2025-09-18T03:03:42,880 Created temporary directory: /tmp/pip-build-tracker-cqhlaqfe 2025-09-18T03:03:42,880 Initialized build tracking at /tmp/pip-build-tracker-cqhlaqfe 2025-09-18T03:03:42,881 Created build tracker: /tmp/pip-build-tracker-cqhlaqfe 2025-09-18T03:03:42,881 Entered build tracker: /tmp/pip-build-tracker-cqhlaqfe 2025-09-18T03:03:42,881 Created temporary directory: /tmp/pip-wheel-kq39oe_x 2025-09-18T03:03:42,884 Created temporary directory: /tmp/pip-ephem-wheel-cache-b96gx1wq 2025-09-18T03:03:42,940 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-18T03:03:42,942 2 location(s) to search for versions of kssdutils: 2025-09-18T03:03:42,942 * https://pypi.org/simple/kssdutils/ 2025-09-18T03:03:42,942 * https://www.piwheels.org/simple/kssdutils/ 2025-09-18T03:03:42,943 Fetching project page and analyzing links: https://pypi.org/simple/kssdutils/ 2025-09-18T03:03:42,943 Getting page https://pypi.org/simple/kssdutils/ 2025-09-18T03:03:42,944 Found index url https://pypi.org/simple/ 2025-09-18T03:03:43,013 Fetched page https://pypi.org/simple/kssdutils/ as application/vnd.pypi.simple.v1+json 2025-09-18T03:03:43,015 Found link https://files.pythonhosted.org/packages/61/ef/1bdb91b53dbe31ea0be28ab2c2292994b6228b357a8d54b69ac642f81f01/kssdutils-1.0.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.0 2025-09-18T03:03:43,015 Found link https://files.pythonhosted.org/packages/6f/f6/cc67acf92ea770b5f6a8bd97d375432881861935beafe9ebd4031a73482c/kssdutils-1.0.1.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.1 2025-09-18T03:03:43,015 Found link https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.2 2025-09-18T03:03:43,015 Found link https://files.pythonhosted.org/packages/3e/92/7a94130bd54e0e3dd20c1a609aef2f24875b86e9d61752f63b500d3f86f5/kssdutils-1.0.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.3 2025-09-18T03:03:43,016 Found link https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.5 2025-09-18T03:03:43,016 Found link https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.6 2025-09-18T03:03:43,016 Found link https://files.pythonhosted.org/packages/78/17/7776b7c3b149fedfb0fba98bce07fdf08cb53773dafa174f7fda9ce4df55/kssdutils-1.0.7.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.7 2025-09-18T03:03:43,016 Found link https://files.pythonhosted.org/packages/a7/50/138f2b5f98dcd2327609362e505af19857468da67dba88eaf6c8d8fdb83a/kssdutils-1.1.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.0 2025-09-18T03:03:43,016 Found link https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.2 2025-09-18T03:03:43,017 Found link https://files.pythonhosted.org/packages/d0/e9/badb25888a9e48aa82e2389e848aff81ae6affd17af96622974dc314ae52/kssdutils-1.1.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.3 2025-09-18T03:03:43,017 Found link https://files.pythonhosted.org/packages/b3/43/18e812a7529c356cfa20627f201f1956e4b8203e1db782861ad6e5900bf8/kssdutils-1.1.4.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.4 2025-09-18T03:03:43,017 Found link https://files.pythonhosted.org/packages/98/8c/0eb4850f10a9da51072d7be474ecffd0f808423f21838f543dc88db7ddd2/kssdutils-1.1.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.5 2025-09-18T03:03:43,017 Found link https://files.pythonhosted.org/packages/c3/44/c52bfc36ee73ebbc978099403a176e76446f23b1691c9df71bd38bbe6430/kssdutils-1.1.7.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.7 2025-09-18T03:03:43,017 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdutils/ 2025-09-18T03:03:43,018 Getting page https://www.piwheels.org/simple/kssdutils/ 2025-09-18T03:03:43,018 Found index url https://www.piwheels.org/simple/ 2025-09-18T03:03:43,119 Fetched page https://www.piwheels.org/simple/kssdutils/ as text/html 2025-09-18T03:03:43,127 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp311-cp311-linux_armv6l.whl#sha256=5beb32a7772765a880c50ab75f1b8a504d6c960523a444ea7829d7fef3671c4c (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,127 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp311-cp311-linux_armv7l.whl#sha256=5beb32a7772765a880c50ab75f1b8a504d6c960523a444ea7829d7fef3671c4c (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,128 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv6l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,128 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv7l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,128 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp39-cp39-linux_armv6l.whl#sha256=109623235074cfc937bce9a38d6d20bcf42003659045c0bda63bb091408c003d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,128 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp39-cp39-linux_armv7l.whl#sha256=109623235074cfc937bce9a38d6d20bcf42003659045c0bda63bb091408c003d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,128 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,128 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,128 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=c752a2d90aa02aedfa92d27348e83c6e3cecace8633c4e91679da40ada370a66 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,128 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=c752a2d90aa02aedfa92d27348e83c6e3cecace8633c4e91679da40ada370a66 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,128 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,129 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,129 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=0bc9a271bdbc41d568d8a3834e847d4a29d5af0a18cc86d8743ca8a193272a98 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,129 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=0bc9a271bdbc41d568d8a3834e847d4a29d5af0a18cc86d8743ca8a193272a98 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,129 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,129 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,129 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=e7719ceb9b4ce3c5cfbfa12e1b4e8d314e117ca845fd6bedcafe8abadb5ca1f3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,129 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=e7719ceb9b4ce3c5cfbfa12e1b4e8d314e117ca845fd6bedcafe8abadb5ca1f3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,129 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv6l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,130 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv7l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,130 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp39-cp39-linux_armv6l.whl#sha256=8a0994f4f968bd25192b59f99dc7d482fae725cc841190d55a79c2ec3c47e0cd (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,130 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp39-cp39-linux_armv7l.whl#sha256=8a0994f4f968bd25192b59f99dc7d482fae725cc841190d55a79c2ec3c47e0cd (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,130 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv6l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,130 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv7l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,130 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,130 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,130 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,131 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,131 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,131 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,131 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,131 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,131 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,131 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,131 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,132 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,132 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,132 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,132 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv6l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,132 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv7l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,132 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,132 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,133 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,133 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,133 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,133 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2025-09-18T03:03:43,133 Skipping link: not a file: https://www.piwheels.org/simple/kssdutils/ 2025-09-18T03:03:43,133 Skipping link: not a file: https://pypi.org/simple/kssdutils/ 2025-09-18T03:03:43,159 Given no hashes to check 1 links for project 'kssdutils': discarding no candidates 2025-09-18T03:03:43,160 Collecting kssdutils==1.1.7 2025-09-18T03:03:43,161 Created temporary directory: /tmp/pip-unpack-g9ztyuww 2025-09-18T03:03:43,222 Downloading kssdutils-1.1.7.tar.gz (47 kB) 2025-09-18T03:03:43,274 Added kssdutils==1.1.7 from https://files.pythonhosted.org/packages/c3/44/c52bfc36ee73ebbc978099403a176e76446f23b1691c9df71bd38bbe6430/kssdutils-1.1.7.tar.gz to build tracker '/tmp/pip-build-tracker-cqhlaqfe' 2025-09-18T03:03:43,275 Running setup.py (path:/tmp/pip-wheel-kq39oe_x/kssdutils_0a133d280d1c46679cf10e9504bd4d30/setup.py) egg_info for package kssdutils 2025-09-18T03:03:43,275 Created temporary directory: /tmp/pip-pip-egg-info-7vq760kh 2025-09-18T03:03:43,275 Preparing metadata (setup.py): started 2025-09-18T03:03:43,276 Running command python setup.py egg_info 2025-09-18T03:03:44,426 running egg_info 2025-09-18T03:03:44,497 creating /tmp/pip-pip-egg-info-7vq760kh/kssdutils.egg-info 2025-09-18T03:03:44,497 writing /tmp/pip-pip-egg-info-7vq760kh/kssdutils.egg-info/PKG-INFO 2025-09-18T03:03:44,498 writing dependency_links to /tmp/pip-pip-egg-info-7vq760kh/kssdutils.egg-info/dependency_links.txt 2025-09-18T03:03:44,499 writing requirements to /tmp/pip-pip-egg-info-7vq760kh/kssdutils.egg-info/requires.txt 2025-09-18T03:03:44,499 writing top-level names to /tmp/pip-pip-egg-info-7vq760kh/kssdutils.egg-info/top_level.txt 2025-09-18T03:03:44,500 writing manifest file '/tmp/pip-pip-egg-info-7vq760kh/kssdutils.egg-info/SOURCES.txt' 2025-09-18T03:03:44,796 reading manifest file '/tmp/pip-pip-egg-info-7vq760kh/kssdutils.egg-info/SOURCES.txt' 2025-09-18T03:03:44,796 reading manifest template 'MANIFEST.in' 2025-09-18T03:03:44,800 writing manifest file '/tmp/pip-pip-egg-info-7vq760kh/kssdutils.egg-info/SOURCES.txt' 2025-09-18T03:03:44,911 Preparing metadata (setup.py): finished with status 'done' 2025-09-18T03:03:44,915 Source in /tmp/pip-wheel-kq39oe_x/kssdutils_0a133d280d1c46679cf10e9504bd4d30 has version 1.1.7, which satisfies requirement kssdutils==1.1.7 from https://files.pythonhosted.org/packages/c3/44/c52bfc36ee73ebbc978099403a176e76446f23b1691c9df71bd38bbe6430/kssdutils-1.1.7.tar.gz 2025-09-18T03:03:44,916 Removed kssdutils==1.1.7 from https://files.pythonhosted.org/packages/c3/44/c52bfc36ee73ebbc978099403a176e76446f23b1691c9df71bd38bbe6430/kssdutils-1.1.7.tar.gz from build tracker '/tmp/pip-build-tracker-cqhlaqfe' 2025-09-18T03:03:44,919 Created temporary directory: /tmp/pip-unpack-3zx5unbp 2025-09-18T03:03:44,919 Created temporary directory: /tmp/pip-unpack-3jo_4b8i 2025-09-18T03:03:44,920 Building wheels for collected packages: kssdutils 2025-09-18T03:03:44,921 Created temporary directory: /tmp/pip-wheel-5ib43b1t 2025-09-18T03:03:44,921 DEPRECATION: Building 'kssdutils' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'kssdutils'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-18T03:03:44,922 Building wheel for kssdutils (setup.py): started 2025-09-18T03:03:44,923 Destination directory: /tmp/pip-wheel-5ib43b1t 2025-09-18T03:03:44,923 Running command python setup.py bdist_wheel 2025-09-18T03:03:46,325 running bdist_wheel 2025-09-18T03:03:46,703 running build 2025-09-18T03:03:46,703 running build_py 2025-09-18T03:03:46,780 creating build/lib.linux-armv7l-cpython-313 2025-09-18T03:03:46,780 copying kssdutils.py -> build/lib.linux-armv7l-cpython-313 2025-09-18T03:03:46,781 running egg_info 2025-09-18T03:03:46,857 writing kssdutils.egg-info/PKG-INFO 2025-09-18T03:03:46,858 writing dependency_links to kssdutils.egg-info/dependency_links.txt 2025-09-18T03:03:46,859 writing requirements to kssdutils.egg-info/requires.txt 2025-09-18T03:03:46,859 writing top-level names to kssdutils.egg-info/top_level.txt 2025-09-18T03:03:46,942 reading manifest file 'kssdutils.egg-info/SOURCES.txt' 2025-09-18T03:03:46,944 reading manifest template 'MANIFEST.in' 2025-09-18T03:03:46,949 writing manifest file 'kssdutils.egg-info/SOURCES.txt' 2025-09-18T03:03:46,950 running build_ext 2025-09-18T03:03:47,325 building 'kssdtool' extension 2025-09-18T03:03:47,327 creating build/temp.linux-armv7l-cpython-313 2025-09-18T03:03:47,328 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c co2mco.c -o build/temp.linux-armv7l-cpython-313/co2mco.o -fopenmp 2025-09-18T03:03:47,507 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2025-09-18T03:03:47,507 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-18T03:03:47,507 109 | for (unsigned int i = 0; i < comp_num; i++) { 2025-09-18T03:03:47,507 | ^ 2025-09-18T03:03:47,511 co2mco.c: In function ‘co2unitllmco’: 2025-09-18T03:03:47,511 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-09-18T03:03:47,511 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2025-09-18T03:03:47,511 | ^ 2025-09-18T03:03:48,197 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_composite.c -o build/temp.linux-armv7l-cpython-313/command_composite.o -fopenmp 2025-09-18T03:03:48,591 command_composite.c: In function ‘get_species_abundance’: 2025-09-18T03:03:48,591 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-18T03:03:48,591 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2025-09-18T03:03:48,591 | ^~ 2025-09-18T03:03:48,591 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-09-18T03:03:48,592 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2025-09-18T03:03:48,592 | ^~ 2025-09-18T03:03:48,592 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:48,592 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-18T03:03:48,592 | ^ 2025-09-18T03:03:48,592 command_composite.c:64:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:48,592 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-18T03:03:48,592 | ^~~~~~~~~~ 2025-09-18T03:03:48,592 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-18T03:03:48,592 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-09-18T03:03:48,593 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:48,593 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:48,593 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-18T03:03:48,593 | ^ 2025-09-18T03:03:48,593 command_composite.c:70:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:48,593 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-18T03:03:48,593 | ^~~~~~~~~~ 2025-09-18T03:03:48,593 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-18T03:03:48,593 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-09-18T03:03:48,593 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:48,594 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:48,594 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-18T03:03:48,594 | ^ 2025-09-18T03:03:48,594 command_composite.c:76:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:48,594 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-18T03:03:48,594 | ^~~~~~~~~~ 2025-09-18T03:03:48,594 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-18T03:03:48,594 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-09-18T03:03:48,594 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:48,594 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:48,595 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-18T03:03:48,595 | ^ 2025-09-18T03:03:48,595 command_composite.c:82:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:48,595 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-18T03:03:48,595 | ^~~~~~~~~~ 2025-09-18T03:03:48,595 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-09-18T03:03:48,595 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-09-18T03:03:48,595 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:48,595 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:48,595 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-18T03:03:48,595 | ^ 2025-09-18T03:03:48,596 command_composite.c:88:31: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:48,596 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-18T03:03:48,596 | ^~~~~~~~~~~~ 2025-09-18T03:03:48,596 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2025-09-18T03:03:48,596 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-09-18T03:03:48,596 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:48,835 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist.c -o build/temp.linux-armv7l-cpython-313/command_dist.o -fopenmp 2025-09-18T03:03:49,126 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-18T03:03:49,129 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-18T03:03:49,129 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-18T03:03:49,129 | ~~^ 2025-09-18T03:03:49,129 | | 2025-09-18T03:03:49,129 | long unsigned int 2025-09-18T03:03:49,129 | %u 2025-09-18T03:03:49,129 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-18T03:03:49,129 | ~~~~~~~ 2025-09-18T03:03:49,130 | | 2025-09-18T03:03:49,130 | size_t {aka unsigned int} 2025-09-18T03:03:49,131 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-18T03:03:49,132 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-18T03:03:49,132 | ~~^ 2025-09-18T03:03:49,132 | | 2025-09-18T03:03:49,132 | long unsigned int 2025-09-18T03:03:49,132 | %u 2025-09-18T03:03:49,132 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-18T03:03:49,132 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-18T03:03:49,132 | ~~~~~~~~~ 2025-09-18T03:03:49,132 | | 2025-09-18T03:03:49,132 | size_t {aka unsigned int} 2025-09-18T03:03:49,133 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-18T03:03:49,133 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-18T03:03:49,133 | ~~^ 2025-09-18T03:03:49,134 | | 2025-09-18T03:03:49,134 | long unsigned int 2025-09-18T03:03:49,134 | %u 2025-09-18T03:03:49,134 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-18T03:03:49,134 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-18T03:03:49,134 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:49,134 | | 2025-09-18T03:03:49,134 | unsigned int 2025-09-18T03:03:49,136 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-18T03:03:49,137 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2025-09-18T03:03:49,137 | ^ 2025-09-18T03:03:49,144 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-18T03:03:49,146 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-18T03:03:49,146 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-18T03:03:49,146 | ~~^ ~~~~~~~ 2025-09-18T03:03:49,146 | | | 2025-09-18T03:03:49,146 | long unsigned int size_t {aka unsigned int} 2025-09-18T03:03:49,146 | %u 2025-09-18T03:03:49,148 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-18T03:03:49,148 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-18T03:03:49,149 | ~~^ 2025-09-18T03:03:49,149 | | 2025-09-18T03:03:49,149 | long unsigned int 2025-09-18T03:03:49,149 | %u 2025-09-18T03:03:49,149 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-18T03:03:49,149 | ~~~~~~~~~ 2025-09-18T03:03:49,149 | | 2025-09-18T03:03:49,149 | size_t {aka unsigned int} 2025-09-18T03:03:49,151 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-18T03:03:49,151 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-09-18T03:03:49,151 | ~~^ 2025-09-18T03:03:49,151 | | 2025-09-18T03:03:49,151 | long unsigned int 2025-09-18T03:03:49,152 | %u 2025-09-18T03:03:49,152 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-09-18T03:03:49,152 865 | (size_t) b * unitsz_distf_mapped); 2025-09-18T03:03:49,152 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:49,152 | | 2025-09-18T03:03:49,152 | unsigned int 2025-09-18T03:03:49,154 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2025-09-18T03:03:49,154 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2025-09-18T03:03:49,154 | ^~~~~~~ 2025-09-18T03:03:49,155 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2025-09-18T03:03:49,155 809 | struct stat cbd_fcode_stat; 2025-09-18T03:03:49,155 | ^~~~~~~~~~~~~~ 2025-09-18T03:03:49,156 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2025-09-18T03:03:49,156 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-18T03:03:49,156 | ^~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:49,157 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2025-09-18T03:03:49,157 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-09-18T03:03:49,157 | ^~~~~~~~~~~~~~~~~ 2025-09-18T03:03:49,164 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-18T03:03:49,167 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-18T03:03:49,167 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-18T03:03:49,167 | ~~^ 2025-09-18T03:03:49,167 | | 2025-09-18T03:03:49,167 | long unsigned int 2025-09-18T03:03:49,167 | %u 2025-09-18T03:03:49,168 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-18T03:03:49,168 | ~~~~~~~ 2025-09-18T03:03:49,168 | | 2025-09-18T03:03:49,168 | size_t {aka unsigned int} 2025-09-18T03:03:49,170 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-18T03:03:49,170 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-18T03:03:49,170 | ~~^ 2025-09-18T03:03:49,170 | | 2025-09-18T03:03:49,170 | long unsigned int 2025-09-18T03:03:49,170 | %u 2025-09-18T03:03:49,170 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-18T03:03:49,171 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-18T03:03:49,171 | ~~~~~~~~~ 2025-09-18T03:03:49,171 | | 2025-09-18T03:03:49,171 | size_t {aka unsigned int} 2025-09-18T03:03:49,173 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-09-18T03:03:49,173 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-09-18T03:03:49,173 | ~~^ 2025-09-18T03:03:49,173 | | 2025-09-18T03:03:49,173 | long unsigned int 2025-09-18T03:03:49,173 | %u 2025-09-18T03:03:49,173 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-09-18T03:03:49,174 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-09-18T03:03:49,174 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:49,174 | | 2025-09-18T03:03:49,174 | unsigned int 2025-09-18T03:03:49,178 command_dist.c: In function ‘mco_co_dist_core’: 2025-09-18T03:03:49,180 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-18T03:03:49,180 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2025-09-18T03:03:49,180 | ^ 2025-09-18T03:03:49,181 command_dist.c: In function ‘fname_dist_print’: 2025-09-18T03:03:49,182 command_dist.c:1163:25: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘__off64_t’ {aka ‘long long int’} [-Wsign-compare] 2025-09-18T03:03:49,183 1163 | for (llong i = 0; i < s.st_size / sizeof(ctx_obj_ct_t); i++) { 2025-09-18T03:03:49,183 | ^ 2025-09-18T03:03:49,188 command_dist.c: In function ‘koc_dist_print_nobin’: 2025-09-18T03:03:49,189 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-18T03:03:49,190 1239 | for (int rid = 0; rid < ref_num; rid++) 2025-09-18T03:03:49,190 | ^ 2025-09-18T03:03:49,192 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-18T03:03:49,192 1245 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-18T03:03:49,192 | ^ 2025-09-18T03:03:49,198 command_dist.c: In function ‘dist_print_nobin’: 2025-09-18T03:03:49,199 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-18T03:03:49,199 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2025-09-18T03:03:49,199 | ^ 2025-09-18T03:03:49,202 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-18T03:03:49,202 1356 | for (int rid = 0; rid < ref_num; rid++) { 2025-09-18T03:03:49,203 | ^ 2025-09-18T03:03:49,205 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-09-18T03:03:49,205 1382 | for (int rid = 0; rid < ref_num; rid++) 2025-09-18T03:03:49,205 | ^ 2025-09-18T03:03:49,599 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2025-09-18T03:03:49,600 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2025-09-18T03:03:49,600 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2025-09-18T03:03:49,600 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:49,600 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2025-09-18T03:03:49,600 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2025-09-18T03:03:49,600 | ^~~~~~~~~~~~ 2025-09-18T03:03:50,404 command_dist.c: In function ‘get_dim_shuffle’: 2025-09-18T03:03:50,404 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2025-09-18T03:03:50,404 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-18T03:03:50,404 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:50,405 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2025-09-18T03:03:50,405 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-09-18T03:03:50,405 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:51,322 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-09-18T03:03:51,323 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:51,323 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-18T03:03:51,323 | ^~ ~~~~~~~~~ 2025-09-18T03:03:51,324 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-18T03:03:51,324 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-18T03:03:51,324 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:51,325 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-18T03:03:51,325 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-18T03:03:51,325 | ^~~~~~~~~~~~~~~ 2025-09-18T03:03:51,326 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-18T03:03:51,326 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-18T03:03:51,326 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:51,328 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-18T03:03:51,328 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-18T03:03:51,328 | ^~~~~~~~~~~ 2025-09-18T03:03:51,329 command_dist.c:681:38: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:51,329 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-18T03:03:51,329 | ^~~~~~~~~~~~~~~~~ 2025-09-18T03:03:51,330 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-18T03:03:51,330 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-18T03:03:51,330 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:51,331 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-18T03:03:51,331 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-18T03:03:51,331 | ^~~~~ 2025-09-18T03:03:51,331 command_dist.c:682:32: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:51,332 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-18T03:03:51,332 | ^~~~~~~~~~~ 2025-09-18T03:03:51,332 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-18T03:03:51,332 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-18T03:03:51,333 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:51,578 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-09-18T03:03:51,580 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:51,580 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-18T03:03:51,580 | ^~ ~~~~~~~~~ 2025-09-18T03:03:51,581 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-18T03:03:51,581 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-18T03:03:51,581 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:51,582 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-18T03:03:51,582 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-18T03:03:51,582 | ^~~~~~~~~~~~~~~ 2025-09-18T03:03:51,583 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-18T03:03:51,583 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-18T03:03:51,583 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:51,584 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-18T03:03:51,584 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-18T03:03:51,584 | ^~~~~~~~~~~~~ 2025-09-18T03:03:51,585 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-18T03:03:51,585 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-18T03:03:51,585 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:51,586 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:51,587 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-18T03:03:51,587 | ^ 2025-09-18T03:03:51,588 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2025-09-18T03:03:51,588 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-18T03:03:51,588 | ^~~~~~~~~~ 2025-09-18T03:03:51,589 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-18T03:03:51,589 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-09-18T03:03:51,589 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:51,590 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:51,590 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-18T03:03:51,590 | ^ 2025-09-18T03:03:51,591 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2025-09-18T03:03:51,591 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-18T03:03:51,591 | ^~~~~~~~~~ 2025-09-18T03:03:51,592 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-09-18T03:03:51,592 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-09-18T03:03:51,592 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:51,857 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-09-18T03:03:51,859 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:51,860 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-18T03:03:51,860 | ^~ ~~~~~~~~~ 2025-09-18T03:03:51,861 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-09-18T03:03:51,861 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-09-18T03:03:51,861 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:51,862 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-18T03:03:51,862 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-18T03:03:51,862 | ^~~~~~~~~~~~~~~ 2025-09-18T03:03:51,864 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-09-18T03:03:51,864 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-09-18T03:03:51,864 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:51,865 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-18T03:03:51,865 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-18T03:03:51,865 | ^~~~~~~~~~~~~ 2025-09-18T03:03:51,866 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-18T03:03:51,866 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-09-18T03:03:51,866 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:51,869 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-18T03:03:51,869 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-18T03:03:51,869 | ^~~~~~~~~~~ 2025-09-18T03:03:51,870 command_dist.c:1022:38: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:51,870 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-18T03:03:51,870 | ^~~~~~~~~~~~~~~~~ 2025-09-18T03:03:51,871 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-09-18T03:03:51,872 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-09-18T03:03:51,872 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:51,873 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-09-18T03:03:51,873 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-18T03:03:51,873 | ^~~~~ 2025-09-18T03:03:51,874 command_dist.c:1023:32: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:51,874 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-18T03:03:51,874 | ^~~~~~~~~~~ 2025-09-18T03:03:51,876 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-18T03:03:51,876 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-09-18T03:03:51,876 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:52,155 command_dist.c: In function ‘combine_queries’: 2025-09-18T03:03:52,157 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-18T03:03:52,157 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-18T03:03:52,157 | ^ 2025-09-18T03:03:52,159 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-18T03:03:52,159 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-09-18T03:03:52,159 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:52,161 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-18T03:03:52,161 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-18T03:03:52,161 | ^ 2025-09-18T03:03:52,163 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-18T03:03:52,163 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-09-18T03:03:52,163 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:52,166 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:52,166 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-18T03:03:52,166 | ^~ ~~~~~~~~ 2025-09-18T03:03:52,168 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-09-18T03:03:52,168 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-09-18T03:03:52,169 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:52,649 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-313/command_dist_wrapper.o -fopenmp 2025-09-18T03:03:52,824 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_set.c -o build/temp.linux-armv7l-cpython-313/command_set.o -fopenmp 2025-09-18T03:03:52,997 command_set.c: In function ‘sketch_operate’: 2025-09-18T03:03:52,998 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-09-18T03:03:52,998 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2025-09-18T03:03:52,998 | ^ 2025-09-18T03:03:53,009 command_set.c: In function ‘combin_subset_pans’: 2025-09-18T03:03:53,010 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-18T03:03:53,010 457 | free(co_dstat_fpath); 2025-09-18T03:03:53,010 | ^~~~~~~~~~~~~~ 2025-09-18T03:03:53,011 In file included from kssdheaders/global_basic.h:159, 2025-09-18T03:03:53,011 from command_set.c:15: 2025-09-18T03:03:53,011 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-18T03:03:53,011 687 | extern void free (void *__ptr) __THROW; 2025-09-18T03:03:53,011 | ~~~~~~^~~~~ 2025-09-18T03:03:53,017 command_set.c: In function ‘grouping_genomes’: 2025-09-18T03:03:53,017 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-09-18T03:03:53,018 562 | free(co_dstat_fpath); 2025-09-18T03:03:53,018 | ^~~~~~~~~~~~~~ 2025-09-18T03:03:53,018 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-09-18T03:03:53,018 687 | extern void free (void *__ptr) __THROW; 2025-09-18T03:03:53,018 | ~~~~~~^~~~~ 2025-09-18T03:03:53,197 command_set.c: In function ‘sketch_union’: 2025-09-18T03:03:53,197 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-18T03:03:53,197 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-18T03:03:53,198 | ^ 2025-09-18T03:03:53,198 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-18T03:03:53,198 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-18T03:03:53,198 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,198 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:53,198 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-18T03:03:53,198 | ^~ ~~~~~~~~~~~ 2025-09-18T03:03:53,198 command_set.c:82:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:53,198 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-18T03:03:53,198 | ^~~~~~~~~~ 2025-09-18T03:03:53,198 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-18T03:03:53,199 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-18T03:03:53,199 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,199 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:53,199 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-18T03:03:53,199 | ^~ ~~~~~~~~~~ 2025-09-18T03:03:53,199 command_set.c:92:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:53,199 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-18T03:03:53,199 | ^~~~~~~~~~ 2025-09-18T03:03:53,199 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-18T03:03:53,200 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-09-18T03:03:53,200 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,328 command_set.c: In function ‘sketch_operate’: 2025-09-18T03:03:53,329 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:53,329 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-18T03:03:53,329 | ^~ ~~~~~~~~~~ 2025-09-18T03:03:53,329 command_set.c:153:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:53,329 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-18T03:03:53,329 | ^~~~~~~~~~ 2025-09-18T03:03:53,329 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-09-18T03:03:53,329 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-09-18T03:03:53,329 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,330 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:53,330 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-18T03:03:53,330 | ^~ ~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,330 command_set.c:155:29: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:53,330 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-18T03:03:53,330 | ^~~~~~~~~~ 2025-09-18T03:03:53,330 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-18T03:03:53,330 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-09-18T03:03:53,330 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,330 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:53,331 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-18T03:03:53,331 | ^~ ~~~~~~~~~~~ 2025-09-18T03:03:53,331 command_set.c:165:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:53,331 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-18T03:03:53,331 | ^~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,331 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-18T03:03:53,331 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-18T03:03:53,331 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,331 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:53,331 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-18T03:03:53,331 | ^~ ~~~~~~~~~~~ 2025-09-18T03:03:53,332 command_set.c:169:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:53,332 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-18T03:03:53,332 | ^~~~~~~~~~ 2025-09-18T03:03:53,332 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-18T03:03:53,332 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-09-18T03:03:53,332 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,332 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:53,332 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-18T03:03:53,332 | ^~ ~~~~~~~~~~~ 2025-09-18T03:03:53,332 command_set.c:174:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:53,332 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-18T03:03:53,333 | ^~~~~~~~~~ 2025-09-18T03:03:53,333 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-18T03:03:53,333 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-09-18T03:03:53,333 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,333 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:53,333 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-18T03:03:53,333 | ^~ ~~~~~~~~~~~ 2025-09-18T03:03:53,333 command_set.c:187:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:53,333 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-18T03:03:53,333 | ^~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,333 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-18T03:03:53,334 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-09-18T03:03:53,334 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,334 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-18T03:03:53,334 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-18T03:03:53,334 | ^ 2025-09-18T03:03:53,334 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-18T03:03:53,334 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-18T03:03:53,334 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,500 command_set.c: In function ‘uniq_sketch_union’: 2025-09-18T03:03:53,501 command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-18T03:03:53,501 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-09-18T03:03:53,501 | ^ 2025-09-18T03:03:53,501 command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2025-09-18T03:03:53,501 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-09-18T03:03:53,501 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,501 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-18T03:03:53,501 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-18T03:03:53,501 | ^ 2025-09-18T03:03:53,501 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-18T03:03:53,502 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-18T03:03:53,502 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,502 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:53,502 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-18T03:03:53,502 | ^~ ~~~~~~~~~~~ 2025-09-18T03:03:53,502 command_set.c:247:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:53,503 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-18T03:03:53,503 | ^~~~~~~~~~ 2025-09-18T03:03:53,503 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-18T03:03:53,503 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-09-18T03:03:53,503 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,503 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:53,503 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-18T03:03:53,503 | ^~ ~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,504 command_set.c:259:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:53,504 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-18T03:03:53,504 | ^~~~~~~~~~ 2025-09-18T03:03:53,504 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-09-18T03:03:53,504 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-09-18T03:03:53,504 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,644 command_set.c: In function ‘combin_pans’: 2025-09-18T03:03:53,645 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:53,645 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-18T03:03:53,645 | ^~ ~~~~~~~~~~~ 2025-09-18T03:03:53,645 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2025-09-18T03:03:53,645 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-18T03:03:53,645 | ^~~~~~~~~~ 2025-09-18T03:03:53,646 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2025-09-18T03:03:53,646 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-18T03:03:53,646 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,646 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:53,646 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-18T03:03:53,646 | ^~ ~~~~~~~~~~ 2025-09-18T03:03:53,647 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2025-09-18T03:03:53,647 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-18T03:03:53,647 | ^~~~~~~~~~ 2025-09-18T03:03:53,647 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2025-09-18T03:03:53,647 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-18T03:03:53,647 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,648 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-18T03:03:53,648 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-18T03:03:53,648 | ^ 2025-09-18T03:03:53,648 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-18T03:03:53,648 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-18T03:03:53,648 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,864 command_set.c: In function ‘combin_subset_pans’: 2025-09-18T03:03:53,865 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:53,865 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-18T03:03:53,865 | ^~ ~~~~~~~~~~~ 2025-09-18T03:03:53,866 command_set.c:469:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:53,866 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-18T03:03:53,866 | ^~~~~~~~~~ 2025-09-18T03:03:53,866 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-18T03:03:53,866 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-18T03:03:53,866 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,867 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:53,867 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-18T03:03:53,867 | ^~ ~~~~~~~~~~ 2025-09-18T03:03:53,868 command_set.c:475:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:53,868 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-18T03:03:53,868 | ^~~~~~~~~~ 2025-09-18T03:03:53,868 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-18T03:03:53,868 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-18T03:03:53,869 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,869 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:53,869 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-18T03:03:53,869 | ^~ ~~~~~~~~~~~ 2025-09-18T03:03:53,870 command_set.c:481:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:53,870 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-18T03:03:53,870 | ^~~~~~~~~~ 2025-09-18T03:03:53,870 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-18T03:03:53,871 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-18T03:03:53,871 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,872 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:53,872 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-18T03:03:53,872 | ^~ ~~~~~~~~~~ 2025-09-18T03:03:53,872 command_set.c:512:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:53,872 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-18T03:03:53,872 | ^~~~~~~~~~ 2025-09-18T03:03:53,873 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-18T03:03:53,873 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-18T03:03:53,873 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:53,874 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-18T03:03:53,874 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-18T03:03:53,874 | ^ 2025-09-18T03:03:53,874 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-18T03:03:53,874 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-18T03:03:53,874 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:54,108 command_set.c: In function ‘grouping_genomes’: 2025-09-18T03:03:54,109 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:54,109 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-18T03:03:54,110 | ^~ ~~~~~~~~~~~ 2025-09-18T03:03:54,110 command_set.c:574:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:54,110 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-18T03:03:54,110 | ^~~~~~~~~~ 2025-09-18T03:03:54,111 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-18T03:03:54,111 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-09-18T03:03:54,111 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:54,112 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:54,112 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-18T03:03:54,112 | ^~ ~~~~~~~~~~ 2025-09-18T03:03:54,113 command_set.c:580:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:54,113 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-18T03:03:54,113 | ^~~~~~~~~~ 2025-09-18T03:03:54,113 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-18T03:03:54,114 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-09-18T03:03:54,114 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:54,115 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:54,115 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-18T03:03:54,115 | ^~ ~~~~~~~~~~~ 2025-09-18T03:03:54,116 command_set.c:612:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:54,116 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-18T03:03:54,116 | ^~~~~~~~~~ 2025-09-18T03:03:54,116 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-09-18T03:03:54,117 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-09-18T03:03:54,117 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:54,118 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-09-18T03:03:54,118 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-18T03:03:54,118 | ^~ ~~~~~~~~~~ 2025-09-18T03:03:54,119 command_set.c:634:25: note: directive argument in the range [-2147483641, 2147483646] 2025-09-18T03:03:54,119 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-18T03:03:54,119 | ^~~~~~~~~~ 2025-09-18T03:03:54,119 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-09-18T03:03:54,120 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-09-18T03:03:54,120 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:54,120 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-09-18T03:03:54,120 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-18T03:03:54,121 | ^ 2025-09-18T03:03:54,121 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-09-18T03:03:54,121 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-09-18T03:03:54,121 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-09-18T03:03:54,402 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-313/command_shuffle.o -fopenmp 2025-09-18T03:03:54,718 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c global_basic.c -o build/temp.linux-armv7l-cpython-313/global_basic.o -fopenmp 2025-09-18T03:03:54,906 global_basic.c: In function ‘organize_infile_list’: 2025-09-18T03:03:54,906 global_basic.c:195:20: error: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2025-09-18T03:03:54,906 195 | while (isspace(*buf)) buf++; 2025-09-18T03:03:54,906 | ^~~~~~~ 2025-09-18T03:03:54,906 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2025-09-18T03:03:54,906 34 | #include 2025-09-18T03:03:54,906 +++ |+#include 2025-09-18T03:03:54,907 35 | 2025-09-18T03:03:54,907 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-18T03:03:54,907 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-18T03:03:54,907 | ~~^ 2025-09-18T03:03:54,907 | | 2025-09-18T03:03:54,907 | long unsigned int 2025-09-18T03:03:54,907 | %u 2025-09-18T03:03:54,907 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-18T03:03:54,908 | ~~~~~~~~~~~ 2025-09-18T03:03:54,908 | | 2025-09-18T03:03:54,908 | size_t {aka unsigned int} 2025-09-18T03:03:54,908 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-09-18T03:03:54,908 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-09-18T03:03:54,908 | ~~^ 2025-09-18T03:03:54,909 | | 2025-09-18T03:03:54,909 | long unsigned int 2025-09-18T03:03:54,909 | %u 2025-09-18T03:03:54,909 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-09-18T03:03:54,909 | ~~~~~~~~~~~ 2025-09-18T03:03:54,909 | | 2025-09-18T03:03:54,909 | size_t {aka unsigned int} 2025-09-18T03:03:54,927 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-09-18T03:03:55,070 ERROR: python setup.py bdist_wheel exited with 1 2025-09-18T03:03:55,082 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-09-18T03:03:55,082 exec(compile('"'"''"'"''"'"' 2025-09-18T03:03:55,082 # This is -- a caller that pip uses to run setup.py 2025-09-18T03:03:55,082 # 2025-09-18T03:03:55,082 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-09-18T03:03:55,082 # import from `distutils.core` to work with newer packaging standards. 2025-09-18T03:03:55,082 # - It provides a clear error message when setuptools is not installed. 2025-09-18T03:03:55,082 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-09-18T03:03:55,082 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-09-18T03:03:55,082 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-09-18T03:03:55,082 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-09-18T03:03:55,082 import os, sys, tokenize, traceback 2025-09-18T03:03:55,082 2025-09-18T03:03:55,082 try: 2025-09-18T03:03:55,082 import setuptools 2025-09-18T03:03:55,082 except ImportError: 2025-09-18T03:03:55,082 print( 2025-09-18T03:03:55,082 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-09-18T03:03:55,082 "the build environment with exception:", 2025-09-18T03:03:55,082 file=sys.stderr, 2025-09-18T03:03:55,082 ) 2025-09-18T03:03:55,082 traceback.print_exc() 2025-09-18T03:03:55,082 sys.exit(1) 2025-09-18T03:03:55,082 2025-09-18T03:03:55,082 __file__ = %r 2025-09-18T03:03:55,082 sys.argv[0] = __file__ 2025-09-18T03:03:55,082 2025-09-18T03:03:55,082 if os.path.exists(__file__): 2025-09-18T03:03:55,082 filename = __file__ 2025-09-18T03:03:55,082 with tokenize.open(__file__) as f: 2025-09-18T03:03:55,082 setup_py_code = f.read() 2025-09-18T03:03:55,082 else: 2025-09-18T03:03:55,082 filename = "" 2025-09-18T03:03:55,082 setup_py_code = "from setuptools import setup; setup()" 2025-09-18T03:03:55,082 2025-09-18T03:03:55,082 exec(compile(setup_py_code, filename, "exec")) 2025-09-18T03:03:55,082 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-kq39oe_x/kssdutils_0a133d280d1c46679cf10e9504bd4d30/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-5ib43b1t[/] 2025-09-18T03:03:55,082 [bold magenta]cwd[/]: /tmp/pip-wheel-kq39oe_x/kssdutils_0a133d280d1c46679cf10e9504bd4d30/ 2025-09-18T03:03:55,082 Building wheel for kssdutils (setup.py): finished with status 'error' 2025-09-18T03:03:55,083 ERROR: Failed building wheel for kssdutils 2025-09-18T03:03:55,084 Running setup.py clean for kssdutils 2025-09-18T03:03:55,084 Running command python setup.py clean 2025-09-18T03:03:56,219 running clean 2025-09-18T03:03:56,363 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-09-18T03:03:56,363 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-09-18T03:03:56,363 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-09-18T03:03:56,364 'build/scripts-3.13' does not exist -- can't clean it 2025-09-18T03:03:56,364 removing 'build' 2025-09-18T03:03:56,473 Failed to build kssdutils 2025-09-18T03:03:56,474 ERROR: Failed to build one or more wheels 2025-09-18T03:03:56,475 Exception information: 2025-09-18T03:03:56,475 Traceback (most recent call last): 2025-09-18T03:03:56,475 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-09-18T03:03:56,475 status = _inner_run() 2025-09-18T03:03:56,475 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-09-18T03:03:56,475 return self.run(options, args) 2025-09-18T03:03:56,475 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-09-18T03:03:56,475 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-09-18T03:03:56,475 return func(self, options, args) 2025-09-18T03:03:56,475 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-09-18T03:03:56,475 raise CommandError("Failed to build one or more wheels") 2025-09-18T03:03:56,475 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-09-18T03:03:56,479 Removed build tracker: '/tmp/pip-build-tracker-cqhlaqfe'