType.pm' 2025-09-18T01:09:21,617 adding 'bionetgen/bng-mac/Perl2/._MoleculeTypesList.pm' 2025-09-18T01:09:21,618 adding 'bionetgen/bng-mac/Perl2/._Observable.pm' 2025-09-18T01:09:21,619 adding 'bionetgen/bng-mac/Perl2/._Param.pm' 2025-09-18T01:09:21,620 adding 'bionetgen/bng-mac/Perl2/._ParamList.pm' 2025-09-18T01:09:21,621 adding 'bionetgen/bng-mac/Perl2/._Population.pm' 2025-09-18T01:09:21,623 adding 'bionetgen/bng-mac/Perl2/._PopulationList.pm' 2025-09-18T01:09:21,624 adding 'bionetgen/bng-mac/Perl2/._RateLaw.pm' 2025-09-18T01:09:21,625 adding 'bionetgen/bng-mac/Perl2/._RefineRule.pm' 2025-09-18T01:09:21,626 adding 'bionetgen/bng-mac/Perl2/._Rxn.pm' 2025-09-18T01:09:21,627 adding 'bionetgen/bng-mac/Perl2/._RxnList.pm' 2025-09-18T01:09:21,628 adding 'bionetgen/bng-mac/Perl2/._RxnRule.pm' 2025-09-18T01:09:21,629 adding 'bionetgen/bng-mac/Perl2/._SBMLMultiAux.pm' 2025-09-18T01:09:21,630 adding 'bionetgen/bng-mac/Perl2/._Species.pm' 2025-09-18T01:09:21,632 adding 'bionetgen/bng-mac/Perl2/._SpeciesGraph.pm' 2025-09-18T01:09:21,633 adding 'bionetgen/bng-mac/Perl2/._SpeciesList.pm' 2025-09-18T01:09:21,634 adding 'bionetgen/bng-mac/Perl2/._Visualization' 2025-09-18T01:09:21,635 adding 'bionetgen/bng-mac/Perl2/._XML' 2025-09-18T01:09:21,636 adding 'bionetgen/bng-mac/Perl2/._XMLReader.pm' 2025-09-18T01:09:21,637 adding 'bionetgen/bng-mac/Perl2/._auto_hpp.pl' 2025-09-18T01:09:21,638 adding 'bionetgen/bng-mac/Perl2/._diff_net.pl' 2025-09-18T01:09:21,639 adding 'bionetgen/bng-mac/Perl2/._sample_vars_2.pl' 2025-09-18T01:09:21,641 adding 'bionetgen/bng-mac/Perl2/._scan_var.pl' 2025-09-18T01:09:21,642 adding 'bionetgen/bng-mac/Perl2/._test_cartesianproduct.pl' 2025-09-18T01:09:21,643 adding 'bionetgen/bng-mac/Perl2/._verify.pl' 2025-09-18T01:09:21,652 adding 'bionetgen/bng-mac/Perl2/BNGAction.pm' 2025-09-18T01:09:21,654 adding 'bionetgen/bng-mac/Perl2/BNGMessages.pm' 2025-09-18T01:09:21,664 adding 'bionetgen/bng-mac/Perl2/BNGModel.pm' 2025-09-18T01:09:21,666 adding 'bionetgen/bng-mac/Perl2/BNGOptions.pm' 2025-09-18T01:09:21,680 adding 'bionetgen/bng-mac/Perl2/BNGOutput.pm' 2025-09-18T01:09:21,683 adding 'bionetgen/bng-mac/Perl2/BNGUtils.pm' 2025-09-18T01:09:21,685 adding 'bionetgen/bng-mac/Perl2/Cache.pm' 2025-09-18T01:09:21,687 adding 'bionetgen/bng-mac/Perl2/CartesianProduct.pm' 2025-09-18T01:09:21,689 adding 'bionetgen/bng-mac/Perl2/Compartment.pm' 2025-09-18T01:09:21,691 adding 'bionetgen/bng-mac/Perl2/CompartmentList.pm' 2025-09-18T01:09:21,694 adding 'bionetgen/bng-mac/Perl2/Component.pm' 2025-09-18T01:09:21,695 adding 'bionetgen/bng-mac/Perl2/ComponentType.pm' 2025-09-18T01:09:21,697 adding 'bionetgen/bng-mac/Perl2/Console.pm' 2025-09-18T01:09:21,699 adding 'bionetgen/bng-mac/Perl2/EnergyPattern.pm' 2025-09-18T01:09:21,707 adding 'bionetgen/bng-mac/Perl2/Expression.pm' 2025-09-18T01:09:21,709 adding 'bionetgen/bng-mac/Perl2/Function.pm' 2025-09-18T01:09:21,713 adding 'bionetgen/bng-mac/Perl2/HNauty.pm' 2025-09-18T01:09:21,714 adding 'bionetgen/bng-mac/Perl2/MacroBNG2.pl' 2025-09-18T01:09:21,725 adding 'bionetgen/bng-mac/Perl2/MacroBNGModel.pm' 2025-09-18T01:09:21,727 adding 'bionetgen/bng-mac/Perl2/Map.pm' 2025-09-18T01:09:21,729 adding 'bionetgen/bng-mac/Perl2/ModelWrapper.pm' 2025-09-18T01:09:21,731 adding 'bionetgen/bng-mac/Perl2/Molecule.pm' 2025-09-18T01:09:21,734 adding 'bionetgen/bng-mac/Perl2/MoleculeType.pm' 2025-09-18T01:09:21,736 adding 'bionetgen/bng-mac/Perl2/MoleculeTypesList.pm' 2025-09-18T01:09:21,738 adding 'bionetgen/bng-mac/Perl2/Observable.pm' 2025-09-18T01:09:21,740 adding 'bionetgen/bng-mac/Perl2/Param.pm' 2025-09-18T01:09:21,743 adding 'bionetgen/bng-mac/Perl2/ParamList.pm' 2025-09-18T01:09:21,745 adding 'bionetgen/bng-mac/Perl2/Population.pm' 2025-09-18T01:09:21,746 adding 'bionetgen/bng-mac/Perl2/PopulationList.pm' 2025-09-18T01:09:21,751 adding 'bionetgen/bng-mac/Perl2/RateLaw.pm' 2025-09-18T01:09:21,754 adding 'bionetgen/bng-mac/Perl2/RefineRule.pm' 2025-09-18T01:09:21,757 adding 'bionetgen/bng-mac/Perl2/Rxn.pm' 2025-09-18T01:09:21,759 adding 'bionetgen/bng-mac/Perl2/RxnList.pm' 2025-09-18T01:09:21,777 adding 'bionetgen/bng-mac/Perl2/RxnRule.pm' 2025-09-18T01:09:21,780 adding 'bionetgen/bng-mac/Perl2/SBMLMultiAux.pm' 2025-09-18T01:09:21,782 adding 'bionetgen/bng-mac/Perl2/Species.pm' 2025-09-18T01:09:21,796 adding 'bionetgen/bng-mac/Perl2/SpeciesGraph.pm' 2025-09-18T01:09:21,799 adding 'bionetgen/bng-mac/Perl2/SpeciesList.pm' 2025-09-18T01:09:21,801 adding 'bionetgen/bng-mac/Perl2/XMLReader.pm' 2025-09-18T01:09:21,803 adding 'bionetgen/bng-mac/Perl2/auto_hpp.pl' 2025-09-18T01:09:21,805 adding 'bionetgen/bng-mac/Perl2/diff_net.pl' 2025-09-18T01:09:21,807 adding 'bionetgen/bng-mac/Perl2/sample_vars_2.pl' 2025-09-18T01:09:21,810 adding 'bionetgen/bng-mac/Perl2/scan_var.pl' 2025-09-18T01:09:21,811 adding 'bionetgen/bng-mac/Perl2/test_cartesianproduct.pl' 2025-09-18T01:09:21,812 adding 'bionetgen/bng-mac/Perl2/verify.pl' 2025-09-18T01:09:21,814 adding 'bionetgen/bng-mac/Perl2/Aux2/._MakeBin.pl' 2025-09-18T01:09:21,816 adding 'bionetgen/bng-mac/Perl2/Aux2/._bnglstat.pl' 2025-09-18T01:09:21,817 adding 'bionetgen/bng-mac/Perl2/Aux2/._count_blocks.pl' 2025-09-18T01:09:21,818 adding 'bionetgen/bng-mac/Perl2/Aux2/._count_lines.pl' 2025-09-18T01:09:21,819 adding 'bionetgen/bng-mac/Perl2/Aux2/._countdown.pl' 2025-09-18T01:09:21,820 adding 'bionetgen/bng-mac/Perl2/Aux2/._diff_cdat.pl' 2025-09-18T01:09:21,821 adding 'bionetgen/bng-mac/Perl2/Aux2/._express.pl' 2025-09-18T01:09:21,822 adding 'bionetgen/bng-mac/Perl2/Aux2/._express_main.pl' 2025-09-18T01:09:21,823 adding 'bionetgen/bng-mac/Perl2/Aux2/._group_size.pl' 2025-09-18T01:09:21,825 adding 'bionetgen/bng-mac/Perl2/Aux2/._runBNG.pl' 2025-09-18T01:09:21,826 adding 'bionetgen/bng-mac/Perl2/Aux2/._test.pl' 2025-09-18T01:09:21,827 adding 'bionetgen/bng-mac/Perl2/Aux2/._test_compartment.pl' 2025-09-18T01:09:21,828 adding 'bionetgen/bng-mac/Perl2/Aux2/._test_molorder.pl' 2025-09-18T01:09:21,829 adding 'bionetgen/bng-mac/Perl2/Aux2/._test_redirect.pl' 2025-09-18T01:09:21,830 adding 'bionetgen/bng-mac/Perl2/Aux2/._test_sub.pl' 2025-09-18T01:09:21,831 adding 'bionetgen/bng-mac/Perl2/Aux2/MakeBin.pl' 2025-09-18T01:09:21,833 adding 'bionetgen/bng-mac/Perl2/Aux2/bnglstat.pl' 2025-09-18T01:09:21,834 adding 'bionetgen/bng-mac/Perl2/Aux2/count_blocks.pl' 2025-09-18T01:09:21,835 adding 'bionetgen/bng-mac/Perl2/Aux2/count_lines.pl' 2025-09-18T01:09:21,836 adding 'bionetgen/bng-mac/Perl2/Aux2/countdown.pl' 2025-09-18T01:09:21,837 adding 'bionetgen/bng-mac/Perl2/Aux2/diff_cdat.pl' 2025-09-18T01:09:21,839 adding 'bionetgen/bng-mac/Perl2/Aux2/express.pl' 2025-09-18T01:09:21,840 adding 'bionetgen/bng-mac/Perl2/Aux2/express_main.pl' 2025-09-18T01:09:21,841 adding 'bionetgen/bng-mac/Perl2/Aux2/group_size.pl' 2025-09-18T01:09:21,843 adding 'bionetgen/bng-mac/Perl2/Aux2/runBNG.pl' 2025-09-18T01:09:21,844 adding 'bionetgen/bng-mac/Perl2/Aux2/test.pl' 2025-09-18T01:09:21,845 adding 'bionetgen/bng-mac/Perl2/Aux2/test_compartment.pl' 2025-09-18T01:09:21,846 adding 'bionetgen/bng-mac/Perl2/Aux2/test_molorder.pl' 2025-09-18T01:09:21,847 adding 'bionetgen/bng-mac/Perl2/Aux2/test_redirect.pl' 2025-09-18T01:09:21,849 adding 'bionetgen/bng-mac/Perl2/Aux2/test_sub.pl' 2025-09-18T01:09:21,850 adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/._ABC_example.txt' 2025-09-18T01:09:21,852 adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/._Boolean2BNGL.pl' 2025-09-18T01:09:21,853 adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/._Tcell_model_Nov2013_LAH.txt' 2025-09-18T01:09:21,854 adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/._Tcell_model_Oct2013.txt' 2025-09-18T01:09:21,855 adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/._Tcell_model_v16.txt' 2025-09-18T01:09:21,856 adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/ABC_example.txt' 2025-09-18T01:09:21,858 adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/Boolean2BNGL.pl' 2025-09-18T01:09:21,859 adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt' 2025-09-18T01:09:21,860 adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt' 2025-09-18T01:09:21,862 adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_v16.txt' 2025-09-18T01:09:21,864 adding 'bionetgen/bng-mac/Perl2/Visualization/._ContactMap.pm' 2025-09-18T01:09:21,865 adding 'bionetgen/bng-mac/Perl2/Visualization/._GML.pm' 2025-09-18T01:09:21,866 adding 'bionetgen/bng-mac/Perl2/Visualization/._NetworkGraph.pm' 2025-09-18T01:09:21,867 adding 'bionetgen/bng-mac/Perl2/Visualization/._ProcessGraph.pm' 2025-09-18T01:09:21,868 adding 'bionetgen/bng-mac/Perl2/Visualization/._README' 2025-09-18T01:09:21,870 adding 'bionetgen/bng-mac/Perl2/Visualization/._RINF.pm' 2025-09-18T01:09:21,871 adding 'bionetgen/bng-mac/Perl2/Visualization/._StructureGraph.pm' 2025-09-18T01:09:21,872 adding 'bionetgen/bng-mac/Perl2/Visualization/._VisOptParse.pm' 2025-09-18T01:09:21,873 adding 'bionetgen/bng-mac/Perl2/Visualization/._Viz.pm' 2025-09-18T01:09:21,874 adding 'bionetgen/bng-mac/Perl2/Visualization/._analyze.pl' 2025-09-18T01:09:21,875 adding 'bionetgen/bng-mac/Perl2/Visualization/._readGML.pl' 2025-09-18T01:09:21,876 adding 'bionetgen/bng-mac/Perl2/Visualization/._visualize.pl' 2025-09-18T01:09:21,878 adding 'bionetgen/bng-mac/Perl2/Visualization/ContactMap.pm' 2025-09-18T01:09:21,883 adding 'bionetgen/bng-mac/Perl2/Visualization/GML.pm' 2025-09-18T01:09:21,887 adding 'bionetgen/bng-mac/Perl2/Visualization/NetworkGraph.pm' 2025-09-18T01:09:21,890 adding 'bionetgen/bng-mac/Perl2/Visualization/ProcessGraph.pm' 2025-09-18T01:09:21,891 adding 'bionetgen/bng-mac/Perl2/Visualization/README' 2025-09-18T01:09:21,892 adding 'bionetgen/bng-mac/Perl2/Visualization/RINF.pm' 2025-09-18T01:09:21,895 adding 'bionetgen/bng-mac/Perl2/Visualization/StructureGraph.pm' 2025-09-18T01:09:21,896 adding 'bionetgen/bng-mac/Perl2/Visualization/VisOptParse.pm' 2025-09-18T01:09:21,903 adding 'bionetgen/bng-mac/Perl2/Visualization/Viz.pm' 2025-09-18T01:09:21,906 adding 'bionetgen/bng-mac/Perl2/Visualization/analyze.pl' 2025-09-18T01:09:21,908 adding 'bionetgen/bng-mac/Perl2/Visualization/readGML.pl' 2025-09-18T01:09:21,909 adding 'bionetgen/bng-mac/Perl2/Visualization/visualize.pl' 2025-09-18T01:09:21,911 adding 'bionetgen/bng-mac/Perl2/XML/._TreePP.pm' 2025-09-18T01:09:21,916 adding 'bionetgen/bng-mac/Perl2/XML/TreePP.pm' 2025-09-18T01:09:22,404 adding 'bionetgen/bng-mac/bin/NFsim' 2025-09-18T01:09:22,848 adding 'bionetgen/bng-mac/bin/run_network' 2025-09-18T01:09:22,870 adding 'bionetgen/bng-mac/bin/sundials-config' 2025-09-18T01:09:22,872 adding 'bionetgen/bng-win/BNG2.pl' 2025-09-18T01:09:22,874 adding 'bionetgen/bng-win/VERSION' 2025-09-18T01:09:22,877 adding 'bionetgen/bng-win/Perl2/._Aux2' 2025-09-18T01:09:22,878 adding 'bionetgen/bng-win/Perl2/._BNGAction.pm' 2025-09-18T01:09:22,879 adding 'bionetgen/bng-win/Perl2/._BNGMessages.pm' 2025-09-18T01:09:22,880 adding 'bionetgen/bng-win/Perl2/._BNGModel.pm' 2025-09-18T01:09:22,881 adding 'bionetgen/bng-win/Perl2/._BNGOptions.pm' 2025-09-18T01:09:22,883 adding 'bionetgen/bng-win/Perl2/._BNGOutput.pm' 2025-09-18T01:09:22,884 adding 'bionetgen/bng-win/Perl2/._BNGUtils.pm' 2025-09-18T01:09:22,885 adding 'bionetgen/bng-win/Perl2/._Boolean2BNGL' 2025-09-18T01:09:22,886 adding 'bionetgen/bng-win/Perl2/._Cache.pm' 2025-09-18T01:09:22,887 adding 'bionetgen/bng-win/Perl2/._CartesianProduct.pm' 2025-09-18T01:09:22,888 adding 'bionetgen/bng-win/Perl2/._Compartment.pm' 2025-09-18T01:09:22,889 adding 'bionetgen/bng-win/Perl2/._CompartmentList.pm' 2025-09-18T01:09:22,890 adding 'bionetgen/bng-win/Perl2/._Component.pm' 2025-09-18T01:09:22,892 adding 'bionetgen/bng-win/Perl2/._ComponentType.pm' 2025-09-18T01:09:22,893 adding 'bionetgen/bng-win/Perl2/._Console.pm' 2025-09-18T01:09:22,894 adding 'bionetgen/bng-win/Perl2/._EnergyPattern.pm' 2025-09-18T01:09:22,895 adding 'bionetgen/bng-win/Perl2/._Expression.pm' 2025-09-18T01:09:22,896 adding 'bionetgen/bng-win/Perl2/._Function.pm' 2025-09-18T01:09:22,897 adding 'bionetgen/bng-win/Perl2/._HNauty.pm' 2025-09-18T01:09:22,899 adding 'bionetgen/bng-win/Perl2/._MacroBNG2.pl' 2025-09-18T01:09:22,900 adding 'bionetgen/bng-win/Perl2/._MacroBNGModel.pm' 2025-09-18T01:09:22,901 adding 'bionetgen/bng-win/Perl2/._Map.pm' 2025-09-18T01:09:22,902 adding 'bionetgen/bng-win/Perl2/._ModelWrapper.pm' 2025-09-18T01:09:22,903 adding 'bionetgen/bng-win/Perl2/._Molecule.pm' 2025-09-18T01:09:22,904 adding 'bionetgen/bng-win/Perl2/._MoleculeType.pm' 2025-09-18T01:09:22,905 adding 'bionetgen/bng-win/Perl2/._MoleculeTypesList.pm' 2025-09-18T01:09:22,907 adding 'bionetgen/bng-win/Perl2/._Observable.pm' 2025-09-18T01:09:22,908 adding 'bionetgen/bng-win/Perl2/._Param.pm' 2025-09-18T01:09:22,909 adding 'bionetgen/bng-win/Perl2/._ParamList.pm' 2025-09-18T01:09:22,910 adding 'bionetgen/bng-win/Perl2/._Population.pm' 2025-09-18T01:09:22,911 adding 'bionetgen/bng-win/Perl2/._PopulationList.pm' 2025-09-18T01:09:22,912 adding 'bionetgen/bng-win/Perl2/._RateLaw.pm' 2025-09-18T01:09:22,913 adding 'bionetgen/bng-win/Perl2/._RefineRule.pm' 2025-09-18T01:09:22,914 adding 'bionetgen/bng-win/Perl2/._Rxn.pm' 2025-09-18T01:09:22,916 adding 'bionetgen/bng-win/Perl2/._RxnList.pm' 2025-09-18T01:09:22,917 adding 'bionetgen/bng-win/Perl2/._RxnRule.pm' 2025-09-18T01:09:22,918 adding 'bionetgen/bng-win/Perl2/._SBMLMultiAux.pm' 2025-09-18T01:09:22,919 adding 'bionetgen/bng-win/Perl2/._Species.pm' 2025-09-18T01:09:22,920 adding 'bionetgen/bng-win/Perl2/._SpeciesGraph.pm' 2025-09-18T01:09:22,921 adding 'bionetgen/bng-win/Perl2/._SpeciesList.pm' 2025-09-18T01:09:22,922 adding 'bionetgen/bng-win/Perl2/._Visualization' 2025-09-18T01:09:22,924 adding 'bionetgen/bng-win/Perl2/._XML' 2025-09-18T01:09:22,925 adding 'bionetgen/bng-win/Perl2/._XMLReader.pm' 2025-09-18T01:09:22,926 adding 'bionetgen/bng-win/Perl2/._auto_hpp.pl' 2025-09-18T01:09:22,927 adding 'bionetgen/bng-win/Perl2/._diff_net.pl' 2025-09-18T01:09:22,928 adding 'bionetgen/bng-win/Perl2/._sample_vars_2.pl' 2025-09-18T01:09:22,929 adding 'bionetgen/bng-win/Perl2/._scan_var.pl' 2025-09-18T01:09:22,930 adding 'bionetgen/bng-win/Perl2/._test_cartesianproduct.pl' 2025-09-18T01:09:22,931 adding 'bionetgen/bng-win/Perl2/._verify.pl' 2025-09-18T01:09:22,941 adding 'bionetgen/bng-win/Perl2/BNGAction.pm' 2025-09-18T01:09:22,943 adding 'bionetgen/bng-win/Perl2/BNGMessages.pm' 2025-09-18T01:09:22,953 adding 'bionetgen/bng-win/Perl2/BNGModel.pm' 2025-09-18T01:09:22,954 adding 'bionetgen/bng-win/Perl2/BNGOptions.pm' 2025-09-18T01:09:22,969 adding 'bionetgen/bng-win/Perl2/BNGOutput.pm' 2025-09-18T01:09:22,973 adding 'bionetgen/bng-win/Perl2/BNGUtils.pm' 2025-09-18T01:09:22,974 adding 'bionetgen/bng-win/Perl2/Cache.pm' 2025-09-18T01:09:22,976 adding 'bionetgen/bng-win/Perl2/CartesianProduct.pm' 2025-09-18T01:09:22,978 adding 'bionetgen/bng-win/Perl2/Compartment.pm' 2025-09-18T01:09:22,980 adding 'bionetgen/bng-win/Perl2/CompartmentList.pm' 2025-09-18T01:09:22,983 adding 'bionetgen/bng-win/Perl2/Component.pm' 2025-09-18T01:09:22,984 adding 'bionetgen/bng-win/Perl2/ComponentType.pm' 2025-09-18T01:09:22,986 adding 'bionetgen/bng-win/Perl2/Console.pm' 2025-09-18T01:09:22,988 adding 'bionetgen/bng-win/Perl2/EnergyPattern.pm' 2025-09-18T01:09:22,996 adding 'bionetgen/bng-win/Perl2/Expression.pm' 2025-09-18T01:09:22,999 adding 'bionetgen/bng-win/Perl2/Function.pm' 2025-09-18T01:09:23,003 adding 'bionetgen/bng-win/Perl2/HNauty.pm' 2025-09-18T01:09:23,004 adding 'bionetgen/bng-win/Perl2/MacroBNG2.pl' 2025-09-18T01:09:23,014 adding 'bionetgen/bng-win/Perl2/MacroBNGModel.pm' 2025-09-18T01:09:23,017 adding 'bionetgen/bng-win/Perl2/Map.pm' 2025-09-18T01:09:23,018 adding 'bionetgen/bng-win/Perl2/ModelWrapper.pm' 2025-09-18T01:09:23,021 adding 'bionetgen/bng-win/Perl2/Molecule.pm' 2025-09-18T01:09:23,023 adding 'bionetgen/bng-win/Perl2/MoleculeType.pm' 2025-09-18T01:09:23,025 adding 'bionetgen/bng-win/Perl2/MoleculeTypesList.pm' 2025-09-18T01:09:23,028 adding 'bionetgen/bng-win/Perl2/Observable.pm' 2025-09-18T01:09:23,030 adding 'bionetgen/bng-win/Perl2/Param.pm' 2025-09-18T01:09:23,033 adding 'bionetgen/bng-win/Perl2/ParamList.pm' 2025-09-18T01:09:23,035 adding 'bionetgen/bng-win/Perl2/Population.pm' 2025-09-18T01:09:23,036 adding 'bionetgen/bng-win/Perl2/PopulationList.pm' 2025-09-18T01:09:23,041 adding 'bionetgen/bng-win/Perl2/RateLaw.pm' 2025-09-18T01:09:23,044 adding 'bionetgen/bng-win/Perl2/RefineRule.pm' 2025-09-18T01:09:23,047 adding 'bionetgen/bng-win/Perl2/Rxn.pm' 2025-09-18T01:09:23,049 adding 'bionetgen/bng-win/Perl2/RxnList.pm' 2025-09-18T01:09:23,068 adding 'bionetgen/bng-win/Perl2/RxnRule.pm' 2025-09-18T01:09:23,071 adding 'bionetgen/bng-win/Perl2/SBMLMultiAux.pm' 2025-09-18T01:09:23,072 adding 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2025-09-18T01:09:23,204 adding 'bionetgen/bng-win/Perl2/XML/._TreePP.pm' 2025-09-18T01:09:23,209 adding 'bionetgen/bng-win/Perl2/XML/TreePP.pm' 2025-09-18T01:09:23,798 adding 'bionetgen/bng-win/bin/NFsim.exe' 2025-09-18T01:09:23,843 adding 'bionetgen/bng-win/bin/cyggcc_s-seh-1.dll' 2025-09-18T01:09:24,124 adding 'bionetgen/bng-win/bin/cygstdc++-6.dll' 2025-09-18T01:09:24,645 adding 'bionetgen/bng-win/bin/cygwin1.dll' 2025-09-18T01:09:24,679 adding 'bionetgen/bng-win/bin/cygz.dll' 2025-09-18T01:09:24,803 adding 'bionetgen/bng-win/bin/cygzstd-1.dll' 2025-09-18T01:09:26,502 adding 'bionetgen/bng-win/bin/run_network.exe' 2025-09-18T01:09:26,582 adding 'bionetgen/bng-win/bin/sundials-config' 2025-09-18T01:09:26,583 adding 'bionetgen/core/__init__.py' 2025-09-18T01:09:26,585 adding 'bionetgen/core/defaults.py' 2025-09-18T01:09:26,586 adding 'bionetgen/core/exc.py' 2025-09-18T01:09:26,588 adding 'bionetgen/core/main.py' 2025-09-18T01:09:26,589 adding 'bionetgen/core/notebook.py' 2025-09-18T01:09:26,590 adding 'bionetgen/core/version.py' 2025-09-18T01:09:26,592 adding 'bionetgen/core/tools/__init__.py' 2025-09-18T01:09:26,594 adding 'bionetgen/core/tools/cli.py' 2025-09-18T01:09:26,597 adding 'bionetgen/core/tools/gdiff.py' 2025-09-18T01:09:26,599 adding 'bionetgen/core/tools/info.py' 2025-09-18T01:09:26,600 adding 'bionetgen/core/tools/plot.py' 2025-09-18T01:09:26,602 adding 'bionetgen/core/tools/result.py' 2025-09-18T01:09:26,604 adding 'bionetgen/core/tools/visualize.py' 2025-09-18T01:09:26,605 adding 'bionetgen/core/utils/__init__.py' 2025-09-18T01:09:26,607 adding 'bionetgen/core/utils/logging.py' 2025-09-18T01:09:26,609 adding 'bionetgen/core/utils/utils.py' 2025-09-18T01:09:26,611 adding 'bionetgen/modelapi/__init__.py' 2025-09-18T01:09:26,613 adding 'bionetgen/modelapi/blocks.py' 2025-09-18T01:09:26,615 adding 'bionetgen/modelapi/bngfile.py' 2025-09-18T01:09:26,617 adding 'bionetgen/modelapi/bngparser.py' 2025-09-18T01:09:26,620 adding 'bionetgen/modelapi/model.py' 2025-09-18T01:09:26,623 adding 'bionetgen/modelapi/pattern.py' 2025-09-18T01:09:26,625 adding 'bionetgen/modelapi/pattern_reader.py' 2025-09-18T01:09:26,626 adding 'bionetgen/modelapi/rulemod.py' 2025-09-18T01:09:26,628 adding 'bionetgen/modelapi/runner.py' 2025-09-18T01:09:26,630 adding 'bionetgen/modelapi/structs.py' 2025-09-18T01:09:26,633 adding 'bionetgen/modelapi/xmlparsers.py' 2025-09-18T01:09:26,635 adding 'bionetgen/network/__init__.py' 2025-09-18T01:09:26,637 adding 'bionetgen/network/blocks.py' 2025-09-18T01:09:26,639 adding 'bionetgen/network/network.py' 2025-09-18T01:09:26,640 adding 'bionetgen/network/networkparser.py' 2025-09-18T01:09:26,642 adding 'bionetgen/network/structs.py' 2025-09-18T01:09:26,644 adding 'bionetgen/simulator/__init__.py' 2025-09-18T01:09:26,645 adding 'bionetgen/simulator/bngsimulator.py' 2025-09-18T01:09:26,647 adding 'bionetgen/simulator/csimulator.py' 2025-09-18T01:09:26,648 adding 'bionetgen/simulator/librrsimulator.py' 2025-09-18T01:09:26,650 adding 'bionetgen/simulator/simulators.py' 2025-09-18T01:09:26,654 adding 'bionetgen-0.8.6.dist-info/licenses/LICENSE' 2025-09-18T01:09:26,655 adding 'bionetgen-0.8.6.dist-info/METADATA' 2025-09-18T01:09:26,656 adding 'bionetgen-0.8.6.dist-info/WHEEL' 2025-09-18T01:09:26,657 adding 'bionetgen-0.8.6.dist-info/entry_points.txt' 2025-09-18T01:09:26,658 adding 'bionetgen-0.8.6.dist-info/top_level.txt' 2025-09-18T01:09:26,666 adding 'bionetgen-0.8.6.dist-info/RECORD' 2025-09-18T01:09:26,832 removing build/bdist.linux-armv7l/wheel 2025-09-18T01:09:27,311 Building wheel for bionetgen (setup.py): finished with status 'done' 2025-09-18T01:09:27,421 Created wheel for bionetgen: filename=bionetgen-0.8.6-py3-none-any.whl size=11991752 sha256=e2caf3075d202f919415bb6ab6bd54cbc489bc4a0cf770c511708901b97ae75e 2025-09-18T01:09:27,422 Stored in directory: /tmp/pip-ephem-wheel-cache-uzhs5sa2/wheels/83/3f/83/cce1ebd88a2c2de50d58e5915e91fbf6725e9e15d8d830d957 2025-09-18T01:09:27,453 Successfully built bionetgen 2025-09-18T01:09:27,745 Removed build tracker: '/tmp/pip-req-tracker-h08dh_lw'