2025-09-18T13:50:22,086 Created temporary directory: /tmp/pip-ephem-wheel-cache-r70ybgii 2025-09-18T13:50:22,088 Created temporary directory: /tmp/pip-build-tracker-d0br6gmq 2025-09-18T13:50:22,089 Initialized build tracking at /tmp/pip-build-tracker-d0br6gmq 2025-09-18T13:50:22,089 Created build tracker: /tmp/pip-build-tracker-d0br6gmq 2025-09-18T13:50:22,089 Entered build tracker: /tmp/pip-build-tracker-d0br6gmq 2025-09-18T13:50:22,090 Created temporary directory: /tmp/pip-wheel-gw4_4fjf 2025-09-18T13:50:22,093 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-09-18T13:50:22,096 Created temporary directory: /tmp/pip-ephem-wheel-cache-zlizbk_8 2025-09-18T13:50:22,117 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-18T13:50:22,121 2 location(s) to search for versions of biobb-adapters: 2025-09-18T13:50:22,121 * https://pypi.org/simple/biobb-adapters/ 2025-09-18T13:50:22,121 * https://www.piwheels.org/simple/biobb-adapters/ 2025-09-18T13:50:22,122 Fetching project page and analyzing links: https://pypi.org/simple/biobb-adapters/ 2025-09-18T13:50:22,123 Getting page https://pypi.org/simple/biobb-adapters/ 2025-09-18T13:50:22,124 Found index url https://pypi.org/simple 2025-09-18T13:50:22,342 Fetched page https://pypi.org/simple/biobb-adapters/ as application/vnd.pypi.simple.v1+json 2025-09-18T13:50:22,347 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/6e/48/fa9f1781406343cda29442d0ad67f8fa113f3661c8a62ae599a225e559d6/biobb_adapters-0.0.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-09-18T13:50:22,349 Found link https://files.pythonhosted.org/packages/ea/47/5763ae5620f550174e112f8231676887f996c7c7bdacb854a46860abf447/biobb_adapters-0.0.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.0.1 2025-09-18T13:50:22,349 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/0f/61/dc32b2bcfb9b1d1c8d79dc96d32671a901cd83acd1b6184772cdef43c920/biobb_adapters-0.1.2-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-09-18T13:50:22,350 Found link https://files.pythonhosted.org/packages/3e/05/6809d3f7ea93db6f0bceb198539299a5e33e6315b666d04e6e57568e7f11/biobb_adapters-0.1.2.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.1.2 2025-09-18T13:50:22,351 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/d8/34/06237256a2caa148311d8093a3f71206668f61b7cd20799b8ecf6563cbce/biobb_adapters-0.1.3-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-09-18T13:50:22,352 Found link https://files.pythonhosted.org/packages/cf/8d/f1da413a4007f55934dff4375e5d87d0b0f8fb7d84c1062157948f4392c9/biobb_adapters-0.1.3.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.1.3 2025-09-18T13:50:22,353 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/10/82/a1f366057fb6d101117ace12799cda70ce00ea9c76277d2c8e08e2fafc14/biobb_adapters-0.1.4-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-09-18T13:50:22,354 Found link https://files.pythonhosted.org/packages/fc/71/7d6174c4c56a7b38322a5a99c1d72c4f6b1115106508a887fbbda63e30d4/biobb_adapters-0.1.4.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.1.4 2025-09-18T13:50:22,354 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/af/fd/491ede12a15215794041755b568998a5ff3e8c2e1e8df7b5cec044dcdc6e/biobb_adapters-3.6.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-09-18T13:50:22,355 Found link https://files.pythonhosted.org/packages/d4/8e/89622b96a2f6255ba0313fb1eaf264343e3c7c1c2e2bcbb0544b990d32bc/biobb_adapters-3.6.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 3.6.0 2025-09-18T13:50:22,356 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/76/dc/444595a3497f5b5e9220cfb8c683abb044a799aa63249e69fa1c8c46c51b/biobb_adapters-3.6.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-09-18T13:50:22,357 Found link https://files.pythonhosted.org/packages/1c/c1/1cb78ece834741799903f6eac3dd0035297ff1c7cbb75f391ec9d5edd95b/biobb_adapters-3.6.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 3.6.1 2025-09-18T13:50:22,357 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/ba/21/064ebc456bb946b0e94829c80dfd6adc302bc65cf2d4eb774a5a1da47d90/biobb_adapters-3.7.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2025-09-18T13:50:22,358 Found link https://files.pythonhosted.org/packages/8d/bd/df127a6c4c110ffd8e6cf6a5a186fb0ddd180f7fd15f3283f5588834a605/biobb_adapters-3.7.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 3.7.0 2025-09-18T13:50:22,359 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/48/da/7e3fc1435ec04371f16bcc6c8d39f0b4c5c74195d1847a07862f23aa5c59/biobb_adapters-3.8.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7) 2025-09-18T13:50:22,360 Found link https://files.pythonhosted.org/packages/9c/cc/757e3378f55f0e6de3c20e924e551493315d7be28a5c304397faf993bab3/biobb_adapters-3.8.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7), version: 3.8.0 2025-09-18T13:50:22,360 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/cb/e7/5a1b54a0aecde3bf2fb8f891afba3f75349a0d2b0941b7984d15b06cf0e5/biobb_adapters-3.8.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7) 2025-09-18T13:50:22,361 Found link https://files.pythonhosted.org/packages/50/7a/7ce78a35dfc275fa95aaa96e3f52ff9bb12ccb5d6c47697439aa4ea737ae/biobb_adapters-3.8.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7), version: 3.8.1 2025-09-18T13:50:22,362 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/8b/ae/17f6e16c46b7e6ef350f695a2b4403b28df876ec5ffb821925132737dc45/biobb_adapters-4.0.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7,<=3.10) 2025-09-18T13:50:22,363 Link requires a different Python (3.11.2 not in: '>=3.7,<=3.10'): https://files.pythonhosted.org/packages/b9/82/2aceba1ad4acef1ed6b25f0ca5cfad7d7d313b9399a6a7262ff015e9d825/biobb_adapters-4.0.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7,<=3.10) 2025-09-18T13:50:22,363 Skipping link: 4.0.0 Requires-Python >=3.7,<=3.10: https://files.pythonhosted.org/packages/b9/82/2aceba1ad4acef1ed6b25f0ca5cfad7d7d313b9399a6a7262ff015e9d825/biobb_adapters-4.0.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7,<=3.10) 2025-09-18T13:50:22,364 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/e2/9f/7e9855633ce80e59ec2733606467433ea96f114bd5e848013f81eb3ace9e/biobb_adapters-5.1.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:<=3.12,>=3.9) 2025-09-18T13:50:22,365 Found link https://files.pythonhosted.org/packages/34/f9/4f960faa0ca763adb38734777f9133c31dd5d3df72379759905f024964c1/biobb_adapters-5.1.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:<=3.12,>=3.9), version: 5.1.0 2025-09-18T13:50:22,365 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/4d/61/3db95cd03e19560c8b66f731352f4b05e4675862e5b7bf5b63a48f5965e6/biobb_adapters-5.1.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:<=3.12,>=3.9) 2025-09-18T13:50:22,367 Found link https://files.pythonhosted.org/packages/8e/d7/2458662f9c7829a77f10314b5ea188d9e7c320e8cb54442c718a09c3a6b1/biobb_adapters-5.1.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:<=3.12,>=3.9), version: 5.1.1 2025-09-18T13:50:22,367 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/c6/88/b28ebae53a6cb6df506dab8766e73071a52d9f9dfa7e28d8d5185fd9c522/biobb_adapters-5.1.2-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:<=3.12,>=3.9) 2025-09-18T13:50:22,368 Found link https://files.pythonhosted.org/packages/67/08/7b9be21ac340b23a064d339cd08abdcd938d2656cfa8d0bb069b0596c95b/biobb_adapters-5.1.2.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:<=3.12,>=3.9), version: 5.1.2 2025-09-18T13:50:22,369 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-adapters/ 2025-09-18T13:50:22,370 Getting page https://www.piwheels.org/simple/biobb-adapters/ 2025-09-18T13:50:22,371 Found index url https://www.piwheels.org/simple 2025-09-18T13:50:22,563 Fetched page https://www.piwheels.org/simple/biobb-adapters/ as text/html 2025-09-18T13:50:22,567 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-5.1.1-py3-none-any.whl#sha256=3a7a7d6151633e45df8f60f1558275848ed3bfe9de8f3e0d7cd25e9ac52bf9cf (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3.9,<=3.12) 2025-09-18T13:50:22,568 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-5.1.0-py3-none-any.whl#sha256=3da56d6d85f10b70181e1528e87acf2ffffe23814eae39e3db91262d42166fbd (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3.9,<=3.12) 2025-09-18T13:50:22,568 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-4.0.0-py3-none-any.whl#sha256=cb9dd142294b4d6a6c6a16e59ad3af487d4f7907e1e521d4ee451a71dbb75811 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3.7,<=3.10) 2025-09-18T13:50:22,569 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-3.8.1-py3-none-any.whl#sha256=7a3438d481b9100a9515c17f6a2c639a03c777ef4bfcf0cf98a0402e52e7361e (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3.7) 2025-09-18T13:50:22,570 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-3.8.0-py3-none-any.whl#sha256=b292fb32ccd27073b7e6361b3aba9b76a5c482a106f56dab11448ab7f34019e2 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3.7) 2025-09-18T13:50:22,570 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-3.7.0-py3-none-any.whl#sha256=87c2d259b7048ea5f5b42b1af9b4ec0ebeea79a3bf75d12b74e150a6912939ec (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-09-18T13:50:22,571 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-3.6.1-py3-none-any.whl#sha256=8260317060e532fea600980ac833bd79b07ac5df283349b573221a8a7c732506 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-09-18T13:50:22,571 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-3.6.0-py3-none-any.whl#sha256=deec3d977dc1d2088be8a28197d1bd98650e1baba87d45b5d2ef7fed41fa671c (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-09-18T13:50:22,572 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-0.1.4-py3-none-any.whl#sha256=f26f2aaffd33d22a606ba569276dcfd04bce56a2e8ab8e382acc2646b01f3a85 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-09-18T13:50:22,573 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-0.1.3-py3-none-any.whl#sha256=3d9b62abc78a28b54c050954fd6ee0e3a1fed164a3d3b8d6eadadd0b25b775d2 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-09-18T13:50:22,573 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-0.1.2-py3-none-any.whl#sha256=0acb06de199e0ac06376a0ffe5e2071445ee7a36fce431a17edc27fdf218492d (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-09-18T13:50:22,574 Skipping link: No binaries permitted for biobb-adapters: https://archive1.piwheels.org/simple/biobb-adapters/biobb_adapters-0.0.1-py3-none-any.whl#sha256=cf710e8eb6bc1256248c69baea53ce2727fc707766e31bcf25fc9b9cfe66745a (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2025-09-18T13:50:22,574 Skipping link: not a file: https://www.piwheels.org/simple/biobb-adapters/ 2025-09-18T13:50:22,575 Skipping link: not a file: https://pypi.org/simple/biobb-adapters/ 2025-09-18T13:50:22,594 Given no hashes to check 1 links for project 'biobb-adapters': discarding no candidates 2025-09-18T13:50:22,612 Collecting biobb-adapters==5.1.2 2025-09-18T13:50:22,614 Created temporary directory: /tmp/pip-unpack-d_e3u9p2 2025-09-18T13:50:22,899 Downloading biobb_adapters-5.1.2.tar.gz (118 kB) 2025-09-18T13:50:24,015 Added biobb-adapters==5.1.2 from https://files.pythonhosted.org/packages/67/08/7b9be21ac340b23a064d339cd08abdcd938d2656cfa8d0bb069b0596c95b/biobb_adapters-5.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-d0br6gmq' 2025-09-18T13:50:24,016 Running setup.py (path:/tmp/pip-wheel-gw4_4fjf/biobb-adapters_4921732a91344e9bab3380702da7b86f/setup.py) egg_info for package biobb-adapters 2025-09-18T13:50:24,017 Created temporary directory: /tmp/pip-pip-egg-info-xjqpmvmx 2025-09-18T13:50:24,017 Preparing metadata (setup.py): started 2025-09-18T13:50:24,019 Running command python setup.py egg_info 2025-09-18T13:50:24,643 Warning: 'classifiers' should be a list, got type 'tuple' 2025-09-18T13:50:24,941 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-18T13:50:24,941 !! 2025-09-18T13:50:24,943 ******************************************************************************** 2025-09-18T13:50:24,943 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-18T13:50:24,944 License :: OSI Approved :: Apache Software License 2025-09-18T13:50:24,946 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-18T13:50:24,946 ******************************************************************************** 2025-09-18T13:50:24,947 !! 2025-09-18T13:50:24,948 self._finalize_license_expression() 2025-09-18T13:50:24,971 running egg_info 2025-09-18T13:50:24,999 creating /tmp/pip-pip-egg-info-xjqpmvmx/biobb_adapters.egg-info 2025-09-18T13:50:25,000 writing /tmp/pip-pip-egg-info-xjqpmvmx/biobb_adapters.egg-info/PKG-INFO 2025-09-18T13:50:25,004 writing dependency_links to /tmp/pip-pip-egg-info-xjqpmvmx/biobb_adapters.egg-info/dependency_links.txt 2025-09-18T13:50:25,006 writing requirements to /tmp/pip-pip-egg-info-xjqpmvmx/biobb_adapters.egg-info/requires.txt 2025-09-18T13:50:25,007 writing top-level names to /tmp/pip-pip-egg-info-xjqpmvmx/biobb_adapters.egg-info/top_level.txt 2025-09-18T13:50:25,008 writing manifest file '/tmp/pip-pip-egg-info-xjqpmvmx/biobb_adapters.egg-info/SOURCES.txt' 2025-09-18T13:50:25,155 reading manifest file '/tmp/pip-pip-egg-info-xjqpmvmx/biobb_adapters.egg-info/SOURCES.txt' 2025-09-18T13:50:25,157 reading manifest template 'MANIFEST.in' 2025-09-18T13:50:25,437 adding license file 'LICENSE' 2025-09-18T13:50:25,463 writing manifest file '/tmp/pip-pip-egg-info-xjqpmvmx/biobb_adapters.egg-info/SOURCES.txt' 2025-09-18T13:50:25,569 Preparing metadata (setup.py): finished with status 'done' 2025-09-18T13:50:25,573 Source in /tmp/pip-wheel-gw4_4fjf/biobb-adapters_4921732a91344e9bab3380702da7b86f has version 5.1.2, which satisfies requirement biobb-adapters==5.1.2 from https://files.pythonhosted.org/packages/67/08/7b9be21ac340b23a064d339cd08abdcd938d2656cfa8d0bb069b0596c95b/biobb_adapters-5.1.2.tar.gz 2025-09-18T13:50:25,574 Removed biobb-adapters==5.1.2 from https://files.pythonhosted.org/packages/67/08/7b9be21ac340b23a064d339cd08abdcd938d2656cfa8d0bb069b0596c95b/biobb_adapters-5.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-d0br6gmq' 2025-09-18T13:50:25,580 Created temporary directory: /tmp/pip-unpack-3ww3fivf 2025-09-18T13:50:25,581 Building wheels for collected packages: biobb-adapters 2025-09-18T13:50:25,585 Created temporary directory: /tmp/pip-wheel-4vhcm5u8 2025-09-18T13:50:25,586 Building wheel for biobb-adapters (setup.py): started 2025-09-18T13:50:25,587 Destination directory: /tmp/pip-wheel-4vhcm5u8 2025-09-18T13:50:25,588 Running command python setup.py bdist_wheel 2025-09-18T13:50:26,146 Warning: 'classifiers' should be a list, got type 'tuple' 2025-09-18T13:50:26,433 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-18T13:50:26,434 !! 2025-09-18T13:50:26,435 ******************************************************************************** 2025-09-18T13:50:26,435 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-18T13:50:26,436 License :: OSI Approved :: Apache Software License 2025-09-18T13:50:26,438 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-18T13:50:26,438 ******************************************************************************** 2025-09-18T13:50:26,439 !! 2025-09-18T13:50:26,440 self._finalize_license_expression() 2025-09-18T13:50:26,440 running bdist_wheel 2025-09-18T13:50:26,568 running build 2025-09-18T13:50:26,568 running build_py 2025-09-18T13:50:26,603 creating build/lib/biobb_adapters 2025-09-18T13:50:26,605 copying biobb_adapters/__init__.py -> build/lib/biobb_adapters 2025-09-18T13:50:26,608 creating build/lib/biobb_adapters/pycompss 2025-09-18T13:50:26,609 copying biobb_adapters/pycompss/__init__.py -> build/lib/biobb_adapters/pycompss 2025-09-18T13:50:26,611 creating build/lib/biobb_adapters/pycompss/biobb_md 2025-09-18T13:50:26,612 copying biobb_adapters/pycompss/biobb_md/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_md 2025-09-18T13:50:26,614 creating build/lib/biobb_adapters/pycompss/biobb_vs 2025-09-18T13:50:26,615 copying biobb_adapters/pycompss/biobb_vs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs 2025-09-18T13:50:26,617 creating build/lib/biobb_adapters/pycompss/biobb_flexdyn 2025-09-18T13:50:26,618 copying biobb_adapters/pycompss/biobb_flexdyn/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_flexdyn 2025-09-18T13:50:26,620 creating build/lib/biobb_adapters/pycompss/biobb_pdb_tools 2025-09-18T13:50:26,621 copying biobb_adapters/pycompss/biobb_pdb_tools/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools 2025-09-18T13:50:26,623 creating build/lib/biobb_adapters/pycompss/biobb_mem 2025-09-18T13:50:26,624 copying biobb_adapters/pycompss/biobb_mem/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_mem 2025-09-18T13:50:26,626 creating build/lib/biobb_adapters/pycompss/biobb_haddock 2025-09-18T13:50:26,627 copying biobb_adapters/pycompss/biobb_haddock/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_haddock 2025-09-18T13:50:26,629 creating build/lib/biobb_adapters/pycompss/biobb_commons 2025-09-18T13:50:26,630 copying biobb_adapters/pycompss/biobb_commons/task_config.py -> build/lib/biobb_adapters/pycompss/biobb_commons 2025-09-18T13:50:26,632 copying biobb_adapters/pycompss/biobb_commons/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_commons 2025-09-18T13:50:26,634 creating build/lib/biobb_adapters/pycompss/biobb_chemistry 2025-09-18T13:50:26,635 copying biobb_adapters/pycompss/biobb_chemistry/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry 2025-09-18T13:50:26,637 creating build/lib/biobb_adapters/pycompss/biobb_cp2k 2025-09-18T13:50:26,638 copying biobb_adapters/pycompss/biobb_cp2k/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_cp2k 2025-09-18T13:50:26,640 creating build/lib/biobb_adapters/pycompss/biobb_gromacs 2025-09-18T13:50:26,641 copying biobb_adapters/pycompss/biobb_gromacs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_gromacs 2025-09-18T13:50:26,643 creating build/lib/biobb_adapters/pycompss/biobb_ml 2025-09-18T13:50:26,644 copying biobb_adapters/pycompss/biobb_ml/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml 2025-09-18T13:50:26,646 creating build/lib/biobb_adapters/pycompss/biobb_cmip 2025-09-18T13:50:26,647 copying biobb_adapters/pycompss/biobb_cmip/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_cmip 2025-09-18T13:50:26,649 creating build/lib/biobb_adapters/pycompss/biobb_analysis 2025-09-18T13:50:26,650 copying biobb_adapters/pycompss/biobb_analysis/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_analysis 2025-09-18T13:50:26,652 creating build/lib/biobb_adapters/pycompss/biobb_model 2025-09-18T13:50:26,653 copying biobb_adapters/pycompss/biobb_model/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_model 2025-09-18T13:50:26,655 creating build/lib/biobb_adapters/pycompss/biobb_pytorch 2025-09-18T13:50:26,656 copying biobb_adapters/pycompss/biobb_pytorch/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_pytorch 2025-09-18T13:50:26,658 creating build/lib/biobb_adapters/pycompss/biobb_dna 2025-09-18T13:50:26,659 copying biobb_adapters/pycompss/biobb_dna/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_dna 2025-09-18T13:50:26,661 creating build/lib/biobb_adapters/pycompss/biobb_io 2025-09-18T13:50:26,662 copying biobb_adapters/pycompss/biobb_io/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_io 2025-09-18T13:50:26,665 creating build/lib/biobb_adapters/pycompss/biobb_pmx 2025-09-18T13:50:26,666 copying biobb_adapters/pycompss/biobb_pmx/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_pmx 2025-09-18T13:50:26,668 creating build/lib/biobb_adapters/pycompss/biobb_godmd 2025-09-18T13:50:26,669 copying biobb_adapters/pycompss/biobb_godmd/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_godmd 2025-09-18T13:50:26,671 creating build/lib/biobb_adapters/pycompss/biobb_bioml 2025-09-18T13:50:26,672 copying biobb_adapters/pycompss/biobb_bioml/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_bioml 2025-09-18T13:50:26,674 creating build/lib/biobb_adapters/pycompss/biobb_flexserv 2025-09-18T13:50:26,675 copying biobb_adapters/pycompss/biobb_flexserv/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_flexserv 2025-09-18T13:50:26,677 creating build/lib/biobb_adapters/pycompss/biobb_asitedesign 2025-09-18T13:50:26,678 copying biobb_adapters/pycompss/biobb_asitedesign/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_asitedesign 2025-09-18T13:50:26,680 creating build/lib/biobb_adapters/pycompss/biobb_amber 2025-09-18T13:50:26,681 copying biobb_adapters/pycompss/biobb_amber/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber 2025-09-18T13:50:26,683 creating build/lib/biobb_adapters/pycompss/biobb_structure_utils 2025-09-18T13:50:26,684 copying biobb_adapters/pycompss/biobb_structure_utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils 2025-09-18T13:50:26,687 creating build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-09-18T13:50:26,688 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-09-18T13:50:26,690 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-09-18T13:50:26,692 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand_pc.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-09-18T13:50:26,694 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-09-18T13:50:26,695 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop_pc.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-09-18T13:50:26,697 creating build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:26,698 copying biobb_adapters/pycompss/biobb_md/gromacs/gmxselect.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:26,700 copying biobb_adapters/pycompss/biobb_md/gromacs/solvate.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:26,702 copying biobb_adapters/pycompss/biobb_md/gromacs/genion.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:26,704 copying biobb_adapters/pycompss/biobb_md/gromacs/grompp.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:26,706 copying biobb_adapters/pycompss/biobb_md/gromacs/editconf.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:26,708 copying biobb_adapters/pycompss/biobb_md/gromacs/pdb2gmx.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:26,710 copying biobb_adapters/pycompss/biobb_md/gromacs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:26,711 copying biobb_adapters/pycompss/biobb_md/gromacs/genrestr.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:26,713 copying biobb_adapters/pycompss/biobb_md/gromacs/make_ndx.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:26,715 copying biobb_adapters/pycompss/biobb_md/gromacs/grompp_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:26,717 copying biobb_adapters/pycompss/biobb_md/gromacs/mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:26,720 creating build/lib/biobb_adapters/pycompss/biobb_vs/vina 2025-09-18T13:50:26,722 copying biobb_adapters/pycompss/biobb_vs/vina/autodock_vina.py -> build/lib/biobb_adapters/pycompss/biobb_vs/vina 2025-09-18T13:50:26,942 copying biobb_adapters/pycompss/biobb_vs/vina/autodock_vina_run.py -> build/lib/biobb_adapters/pycompss/biobb_vs/vina 2025-09-18T13:50:26,944 copying biobb_adapters/pycompss/biobb_vs/vina/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs/vina 2025-09-18T13:50:26,946 creating build/lib/biobb_adapters/pycompss/biobb_vs/utils 2025-09-18T13:50:26,947 copying biobb_adapters/pycompss/biobb_vs/utils/bindingsite.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2025-09-18T13:50:26,949 copying biobb_adapters/pycompss/biobb_vs/utils/box_residues.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2025-09-18T13:50:26,951 copying biobb_adapters/pycompss/biobb_vs/utils/extract_model_pdbqt.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2025-09-18T13:50:26,953 copying biobb_adapters/pycompss/biobb_vs/utils/box.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2025-09-18T13:50:26,955 copying biobb_adapters/pycompss/biobb_vs/utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2025-09-18T13:50:26,957 creating build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2025-09-18T13:50:26,958 copying biobb_adapters/pycompss/biobb_vs/fpocket/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2025-09-18T13:50:26,959 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2025-09-18T13:50:26,961 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_run.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2025-09-18T13:50:26,963 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_select.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2025-09-18T13:50:26,965 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_filter.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2025-09-18T13:50:26,967 creating build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-09-18T13:50:26,968 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-09-18T13:50:26,970 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-09-18T13:50:26,972 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-09-18T13:50:26,973 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-09-18T13:50:26,975 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-09-18T13:50:26,977 creating build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:26,978 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:26,980 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:26,982 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:26,984 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:26,986 copying biobb_adapters/pycompss/biobb_chemistry/acpype/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:26,987 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:26,989 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:26,991 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_convert_amber_to_gmx.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:26,993 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:26,995 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:26,997 creating build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:26,998 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:27,000 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:27,002 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:27,004 copying biobb_adapters/pycompss/biobb_chemistry/babelm/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:27,006 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:27,007 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:27,009 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:27,011 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:27,013 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:27,015 creating build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-09-18T13:50:27,018 copying biobb_adapters/pycompss/biobb_ml/utils/pairwise_comparison.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-09-18T13:50:27,020 copying biobb_adapters/pycompss/biobb_ml/utils/dummy_variables.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-09-18T13:50:27,022 copying biobb_adapters/pycompss/biobb_ml/utils/scale_columns.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-09-18T13:50:27,023 copying biobb_adapters/pycompss/biobb_ml/utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-09-18T13:50:27,026 copying biobb_adapters/pycompss/biobb_ml/utils/map_variables.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-09-18T13:50:27,028 copying biobb_adapters/pycompss/biobb_ml/utils/dendrogram.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-09-18T13:50:27,031 copying biobb_adapters/pycompss/biobb_ml/utils/correlation_matrix.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-09-18T13:50:27,034 copying biobb_adapters/pycompss/biobb_ml/utils/drop_columns.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2025-09-18T13:50:27,036 creating build/lib/biobb_adapters/pycompss/biobb_ml/regression 2025-09-18T13:50:27,037 copying biobb_adapters/pycompss/biobb_ml/regression/regression_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2025-09-18T13:50:27,039 copying biobb_adapters/pycompss/biobb_ml/regression/polynomial_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2025-09-18T13:50:27,041 copying biobb_adapters/pycompss/biobb_ml/regression/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2025-09-18T13:50:27,043 copying biobb_adapters/pycompss/biobb_ml/regression/linear_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2025-09-18T13:50:27,045 copying biobb_adapters/pycompss/biobb_ml/regression/random_forest_regressor.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2025-09-18T13:50:27,048 creating build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-09-18T13:50:27,049 copying biobb_adapters/pycompss/biobb_ml/classification/decision_tree.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-09-18T13:50:27,051 copying biobb_adapters/pycompss/biobb_ml/classification/k_neighbors_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-09-18T13:50:27,052 copying biobb_adapters/pycompss/biobb_ml/classification/k_neighbors.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-09-18T13:50:27,054 copying biobb_adapters/pycompss/biobb_ml/classification/support_vector_machine.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-09-18T13:50:27,056 copying biobb_adapters/pycompss/biobb_ml/classification/logistic_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-09-18T13:50:27,058 copying biobb_adapters/pycompss/biobb_ml/classification/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-09-18T13:50:27,060 copying biobb_adapters/pycompss/biobb_ml/classification/random_forest_classifier.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-09-18T13:50:27,062 copying biobb_adapters/pycompss/biobb_ml/classification/classification_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2025-09-18T13:50:27,064 creating build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:27,065 copying biobb_adapters/pycompss/biobb_ml/clustering/k_means.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:27,067 copying biobb_adapters/pycompss/biobb_ml/clustering/spectral_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:27,069 copying biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:27,070 copying biobb_adapters/pycompss/biobb_ml/clustering/dbscan.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:27,072 copying biobb_adapters/pycompss/biobb_ml/clustering/clustering_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:27,074 copying biobb_adapters/pycompss/biobb_ml/clustering/k_means_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:27,076 copying biobb_adapters/pycompss/biobb_ml/clustering/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:27,078 copying biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_clustering.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:27,079 copying biobb_adapters/pycompss/biobb_ml/clustering/spectral_clustering.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:27,082 creating build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-09-18T13:50:27,083 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/principal_component.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-09-18T13:50:27,084 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_components.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-09-18T13:50:27,086 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-09-18T13:50:27,088 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-09-18T13:50:27,090 creating build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-09-18T13:50:27,091 copying biobb_adapters/pycompss/biobb_ml/neural_networks/classification_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-09-18T13:50:27,093 copying biobb_adapters/pycompss/biobb_ml/neural_networks/recurrent_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-09-18T13:50:27,095 copying biobb_adapters/pycompss/biobb_ml/neural_networks/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-09-18T13:50:27,096 copying biobb_adapters/pycompss/biobb_ml/neural_networks/autoencoder_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-09-18T13:50:27,098 copying biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_decode.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-09-18T13:50:27,100 copying biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-09-18T13:50:27,102 copying biobb_adapters/pycompss/biobb_ml/neural_networks/regression_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-09-18T13:50:27,106 creating build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2025-09-18T13:50:27,107 copying biobb_adapters/pycompss/biobb_ml/resampling/oversampling.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2025-09-18T13:50:27,109 copying biobb_adapters/pycompss/biobb_ml/resampling/resampling.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2025-09-18T13:50:27,112 copying biobb_adapters/pycompss/biobb_ml/resampling/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2025-09-18T13:50:27,114 copying biobb_adapters/pycompss/biobb_ml/resampling/undersampling.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2025-09-18T13:50:27,117 creating build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:27,118 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip_prepare_structure.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:27,121 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip_prepare_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:27,123 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:27,125 copying biobb_adapters/pycompss/biobb_cmip/cmip/titration.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:27,127 copying biobb_adapters/pycompss/biobb_cmip/cmip/ignore_residues.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:27,129 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip_ignore_residues.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:27,130 copying biobb_adapters/pycompss/biobb_cmip/cmip/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:27,132 copying biobb_adapters/pycompss/biobb_cmip/cmip/prepare_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:27,134 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip_run.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:27,137 copying biobb_adapters/pycompss/biobb_cmip/cmip/prepare_structure.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:27,139 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip_titration.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:27,142 creating build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:27,143 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:27,145 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:27,148 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:27,150 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:27,153 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:27,155 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:27,157 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:27,159 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:27,162 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:27,164 copying biobb_adapters/pycompss/biobb_analysis/gromacs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:27,165 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:27,168 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:27,170 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:27,172 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:27,174 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:27,177 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:27,180 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:27,214 creating build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,214 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,217 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,218 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,220 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,222 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,224 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,226 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,228 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,230 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,231 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,233 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,236 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,240 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,243 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,245 copying biobb_adapters/pycompss/biobb_analysis/ambertools/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,247 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,249 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,252 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,253 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,255 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,257 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,259 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,262 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,264 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,267 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:27,271 creating build/lib/biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:27,272 copying biobb_adapters/pycompss/biobb_model/model/checking_log.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:27,275 copying biobb_adapters/pycompss/biobb_model/model/mutate_pc.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:27,278 copying biobb_adapters/pycompss/biobb_model/model/fix_ssbonds.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:27,281 copying biobb_adapters/pycompss/biobb_model/model/fix_chirality.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:27,284 copying biobb_adapters/pycompss/biobb_model/model/fix_side_chain.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:27,286 copying biobb_adapters/pycompss/biobb_model/model/fix_amides.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:27,289 copying biobb_adapters/pycompss/biobb_model/model/fix_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:27,291 copying biobb_adapters/pycompss/biobb_model/model/fix_altlocs.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:27,293 copying biobb_adapters/pycompss/biobb_model/model/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:27,295 copying biobb_adapters/pycompss/biobb_model/model/fix_side_chain_pc.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:27,298 copying biobb_adapters/pycompss/biobb_model/model/fix_backbone.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:27,300 copying biobb_adapters/pycompss/biobb_model/model/mutate.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:27,304 creating build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,305 copying biobb_adapters/pycompss/biobb_io/api/mmcif.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,308 copying biobb_adapters/pycompss/biobb_io/api/binding_site.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,311 copying biobb_adapters/pycompss/biobb_io/api/alphafold.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,313 copying biobb_adapters/pycompss/biobb_io/api/ligand.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,316 copying biobb_adapters/pycompss/biobb_io/api/mddb.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,318 copying biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,321 copying biobb_adapters/pycompss/biobb_io/api/ligand_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,324 copying biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_search.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,327 copying biobb_adapters/pycompss/biobb_io/api/memprotmd_sim.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,329 copying biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_list.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,332 copying biobb_adapters/pycompss/biobb_io/api/api_binding_site.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,335 copying biobb_adapters/pycompss/biobb_io/api/pdb_variants_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,337 copying biobb_adapters/pycompss/biobb_io/api/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,340 copying biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,342 copying biobb_adapters/pycompss/biobb_io/api/ideal_sdf.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,345 copying biobb_adapters/pycompss/biobb_io/api/pdb.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,348 copying biobb_adapters/pycompss/biobb_io/api/pdb_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,351 copying biobb_adapters/pycompss/biobb_io/api/canonical_fasta.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,354 copying biobb_adapters/pycompss/biobb_io/api/pdb_variants.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,357 copying biobb_adapters/pycompss/biobb_io/api/structure_info.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,360 copying biobb_adapters/pycompss/biobb_io/api/drugbank.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:27,363 creating build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-09-18T13:50:27,364 copying biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber_run.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-09-18T13:50:27,366 copying biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-09-18T13:50:27,368 copying biobb_adapters/pycompss/biobb_amber/pdb4amber/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-09-18T13:50:27,370 creating build/lib/biobb_adapters/pycompss/biobb_amber/pmemd 2025-09-18T13:50:27,371 copying biobb_adapters/pycompss/biobb_amber/pmemd/pmemd_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pmemd 2025-09-18T13:50:27,373 copying biobb_adapters/pycompss/biobb_amber/pmemd/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pmemd 2025-09-18T13:50:27,375 creating build/lib/biobb_adapters/pycompss/biobb_amber/process 2025-09-18T13:50:27,376 copying biobb_adapters/pycompss/biobb_amber/process/process_mdout.py -> build/lib/biobb_adapters/pycompss/biobb_amber/process 2025-09-18T13:50:27,378 copying biobb_adapters/pycompss/biobb_amber/process/process_minout.py -> build/lib/biobb_adapters/pycompss/biobb_amber/process 2025-09-18T13:50:27,380 copying biobb_adapters/pycompss/biobb_amber/process/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/process 2025-09-18T13:50:27,382 creating build/lib/biobb_adapters/pycompss/biobb_amber/leap 2025-09-18T13:50:27,383 copying biobb_adapters/pycompss/biobb_amber/leap/leap_gen_top.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2025-09-18T13:50:27,385 copying biobb_adapters/pycompss/biobb_amber/leap/leap_build_linear_structure.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2025-09-18T13:50:27,388 copying biobb_adapters/pycompss/biobb_amber/leap/leap_solvate.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2025-09-18T13:50:27,390 copying biobb_adapters/pycompss/biobb_amber/leap/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2025-09-18T13:50:27,391 copying biobb_adapters/pycompss/biobb_amber/leap/leap_add_ions.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2025-09-18T13:50:27,394 creating build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj 2025-09-18T13:50:27,395 copying biobb_adapters/pycompss/biobb_amber/cpptraj/cpptraj_randomize_ions.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj 2025-09-18T13:50:27,397 copying biobb_adapters/pycompss/biobb_amber/cpptraj/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj 2025-09-18T13:50:27,399 creating build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2025-09-18T13:50:27,400 copying biobb_adapters/pycompss/biobb_amber/cphstats/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2025-09-18T13:50:27,402 copying biobb_adapters/pycompss/biobb_amber/cphstats/cestats_run.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2025-09-18T13:50:27,404 copying biobb_adapters/pycompss/biobb_amber/cphstats/cphstats_run.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2025-09-18T13:50:27,406 creating build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb 2025-09-18T13:50:27,407 copying biobb_adapters/pycompss/biobb_amber/ambpdb/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb 2025-09-18T13:50:27,408 copying biobb_adapters/pycompss/biobb_amber/ambpdb/amber_to_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb 2025-09-18T13:50:27,411 creating build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2025-09-18T13:50:27,412 copying biobb_adapters/pycompss/biobb_amber/parmed/parmed_cpinutil.py -> build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2025-09-18T13:50:27,414 copying biobb_adapters/pycompss/biobb_amber/parmed/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2025-09-18T13:50:27,416 copying biobb_adapters/pycompss/biobb_amber/parmed/parmed_hmassrepartition.py -> build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2025-09-18T13:50:27,418 creating build/lib/biobb_adapters/pycompss/biobb_amber/sander 2025-09-18T13:50:27,419 copying biobb_adapters/pycompss/biobb_amber/sander/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/sander 2025-09-18T13:50:27,421 copying biobb_adapters/pycompss/biobb_amber/sander/sander_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_amber/sander 2025-09-18T13:50:27,423 creating build/lib/biobb_adapters/pycompss/biobb_amber/nab 2025-09-18T13:50:27,424 copying biobb_adapters/pycompss/biobb_amber/nab/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/nab 2025-09-18T13:50:27,426 copying biobb_adapters/pycompss/biobb_amber/nab/nab_build_dna_structure.py -> build/lib/biobb_adapters/pycompss/biobb_amber/nab 2025-09-18T13:50:27,430 creating build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,431 copying biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,433 copying biobb_adapters/pycompss/biobb_structure_utils/utils/structure_check.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,435 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,437 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,439 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_molecules.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,441 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,443 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,445 copying biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structure.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,448 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,451 copying biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,453 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,455 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,457 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,459 copying biobb_adapters/pycompss/biobb_structure_utils/utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,460 copying biobb_adapters/pycompss/biobb_structure_utils/utils/closest_residues.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,463 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,465 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,467 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_residues.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,469 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_molecule.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,472 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,474 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,477 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,479 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,481 copying biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structures_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,483 copying biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,485 copying biobb_adapters/pycompss/biobb_structure_utils/utils/str_check_add_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,487 copying biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:27,489 running egg_info 2025-09-18T13:50:27,731 writing biobb_adapters.egg-info/PKG-INFO 2025-09-18T13:50:27,735 writing dependency_links to biobb_adapters.egg-info/dependency_links.txt 2025-09-18T13:50:27,737 writing requirements to biobb_adapters.egg-info/requires.txt 2025-09-18T13:50:27,738 writing top-level names to biobb_adapters.egg-info/top_level.txt 2025-09-18T13:50:27,827 reading manifest file 'biobb_adapters.egg-info/SOURCES.txt' 2025-09-18T13:50:27,865 reading manifest template 'MANIFEST.in' 2025-09-18T13:50:28,136 adding license file 'LICENSE' 2025-09-18T13:50:28,183 writing manifest file 'biobb_adapters.egg-info/SOURCES.txt' 2025-09-18T13:50:28,186 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_amber' is absent from the `packages` configuration. 2025-09-18T13:50:28,187 !! 2025-09-18T13:50:28,188 ******************************************************************************** 2025-09-18T13:50:28,188 ############################ 2025-09-18T13:50:28,188 # Package would be ignored # 2025-09-18T13:50:28,189 ############################ 2025-09-18T13:50:28,190 Python recognizes 'biobb_adapters.cwl.biobb_amber' as an importable package[^1], 2025-09-18T13:50:28,190 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,191 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,192 package, please make sure that 'biobb_adapters.cwl.biobb_amber' is explicitly added 2025-09-18T13:50:28,192 to the `packages` configuration field. 2025-09-18T13:50:28,193 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,193 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,194 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,194 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,195 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,196 If you don't want 'biobb_adapters.cwl.biobb_amber' to be distributed and are 2025-09-18T13:50:28,196 already explicitly excluding 'biobb_adapters.cwl.biobb_amber' via 2025-09-18T13:50:28,197 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,197 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,198 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,198 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,199 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,201 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,201 even if it does not contain any `.py` files. 2025-09-18T13:50:28,202 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,202 directory, all directories are treated like packages. 2025-09-18T13:50:28,203 ******************************************************************************** 2025-09-18T13:50:28,203 !! 2025-09-18T13:50:28,204 check.warn(importable) 2025-09-18T13:50:28,204 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_analysis' is absent from the `packages` configuration. 2025-09-18T13:50:28,205 !! 2025-09-18T13:50:28,206 ******************************************************************************** 2025-09-18T13:50:28,206 ############################ 2025-09-18T13:50:28,207 # Package would be ignored # 2025-09-18T13:50:28,208 ############################ 2025-09-18T13:50:28,208 Python recognizes 'biobb_adapters.cwl.biobb_analysis' as an importable package[^1], 2025-09-18T13:50:28,209 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,210 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,210 package, please make sure that 'biobb_adapters.cwl.biobb_analysis' is explicitly added 2025-09-18T13:50:28,211 to the `packages` configuration field. 2025-09-18T13:50:28,212 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,212 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,212 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,213 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,214 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,215 If you don't want 'biobb_adapters.cwl.biobb_analysis' to be distributed and are 2025-09-18T13:50:28,216 already explicitly excluding 'biobb_adapters.cwl.biobb_analysis' via 2025-09-18T13:50:28,216 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,217 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,217 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,218 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,219 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,220 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,220 even if it does not contain any `.py` files. 2025-09-18T13:50:28,220 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,221 directory, all directories are treated like packages. 2025-09-18T13:50:28,221 ******************************************************************************** 2025-09-18T13:50:28,222 !! 2025-09-18T13:50:28,222 check.warn(importable) 2025-09-18T13:50:28,223 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_chemistry' is absent from the `packages` configuration. 2025-09-18T13:50:28,223 !! 2025-09-18T13:50:28,224 ******************************************************************************** 2025-09-18T13:50:28,224 ############################ 2025-09-18T13:50:28,225 # Package would be ignored # 2025-09-18T13:50:28,225 ############################ 2025-09-18T13:50:28,225 Python recognizes 'biobb_adapters.cwl.biobb_chemistry' as an importable package[^1], 2025-09-18T13:50:28,226 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,227 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,227 package, please make sure that 'biobb_adapters.cwl.biobb_chemistry' is explicitly added 2025-09-18T13:50:28,228 to the `packages` configuration field. 2025-09-18T13:50:28,228 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,229 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,229 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,230 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,231 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,232 If you don't want 'biobb_adapters.cwl.biobb_chemistry' to be distributed and are 2025-09-18T13:50:28,233 already explicitly excluding 'biobb_adapters.cwl.biobb_chemistry' via 2025-09-18T13:50:28,233 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,234 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,234 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,235 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,236 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,237 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,237 even if it does not contain any `.py` files. 2025-09-18T13:50:28,238 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,238 directory, all directories are treated like packages. 2025-09-18T13:50:28,239 ******************************************************************************** 2025-09-18T13:50:28,240 !! 2025-09-18T13:50:28,240 check.warn(importable) 2025-09-18T13:50:28,240 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_cmip' is absent from the `packages` configuration. 2025-09-18T13:50:28,241 !! 2025-09-18T13:50:28,242 ******************************************************************************** 2025-09-18T13:50:28,242 ############################ 2025-09-18T13:50:28,243 # Package would be ignored # 2025-09-18T13:50:28,243 ############################ 2025-09-18T13:50:28,243 Python recognizes 'biobb_adapters.cwl.biobb_cmip' as an importable package[^1], 2025-09-18T13:50:28,244 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,244 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,245 package, please make sure that 'biobb_adapters.cwl.biobb_cmip' is explicitly added 2025-09-18T13:50:28,245 to the `packages` configuration field. 2025-09-18T13:50:28,246 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,246 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,246 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,247 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,248 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,249 If you don't want 'biobb_adapters.cwl.biobb_cmip' to be distributed and are 2025-09-18T13:50:28,249 already explicitly excluding 'biobb_adapters.cwl.biobb_cmip' via 2025-09-18T13:50:28,249 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,250 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,250 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,251 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,252 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,253 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,253 even if it does not contain any `.py` files. 2025-09-18T13:50:28,254 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,254 directory, all directories are treated like packages. 2025-09-18T13:50:28,255 ******************************************************************************** 2025-09-18T13:50:28,256 !! 2025-09-18T13:50:28,256 check.warn(importable) 2025-09-18T13:50:28,256 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_cp2k' is absent from the `packages` configuration. 2025-09-18T13:50:28,257 !! 2025-09-18T13:50:28,258 ******************************************************************************** 2025-09-18T13:50:28,258 ############################ 2025-09-18T13:50:28,259 # Package would be ignored # 2025-09-18T13:50:28,259 ############################ 2025-09-18T13:50:28,259 Python recognizes 'biobb_adapters.cwl.biobb_cp2k' as an importable package[^1], 2025-09-18T13:50:28,260 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,261 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,261 package, please make sure that 'biobb_adapters.cwl.biobb_cp2k' is explicitly added 2025-09-18T13:50:28,262 to the `packages` configuration field. 2025-09-18T13:50:28,263 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,263 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,264 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,265 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,266 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,266 If you don't want 'biobb_adapters.cwl.biobb_cp2k' to be distributed and are 2025-09-18T13:50:28,266 already explicitly excluding 'biobb_adapters.cwl.biobb_cp2k' via 2025-09-18T13:50:28,267 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,267 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,267 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,268 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,269 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,270 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,270 even if it does not contain any `.py` files. 2025-09-18T13:50:28,271 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,271 directory, all directories are treated like packages. 2025-09-18T13:50:28,271 ******************************************************************************** 2025-09-18T13:50:28,272 !! 2025-09-18T13:50:28,273 check.warn(importable) 2025-09-18T13:50:28,273 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_dna' is absent from the `packages` configuration. 2025-09-18T13:50:28,274 !! 2025-09-18T13:50:28,274 ******************************************************************************** 2025-09-18T13:50:28,275 ############################ 2025-09-18T13:50:28,275 # Package would be ignored # 2025-09-18T13:50:28,276 ############################ 2025-09-18T13:50:28,277 Python recognizes 'biobb_adapters.cwl.biobb_dna' as an importable package[^1], 2025-09-18T13:50:28,277 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,278 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,278 package, please make sure that 'biobb_adapters.cwl.biobb_dna' is explicitly added 2025-09-18T13:50:28,279 to the `packages` configuration field. 2025-09-18T13:50:28,280 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,280 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,280 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,281 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,282 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,283 If you don't want 'biobb_adapters.cwl.biobb_dna' to be distributed and are 2025-09-18T13:50:28,284 already explicitly excluding 'biobb_adapters.cwl.biobb_dna' via 2025-09-18T13:50:28,284 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,284 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,285 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,286 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,287 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,288 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,289 even if it does not contain any `.py` files. 2025-09-18T13:50:28,289 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,290 directory, all directories are treated like packages. 2025-09-18T13:50:28,290 ******************************************************************************** 2025-09-18T13:50:28,291 !! 2025-09-18T13:50:28,291 check.warn(importable) 2025-09-18T13:50:28,292 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_flexdyn' is absent from the `packages` configuration. 2025-09-18T13:50:28,292 !! 2025-09-18T13:50:28,293 ******************************************************************************** 2025-09-18T13:50:28,293 ############################ 2025-09-18T13:50:28,293 # Package would be ignored # 2025-09-18T13:50:28,294 ############################ 2025-09-18T13:50:28,294 Python recognizes 'biobb_adapters.cwl.biobb_flexdyn' as an importable package[^1], 2025-09-18T13:50:28,294 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,295 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,296 package, please make sure that 'biobb_adapters.cwl.biobb_flexdyn' is explicitly added 2025-09-18T13:50:28,296 to the `packages` configuration field. 2025-09-18T13:50:28,297 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,297 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,297 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,298 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,299 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,300 If you don't want 'biobb_adapters.cwl.biobb_flexdyn' to be distributed and are 2025-09-18T13:50:28,300 already explicitly excluding 'biobb_adapters.cwl.biobb_flexdyn' via 2025-09-18T13:50:28,301 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,301 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,302 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,303 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,304 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,305 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,305 even if it does not contain any `.py` files. 2025-09-18T13:50:28,306 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,306 directory, all directories are treated like packages. 2025-09-18T13:50:28,307 ******************************************************************************** 2025-09-18T13:50:28,308 !! 2025-09-18T13:50:28,308 check.warn(importable) 2025-09-18T13:50:28,308 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_flexserv' is absent from the `packages` configuration. 2025-09-18T13:50:28,309 !! 2025-09-18T13:50:28,310 ******************************************************************************** 2025-09-18T13:50:28,310 ############################ 2025-09-18T13:50:28,311 # Package would be ignored # 2025-09-18T13:50:28,311 ############################ 2025-09-18T13:50:28,312 Python recognizes 'biobb_adapters.cwl.biobb_flexserv' as an importable package[^1], 2025-09-18T13:50:28,312 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,313 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,313 package, please make sure that 'biobb_adapters.cwl.biobb_flexserv' is explicitly added 2025-09-18T13:50:28,314 to the `packages` configuration field. 2025-09-18T13:50:28,315 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,315 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,315 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,316 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,316 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,317 If you don't want 'biobb_adapters.cwl.biobb_flexserv' to be distributed and are 2025-09-18T13:50:28,317 already explicitly excluding 'biobb_adapters.cwl.biobb_flexserv' via 2025-09-18T13:50:28,318 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,318 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,319 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,319 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,320 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,321 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,321 even if it does not contain any `.py` files. 2025-09-18T13:50:28,322 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,322 directory, all directories are treated like packages. 2025-09-18T13:50:28,323 ******************************************************************************** 2025-09-18T13:50:28,323 !! 2025-09-18T13:50:28,324 check.warn(importable) 2025-09-18T13:50:28,324 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_godmd' is absent from the `packages` configuration. 2025-09-18T13:50:28,325 !! 2025-09-18T13:50:28,326 ******************************************************************************** 2025-09-18T13:50:28,326 ############################ 2025-09-18T13:50:28,326 # Package would be ignored # 2025-09-18T13:50:28,327 ############################ 2025-09-18T13:50:28,327 Python recognizes 'biobb_adapters.cwl.biobb_godmd' as an importable package[^1], 2025-09-18T13:50:28,328 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,329 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,329 package, please make sure that 'biobb_adapters.cwl.biobb_godmd' is explicitly added 2025-09-18T13:50:28,330 to the `packages` configuration field. 2025-09-18T13:50:28,330 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,331 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,331 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,332 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,333 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,334 If you don't want 'biobb_adapters.cwl.biobb_godmd' to be distributed and are 2025-09-18T13:50:28,334 already explicitly excluding 'biobb_adapters.cwl.biobb_godmd' via 2025-09-18T13:50:28,335 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,335 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,336 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,337 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,338 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,339 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,339 even if it does not contain any `.py` files. 2025-09-18T13:50:28,340 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,340 directory, all directories are treated like packages. 2025-09-18T13:50:28,341 ******************************************************************************** 2025-09-18T13:50:28,341 !! 2025-09-18T13:50:28,342 check.warn(importable) 2025-09-18T13:50:28,342 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_gromacs' is absent from the `packages` configuration. 2025-09-18T13:50:28,342 !! 2025-09-18T13:50:28,343 ******************************************************************************** 2025-09-18T13:50:28,344 ############################ 2025-09-18T13:50:28,344 # Package would be ignored # 2025-09-18T13:50:28,344 ############################ 2025-09-18T13:50:28,345 Python recognizes 'biobb_adapters.cwl.biobb_gromacs' as an importable package[^1], 2025-09-18T13:50:28,345 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,346 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,346 package, please make sure that 'biobb_adapters.cwl.biobb_gromacs' is explicitly added 2025-09-18T13:50:28,347 to the `packages` configuration field. 2025-09-18T13:50:28,348 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,348 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,348 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,349 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,350 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,351 If you don't want 'biobb_adapters.cwl.biobb_gromacs' to be distributed and are 2025-09-18T13:50:28,351 already explicitly excluding 'biobb_adapters.cwl.biobb_gromacs' via 2025-09-18T13:50:28,352 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,352 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,353 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,354 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,354 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,356 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,356 even if it does not contain any `.py` files. 2025-09-18T13:50:28,357 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,357 directory, all directories are treated like packages. 2025-09-18T13:50:28,357 ******************************************************************************** 2025-09-18T13:50:28,358 !! 2025-09-18T13:50:28,359 check.warn(importable) 2025-09-18T13:50:28,359 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_haddock' is absent from the `packages` configuration. 2025-09-18T13:50:28,360 !! 2025-09-18T13:50:28,361 ******************************************************************************** 2025-09-18T13:50:28,362 ############################ 2025-09-18T13:50:28,362 # Package would be ignored # 2025-09-18T13:50:28,363 ############################ 2025-09-18T13:50:28,363 Python recognizes 'biobb_adapters.cwl.biobb_haddock' as an importable package[^1], 2025-09-18T13:50:28,363 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,364 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,364 package, please make sure that 'biobb_adapters.cwl.biobb_haddock' is explicitly added 2025-09-18T13:50:28,365 to the `packages` configuration field. 2025-09-18T13:50:28,365 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,366 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,366 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,367 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,367 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,368 If you don't want 'biobb_adapters.cwl.biobb_haddock' to be distributed and are 2025-09-18T13:50:28,368 already explicitly excluding 'biobb_adapters.cwl.biobb_haddock' via 2025-09-18T13:50:28,369 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,369 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,370 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,370 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,371 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,373 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,373 even if it does not contain any `.py` files. 2025-09-18T13:50:28,374 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,374 directory, all directories are treated like packages. 2025-09-18T13:50:28,375 ******************************************************************************** 2025-09-18T13:50:28,375 !! 2025-09-18T13:50:28,376 check.warn(importable) 2025-09-18T13:50:28,376 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_io' is absent from the `packages` configuration. 2025-09-18T13:50:28,377 !! 2025-09-18T13:50:28,378 ******************************************************************************** 2025-09-18T13:50:28,378 ############################ 2025-09-18T13:50:28,378 # Package would be ignored # 2025-09-18T13:50:28,379 ############################ 2025-09-18T13:50:28,379 Python recognizes 'biobb_adapters.cwl.biobb_io' as an importable package[^1], 2025-09-18T13:50:28,380 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,381 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,381 package, please make sure that 'biobb_adapters.cwl.biobb_io' is explicitly added 2025-09-18T13:50:28,381 to the `packages` configuration field. 2025-09-18T13:50:28,382 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,383 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,383 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,384 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,385 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,386 If you don't want 'biobb_adapters.cwl.biobb_io' to be distributed and are 2025-09-18T13:50:28,387 already explicitly excluding 'biobb_adapters.cwl.biobb_io' via 2025-09-18T13:50:28,387 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,388 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,388 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,389 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,389 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,390 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,391 even if it does not contain any `.py` files. 2025-09-18T13:50:28,391 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,391 directory, all directories are treated like packages. 2025-09-18T13:50:28,392 ******************************************************************************** 2025-09-18T13:50:28,393 !! 2025-09-18T13:50:28,393 check.warn(importable) 2025-09-18T13:50:28,393 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_md' is absent from the `packages` configuration. 2025-09-18T13:50:28,394 !! 2025-09-18T13:50:28,394 ******************************************************************************** 2025-09-18T13:50:28,395 ############################ 2025-09-18T13:50:28,395 # Package would be ignored # 2025-09-18T13:50:28,396 ############################ 2025-09-18T13:50:28,396 Python recognizes 'biobb_adapters.cwl.biobb_md' as an importable package[^1], 2025-09-18T13:50:28,397 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,397 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,398 package, please make sure that 'biobb_adapters.cwl.biobb_md' is explicitly added 2025-09-18T13:50:28,398 to the `packages` configuration field. 2025-09-18T13:50:28,399 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,399 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,400 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,401 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,401 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,403 If you don't want 'biobb_adapters.cwl.biobb_md' to be distributed and are 2025-09-18T13:50:28,403 already explicitly excluding 'biobb_adapters.cwl.biobb_md' via 2025-09-18T13:50:28,403 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,404 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,404 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,406 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,407 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,408 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,408 even if it does not contain any `.py` files. 2025-09-18T13:50:28,409 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,410 directory, all directories are treated like packages. 2025-09-18T13:50:28,410 ******************************************************************************** 2025-09-18T13:50:28,411 !! 2025-09-18T13:50:28,412 check.warn(importable) 2025-09-18T13:50:28,412 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_mem' is absent from the `packages` configuration. 2025-09-18T13:50:28,412 !! 2025-09-18T13:50:28,413 ******************************************************************************** 2025-09-18T13:50:28,413 ############################ 2025-09-18T13:50:28,414 # Package would be ignored # 2025-09-18T13:50:28,414 ############################ 2025-09-18T13:50:28,414 Python recognizes 'biobb_adapters.cwl.biobb_mem' as an importable package[^1], 2025-09-18T13:50:28,415 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,415 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,416 package, please make sure that 'biobb_adapters.cwl.biobb_mem' is explicitly added 2025-09-18T13:50:28,416 to the `packages` configuration field. 2025-09-18T13:50:28,417 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,417 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,417 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,418 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,419 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,420 If you don't want 'biobb_adapters.cwl.biobb_mem' to be distributed and are 2025-09-18T13:50:28,420 already explicitly excluding 'biobb_adapters.cwl.biobb_mem' via 2025-09-18T13:50:28,421 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,421 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,422 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,422 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,423 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,425 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,425 even if it does not contain any `.py` files. 2025-09-18T13:50:28,426 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,426 directory, all directories are treated like packages. 2025-09-18T13:50:28,427 ******************************************************************************** 2025-09-18T13:50:28,428 !! 2025-09-18T13:50:28,429 check.warn(importable) 2025-09-18T13:50:28,429 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_ml' is absent from the `packages` configuration. 2025-09-18T13:50:28,430 !! 2025-09-18T13:50:28,431 ******************************************************************************** 2025-09-18T13:50:28,431 ############################ 2025-09-18T13:50:28,431 # Package would be ignored # 2025-09-18T13:50:28,432 ############################ 2025-09-18T13:50:28,432 Python recognizes 'biobb_adapters.cwl.biobb_ml' as an importable package[^1], 2025-09-18T13:50:28,433 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,434 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,434 package, please make sure that 'biobb_adapters.cwl.biobb_ml' is explicitly added 2025-09-18T13:50:28,435 to the `packages` configuration field. 2025-09-18T13:50:28,436 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,436 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,437 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,438 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,438 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,439 If you don't want 'biobb_adapters.cwl.biobb_ml' to be distributed and are 2025-09-18T13:50:28,439 already explicitly excluding 'biobb_adapters.cwl.biobb_ml' via 2025-09-18T13:50:28,439 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,440 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,440 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,441 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,442 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,443 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,443 even if it does not contain any `.py` files. 2025-09-18T13:50:28,443 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,444 directory, all directories are treated like packages. 2025-09-18T13:50:28,444 ******************************************************************************** 2025-09-18T13:50:28,445 !! 2025-09-18T13:50:28,445 check.warn(importable) 2025-09-18T13:50:28,446 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_model' is absent from the `packages` configuration. 2025-09-18T13:50:28,446 !! 2025-09-18T13:50:28,447 ******************************************************************************** 2025-09-18T13:50:28,447 ############################ 2025-09-18T13:50:28,447 # Package would be ignored # 2025-09-18T13:50:28,448 ############################ 2025-09-18T13:50:28,448 Python recognizes 'biobb_adapters.cwl.biobb_model' as an importable package[^1], 2025-09-18T13:50:28,449 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,449 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,450 package, please make sure that 'biobb_adapters.cwl.biobb_model' is explicitly added 2025-09-18T13:50:28,450 to the `packages` configuration field. 2025-09-18T13:50:28,451 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,452 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,452 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,453 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,454 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,454 If you don't want 'biobb_adapters.cwl.biobb_model' to be distributed and are 2025-09-18T13:50:28,455 already explicitly excluding 'biobb_adapters.cwl.biobb_model' via 2025-09-18T13:50:28,455 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,456 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,456 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,457 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,458 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,460 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,460 even if it does not contain any `.py` files. 2025-09-18T13:50:28,461 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,461 directory, all directories are treated like packages. 2025-09-18T13:50:28,461 ******************************************************************************** 2025-09-18T13:50:28,462 !! 2025-09-18T13:50:28,462 check.warn(importable) 2025-09-18T13:50:28,463 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_pdb_tools' is absent from the `packages` configuration. 2025-09-18T13:50:28,463 !! 2025-09-18T13:50:28,464 ******************************************************************************** 2025-09-18T13:50:28,464 ############################ 2025-09-18T13:50:28,464 # Package would be ignored # 2025-09-18T13:50:28,465 ############################ 2025-09-18T13:50:28,465 Python recognizes 'biobb_adapters.cwl.biobb_pdb_tools' as an importable package[^1], 2025-09-18T13:50:28,465 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,466 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,467 package, please make sure that 'biobb_adapters.cwl.biobb_pdb_tools' is explicitly added 2025-09-18T13:50:28,467 to the `packages` configuration field. 2025-09-18T13:50:28,468 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,468 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,468 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,469 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,470 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,471 If you don't want 'biobb_adapters.cwl.biobb_pdb_tools' to be distributed and are 2025-09-18T13:50:28,471 already explicitly excluding 'biobb_adapters.cwl.biobb_pdb_tools' via 2025-09-18T13:50:28,472 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,473 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,473 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,474 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,475 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,477 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,477 even if it does not contain any `.py` files. 2025-09-18T13:50:28,478 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,478 directory, all directories are treated like packages. 2025-09-18T13:50:28,478 ******************************************************************************** 2025-09-18T13:50:28,479 !! 2025-09-18T13:50:28,480 check.warn(importable) 2025-09-18T13:50:28,480 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_pmx' is absent from the `packages` configuration. 2025-09-18T13:50:28,481 !! 2025-09-18T13:50:28,482 ******************************************************************************** 2025-09-18T13:50:28,482 ############################ 2025-09-18T13:50:28,483 # Package would be ignored # 2025-09-18T13:50:28,483 ############################ 2025-09-18T13:50:28,484 Python recognizes 'biobb_adapters.cwl.biobb_pmx' as an importable package[^1], 2025-09-18T13:50:28,484 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,485 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,486 package, please make sure that 'biobb_adapters.cwl.biobb_pmx' is explicitly added 2025-09-18T13:50:28,486 to the `packages` configuration field. 2025-09-18T13:50:28,487 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,487 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,487 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,488 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,489 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,489 If you don't want 'biobb_adapters.cwl.biobb_pmx' to be distributed and are 2025-09-18T13:50:28,490 already explicitly excluding 'biobb_adapters.cwl.biobb_pmx' via 2025-09-18T13:50:28,490 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,490 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,491 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,491 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,492 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,493 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,494 even if it does not contain any `.py` files. 2025-09-18T13:50:28,494 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,494 directory, all directories are treated like packages. 2025-09-18T13:50:28,495 ******************************************************************************** 2025-09-18T13:50:28,496 !! 2025-09-18T13:50:28,496 check.warn(importable) 2025-09-18T13:50:28,497 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_pytorch' is absent from the `packages` configuration. 2025-09-18T13:50:28,497 !! 2025-09-18T13:50:28,498 ******************************************************************************** 2025-09-18T13:50:28,499 ############################ 2025-09-18T13:50:28,499 # Package would be ignored # 2025-09-18T13:50:28,499 ############################ 2025-09-18T13:50:28,500 Python recognizes 'biobb_adapters.cwl.biobb_pytorch' as an importable package[^1], 2025-09-18T13:50:28,500 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,501 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,502 package, please make sure that 'biobb_adapters.cwl.biobb_pytorch' is explicitly added 2025-09-18T13:50:28,502 to the `packages` configuration field. 2025-09-18T13:50:28,503 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,503 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,504 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,505 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,506 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,507 If you don't want 'biobb_adapters.cwl.biobb_pytorch' to be distributed and are 2025-09-18T13:50:28,507 already explicitly excluding 'biobb_adapters.cwl.biobb_pytorch' via 2025-09-18T13:50:28,508 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,508 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,509 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,510 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,510 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,512 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,512 even if it does not contain any `.py` files. 2025-09-18T13:50:28,512 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,513 directory, all directories are treated like packages. 2025-09-18T13:50:28,513 ******************************************************************************** 2025-09-18T13:50:28,514 !! 2025-09-18T13:50:28,514 check.warn(importable) 2025-09-18T13:50:28,514 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_structure_utils' is absent from the `packages` configuration. 2025-09-18T13:50:28,515 !! 2025-09-18T13:50:28,515 ******************************************************************************** 2025-09-18T13:50:28,516 ############################ 2025-09-18T13:50:28,516 # Package would be ignored # 2025-09-18T13:50:28,516 ############################ 2025-09-18T13:50:28,517 Python recognizes 'biobb_adapters.cwl.biobb_structure_utils' as an importable package[^1], 2025-09-18T13:50:28,517 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,518 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,519 package, please make sure that 'biobb_adapters.cwl.biobb_structure_utils' is explicitly added 2025-09-18T13:50:28,519 to the `packages` configuration field. 2025-09-18T13:50:28,520 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,520 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,521 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,522 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,523 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,524 If you don't want 'biobb_adapters.cwl.biobb_structure_utils' to be distributed and are 2025-09-18T13:50:28,524 already explicitly excluding 'biobb_adapters.cwl.biobb_structure_utils' via 2025-09-18T13:50:28,525 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,525 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,526 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,527 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,527 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,529 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,529 even if it does not contain any `.py` files. 2025-09-18T13:50:28,530 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,530 directory, all directories are treated like packages. 2025-09-18T13:50:28,531 ******************************************************************************** 2025-09-18T13:50:28,532 !! 2025-09-18T13:50:28,532 check.warn(importable) 2025-09-18T13:50:28,533 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.cwl.biobb_vs' is absent from the `packages` configuration. 2025-09-18T13:50:28,533 !! 2025-09-18T13:50:28,534 ******************************************************************************** 2025-09-18T13:50:28,535 ############################ 2025-09-18T13:50:28,535 # Package would be ignored # 2025-09-18T13:50:28,535 ############################ 2025-09-18T13:50:28,536 Python recognizes 'biobb_adapters.cwl.biobb_vs' as an importable package[^1], 2025-09-18T13:50:28,536 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,537 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,537 package, please make sure that 'biobb_adapters.cwl.biobb_vs' is explicitly added 2025-09-18T13:50:28,537 to the `packages` configuration field. 2025-09-18T13:50:28,538 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,539 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,539 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,540 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,541 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,542 If you don't want 'biobb_adapters.cwl.biobb_vs' to be distributed and are 2025-09-18T13:50:28,542 already explicitly excluding 'biobb_adapters.cwl.biobb_vs' via 2025-09-18T13:50:28,543 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,543 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,543 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,544 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,545 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,547 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,547 even if it does not contain any `.py` files. 2025-09-18T13:50:28,548 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,548 directory, all directories are treated like packages. 2025-09-18T13:50:28,549 ******************************************************************************** 2025-09-18T13:50:28,550 !! 2025-09-18T13:50:28,550 check.warn(importable) 2025-09-18T13:50:28,551 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_asitedesign.asitedesign' is absent from the `packages` configuration. 2025-09-18T13:50:28,551 !! 2025-09-18T13:50:28,552 ******************************************************************************** 2025-09-18T13:50:28,553 ############################ 2025-09-18T13:50:28,553 # Package would be ignored # 2025-09-18T13:50:28,554 ############################ 2025-09-18T13:50:28,554 Python recognizes 'biobb_adapters.pycompss.biobb_asitedesign.asitedesign' as an importable package[^1], 2025-09-18T13:50:28,554 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,555 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,556 package, please make sure that 'biobb_adapters.pycompss.biobb_asitedesign.asitedesign' is explicitly added 2025-09-18T13:50:28,556 to the `packages` configuration field. 2025-09-18T13:50:28,557 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,558 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,558 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,560 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,560 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,561 If you don't want 'biobb_adapters.pycompss.biobb_asitedesign.asitedesign' to be distributed and are 2025-09-18T13:50:28,561 already explicitly excluding 'biobb_adapters.pycompss.biobb_asitedesign.asitedesign' via 2025-09-18T13:50:28,562 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,562 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,562 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,563 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,564 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,565 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,565 even if it does not contain any `.py` files. 2025-09-18T13:50:28,565 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,566 directory, all directories are treated like packages. 2025-09-18T13:50:28,566 ******************************************************************************** 2025-09-18T13:50:28,567 !! 2025-09-18T13:50:28,567 check.warn(importable) 2025-09-18T13:50:28,568 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_bioml.bioml' is absent from the `packages` configuration. 2025-09-18T13:50:28,568 !! 2025-09-18T13:50:28,569 ******************************************************************************** 2025-09-18T13:50:28,569 ############################ 2025-09-18T13:50:28,570 # Package would be ignored # 2025-09-18T13:50:28,570 ############################ 2025-09-18T13:50:28,571 Python recognizes 'biobb_adapters.pycompss.biobb_bioml.bioml' as an importable package[^1], 2025-09-18T13:50:28,572 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,572 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,573 package, please make sure that 'biobb_adapters.pycompss.biobb_bioml.bioml' is explicitly added 2025-09-18T13:50:28,574 to the `packages` configuration field. 2025-09-18T13:50:28,575 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,575 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,576 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,577 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,577 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,578 If you don't want 'biobb_adapters.pycompss.biobb_bioml.bioml' to be distributed and are 2025-09-18T13:50:28,579 already explicitly excluding 'biobb_adapters.pycompss.biobb_bioml.bioml' via 2025-09-18T13:50:28,579 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,580 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,580 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,581 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,582 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,583 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,584 even if it does not contain any `.py` files. 2025-09-18T13:50:28,584 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,585 directory, all directories are treated like packages. 2025-09-18T13:50:28,585 ******************************************************************************** 2025-09-18T13:50:28,586 !! 2025-09-18T13:50:28,586 check.warn(importable) 2025-09-18T13:50:28,587 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_common.generic.__pycache__' is absent from the `packages` configuration. 2025-09-18T13:50:28,587 !! 2025-09-18T13:50:28,588 ******************************************************************************** 2025-09-18T13:50:28,588 ############################ 2025-09-18T13:50:28,588 # Package would be ignored # 2025-09-18T13:50:28,589 ############################ 2025-09-18T13:50:28,589 Python recognizes 'biobb_adapters.pycompss.biobb_common.generic.__pycache__' as an importable package[^1], 2025-09-18T13:50:28,589 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,590 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,590 package, please make sure that 'biobb_adapters.pycompss.biobb_common.generic.__pycache__' is explicitly added 2025-09-18T13:50:28,591 to the `packages` configuration field. 2025-09-18T13:50:28,592 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,592 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,592 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,593 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,594 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,595 If you don't want 'biobb_adapters.pycompss.biobb_common.generic.__pycache__' to be distributed and are 2025-09-18T13:50:28,595 already explicitly excluding 'biobb_adapters.pycompss.biobb_common.generic.__pycache__' via 2025-09-18T13:50:28,596 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,596 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,597 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,597 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,598 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,600 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,600 even if it does not contain any `.py` files. 2025-09-18T13:50:28,600 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,601 directory, all directories are treated like packages. 2025-09-18T13:50:28,601 ******************************************************************************** 2025-09-18T13:50:28,602 !! 2025-09-18T13:50:28,603 check.warn(importable) 2025-09-18T13:50:28,603 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_cp2k.cp2k' is absent from the `packages` configuration. 2025-09-18T13:50:28,604 !! 2025-09-18T13:50:28,605 ******************************************************************************** 2025-09-18T13:50:28,605 ############################ 2025-09-18T13:50:28,606 # Package would be ignored # 2025-09-18T13:50:28,606 ############################ 2025-09-18T13:50:28,608 Python recognizes 'biobb_adapters.pycompss.biobb_cp2k.cp2k' as an importable package[^1], 2025-09-18T13:50:28,608 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,609 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,610 package, please make sure that 'biobb_adapters.pycompss.biobb_cp2k.cp2k' is explicitly added 2025-09-18T13:50:28,610 to the `packages` configuration field. 2025-09-18T13:50:28,611 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,611 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,611 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,612 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,613 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,613 If you don't want 'biobb_adapters.pycompss.biobb_cp2k.cp2k' to be distributed and are 2025-09-18T13:50:28,614 already explicitly excluding 'biobb_adapters.pycompss.biobb_cp2k.cp2k' via 2025-09-18T13:50:28,614 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,614 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,615 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,615 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,616 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,618 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,618 even if it does not contain any `.py` files. 2025-09-18T13:50:28,619 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,619 directory, all directories are treated like packages. 2025-09-18T13:50:28,620 ******************************************************************************** 2025-09-18T13:50:28,621 !! 2025-09-18T13:50:28,621 check.warn(importable) 2025-09-18T13:50:28,622 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_dna.backbone' is absent from the `packages` configuration. 2025-09-18T13:50:28,622 !! 2025-09-18T13:50:28,623 ******************************************************************************** 2025-09-18T13:50:28,623 ############################ 2025-09-18T13:50:28,624 # Package would be ignored # 2025-09-18T13:50:28,625 ############################ 2025-09-18T13:50:28,625 Python recognizes 'biobb_adapters.pycompss.biobb_dna.backbone' as an importable package[^1], 2025-09-18T13:50:28,626 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,626 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,627 package, please make sure that 'biobb_adapters.pycompss.biobb_dna.backbone' is explicitly added 2025-09-18T13:50:28,627 to the `packages` configuration field. 2025-09-18T13:50:28,628 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,629 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,629 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,630 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,631 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,632 If you don't want 'biobb_adapters.pycompss.biobb_dna.backbone' to be distributed and are 2025-09-18T13:50:28,632 already explicitly excluding 'biobb_adapters.pycompss.biobb_dna.backbone' via 2025-09-18T13:50:28,633 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,633 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,634 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,634 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,635 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,636 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,636 even if it does not contain any `.py` files. 2025-09-18T13:50:28,637 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,637 directory, all directories are treated like packages. 2025-09-18T13:50:28,637 ******************************************************************************** 2025-09-18T13:50:28,638 !! 2025-09-18T13:50:28,638 check.warn(importable) 2025-09-18T13:50:28,639 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_dna.curvesplus' is absent from the `packages` configuration. 2025-09-18T13:50:28,639 !! 2025-09-18T13:50:28,640 ******************************************************************************** 2025-09-18T13:50:28,640 ############################ 2025-09-18T13:50:28,641 # Package would be ignored # 2025-09-18T13:50:28,641 ############################ 2025-09-18T13:50:28,641 Python recognizes 'biobb_adapters.pycompss.biobb_dna.curvesplus' as an importable package[^1], 2025-09-18T13:50:28,642 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,643 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,643 package, please make sure that 'biobb_adapters.pycompss.biobb_dna.curvesplus' is explicitly added 2025-09-18T13:50:28,643 to the `packages` configuration field. 2025-09-18T13:50:28,644 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,645 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,645 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,646 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,647 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,648 If you don't want 'biobb_adapters.pycompss.biobb_dna.curvesplus' to be distributed and are 2025-09-18T13:50:28,648 already explicitly excluding 'biobb_adapters.pycompss.biobb_dna.curvesplus' via 2025-09-18T13:50:28,649 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,649 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,649 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,650 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,651 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,653 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,653 even if it does not contain any `.py` files. 2025-09-18T13:50:28,653 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,654 directory, all directories are treated like packages. 2025-09-18T13:50:28,655 ******************************************************************************** 2025-09-18T13:50:28,656 !! 2025-09-18T13:50:28,656 check.warn(importable) 2025-09-18T13:50:28,656 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_dna.dna' is absent from the `packages` configuration. 2025-09-18T13:50:28,657 !! 2025-09-18T13:50:28,658 ******************************************************************************** 2025-09-18T13:50:28,658 ############################ 2025-09-18T13:50:28,658 # Package would be ignored # 2025-09-18T13:50:28,659 ############################ 2025-09-18T13:50:28,659 Python recognizes 'biobb_adapters.pycompss.biobb_dna.dna' as an importable package[^1], 2025-09-18T13:50:28,659 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,660 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,660 package, please make sure that 'biobb_adapters.pycompss.biobb_dna.dna' is explicitly added 2025-09-18T13:50:28,661 to the `packages` configuration field. 2025-09-18T13:50:28,661 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,662 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,662 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,663 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,664 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,664 If you don't want 'biobb_adapters.pycompss.biobb_dna.dna' to be distributed and are 2025-09-18T13:50:28,665 already explicitly excluding 'biobb_adapters.pycompss.biobb_dna.dna' via 2025-09-18T13:50:28,665 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,666 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,666 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,667 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,668 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,669 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,669 even if it does not contain any `.py` files. 2025-09-18T13:50:28,670 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,670 directory, all directories are treated like packages. 2025-09-18T13:50:28,671 ******************************************************************************** 2025-09-18T13:50:28,672 !! 2025-09-18T13:50:28,673 check.warn(importable) 2025-09-18T13:50:28,673 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_dna.interbp_correlations' is absent from the `packages` configuration. 2025-09-18T13:50:28,674 !! 2025-09-18T13:50:28,675 ******************************************************************************** 2025-09-18T13:50:28,675 ############################ 2025-09-18T13:50:28,675 # Package would be ignored # 2025-09-18T13:50:28,676 ############################ 2025-09-18T13:50:28,676 Python recognizes 'biobb_adapters.pycompss.biobb_dna.interbp_correlations' as an importable package[^1], 2025-09-18T13:50:28,677 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,678 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,678 package, please make sure that 'biobb_adapters.pycompss.biobb_dna.interbp_correlations' is explicitly added 2025-09-18T13:50:28,679 to the `packages` configuration field. 2025-09-18T13:50:28,679 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,680 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,680 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,681 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,682 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,682 If you don't want 'biobb_adapters.pycompss.biobb_dna.interbp_correlations' to be distributed and are 2025-09-18T13:50:28,683 already explicitly excluding 'biobb_adapters.pycompss.biobb_dna.interbp_correlations' via 2025-09-18T13:50:28,683 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,683 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,684 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,684 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,685 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,686 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,687 even if it does not contain any `.py` files. 2025-09-18T13:50:28,687 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,687 directory, all directories are treated like packages. 2025-09-18T13:50:28,688 ******************************************************************************** 2025-09-18T13:50:28,689 !! 2025-09-18T13:50:28,689 check.warn(importable) 2025-09-18T13:50:28,690 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_dna.intrabp_correlations' is absent from the `packages` configuration. 2025-09-18T13:50:28,690 !! 2025-09-18T13:50:28,691 ******************************************************************************** 2025-09-18T13:50:28,692 ############################ 2025-09-18T13:50:28,692 # Package would be ignored # 2025-09-18T13:50:28,692 ############################ 2025-09-18T13:50:28,693 Python recognizes 'biobb_adapters.pycompss.biobb_dna.intrabp_correlations' as an importable package[^1], 2025-09-18T13:50:28,693 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,694 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,695 package, please make sure that 'biobb_adapters.pycompss.biobb_dna.intrabp_correlations' is explicitly added 2025-09-18T13:50:28,695 to the `packages` configuration field. 2025-09-18T13:50:28,696 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,696 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,697 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,698 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,699 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,699 If you don't want 'biobb_adapters.pycompss.biobb_dna.intrabp_correlations' to be distributed and are 2025-09-18T13:50:28,700 already explicitly excluding 'biobb_adapters.pycompss.biobb_dna.intrabp_correlations' via 2025-09-18T13:50:28,700 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,701 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,701 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,702 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,703 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,704 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,705 even if it does not contain any `.py` files. 2025-09-18T13:50:28,705 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,706 directory, all directories are treated like packages. 2025-09-18T13:50:28,706 ******************************************************************************** 2025-09-18T13:50:28,707 !! 2025-09-18T13:50:28,707 check.warn(importable) 2025-09-18T13:50:28,707 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_dna.stiffness' is absent from the `packages` configuration. 2025-09-18T13:50:28,708 !! 2025-09-18T13:50:28,708 ******************************************************************************** 2025-09-18T13:50:28,709 ############################ 2025-09-18T13:50:28,709 # Package would be ignored # 2025-09-18T13:50:28,709 ############################ 2025-09-18T13:50:28,710 Python recognizes 'biobb_adapters.pycompss.biobb_dna.stiffness' as an importable package[^1], 2025-09-18T13:50:28,710 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,711 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,711 package, please make sure that 'biobb_adapters.pycompss.biobb_dna.stiffness' is explicitly added 2025-09-18T13:50:28,712 to the `packages` configuration field. 2025-09-18T13:50:28,713 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,713 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,713 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,714 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,715 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,716 If you don't want 'biobb_adapters.pycompss.biobb_dna.stiffness' to be distributed and are 2025-09-18T13:50:28,717 already explicitly excluding 'biobb_adapters.pycompss.biobb_dna.stiffness' via 2025-09-18T13:50:28,717 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,718 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,718 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,719 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,720 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,721 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,722 even if it does not contain any `.py` files. 2025-09-18T13:50:28,722 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,723 directory, all directories are treated like packages. 2025-09-18T13:50:28,723 ******************************************************************************** 2025-09-18T13:50:28,724 !! 2025-09-18T13:50:28,725 check.warn(importable) 2025-09-18T13:50:28,725 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_flexdyn.flexdyn' is absent from the `packages` configuration. 2025-09-18T13:50:28,726 !! 2025-09-18T13:50:28,727 ******************************************************************************** 2025-09-18T13:50:28,727 ############################ 2025-09-18T13:50:28,728 # Package would be ignored # 2025-09-18T13:50:28,728 ############################ 2025-09-18T13:50:28,728 Python recognizes 'biobb_adapters.pycompss.biobb_flexdyn.flexdyn' as an importable package[^1], 2025-09-18T13:50:28,729 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,729 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,730 package, please make sure that 'biobb_adapters.pycompss.biobb_flexdyn.flexdyn' is explicitly added 2025-09-18T13:50:28,730 to the `packages` configuration field. 2025-09-18T13:50:28,731 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,731 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,732 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,732 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,733 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,734 If you don't want 'biobb_adapters.pycompss.biobb_flexdyn.flexdyn' to be distributed and are 2025-09-18T13:50:28,734 already explicitly excluding 'biobb_adapters.pycompss.biobb_flexdyn.flexdyn' via 2025-09-18T13:50:28,734 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,735 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,735 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,736 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,737 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,739 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,739 even if it does not contain any `.py` files. 2025-09-18T13:50:28,739 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,740 directory, all directories are treated like packages. 2025-09-18T13:50:28,740 ******************************************************************************** 2025-09-18T13:50:28,741 !! 2025-09-18T13:50:28,742 check.warn(importable) 2025-09-18T13:50:28,742 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_flexserv.flexserv' is absent from the `packages` configuration. 2025-09-18T13:50:28,743 !! 2025-09-18T13:50:28,744 ******************************************************************************** 2025-09-18T13:50:28,744 ############################ 2025-09-18T13:50:28,745 # Package would be ignored # 2025-09-18T13:50:28,745 ############################ 2025-09-18T13:50:28,745 Python recognizes 'biobb_adapters.pycompss.biobb_flexserv.flexserv' as an importable package[^1], 2025-09-18T13:50:28,746 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,747 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,747 package, please make sure that 'biobb_adapters.pycompss.biobb_flexserv.flexserv' is explicitly added 2025-09-18T13:50:28,748 to the `packages` configuration field. 2025-09-18T13:50:28,749 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,749 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,750 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,751 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,752 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,753 If you don't want 'biobb_adapters.pycompss.biobb_flexserv.flexserv' to be distributed and are 2025-09-18T13:50:28,754 already explicitly excluding 'biobb_adapters.pycompss.biobb_flexserv.flexserv' via 2025-09-18T13:50:28,754 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,755 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,755 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,756 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,757 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,758 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,758 even if it does not contain any `.py` files. 2025-09-18T13:50:28,759 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,759 directory, all directories are treated like packages. 2025-09-18T13:50:28,759 ******************************************************************************** 2025-09-18T13:50:28,760 !! 2025-09-18T13:50:28,761 check.warn(importable) 2025-09-18T13:50:28,761 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_flexserv.pcasuite' is absent from the `packages` configuration. 2025-09-18T13:50:28,762 !! 2025-09-18T13:50:28,763 ******************************************************************************** 2025-09-18T13:50:28,763 ############################ 2025-09-18T13:50:28,764 # Package would be ignored # 2025-09-18T13:50:28,764 ############################ 2025-09-18T13:50:28,765 Python recognizes 'biobb_adapters.pycompss.biobb_flexserv.pcasuite' as an importable package[^1], 2025-09-18T13:50:28,765 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,766 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,767 package, please make sure that 'biobb_adapters.pycompss.biobb_flexserv.pcasuite' is explicitly added 2025-09-18T13:50:28,767 to the `packages` configuration field. 2025-09-18T13:50:28,768 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,769 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,769 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,770 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,771 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,772 If you don't want 'biobb_adapters.pycompss.biobb_flexserv.pcasuite' to be distributed and are 2025-09-18T13:50:28,773 already explicitly excluding 'biobb_adapters.pycompss.biobb_flexserv.pcasuite' via 2025-09-18T13:50:28,773 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,774 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,774 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,775 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,776 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,778 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,778 even if it does not contain any `.py` files. 2025-09-18T13:50:28,779 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,779 directory, all directories are treated like packages. 2025-09-18T13:50:28,780 ******************************************************************************** 2025-09-18T13:50:28,781 !! 2025-09-18T13:50:28,781 check.warn(importable) 2025-09-18T13:50:28,782 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_godmd.godmd' is absent from the `packages` configuration. 2025-09-18T13:50:28,782 !! 2025-09-18T13:50:28,783 ******************************************************************************** 2025-09-18T13:50:28,783 ############################ 2025-09-18T13:50:28,784 # Package would be ignored # 2025-09-18T13:50:28,784 ############################ 2025-09-18T13:50:28,784 Python recognizes 'biobb_adapters.pycompss.biobb_godmd.godmd' as an importable package[^1], 2025-09-18T13:50:28,785 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,786 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,786 package, please make sure that 'biobb_adapters.pycompss.biobb_godmd.godmd' is explicitly added 2025-09-18T13:50:28,786 to the `packages` configuration field. 2025-09-18T13:50:28,787 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,788 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,788 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,789 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,790 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,791 If you don't want 'biobb_adapters.pycompss.biobb_godmd.godmd' to be distributed and are 2025-09-18T13:50:28,791 already explicitly excluding 'biobb_adapters.pycompss.biobb_godmd.godmd' via 2025-09-18T13:50:28,792 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,792 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,793 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,794 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,795 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,796 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,797 even if it does not contain any `.py` files. 2025-09-18T13:50:28,797 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,798 directory, all directories are treated like packages. 2025-09-18T13:50:28,798 ******************************************************************************** 2025-09-18T13:50:28,799 !! 2025-09-18T13:50:28,800 check.warn(importable) 2025-09-18T13:50:28,800 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_gromacs.gromacs' is absent from the `packages` configuration. 2025-09-18T13:50:28,801 !! 2025-09-18T13:50:28,802 ******************************************************************************** 2025-09-18T13:50:28,802 ############################ 2025-09-18T13:50:28,803 # Package would be ignored # 2025-09-18T13:50:28,803 ############################ 2025-09-18T13:50:28,804 Python recognizes 'biobb_adapters.pycompss.biobb_gromacs.gromacs' as an importable package[^1], 2025-09-18T13:50:28,804 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,805 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,806 package, please make sure that 'biobb_adapters.pycompss.biobb_gromacs.gromacs' is explicitly added 2025-09-18T13:50:28,806 to the `packages` configuration field. 2025-09-18T13:50:28,807 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,807 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,808 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,809 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,810 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,810 If you don't want 'biobb_adapters.pycompss.biobb_gromacs.gromacs' to be distributed and are 2025-09-18T13:50:28,811 already explicitly excluding 'biobb_adapters.pycompss.biobb_gromacs.gromacs' via 2025-09-18T13:50:28,811 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,812 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,812 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,813 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,814 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,815 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,815 even if it does not contain any `.py` files. 2025-09-18T13:50:28,816 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,816 directory, all directories are treated like packages. 2025-09-18T13:50:28,817 ******************************************************************************** 2025-09-18T13:50:28,817 !! 2025-09-18T13:50:28,818 check.warn(importable) 2025-09-18T13:50:28,818 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_gromacs.gromacs_extra' is absent from the `packages` configuration. 2025-09-18T13:50:28,819 !! 2025-09-18T13:50:28,820 ******************************************************************************** 2025-09-18T13:50:28,820 ############################ 2025-09-18T13:50:28,821 # Package would be ignored # 2025-09-18T13:50:28,821 ############################ 2025-09-18T13:50:28,822 Python recognizes 'biobb_adapters.pycompss.biobb_gromacs.gromacs_extra' as an importable package[^1], 2025-09-18T13:50:28,822 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,823 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,823 package, please make sure that 'biobb_adapters.pycompss.biobb_gromacs.gromacs_extra' is explicitly added 2025-09-18T13:50:28,824 to the `packages` configuration field. 2025-09-18T13:50:28,825 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,825 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,826 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,827 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,828 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,829 If you don't want 'biobb_adapters.pycompss.biobb_gromacs.gromacs_extra' to be distributed and are 2025-09-18T13:50:28,829 already explicitly excluding 'biobb_adapters.pycompss.biobb_gromacs.gromacs_extra' via 2025-09-18T13:50:28,830 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,831 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,831 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,832 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,833 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,834 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,834 even if it does not contain any `.py` files. 2025-09-18T13:50:28,835 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,835 directory, all directories are treated like packages. 2025-09-18T13:50:28,835 ******************************************************************************** 2025-09-18T13:50:28,836 !! 2025-09-18T13:50:28,837 check.warn(importable) 2025-09-18T13:50:28,837 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_haddock.haddock' is absent from the `packages` configuration. 2025-09-18T13:50:28,837 !! 2025-09-18T13:50:28,838 ******************************************************************************** 2025-09-18T13:50:28,839 ############################ 2025-09-18T13:50:28,839 # Package would be ignored # 2025-09-18T13:50:28,840 ############################ 2025-09-18T13:50:28,840 Python recognizes 'biobb_adapters.pycompss.biobb_haddock.haddock' as an importable package[^1], 2025-09-18T13:50:28,841 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,842 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,842 package, please make sure that 'biobb_adapters.pycompss.biobb_haddock.haddock' is explicitly added 2025-09-18T13:50:28,843 to the `packages` configuration field. 2025-09-18T13:50:28,844 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,844 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,844 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,845 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,846 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,847 If you don't want 'biobb_adapters.pycompss.biobb_haddock.haddock' to be distributed and are 2025-09-18T13:50:28,848 already explicitly excluding 'biobb_adapters.pycompss.biobb_haddock.haddock' via 2025-09-18T13:50:28,848 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,849 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,850 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,850 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,851 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,853 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,853 even if it does not contain any `.py` files. 2025-09-18T13:50:28,854 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,854 directory, all directories are treated like packages. 2025-09-18T13:50:28,855 ******************************************************************************** 2025-09-18T13:50:28,856 !! 2025-09-18T13:50:28,857 check.warn(importable) 2025-09-18T13:50:28,857 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_haddock.haddock.__pycache__' is absent from the `packages` configuration. 2025-09-18T13:50:28,857 !! 2025-09-18T13:50:28,859 ******************************************************************************** 2025-09-18T13:50:28,859 ############################ 2025-09-18T13:50:28,859 # Package would be ignored # 2025-09-18T13:50:28,860 ############################ 2025-09-18T13:50:28,860 Python recognizes 'biobb_adapters.pycompss.biobb_haddock.haddock.__pycache__' as an importable package[^1], 2025-09-18T13:50:28,861 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,862 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,862 package, please make sure that 'biobb_adapters.pycompss.biobb_haddock.haddock.__pycache__' is explicitly added 2025-09-18T13:50:28,862 to the `packages` configuration field. 2025-09-18T13:50:28,863 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,864 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,864 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,865 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,866 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,867 If you don't want 'biobb_adapters.pycompss.biobb_haddock.haddock.__pycache__' to be distributed and are 2025-09-18T13:50:28,867 already explicitly excluding 'biobb_adapters.pycompss.biobb_haddock.haddock.__pycache__' via 2025-09-18T13:50:28,867 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,868 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,868 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,869 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,870 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,872 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,872 even if it does not contain any `.py` files. 2025-09-18T13:50:28,872 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,873 directory, all directories are treated like packages. 2025-09-18T13:50:28,873 ******************************************************************************** 2025-09-18T13:50:28,874 !! 2025-09-18T13:50:28,875 check.warn(importable) 2025-09-18T13:50:28,875 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_haddock.haddock_restraints' is absent from the `packages` configuration. 2025-09-18T13:50:28,876 !! 2025-09-18T13:50:28,877 ******************************************************************************** 2025-09-18T13:50:28,878 ############################ 2025-09-18T13:50:28,878 # Package would be ignored # 2025-09-18T13:50:28,879 ############################ 2025-09-18T13:50:28,880 Python recognizes 'biobb_adapters.pycompss.biobb_haddock.haddock_restraints' as an importable package[^1], 2025-09-18T13:50:28,880 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,881 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,882 package, please make sure that 'biobb_adapters.pycompss.biobb_haddock.haddock_restraints' is explicitly added 2025-09-18T13:50:28,883 to the `packages` configuration field. 2025-09-18T13:50:28,884 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,885 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,885 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,886 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,887 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,888 If you don't want 'biobb_adapters.pycompss.biobb_haddock.haddock_restraints' to be distributed and are 2025-09-18T13:50:28,889 already explicitly excluding 'biobb_adapters.pycompss.biobb_haddock.haddock_restraints' via 2025-09-18T13:50:28,889 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,890 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,890 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,891 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,892 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,894 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,895 even if it does not contain any `.py` files. 2025-09-18T13:50:28,895 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,896 directory, all directories are treated like packages. 2025-09-18T13:50:28,896 ******************************************************************************** 2025-09-18T13:50:28,898 !! 2025-09-18T13:50:28,898 check.warn(importable) 2025-09-18T13:50:28,899 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_mem.ambertools' is absent from the `packages` configuration. 2025-09-18T13:50:28,899 !! 2025-09-18T13:50:28,900 ******************************************************************************** 2025-09-18T13:50:28,901 ############################ 2025-09-18T13:50:28,902 # Package would be ignored # 2025-09-18T13:50:28,902 ############################ 2025-09-18T13:50:28,903 Python recognizes 'biobb_adapters.pycompss.biobb_mem.ambertools' as an importable package[^1], 2025-09-18T13:50:28,903 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,904 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,905 package, please make sure that 'biobb_adapters.pycompss.biobb_mem.ambertools' is explicitly added 2025-09-18T13:50:28,906 to the `packages` configuration field. 2025-09-18T13:50:28,907 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,908 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,908 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,909 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,910 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,912 If you don't want 'biobb_adapters.pycompss.biobb_mem.ambertools' to be distributed and are 2025-09-18T13:50:28,912 already explicitly excluding 'biobb_adapters.pycompss.biobb_mem.ambertools' via 2025-09-18T13:50:28,913 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,914 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,914 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,916 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,917 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,919 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,919 even if it does not contain any `.py` files. 2025-09-18T13:50:28,920 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,920 directory, all directories are treated like packages. 2025-09-18T13:50:28,921 ******************************************************************************** 2025-09-18T13:50:28,922 !! 2025-09-18T13:50:28,922 check.warn(importable) 2025-09-18T13:50:28,923 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_mem.fatslim' is absent from the `packages` configuration. 2025-09-18T13:50:28,923 !! 2025-09-18T13:50:28,924 ******************************************************************************** 2025-09-18T13:50:28,925 ############################ 2025-09-18T13:50:28,925 # Package would be ignored # 2025-09-18T13:50:28,926 ############################ 2025-09-18T13:50:28,926 Python recognizes 'biobb_adapters.pycompss.biobb_mem.fatslim' as an importable package[^1], 2025-09-18T13:50:28,927 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,928 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,929 package, please make sure that 'biobb_adapters.pycompss.biobb_mem.fatslim' is explicitly added 2025-09-18T13:50:28,929 to the `packages` configuration field. 2025-09-18T13:50:28,930 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,931 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,931 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,933 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,934 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,935 If you don't want 'biobb_adapters.pycompss.biobb_mem.fatslim' to be distributed and are 2025-09-18T13:50:28,936 already explicitly excluding 'biobb_adapters.pycompss.biobb_mem.fatslim' via 2025-09-18T13:50:28,936 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,937 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,937 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,938 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,940 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,942 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,942 even if it does not contain any `.py` files. 2025-09-18T13:50:28,943 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,943 directory, all directories are treated like packages. 2025-09-18T13:50:28,944 ******************************************************************************** 2025-09-18T13:50:28,945 !! 2025-09-18T13:50:28,946 check.warn(importable) 2025-09-18T13:50:28,946 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_mem.gromacs' is absent from the `packages` configuration. 2025-09-18T13:50:28,947 !! 2025-09-18T13:50:28,948 ******************************************************************************** 2025-09-18T13:50:28,949 ############################ 2025-09-18T13:50:28,949 # Package would be ignored # 2025-09-18T13:50:28,950 ############################ 2025-09-18T13:50:28,951 Python recognizes 'biobb_adapters.pycompss.biobb_mem.gromacs' as an importable package[^1], 2025-09-18T13:50:28,951 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,952 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,953 package, please make sure that 'biobb_adapters.pycompss.biobb_mem.gromacs' is explicitly added 2025-09-18T13:50:28,953 to the `packages` configuration field. 2025-09-18T13:50:28,954 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,955 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,955 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,956 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,957 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,958 If you don't want 'biobb_adapters.pycompss.biobb_mem.gromacs' to be distributed and are 2025-09-18T13:50:28,959 already explicitly excluding 'biobb_adapters.pycompss.biobb_mem.gromacs' via 2025-09-18T13:50:28,959 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,960 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,961 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,962 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,963 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,965 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,965 even if it does not contain any `.py` files. 2025-09-18T13:50:28,966 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,967 directory, all directories are treated like packages. 2025-09-18T13:50:28,967 ******************************************************************************** 2025-09-18T13:50:28,968 !! 2025-09-18T13:50:28,969 check.warn(importable) 2025-09-18T13:50:28,970 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_mem.lipyphilic_biobb' is absent from the `packages` configuration. 2025-09-18T13:50:28,970 !! 2025-09-18T13:50:28,972 ******************************************************************************** 2025-09-18T13:50:28,972 ############################ 2025-09-18T13:50:28,973 # Package would be ignored # 2025-09-18T13:50:28,973 ############################ 2025-09-18T13:50:28,974 Python recognizes 'biobb_adapters.pycompss.biobb_mem.lipyphilic_biobb' as an importable package[^1], 2025-09-18T13:50:28,975 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,976 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,976 package, please make sure that 'biobb_adapters.pycompss.biobb_mem.lipyphilic_biobb' is explicitly added 2025-09-18T13:50:28,977 to the `packages` configuration field. 2025-09-18T13:50:28,978 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,978 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,979 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,980 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,981 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:28,982 If you don't want 'biobb_adapters.pycompss.biobb_mem.lipyphilic_biobb' to be distributed and are 2025-09-18T13:50:28,982 already explicitly excluding 'biobb_adapters.pycompss.biobb_mem.lipyphilic_biobb' via 2025-09-18T13:50:28,983 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:28,983 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:28,983 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:28,984 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:28,985 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:28,986 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:28,986 even if it does not contain any `.py` files. 2025-09-18T13:50:28,987 On the other hand, currently there is no concept of package data 2025-09-18T13:50:28,987 directory, all directories are treated like packages. 2025-09-18T13:50:28,988 ******************************************************************************** 2025-09-18T13:50:28,989 !! 2025-09-18T13:50:28,989 check.warn(importable) 2025-09-18T13:50:28,989 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_mem.mdanalysis_biobb' is absent from the `packages` configuration. 2025-09-18T13:50:28,990 !! 2025-09-18T13:50:28,991 ******************************************************************************** 2025-09-18T13:50:28,991 ############################ 2025-09-18T13:50:28,992 # Package would be ignored # 2025-09-18T13:50:28,992 ############################ 2025-09-18T13:50:28,993 Python recognizes 'biobb_adapters.pycompss.biobb_mem.mdanalysis_biobb' as an importable package[^1], 2025-09-18T13:50:28,993 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:28,994 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:28,995 package, please make sure that 'biobb_adapters.pycompss.biobb_mem.mdanalysis_biobb' is explicitly added 2025-09-18T13:50:28,995 to the `packages` configuration field. 2025-09-18T13:50:28,996 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:28,997 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:28,997 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:28,998 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:28,999 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:29,000 If you don't want 'biobb_adapters.pycompss.biobb_mem.mdanalysis_biobb' to be distributed and are 2025-09-18T13:50:29,000 already explicitly excluding 'biobb_adapters.pycompss.biobb_mem.mdanalysis_biobb' via 2025-09-18T13:50:29,001 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:29,001 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:29,002 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:29,003 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:29,004 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:29,005 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:29,006 even if it does not contain any `.py` files. 2025-09-18T13:50:29,006 On the other hand, currently there is no concept of package data 2025-09-18T13:50:29,007 directory, all directories are treated like packages. 2025-09-18T13:50:29,007 ******************************************************************************** 2025-09-18T13:50:29,008 !! 2025-09-18T13:50:29,009 check.warn(importable) 2025-09-18T13:50:29,009 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_pdb_tools.pdb_tools' is absent from the `packages` configuration. 2025-09-18T13:50:29,009 !! 2025-09-18T13:50:29,010 ******************************************************************************** 2025-09-18T13:50:29,011 ############################ 2025-09-18T13:50:29,011 # Package would be ignored # 2025-09-18T13:50:29,012 ############################ 2025-09-18T13:50:29,012 Python recognizes 'biobb_adapters.pycompss.biobb_pdb_tools.pdb_tools' as an importable package[^1], 2025-09-18T13:50:29,012 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:29,013 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:29,014 package, please make sure that 'biobb_adapters.pycompss.biobb_pdb_tools.pdb_tools' is explicitly added 2025-09-18T13:50:29,014 to the `packages` configuration field. 2025-09-18T13:50:29,015 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:29,016 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:29,016 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:29,017 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:29,018 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:29,019 If you don't want 'biobb_adapters.pycompss.biobb_pdb_tools.pdb_tools' to be distributed and are 2025-09-18T13:50:29,019 already explicitly excluding 'biobb_adapters.pycompss.biobb_pdb_tools.pdb_tools' via 2025-09-18T13:50:29,020 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:29,020 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:29,021 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:29,022 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:29,023 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:29,024 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:29,025 even if it does not contain any `.py` files. 2025-09-18T13:50:29,025 On the other hand, currently there is no concept of package data 2025-09-18T13:50:29,025 directory, all directories are treated like packages. 2025-09-18T13:50:29,026 ******************************************************************************** 2025-09-18T13:50:29,027 !! 2025-09-18T13:50:29,027 check.warn(importable) 2025-09-18T13:50:29,028 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_pmx.pmxbiobb' is absent from the `packages` configuration. 2025-09-18T13:50:29,028 !! 2025-09-18T13:50:29,029 ******************************************************************************** 2025-09-18T13:50:29,030 ############################ 2025-09-18T13:50:29,030 # Package would be ignored # 2025-09-18T13:50:29,031 ############################ 2025-09-18T13:50:29,031 Python recognizes 'biobb_adapters.pycompss.biobb_pmx.pmxbiobb' as an importable package[^1], 2025-09-18T13:50:29,032 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:29,033 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:29,033 package, please make sure that 'biobb_adapters.pycompss.biobb_pmx.pmxbiobb' is explicitly added 2025-09-18T13:50:29,034 to the `packages` configuration field. 2025-09-18T13:50:29,035 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:29,035 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:29,035 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:29,036 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:29,037 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:29,038 If you don't want 'biobb_adapters.pycompss.biobb_pmx.pmxbiobb' to be distributed and are 2025-09-18T13:50:29,038 already explicitly excluding 'biobb_adapters.pycompss.biobb_pmx.pmxbiobb' via 2025-09-18T13:50:29,038 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:29,039 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:29,039 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:29,040 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:29,041 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:29,042 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:29,043 even if it does not contain any `.py` files. 2025-09-18T13:50:29,043 On the other hand, currently there is no concept of package data 2025-09-18T13:50:29,043 directory, all directories are treated like packages. 2025-09-18T13:50:29,044 ******************************************************************************** 2025-09-18T13:50:29,045 !! 2025-09-18T13:50:29,045 check.warn(importable) 2025-09-18T13:50:29,046 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_adapters.pycompss.biobb_pytorch.mdae' is absent from the `packages` configuration. 2025-09-18T13:50:29,046 !! 2025-09-18T13:50:29,047 ******************************************************************************** 2025-09-18T13:50:29,048 ############################ 2025-09-18T13:50:29,048 # Package would be ignored # 2025-09-18T13:50:29,048 ############################ 2025-09-18T13:50:29,049 Python recognizes 'biobb_adapters.pycompss.biobb_pytorch.mdae' as an importable package[^1], 2025-09-18T13:50:29,049 but it is absent from setuptools' `packages` configuration. 2025-09-18T13:50:29,050 This leads to an ambiguous overall configuration. If you want to distribute this 2025-09-18T13:50:29,051 package, please make sure that 'biobb_adapters.pycompss.biobb_pytorch.mdae' is explicitly added 2025-09-18T13:50:29,051 to the `packages` configuration field. 2025-09-18T13:50:29,052 Alternatively, you can also rely on setuptools' discovery methods 2025-09-18T13:50:29,053 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-09-18T13:50:29,053 instead of `find_packages(...)`/`find:`). 2025-09-18T13:50:29,054 You can read more about "package discovery" on setuptools documentation page: 2025-09-18T13:50:29,055 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-09-18T13:50:29,056 If you don't want 'biobb_adapters.pycompss.biobb_pytorch.mdae' to be distributed and are 2025-09-18T13:50:29,057 already explicitly excluding 'biobb_adapters.pycompss.biobb_pytorch.mdae' via 2025-09-18T13:50:29,057 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-09-18T13:50:29,058 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-09-18T13:50:29,058 combination with a more fine grained `package-data` configuration. 2025-09-18T13:50:29,059 You can read more about "package data files" on setuptools documentation page: 2025-09-18T13:50:29,060 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-09-18T13:50:29,062 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-09-18T13:50:29,062 even if it does not contain any `.py` files. 2025-09-18T13:50:29,063 On the other hand, currently there is no concept of package data 2025-09-18T13:50:29,063 directory, all directories are treated like packages. 2025-09-18T13:50:29,064 ******************************************************************************** 2025-09-18T13:50:29,065 !! 2025-09-18T13:50:29,065 check.warn(importable) 2025-09-18T13:50:29,066 copying biobb_adapters/py.typed -> build/lib/biobb_adapters 2025-09-18T13:50:29,066 creating build/lib/biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:29,067 copying biobb_adapters/cwl/biobb_amber/amber_to_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:29,067 copying biobb_adapters/cwl/biobb_amber/cestats_run.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:29,068 copying biobb_adapters/cwl/biobb_amber/cphstats_run.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:29,068 copying biobb_adapters/cwl/biobb_amber/cpptraj_randomize_ions.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:29,069 copying biobb_adapters/cwl/biobb_amber/leap_add_ions.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:29,070 copying biobb_adapters/cwl/biobb_amber/leap_build_linear_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:29,070 copying biobb_adapters/cwl/biobb_amber/leap_gen_top.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:29,071 copying biobb_adapters/cwl/biobb_amber/leap_solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:29,071 copying biobb_adapters/cwl/biobb_amber/nab_build_dna_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:29,072 copying biobb_adapters/cwl/biobb_amber/parmed_cpinutil.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:29,073 copying biobb_adapters/cwl/biobb_amber/parmed_hmassrepartition.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:29,073 copying biobb_adapters/cwl/biobb_amber/pdb4amber_run.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:29,074 copying biobb_adapters/cwl/biobb_amber/pmemd_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:29,074 copying biobb_adapters/cwl/biobb_amber/process_mdout.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:29,075 copying biobb_adapters/cwl/biobb_amber/process_minout.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:29,075 copying biobb_adapters/cwl/biobb_amber/sander_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:29,076 creating build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,076 copying biobb_adapters/cwl/biobb_analysis/cpptraj_average.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,077 copying biobb_adapters/cwl/biobb_analysis/cpptraj_bfactor.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,077 copying biobb_adapters/cwl/biobb_analysis/cpptraj_convert.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,078 copying biobb_adapters/cwl/biobb_analysis/cpptraj_dry.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,078 copying biobb_adapters/cwl/biobb_analysis/cpptraj_image.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,079 copying biobb_adapters/cwl/biobb_analysis/cpptraj_mask.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,079 copying biobb_adapters/cwl/biobb_analysis/cpptraj_rgyr.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,080 copying biobb_adapters/cwl/biobb_analysis/cpptraj_rms.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,081 copying biobb_adapters/cwl/biobb_analysis/cpptraj_rmsf.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,081 copying biobb_adapters/cwl/biobb_analysis/cpptraj_slice.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,082 copying biobb_adapters/cwl/biobb_analysis/cpptraj_snapshot.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,082 copying biobb_adapters/cwl/biobb_analysis/cpptraj_strip.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,083 copying biobb_adapters/cwl/biobb_analysis/gmx_cluster.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,083 copying biobb_adapters/cwl/biobb_analysis/gmx_energy.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,083 copying biobb_adapters/cwl/biobb_analysis/gmx_image.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,084 copying biobb_adapters/cwl/biobb_analysis/gmx_rgyr.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,084 copying biobb_adapters/cwl/biobb_analysis/gmx_rms.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,085 copying biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,085 copying biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str_ens.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,086 copying biobb_adapters/cwl/biobb_analysis/gmx_trjconv_trj.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:29,086 creating build/lib/biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:29,087 copying biobb_adapters/cwl/biobb_chemistry/acpype_convert_amber_to_gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:29,087 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_ac.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:29,088 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_cns.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:29,088 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:29,089 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx_opls.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:29,089 copying biobb_adapters/cwl/biobb_chemistry/babel_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:29,090 copying biobb_adapters/cwl/biobb_chemistry/babel_convert.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:29,091 copying biobb_adapters/cwl/biobb_chemistry/babel_minimize.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:29,091 copying biobb_adapters/cwl/biobb_chemistry/babel_remove_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:29,092 copying biobb_adapters/cwl/biobb_chemistry/reduce_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:29,092 copying biobb_adapters/cwl/biobb_chemistry/reduce_remove_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:29,093 creating build/lib/biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:29,093 copying biobb_adapters/cwl/biobb_cmip/cmip.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:29,094 copying biobb_adapters/cwl/biobb_cmip/cmip_ignore_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:29,094 copying biobb_adapters/cwl/biobb_cmip/cmip_prepare_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:29,095 copying biobb_adapters/cwl/biobb_cmip/cmip_prepare_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:29,096 copying biobb_adapters/cwl/biobb_cmip/cmip_run.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:29,096 copying biobb_adapters/cwl/biobb_cmip/cmip_titration.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:29,097 copying biobb_adapters/cwl/biobb_cmip/ignore_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:29,097 copying biobb_adapters/cwl/biobb_cmip/prepare_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:29,098 copying biobb_adapters/cwl/biobb_cmip/prepare_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:29,098 copying biobb_adapters/cwl/biobb_cmip/titration.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:29,099 creating build/lib/biobb_adapters/cwl/biobb_cp2k 2025-09-18T13:50:29,099 copying biobb_adapters/cwl/biobb_cp2k/cp2k_prep.cwl -> build/lib/biobb_adapters/cwl/biobb_cp2k 2025-09-18T13:50:29,100 copying biobb_adapters/cwl/biobb_cp2k/cp2k_run.cwl -> build/lib/biobb_adapters/cwl/biobb_cp2k 2025-09-18T13:50:29,100 creating build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,101 copying biobb_adapters/cwl/biobb_dna/average_stiffness.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,101 copying biobb_adapters/cwl/biobb_dna/basepair_stiffness.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,102 copying biobb_adapters/cwl/biobb_dna/biobb_canal.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,102 copying biobb_adapters/cwl/biobb_dna/biobb_canion.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,103 copying biobb_adapters/cwl/biobb_dna/biobb_curves.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,103 copying biobb_adapters/cwl/biobb_dna/bipopulations.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,104 copying biobb_adapters/cwl/biobb_dna/canal_unzip.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,104 copying biobb_adapters/cwl/biobb_dna/canonicalag.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,105 copying biobb_adapters/cwl/biobb_dna/dna_averages.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,105 copying biobb_adapters/cwl/biobb_dna/dna_bimodality.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,106 copying biobb_adapters/cwl/biobb_dna/dna_timeseries.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,106 copying biobb_adapters/cwl/biobb_dna/dna_timeseries_unzip.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,107 copying biobb_adapters/cwl/biobb_dna/interbpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,107 copying biobb_adapters/cwl/biobb_dna/interhpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,108 copying biobb_adapters/cwl/biobb_dna/interseqcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,108 copying biobb_adapters/cwl/biobb_dna/intrabpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,109 copying biobb_adapters/cwl/biobb_dna/intrahpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,109 copying biobb_adapters/cwl/biobb_dna/intraseqcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,110 copying biobb_adapters/cwl/biobb_dna/puckering.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:29,111 creating build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-09-18T13:50:29,111 copying biobb_adapters/cwl/biobb_flexdyn/concoord_disco.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-09-18T13:50:29,112 copying biobb_adapters/cwl/biobb_flexdyn/concoord_dist.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-09-18T13:50:29,113 copying biobb_adapters/cwl/biobb_flexdyn/imod_imc.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-09-18T13:50:29,114 copying biobb_adapters/cwl/biobb_flexdyn/imod_imode.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-09-18T13:50:29,114 copying biobb_adapters/cwl/biobb_flexdyn/imod_imove.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-09-18T13:50:29,115 copying biobb_adapters/cwl/biobb_flexdyn/nolb_nma.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-09-18T13:50:29,115 copying biobb_adapters/cwl/biobb_flexdyn/prody_anm.cwl -> build/lib/biobb_adapters/cwl/biobb_flexdyn 2025-09-18T13:50:29,116 creating build/lib/biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:29,117 copying biobb_adapters/cwl/biobb_flexserv/bd_run.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:29,117 copying biobb_adapters/cwl/biobb_flexserv/dmd_run.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:29,118 copying biobb_adapters/cwl/biobb_flexserv/nma_run.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:29,118 copying biobb_adapters/cwl/biobb_flexserv/pcz_animate.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:29,119 copying biobb_adapters/cwl/biobb_flexserv/pcz_bfactor.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:29,119 copying biobb_adapters/cwl/biobb_flexserv/pcz_collectivity.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:29,120 copying biobb_adapters/cwl/biobb_flexserv/pcz_evecs.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:29,120 copying biobb_adapters/cwl/biobb_flexserv/pcz_hinges.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:29,121 copying biobb_adapters/cwl/biobb_flexserv/pcz_info.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:29,121 copying biobb_adapters/cwl/biobb_flexserv/pcz_lindemann.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:29,122 copying biobb_adapters/cwl/biobb_flexserv/pcz_similarity.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:29,123 copying biobb_adapters/cwl/biobb_flexserv/pcz_stiffness.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:29,123 copying biobb_adapters/cwl/biobb_flexserv/pcz_unzip.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:29,124 copying biobb_adapters/cwl/biobb_flexserv/pcz_zip.cwl -> build/lib/biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:29,124 creating build/lib/biobb_adapters/cwl/biobb_godmd 2025-09-18T13:50:29,125 copying biobb_adapters/cwl/biobb_godmd/godmd_prep.cwl -> build/lib/biobb_adapters/cwl/biobb_godmd 2025-09-18T13:50:29,125 copying biobb_adapters/cwl/biobb_godmd/godmd_run.cwl -> build/lib/biobb_adapters/cwl/biobb_godmd 2025-09-18T13:50:29,126 creating build/lib/biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:29,126 copying biobb_adapters/cwl/biobb_gromacs/append_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:29,127 copying biobb_adapters/cwl/biobb_gromacs/editconf.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:29,127 copying biobb_adapters/cwl/biobb_gromacs/genion.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:29,128 copying biobb_adapters/cwl/biobb_gromacs/genrestr.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:29,129 copying biobb_adapters/cwl/biobb_gromacs/gmxselect.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:29,129 copying biobb_adapters/cwl/biobb_gromacs/grompp.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:29,130 copying biobb_adapters/cwl/biobb_gromacs/grompp_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:29,130 copying biobb_adapters/cwl/biobb_gromacs/make_ndx.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:29,131 copying biobb_adapters/cwl/biobb_gromacs/mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:29,131 copying biobb_adapters/cwl/biobb_gromacs/ndx2resttop.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:29,132 copying biobb_adapters/cwl/biobb_gromacs/pdb2gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:29,133 copying biobb_adapters/cwl/biobb_gromacs/solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:29,133 copying biobb_adapters/cwl/biobb_gromacs/trjcat.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:29,134 creating build/lib/biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:29,134 copying biobb_adapters/cwl/biobb_haddock/capri_eval.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:29,135 copying biobb_adapters/cwl/biobb_haddock/clust_fcc.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:29,135 copying biobb_adapters/cwl/biobb_haddock/contact_map.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:29,136 copying biobb_adapters/cwl/biobb_haddock/em_ref.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:29,136 copying biobb_adapters/cwl/biobb_haddock/flex_ref.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:29,136 copying biobb_adapters/cwl/biobb_haddock/haddock3_accessibility.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:29,137 copying biobb_adapters/cwl/biobb_haddock/haddock3_actpass_to_ambig.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:29,137 copying biobb_adapters/cwl/biobb_haddock/haddock3_extend.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:29,138 copying biobb_adapters/cwl/biobb_haddock/haddock3_passive_from_active.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:29,138 copying biobb_adapters/cwl/biobb_haddock/haddock3_restrain_bodies.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:29,139 copying biobb_adapters/cwl/biobb_haddock/haddock3_run.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:29,140 copying biobb_adapters/cwl/biobb_haddock/rigid_body.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:29,143 copying biobb_adapters/cwl/biobb_haddock/sele_top.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:29,145 copying biobb_adapters/cwl/biobb_haddock/sele_top_clusts.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:29,147 copying biobb_adapters/cwl/biobb_haddock/topology.cwl -> build/lib/biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:29,149 creating build/lib/biobb_adapters/cwl/biobb_io 2025-09-18T13:50:29,150 copying biobb_adapters/cwl/biobb_io/alphafold.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-09-18T13:50:29,153 copying biobb_adapters/cwl/biobb_io/api_binding_site.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-09-18T13:50:29,155 copying biobb_adapters/cwl/biobb_io/canonical_fasta.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-09-18T13:50:29,157 copying biobb_adapters/cwl/biobb_io/drugbank.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-09-18T13:50:29,159 copying biobb_adapters/cwl/biobb_io/ideal_sdf.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-09-18T13:50:29,161 copying biobb_adapters/cwl/biobb_io/ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-09-18T13:50:29,163 copying biobb_adapters/cwl/biobb_io/mddb.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-09-18T13:50:29,165 copying biobb_adapters/cwl/biobb_io/memprotmd_sim.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-09-18T13:50:29,167 copying biobb_adapters/cwl/biobb_io/memprotmd_sim_list.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-09-18T13:50:29,169 copying biobb_adapters/cwl/biobb_io/memprotmd_sim_search.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-09-18T13:50:29,172 copying biobb_adapters/cwl/biobb_io/mmcif.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-09-18T13:50:29,174 copying biobb_adapters/cwl/biobb_io/pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-09-18T13:50:29,176 copying biobb_adapters/cwl/biobb_io/pdb_cluster_zip.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-09-18T13:50:29,178 copying biobb_adapters/cwl/biobb_io/pdb_variants.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-09-18T13:50:29,180 copying biobb_adapters/cwl/biobb_io/structure_info.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2025-09-18T13:50:29,182 creating build/lib/biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,183 copying biobb_adapters/cwl/biobb_md/append_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,186 copying biobb_adapters/cwl/biobb_md/editconf.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,188 copying biobb_adapters/cwl/biobb_md/genion.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,190 copying biobb_adapters/cwl/biobb_md/genrestr.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,192 copying biobb_adapters/cwl/biobb_md/gmxselect.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,194 copying biobb_adapters/cwl/biobb_md/grompp.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,196 copying biobb_adapters/cwl/biobb_md/grompp_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,198 copying biobb_adapters/cwl/biobb_md/make_ndx.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,200 copying biobb_adapters/cwl/biobb_md/mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,203 copying biobb_adapters/cwl/biobb_md/ndx2resttop.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,205 copying biobb_adapters/cwl/biobb_md/pdb2gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,207 copying biobb_adapters/cwl/biobb_md/solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,209 creating build/lib/biobb_adapters/cwl/biobb_mem 2025-09-18T13:50:29,210 copying biobb_adapters/cwl/biobb_mem/cpptraj_density.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-09-18T13:50:29,213 copying biobb_adapters/cwl/biobb_mem/fatslim_apl.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-09-18T13:50:29,215 copying biobb_adapters/cwl/biobb_mem/fatslim_membranes.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-09-18T13:50:29,217 copying biobb_adapters/cwl/biobb_mem/gmx_order.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-09-18T13:50:29,219 copying biobb_adapters/cwl/biobb_mem/lpp_assign_leaflets.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-09-18T13:50:29,222 copying biobb_adapters/cwl/biobb_mem/lpp_flip_flop.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-09-18T13:50:29,224 copying biobb_adapters/cwl/biobb_mem/lpp_zpositions.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-09-18T13:50:29,226 copying biobb_adapters/cwl/biobb_mem/mda_hole.cwl -> build/lib/biobb_adapters/cwl/biobb_mem 2025-09-18T13:50:29,228 creating build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,230 copying biobb_adapters/cwl/biobb_ml/agglomerative_clustering.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,232 copying biobb_adapters/cwl/biobb_ml/agglomerative_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,234 copying biobb_adapters/cwl/biobb_ml/autoencoder_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,237 copying biobb_adapters/cwl/biobb_ml/classification_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,239 copying biobb_adapters/cwl/biobb_ml/classification_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,241 copying biobb_adapters/cwl/biobb_ml/clustering_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,243 copying biobb_adapters/cwl/biobb_ml/correlation_matrix.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,246 copying biobb_adapters/cwl/biobb_ml/dbscan.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,248 copying biobb_adapters/cwl/biobb_ml/decision_tree.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,250 copying biobb_adapters/cwl/biobb_ml/dendrogram.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,253 copying biobb_adapters/cwl/biobb_ml/drop_columns.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,255 copying biobb_adapters/cwl/biobb_ml/dummy_variables.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,257 copying biobb_adapters/cwl/biobb_ml/k_means.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,260 copying biobb_adapters/cwl/biobb_ml/k_means_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,262 copying biobb_adapters/cwl/biobb_ml/k_neighbors.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,264 copying biobb_adapters/cwl/biobb_ml/k_neighbors_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,266 copying biobb_adapters/cwl/biobb_ml/linear_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,269 copying biobb_adapters/cwl/biobb_ml/logistic_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,271 copying biobb_adapters/cwl/biobb_ml/map_variables.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,273 copying biobb_adapters/cwl/biobb_ml/neural_network_decode.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,275 copying biobb_adapters/cwl/biobb_ml/neural_network_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,277 copying biobb_adapters/cwl/biobb_ml/oversampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,279 copying biobb_adapters/cwl/biobb_ml/pairwise_comparison.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,281 copying biobb_adapters/cwl/biobb_ml/pls_components.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,284 copying biobb_adapters/cwl/biobb_ml/pls_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,286 copying biobb_adapters/cwl/biobb_ml/polynomial_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,288 copying biobb_adapters/cwl/biobb_ml/principal_component.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,290 copying biobb_adapters/cwl/biobb_ml/random_forest_classifier.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,293 copying biobb_adapters/cwl/biobb_ml/random_forest_regressor.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,296 copying biobb_adapters/cwl/biobb_ml/recurrent_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,298 copying biobb_adapters/cwl/biobb_ml/regression_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,300 copying biobb_adapters/cwl/biobb_ml/regression_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,303 copying biobb_adapters/cwl/biobb_ml/resampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,305 copying biobb_adapters/cwl/biobb_ml/scale_columns.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,307 copying biobb_adapters/cwl/biobb_ml/spectral_clustering.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,309 copying biobb_adapters/cwl/biobb_ml/spectral_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,312 copying biobb_adapters/cwl/biobb_ml/support_vector_machine.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,314 copying biobb_adapters/cwl/biobb_ml/undersampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:29,317 creating build/lib/biobb_adapters/cwl/biobb_model 2025-09-18T13:50:29,318 copying biobb_adapters/cwl/biobb_model/checking_log.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-09-18T13:50:29,320 copying biobb_adapters/cwl/biobb_model/fix_altlocs.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-09-18T13:50:29,322 copying biobb_adapters/cwl/biobb_model/fix_amides.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-09-18T13:50:29,325 copying biobb_adapters/cwl/biobb_model/fix_backbone.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-09-18T13:50:29,327 copying biobb_adapters/cwl/biobb_model/fix_chirality.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-09-18T13:50:29,329 copying biobb_adapters/cwl/biobb_model/fix_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-09-18T13:50:29,331 copying biobb_adapters/cwl/biobb_model/fix_side_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-09-18T13:50:29,334 copying biobb_adapters/cwl/biobb_model/fix_ssbonds.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-09-18T13:50:29,336 copying biobb_adapters/cwl/biobb_model/mutate.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2025-09-18T13:50:29,338 creating build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,339 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,341 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_chainxseg.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,343 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_delhetatm.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,346 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_fetch.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,348 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_fixinsert.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,350 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_keepcoord.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,352 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_merge.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,354 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_mkensemble.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,356 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_reres.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,359 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_seg.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,361 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selaltloc.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,364 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selchain.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,366 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selres.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,369 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_splitmodel.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,371 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_splitseg.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,373 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_tidy.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,375 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_tofasta.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,378 copying biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_uniqname.cwl -> build/lib/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,380 creating build/lib/biobb_adapters/cwl/biobb_pmx 2025-09-18T13:50:29,381 copying biobb_adapters/cwl/biobb_pmx/pmxanalyse.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-09-18T13:50:29,384 copying biobb_adapters/cwl/biobb_pmx/pmxatom_mapping.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-09-18T13:50:29,386 copying biobb_adapters/cwl/biobb_pmx/pmxcreate_top.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-09-18T13:50:29,389 copying biobb_adapters/cwl/biobb_pmx/pmxgentop.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-09-18T13:50:29,391 copying biobb_adapters/cwl/biobb_pmx/pmxligand_hybrid.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-09-18T13:50:29,394 copying biobb_adapters/cwl/biobb_pmx/pmxmerge_ff.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-09-18T13:50:29,396 copying biobb_adapters/cwl/biobb_pmx/pmxmutate.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2025-09-18T13:50:29,398 creating build/lib/biobb_adapters/cwl/biobb_pytorch 2025-09-18T13:50:29,399 copying biobb_adapters/cwl/biobb_pytorch/apply_mdae.cwl -> build/lib/biobb_adapters/cwl/biobb_pytorch 2025-09-18T13:50:29,402 copying biobb_adapters/cwl/biobb_pytorch/train_mdae.cwl -> build/lib/biobb_adapters/cwl/biobb_pytorch 2025-09-18T13:50:29,404 creating build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:29,405 copying biobb_adapters/cwl/biobb_structure_utils/cat_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:29,408 copying biobb_adapters/cwl/biobb_structure_utils/closest_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:29,410 copying biobb_adapters/cwl/biobb_structure_utils/extract_atoms.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:29,412 copying biobb_adapters/cwl/biobb_structure_utils/extract_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:29,414 copying biobb_adapters/cwl/biobb_structure_utils/extract_heteroatoms.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:29,416 copying biobb_adapters/cwl/biobb_structure_utils/extract_model.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:29,418 copying biobb_adapters/cwl/biobb_structure_utils/extract_molecule.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:29,420 copying biobb_adapters/cwl/biobb_structure_utils/extract_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:29,422 copying biobb_adapters/cwl/biobb_structure_utils/remove_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:29,424 copying biobb_adapters/cwl/biobb_structure_utils/remove_molecules.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:29,426 copying biobb_adapters/cwl/biobb_structure_utils/remove_pdb_water.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:29,428 copying biobb_adapters/cwl/biobb_structure_utils/renumber_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:29,431 copying biobb_adapters/cwl/biobb_structure_utils/sort_gro_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:29,433 copying biobb_adapters/cwl/biobb_structure_utils/str_check_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:29,435 copying biobb_adapters/cwl/biobb_structure_utils/structure_check.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:29,437 creating build/lib/biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,438 copying biobb_adapters/cwl/biobb_vs/autodock_vina_run.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,440 copying biobb_adapters/cwl/biobb_vs/bindingsite.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,442 copying biobb_adapters/cwl/biobb_vs/box.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,444 copying biobb_adapters/cwl/biobb_vs/box_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,446 copying biobb_adapters/cwl/biobb_vs/extract_model_pdbqt.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,448 copying biobb_adapters/cwl/biobb_vs/fpocket.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,450 copying biobb_adapters/cwl/biobb_vs/fpocket_filter.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,453 copying biobb_adapters/cwl/biobb_vs/fpocket_run.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,455 copying biobb_adapters/cwl/biobb_vs/fpocket_select.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,457 creating build/lib/biobb_adapters/pycompss/biobb_common/generic/__pycache__ 2025-09-18T13:50:29,460 copying biobb_adapters/pycompss/biobb_common/generic/__pycache__/folder_test.cpython-310.pyc -> build/lib/biobb_adapters/pycompss/biobb_common/generic/__pycache__ 2025-09-18T13:50:29,462 creating build/lib/biobb_adapters/pycompss/biobb_flexdyn/flexdyn 2025-09-18T13:50:29,463 copying biobb_adapters/pycompss/biobb_flexdyn/flexdyn/concoord_disco.py -> build/lib/biobb_adapters/pycompss/biobb_flexdyn/flexdyn 2025-09-18T13:50:29,465 copying biobb_adapters/pycompss/biobb_flexdyn/flexdyn/concoord_dist.py -> build/lib/biobb_adapters/pycompss/biobb_flexdyn/flexdyn 2025-09-18T13:50:29,467 copying biobb_adapters/pycompss/biobb_flexdyn/flexdyn/imod_imc.py -> build/lib/biobb_adapters/pycompss/biobb_flexdyn/flexdyn 2025-09-18T13:50:29,469 copying biobb_adapters/pycompss/biobb_flexdyn/flexdyn/imod_imode.py -> build/lib/biobb_adapters/pycompss/biobb_flexdyn/flexdyn 2025-09-18T13:50:29,471 copying biobb_adapters/pycompss/biobb_flexdyn/flexdyn/imod_imove.py -> build/lib/biobb_adapters/pycompss/biobb_flexdyn/flexdyn 2025-09-18T13:50:29,474 copying biobb_adapters/pycompss/biobb_flexdyn/flexdyn/nolb_nma.py -> build/lib/biobb_adapters/pycompss/biobb_flexdyn/flexdyn 2025-09-18T13:50:29,476 copying biobb_adapters/pycompss/biobb_flexdyn/flexdyn/prody_anm.py -> build/lib/biobb_adapters/pycompss/biobb_flexdyn/flexdyn 2025-09-18T13:50:29,478 creating build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,478 copying biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_chain.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,481 copying biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_chainxseg.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,483 copying biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_delhetatm.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,485 copying biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_fetch.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,488 copying biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_fixinsert.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,490 copying biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_keepcoord.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,492 copying biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_merge.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,494 copying biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_mkensemble.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,497 copying biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_reres.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,499 copying biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_seg.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,501 copying biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_selaltloc.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,503 copying biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_selchain.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,505 copying biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_selres.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,507 copying biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_splitmodel.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,509 copying biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_splitseg.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,512 copying biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_tidy.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,514 copying biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_tofasta.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,516 copying biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_uniqname.py -> build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:29,518 creating build/lib/biobb_adapters/pycompss/biobb_mem/ambertools 2025-09-18T13:50:29,519 copying biobb_adapters/pycompss/biobb_mem/ambertools/cpptraj_density.py -> build/lib/biobb_adapters/pycompss/biobb_mem/ambertools 2025-09-18T13:50:29,521 creating build/lib/biobb_adapters/pycompss/biobb_mem/fatslim 2025-09-18T13:50:29,522 copying biobb_adapters/pycompss/biobb_mem/fatslim/fatslim_apl.py -> build/lib/biobb_adapters/pycompss/biobb_mem/fatslim 2025-09-18T13:50:29,524 copying biobb_adapters/pycompss/biobb_mem/fatslim/fatslim_membranes.py -> build/lib/biobb_adapters/pycompss/biobb_mem/fatslim 2025-09-18T13:50:29,526 creating build/lib/biobb_adapters/pycompss/biobb_mem/gromacs 2025-09-18T13:50:29,527 copying biobb_adapters/pycompss/biobb_mem/gromacs/gmx_order.py -> build/lib/biobb_adapters/pycompss/biobb_mem/gromacs 2025-09-18T13:50:29,530 creating build/lib/biobb_adapters/pycompss/biobb_mem/lipyphilic_biobb 2025-09-18T13:50:29,531 copying biobb_adapters/pycompss/biobb_mem/lipyphilic_biobb/lpp_assign_leaflets.py -> build/lib/biobb_adapters/pycompss/biobb_mem/lipyphilic_biobb 2025-09-18T13:50:29,533 copying biobb_adapters/pycompss/biobb_mem/lipyphilic_biobb/lpp_flip_flop.py -> build/lib/biobb_adapters/pycompss/biobb_mem/lipyphilic_biobb 2025-09-18T13:50:29,535 copying biobb_adapters/pycompss/biobb_mem/lipyphilic_biobb/lpp_zpositions.py -> build/lib/biobb_adapters/pycompss/biobb_mem/lipyphilic_biobb 2025-09-18T13:50:29,537 creating build/lib/biobb_adapters/pycompss/biobb_mem/mdanalysis_biobb 2025-09-18T13:50:29,538 copying biobb_adapters/pycompss/biobb_mem/mdanalysis_biobb/mda_hole.py -> build/lib/biobb_adapters/pycompss/biobb_mem/mdanalysis_biobb 2025-09-18T13:50:29,540 creating build/lib/biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:29,541 copying biobb_adapters/pycompss/biobb_haddock/haddock/capri_eval.py -> build/lib/biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:29,543 copying biobb_adapters/pycompss/biobb_haddock/haddock/clust_fcc.py -> build/lib/biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:29,545 copying biobb_adapters/pycompss/biobb_haddock/haddock/contact_map.py -> build/lib/biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:29,548 copying biobb_adapters/pycompss/biobb_haddock/haddock/em_ref.py -> build/lib/biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:29,550 copying biobb_adapters/pycompss/biobb_haddock/haddock/flex_ref.py -> build/lib/biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:29,552 copying biobb_adapters/pycompss/biobb_haddock/haddock/haddock3_extend.py -> build/lib/biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:29,554 copying biobb_adapters/pycompss/biobb_haddock/haddock/haddock3_run.py -> build/lib/biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:29,557 copying biobb_adapters/pycompss/biobb_haddock/haddock/rigid_body.py -> build/lib/biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:29,559 copying biobb_adapters/pycompss/biobb_haddock/haddock/sele_top.py -> build/lib/biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:29,561 copying biobb_adapters/pycompss/biobb_haddock/haddock/sele_top_clusts.py -> build/lib/biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:29,563 copying biobb_adapters/pycompss/biobb_haddock/haddock/topology.py -> build/lib/biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:29,566 creating build/lib/biobb_adapters/pycompss/biobb_haddock/haddock/__pycache__ 2025-09-18T13:50:29,567 copying biobb_adapters/pycompss/biobb_haddock/haddock/__pycache__/folder_test.cpython-310.pyc -> build/lib/biobb_adapters/pycompss/biobb_haddock/haddock/__pycache__ 2025-09-18T13:50:29,569 creating build/lib/biobb_adapters/pycompss/biobb_haddock/haddock_restraints 2025-09-18T13:50:29,570 copying biobb_adapters/pycompss/biobb_haddock/haddock_restraints/haddock3_accessibility.py -> build/lib/biobb_adapters/pycompss/biobb_haddock/haddock_restraints 2025-09-18T13:50:29,572 copying biobb_adapters/pycompss/biobb_haddock/haddock_restraints/haddock3_actpass_to_ambig.py -> build/lib/biobb_adapters/pycompss/biobb_haddock/haddock_restraints 2025-09-18T13:50:29,574 copying biobb_adapters/pycompss/biobb_haddock/haddock_restraints/haddock3_passive_from_active.py -> build/lib/biobb_adapters/pycompss/biobb_haddock/haddock_restraints 2025-09-18T13:50:29,577 copying biobb_adapters/pycompss/biobb_haddock/haddock_restraints/haddock3_restrain_bodies.py -> build/lib/biobb_adapters/pycompss/biobb_haddock/haddock_restraints 2025-09-18T13:50:29,579 creating build/lib/biobb_adapters/pycompss/biobb_cp2k/cp2k 2025-09-18T13:50:29,580 copying biobb_adapters/pycompss/biobb_cp2k/cp2k/cp2k_prep.py -> build/lib/biobb_adapters/pycompss/biobb_cp2k/cp2k 2025-09-18T13:50:29,583 copying biobb_adapters/pycompss/biobb_cp2k/cp2k/cp2k_run.py -> build/lib/biobb_adapters/pycompss/biobb_cp2k/cp2k 2025-09-18T13:50:29,585 creating build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:29,585 copying biobb_adapters/pycompss/biobb_gromacs/gromacs/editconf.py -> build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:29,588 copying biobb_adapters/pycompss/biobb_gromacs/gromacs/genion.py -> build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:29,590 copying biobb_adapters/pycompss/biobb_gromacs/gromacs/genrestr.py -> build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:29,592 copying biobb_adapters/pycompss/biobb_gromacs/gromacs/gmxselect.py -> build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:29,594 copying biobb_adapters/pycompss/biobb_gromacs/gromacs/grompp.py -> build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:29,596 copying biobb_adapters/pycompss/biobb_gromacs/gromacs/grompp_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:29,598 copying biobb_adapters/pycompss/biobb_gromacs/gromacs/make_ndx.py -> build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:29,600 copying biobb_adapters/pycompss/biobb_gromacs/gromacs/mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:29,603 copying biobb_adapters/pycompss/biobb_gromacs/gromacs/pdb2gmx.py -> build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:29,605 copying biobb_adapters/pycompss/biobb_gromacs/gromacs/solvate.py -> build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:29,607 copying biobb_adapters/pycompss/biobb_gromacs/gromacs/trjcat.py -> build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:29,609 creating build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs_extra 2025-09-18T13:50:29,610 copying biobb_adapters/pycompss/biobb_gromacs/gromacs_extra/append_ligand.py -> build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs_extra 2025-09-18T13:50:29,612 copying biobb_adapters/pycompss/biobb_gromacs/gromacs_extra/ndx2resttop.py -> build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs_extra 2025-09-18T13:50:29,614 creating build/lib/biobb_adapters/pycompss/biobb_pytorch/mdae 2025-09-18T13:50:29,615 copying biobb_adapters/pycompss/biobb_pytorch/mdae/apply_mdae.py -> build/lib/biobb_adapters/pycompss/biobb_pytorch/mdae 2025-09-18T13:50:29,618 copying biobb_adapters/pycompss/biobb_pytorch/mdae/train_mdae.py -> build/lib/biobb_adapters/pycompss/biobb_pytorch/mdae 2025-09-18T13:50:29,620 creating build/lib/biobb_adapters/pycompss/biobb_dna/backbone 2025-09-18T13:50:29,621 copying biobb_adapters/pycompss/biobb_dna/backbone/bipopulations.py -> build/lib/biobb_adapters/pycompss/biobb_dna/backbone 2025-09-18T13:50:29,624 copying biobb_adapters/pycompss/biobb_dna/backbone/canonicalag.py -> build/lib/biobb_adapters/pycompss/biobb_dna/backbone 2025-09-18T13:50:29,626 copying biobb_adapters/pycompss/biobb_dna/backbone/puckering.py -> build/lib/biobb_adapters/pycompss/biobb_dna/backbone 2025-09-18T13:50:29,628 creating build/lib/biobb_adapters/pycompss/biobb_dna/curvesplus 2025-09-18T13:50:29,629 copying biobb_adapters/pycompss/biobb_dna/curvesplus/biobb_canal.py -> build/lib/biobb_adapters/pycompss/biobb_dna/curvesplus 2025-09-18T13:50:29,631 copying biobb_adapters/pycompss/biobb_dna/curvesplus/biobb_canion.py -> build/lib/biobb_adapters/pycompss/biobb_dna/curvesplus 2025-09-18T13:50:29,633 copying biobb_adapters/pycompss/biobb_dna/curvesplus/biobb_curves.py -> build/lib/biobb_adapters/pycompss/biobb_dna/curvesplus 2025-09-18T13:50:29,635 copying biobb_adapters/pycompss/biobb_dna/curvesplus/canal_unzip.py -> build/lib/biobb_adapters/pycompss/biobb_dna/curvesplus 2025-09-18T13:50:29,637 creating build/lib/biobb_adapters/pycompss/biobb_dna/dna 2025-09-18T13:50:29,638 copying biobb_adapters/pycompss/biobb_dna/dna/dna_averages.py -> build/lib/biobb_adapters/pycompss/biobb_dna/dna 2025-09-18T13:50:29,640 copying biobb_adapters/pycompss/biobb_dna/dna/dna_bimodality.py -> build/lib/biobb_adapters/pycompss/biobb_dna/dna 2025-09-18T13:50:29,642 copying biobb_adapters/pycompss/biobb_dna/dna/dna_timeseries.py -> build/lib/biobb_adapters/pycompss/biobb_dna/dna 2025-09-18T13:50:29,644 copying biobb_adapters/pycompss/biobb_dna/dna/dna_timeseries_unzip.py -> build/lib/biobb_adapters/pycompss/biobb_dna/dna 2025-09-18T13:50:29,646 creating build/lib/biobb_adapters/pycompss/biobb_dna/interbp_correlations 2025-09-18T13:50:29,647 copying biobb_adapters/pycompss/biobb_dna/interbp_correlations/interbpcorr.py -> build/lib/biobb_adapters/pycompss/biobb_dna/interbp_correlations 2025-09-18T13:50:29,650 copying biobb_adapters/pycompss/biobb_dna/interbp_correlations/interhpcorr.py -> build/lib/biobb_adapters/pycompss/biobb_dna/interbp_correlations 2025-09-18T13:50:29,652 copying biobb_adapters/pycompss/biobb_dna/interbp_correlations/interseqcorr.py -> build/lib/biobb_adapters/pycompss/biobb_dna/interbp_correlations 2025-09-18T13:50:29,654 creating build/lib/biobb_adapters/pycompss/biobb_dna/intrabp_correlations 2025-09-18T13:50:29,655 copying biobb_adapters/pycompss/biobb_dna/intrabp_correlations/intrabpcorr.py -> build/lib/biobb_adapters/pycompss/biobb_dna/intrabp_correlations 2025-09-18T13:50:29,657 copying biobb_adapters/pycompss/biobb_dna/intrabp_correlations/intrahpcorr.py -> build/lib/biobb_adapters/pycompss/biobb_dna/intrabp_correlations 2025-09-18T13:50:29,659 copying biobb_adapters/pycompss/biobb_dna/intrabp_correlations/intraseqcorr.py -> build/lib/biobb_adapters/pycompss/biobb_dna/intrabp_correlations 2025-09-18T13:50:29,662 creating build/lib/biobb_adapters/pycompss/biobb_dna/stiffness 2025-09-18T13:50:29,663 copying biobb_adapters/pycompss/biobb_dna/stiffness/average_stiffness.py -> build/lib/biobb_adapters/pycompss/biobb_dna/stiffness 2025-09-18T13:50:29,665 copying biobb_adapters/pycompss/biobb_dna/stiffness/basepair_stiffness.py -> build/lib/biobb_adapters/pycompss/biobb_dna/stiffness 2025-09-18T13:50:29,667 creating build/lib/biobb_adapters/pycompss/biobb_pmx/pmxbiobb 2025-09-18T13:50:29,668 copying biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxanalyse.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmxbiobb 2025-09-18T13:50:29,670 copying biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxatom_mapping.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmxbiobb 2025-09-18T13:50:29,673 copying biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxcreate_top.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmxbiobb 2025-09-18T13:50:29,675 copying biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxgentop.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmxbiobb 2025-09-18T13:50:29,677 copying biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxligand_hybrid.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmxbiobb 2025-09-18T13:50:29,679 copying biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxmerge_ff.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmxbiobb 2025-09-18T13:50:29,682 copying biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxmutate.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmxbiobb 2025-09-18T13:50:29,684 creating build/lib/biobb_adapters/pycompss/biobb_godmd/godmd 2025-09-18T13:50:29,685 copying biobb_adapters/pycompss/biobb_godmd/godmd/godmd_prep.py -> build/lib/biobb_adapters/pycompss/biobb_godmd/godmd 2025-09-18T13:50:29,687 copying biobb_adapters/pycompss/biobb_godmd/godmd/godmd_run.py -> build/lib/biobb_adapters/pycompss/biobb_godmd/godmd 2025-09-18T13:50:29,689 creating build/lib/biobb_adapters/pycompss/biobb_bioml/bioml 2025-09-18T13:50:29,690 copying biobb_adapters/pycompss/biobb_bioml/bioml/ensemble.py -> build/lib/biobb_adapters/pycompss/biobb_bioml/bioml 2025-09-18T13:50:29,692 copying biobb_adapters/pycompss/biobb_bioml/bioml/feature_extraction.py -> build/lib/biobb_adapters/pycompss/biobb_bioml/bioml 2025-09-18T13:50:29,694 copying biobb_adapters/pycompss/biobb_bioml/bioml/feature_selection.py -> build/lib/biobb_adapters/pycompss/biobb_bioml/bioml 2025-09-18T13:50:29,696 copying biobb_adapters/pycompss/biobb_bioml/bioml/generate_model.py -> build/lib/biobb_adapters/pycompss/biobb_bioml/bioml 2025-09-18T13:50:29,698 copying biobb_adapters/pycompss/biobb_bioml/bioml/generate_pssm.py -> build/lib/biobb_adapters/pycompss/biobb_bioml/bioml 2025-09-18T13:50:29,700 copying biobb_adapters/pycompss/biobb_bioml/bioml/model_training.py -> build/lib/biobb_adapters/pycompss/biobb_bioml/bioml 2025-09-18T13:50:29,702 copying biobb_adapters/pycompss/biobb_bioml/bioml/outlier.py -> build/lib/biobb_adapters/pycompss/biobb_bioml/bioml 2025-09-18T13:50:29,704 copying biobb_adapters/pycompss/biobb_bioml/bioml/predict.py -> build/lib/biobb_adapters/pycompss/biobb_bioml/bioml 2025-09-18T13:50:29,706 creating build/lib/biobb_adapters/pycompss/biobb_flexserv/flexserv 2025-09-18T13:50:29,707 copying biobb_adapters/pycompss/biobb_flexserv/flexserv/bd_run.py -> build/lib/biobb_adapters/pycompss/biobb_flexserv/flexserv 2025-09-18T13:50:29,709 copying biobb_adapters/pycompss/biobb_flexserv/flexserv/dmd_run.py -> build/lib/biobb_adapters/pycompss/biobb_flexserv/flexserv 2025-09-18T13:50:29,712 copying biobb_adapters/pycompss/biobb_flexserv/flexserv/nma_run.py -> build/lib/biobb_adapters/pycompss/biobb_flexserv/flexserv 2025-09-18T13:50:29,713 creating build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:29,714 copying biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_animate.py -> build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:29,717 copying biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_bfactor.py -> build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:29,719 copying biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_collectivity.py -> build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:29,721 copying biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_evecs.py -> build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:29,723 copying biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_hinges.py -> build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:29,725 copying biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_info.py -> build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:29,728 copying biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_lindemann.py -> build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:29,731 copying biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_similarity.py -> build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:29,734 copying biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_stiffness.py -> build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:29,737 copying biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_unzip.py -> build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:29,740 copying biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_zip.py -> build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:29,743 creating build/lib/biobb_adapters/pycompss/biobb_asitedesign/asitedesign 2025-09-18T13:50:29,744 copying biobb_adapters/pycompss/biobb_asitedesign/asitedesign/asitedesign.py -> build/lib/biobb_adapters/pycompss/biobb_asitedesign/asitedesign 2025-09-18T13:50:29,798 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-18T13:50:29,799 !! 2025-09-18T13:50:29,800 ******************************************************************************** 2025-09-18T13:50:29,801 Please avoid running ``setup.py`` directly. 2025-09-18T13:50:29,801 Instead, use pypa/build, pypa/installer or other 2025-09-18T13:50:29,802 standards-based tools. 2025-09-18T13:50:29,803 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-18T13:50:29,803 or your builds will no longer be supported. 2025-09-18T13:50:29,804 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-18T13:50:29,804 ******************************************************************************** 2025-09-18T13:50:29,805 !! 2025-09-18T13:50:29,806 self.initialize_options() 2025-09-18T13:50:29,826 installing to build/bdist.linux-armv7l/wheel 2025-09-18T13:50:29,827 running install 2025-09-18T13:50:29,850 running install_lib 2025-09-18T13:50:29,877 creating build/bdist.linux-armv7l/wheel 2025-09-18T13:50:29,879 creating build/bdist.linux-armv7l/wheel/biobb_adapters 2025-09-18T13:50:29,880 copying build/lib/biobb_adapters/py.typed -> build/bdist.linux-armv7l/wheel/./biobb_adapters 2025-09-18T13:50:29,883 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl 2025-09-18T13:50:29,884 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,885 copying build/lib/biobb_adapters/cwl/biobb_md/make_ndx.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,887 copying build/lib/biobb_adapters/cwl/biobb_md/mdrun.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,890 copying build/lib/biobb_adapters/cwl/biobb_md/grompp_mdrun.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,892 copying build/lib/biobb_adapters/cwl/biobb_md/gmxselect.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,894 copying build/lib/biobb_adapters/cwl/biobb_md/pdb2gmx.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,896 copying build/lib/biobb_adapters/cwl/biobb_md/ndx2resttop.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,898 copying build/lib/biobb_adapters/cwl/biobb_md/editconf.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,900 copying build/lib/biobb_adapters/cwl/biobb_md/solvate.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,902 copying build/lib/biobb_adapters/cwl/biobb_md/genion.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,904 copying build/lib/biobb_adapters/cwl/biobb_md/grompp.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,906 copying build/lib/biobb_adapters/cwl/biobb_md/append_ligand.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,908 copying build/lib/biobb_adapters/cwl/biobb_md/genrestr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_md 2025-09-18T13:50:29,911 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,912 copying build/lib/biobb_adapters/cwl/biobb_vs/autodock_vina_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,915 copying build/lib/biobb_adapters/cwl/biobb_vs/box_residues.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,917 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket_filter.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,919 copying build/lib/biobb_adapters/cwl/biobb_vs/bindingsite.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,921 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket_select.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,923 copying build/lib/biobb_adapters/cwl/biobb_vs/extract_model_pdbqt.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,925 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,927 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,928 copying build/lib/biobb_adapters/cwl/biobb_vs/box.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_vs 2025-09-18T13:50:29,931 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_flexdyn 2025-09-18T13:50:29,932 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/imod_imove.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-09-18T13:50:29,934 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/nolb_nma.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-09-18T13:50:29,936 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/imod_imc.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-09-18T13:50:29,938 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/imod_imode.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-09-18T13:50:29,942 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/concoord_dist.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-09-18T13:50:29,944 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/prody_anm.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-09-18T13:50:29,946 copying build/lib/biobb_adapters/cwl/biobb_flexdyn/concoord_disco.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexdyn 2025-09-18T13:50:29,948 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,949 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selchain.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,951 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_splitmodel.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,953 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_tidy.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,955 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_fixinsert.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,957 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_chainxseg.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,960 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_uniqname.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,962 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_mkensemble.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,964 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_reres.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,966 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_keepcoord.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,968 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_delhetatm.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,970 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_splitseg.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,972 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_seg.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,974 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_fetch.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,975 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_chain.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,977 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_tofasta.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,979 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selaltloc.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,981 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selres.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,982 copying build/lib/biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_merge.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pdb_tools 2025-09-18T13:50:29,985 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_mem 2025-09-18T13:50:29,986 copying build/lib/biobb_adapters/cwl/biobb_mem/mda_hole.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-09-18T13:50:29,988 copying build/lib/biobb_adapters/cwl/biobb_mem/cpptraj_density.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-09-18T13:50:29,990 copying build/lib/biobb_adapters/cwl/biobb_mem/fatslim_membranes.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-09-18T13:50:29,992 copying build/lib/biobb_adapters/cwl/biobb_mem/lpp_flip_flop.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-09-18T13:50:29,994 copying build/lib/biobb_adapters/cwl/biobb_mem/gmx_order.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-09-18T13:50:29,995 copying build/lib/biobb_adapters/cwl/biobb_mem/fatslim_apl.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-09-18T13:50:29,997 copying build/lib/biobb_adapters/cwl/biobb_mem/lpp_zpositions.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-09-18T13:50:29,999 copying build/lib/biobb_adapters/cwl/biobb_mem/lpp_assign_leaflets.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_mem 2025-09-18T13:50:30,002 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:30,003 copying build/lib/biobb_adapters/cwl/biobb_haddock/haddock3_actpass_to_ambig.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:30,005 copying build/lib/biobb_adapters/cwl/biobb_haddock/flex_ref.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:30,007 copying build/lib/biobb_adapters/cwl/biobb_haddock/haddock3_extend.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:30,009 copying build/lib/biobb_adapters/cwl/biobb_haddock/topology.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:30,011 copying build/lib/biobb_adapters/cwl/biobb_haddock/haddock3_passive_from_active.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:30,013 copying build/lib/biobb_adapters/cwl/biobb_haddock/rigid_body.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:30,015 copying build/lib/biobb_adapters/cwl/biobb_haddock/haddock3_restrain_bodies.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:30,017 copying build/lib/biobb_adapters/cwl/biobb_haddock/sele_top_clusts.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:30,019 copying build/lib/biobb_adapters/cwl/biobb_haddock/haddock3_accessibility.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:30,021 copying build/lib/biobb_adapters/cwl/biobb_haddock/sele_top.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:30,023 copying build/lib/biobb_adapters/cwl/biobb_haddock/clust_fcc.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:30,025 copying build/lib/biobb_adapters/cwl/biobb_haddock/em_ref.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:30,027 copying build/lib/biobb_adapters/cwl/biobb_haddock/capri_eval.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:30,029 copying build/lib/biobb_adapters/cwl/biobb_haddock/haddock3_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:30,031 copying build/lib/biobb_adapters/cwl/biobb_haddock/contact_map.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_haddock 2025-09-18T13:50:30,034 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:30,035 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_remove_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:30,037 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_ac.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:30,039 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_cns.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:30,041 copying build/lib/biobb_adapters/cwl/biobb_chemistry/reduce_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:30,043 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:30,045 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_convert_amber_to_gmx.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:30,046 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_convert.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:30,048 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx_opls.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:30,050 copying build/lib/biobb_adapters/cwl/biobb_chemistry/reduce_remove_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:30,052 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_minimize.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:30,054 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_chemistry 2025-09-18T13:50:30,057 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cp2k 2025-09-18T13:50:30,058 copying build/lib/biobb_adapters/cwl/biobb_cp2k/cp2k_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cp2k 2025-09-18T13:50:30,060 copying build/lib/biobb_adapters/cwl/biobb_cp2k/cp2k_prep.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cp2k 2025-09-18T13:50:30,062 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:30,063 copying build/lib/biobb_adapters/cwl/biobb_gromacs/make_ndx.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:30,066 copying build/lib/biobb_adapters/cwl/biobb_gromacs/mdrun.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:30,068 copying build/lib/biobb_adapters/cwl/biobb_gromacs/grompp_mdrun.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:30,070 copying build/lib/biobb_adapters/cwl/biobb_gromacs/gmxselect.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:30,072 copying build/lib/biobb_adapters/cwl/biobb_gromacs/pdb2gmx.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:30,074 copying build/lib/biobb_adapters/cwl/biobb_gromacs/trjcat.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:30,076 copying build/lib/biobb_adapters/cwl/biobb_gromacs/ndx2resttop.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:30,078 copying build/lib/biobb_adapters/cwl/biobb_gromacs/editconf.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:30,079 copying build/lib/biobb_adapters/cwl/biobb_gromacs/solvate.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:30,081 copying build/lib/biobb_adapters/cwl/biobb_gromacs/genion.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:30,083 copying build/lib/biobb_adapters/cwl/biobb_gromacs/grompp.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:30,085 copying build/lib/biobb_adapters/cwl/biobb_gromacs/append_ligand.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:30,087 copying build/lib/biobb_adapters/cwl/biobb_gromacs/genrestr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_gromacs 2025-09-18T13:50:30,090 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,091 copying build/lib/biobb_adapters/cwl/biobb_ml/pls_components.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,093 copying build/lib/biobb_adapters/cwl/biobb_ml/decision_tree.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,095 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering_predict.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,097 copying build/lib/biobb_adapters/cwl/biobb_ml/scale_columns.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,099 copying build/lib/biobb_adapters/cwl/biobb_ml/undersampling.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,100 copying build/lib/biobb_adapters/cwl/biobb_ml/random_forest_classifier.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,103 copying build/lib/biobb_adapters/cwl/biobb_ml/polynomial_regression.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,105 copying build/lib/biobb_adapters/cwl/biobb_ml/random_forest_regressor.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,107 copying build/lib/biobb_adapters/cwl/biobb_ml/pls_regression.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,109 copying build/lib/biobb_adapters/cwl/biobb_ml/spectral_clustering.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,111 copying build/lib/biobb_adapters/cwl/biobb_ml/classification_neural_network.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,112 copying build/lib/biobb_adapters/cwl/biobb_ml/pairwise_comparison.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,114 copying build/lib/biobb_adapters/cwl/biobb_ml/autoencoder_neural_network.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,117 copying build/lib/biobb_adapters/cwl/biobb_ml/principal_component.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,119 copying build/lib/biobb_adapters/cwl/biobb_ml/support_vector_machine.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,121 copying build/lib/biobb_adapters/cwl/biobb_ml/regression_neural_network.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,123 copying build/lib/biobb_adapters/cwl/biobb_ml/k_means_coefficient.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,125 copying build/lib/biobb_adapters/cwl/biobb_ml/k_means.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,127 copying build/lib/biobb_adapters/cwl/biobb_ml/dummy_variables.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,129 copying build/lib/biobb_adapters/cwl/biobb_ml/resampling.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,130 copying build/lib/biobb_adapters/cwl/biobb_ml/agglomerative_coefficient.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,132 copying build/lib/biobb_adapters/cwl/biobb_ml/drop_columns.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,134 copying build/lib/biobb_adapters/cwl/biobb_ml/recurrent_neural_network.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,136 copying build/lib/biobb_adapters/cwl/biobb_ml/spectral_coefficient.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,138 copying build/lib/biobb_adapters/cwl/biobb_ml/k_neighbors.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,140 copying build/lib/biobb_adapters/cwl/biobb_ml/logistic_regression.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,142 copying build/lib/biobb_adapters/cwl/biobb_ml/k_neighbors_coefficient.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,144 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_network_decode.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,146 copying build/lib/biobb_adapters/cwl/biobb_ml/linear_regression.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,148 copying build/lib/biobb_adapters/cwl/biobb_ml/regression_predict.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,150 copying build/lib/biobb_adapters/cwl/biobb_ml/dbscan.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,152 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_network_predict.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,153 copying build/lib/biobb_adapters/cwl/biobb_ml/oversampling.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,155 copying build/lib/biobb_adapters/cwl/biobb_ml/dendrogram.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,157 copying build/lib/biobb_adapters/cwl/biobb_ml/classification_predict.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,159 copying build/lib/biobb_adapters/cwl/biobb_ml/agglomerative_clustering.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,161 copying build/lib/biobb_adapters/cwl/biobb_ml/correlation_matrix.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,163 copying build/lib/biobb_adapters/cwl/biobb_ml/map_variables.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_ml 2025-09-18T13:50:30,166 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:30,167 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:30,169 copying build/lib/biobb_adapters/cwl/biobb_cmip/titration.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:30,171 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip_prepare_pdb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:30,173 copying build/lib/biobb_adapters/cwl/biobb_cmip/prepare_pdb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:30,175 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip_titration.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:30,177 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:30,180 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip_ignore_residues.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:30,182 copying build/lib/biobb_adapters/cwl/biobb_cmip/ignore_residues.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:30,183 copying build/lib/biobb_adapters/cwl/biobb_cmip/prepare_structure.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:30,185 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip_prepare_structure.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_cmip 2025-09-18T13:50:30,188 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,189 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_rgyr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,191 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_rms.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,194 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_energy.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,195 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str_ens.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,197 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_slice.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,199 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_image.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,201 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_dry.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,203 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_mask.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,205 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_rms.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,207 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_trjconv_trj.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,209 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_bfactor.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,212 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_snapshot.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,214 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_cluster.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,216 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_convert.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,218 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_rgyr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,220 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_image.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,222 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_rmsf.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,224 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,226 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_average.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,228 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_strip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_analysis 2025-09-18T13:50:30,231 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2025-09-18T13:50:30,232 copying build/lib/biobb_adapters/cwl/biobb_model/fix_pdb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-09-18T13:50:30,234 copying build/lib/biobb_adapters/cwl/biobb_model/fix_side_chain.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-09-18T13:50:30,236 copying build/lib/biobb_adapters/cwl/biobb_model/mutate.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-09-18T13:50:30,238 copying build/lib/biobb_adapters/cwl/biobb_model/checking_log.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-09-18T13:50:30,239 copying build/lib/biobb_adapters/cwl/biobb_model/fix_altlocs.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-09-18T13:50:30,242 copying build/lib/biobb_adapters/cwl/biobb_model/fix_chirality.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-09-18T13:50:30,243 copying build/lib/biobb_adapters/cwl/biobb_model/fix_ssbonds.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-09-18T13:50:30,246 copying build/lib/biobb_adapters/cwl/biobb_model/fix_backbone.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-09-18T13:50:30,248 copying build/lib/biobb_adapters/cwl/biobb_model/fix_amides.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_model 2025-09-18T13:50:30,250 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pytorch 2025-09-18T13:50:30,251 copying build/lib/biobb_adapters/cwl/biobb_pytorch/apply_mdae.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pytorch 2025-09-18T13:50:30,253 copying build/lib/biobb_adapters/cwl/biobb_pytorch/train_mdae.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pytorch 2025-09-18T13:50:30,256 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,257 copying build/lib/biobb_adapters/cwl/biobb_dna/interbpcorr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,260 copying build/lib/biobb_adapters/cwl/biobb_dna/biobb_canion.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,261 copying build/lib/biobb_adapters/cwl/biobb_dna/puckering.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,263 copying build/lib/biobb_adapters/cwl/biobb_dna/biobb_curves.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,265 copying build/lib/biobb_adapters/cwl/biobb_dna/biobb_canal.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,267 copying build/lib/biobb_adapters/cwl/biobb_dna/intrabpcorr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,269 copying build/lib/biobb_adapters/cwl/biobb_dna/interhpcorr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,272 copying build/lib/biobb_adapters/cwl/biobb_dna/bipopulations.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,274 copying build/lib/biobb_adapters/cwl/biobb_dna/average_stiffness.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,276 copying build/lib/biobb_adapters/cwl/biobb_dna/intraseqcorr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,278 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_averages.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,280 copying build/lib/biobb_adapters/cwl/biobb_dna/interseqcorr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,282 copying build/lib/biobb_adapters/cwl/biobb_dna/canonicalag.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,285 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_timeseries_unzip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,287 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_bimodality.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,289 copying build/lib/biobb_adapters/cwl/biobb_dna/intrahpcorr.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,291 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_timeseries.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,293 copying build/lib/biobb_adapters/cwl/biobb_dna/basepair_stiffness.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,295 copying build/lib/biobb_adapters/cwl/biobb_dna/canal_unzip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_dna 2025-09-18T13:50:30,298 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2025-09-18T13:50:30,299 copying build/lib/biobb_adapters/cwl/biobb_io/api_binding_site.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-09-18T13:50:30,301 copying build/lib/biobb_adapters/cwl/biobb_io/canonical_fasta.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-09-18T13:50:30,303 copying build/lib/biobb_adapters/cwl/biobb_io/pdb_variants.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-09-18T13:50:30,305 copying build/lib/biobb_adapters/cwl/biobb_io/alphafold.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-09-18T13:50:30,307 copying build/lib/biobb_adapters/cwl/biobb_io/mmcif.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-09-18T13:50:30,308 copying build/lib/biobb_adapters/cwl/biobb_io/structure_info.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-09-18T13:50:30,310 copying build/lib/biobb_adapters/cwl/biobb_io/memprotmd_sim.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-09-18T13:50:30,312 copying build/lib/biobb_adapters/cwl/biobb_io/drugbank.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-09-18T13:50:30,314 copying build/lib/biobb_adapters/cwl/biobb_io/memprotmd_sim_search.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-09-18T13:50:30,315 copying build/lib/biobb_adapters/cwl/biobb_io/ideal_sdf.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-09-18T13:50:30,317 copying build/lib/biobb_adapters/cwl/biobb_io/pdb_cluster_zip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-09-18T13:50:30,319 copying build/lib/biobb_adapters/cwl/biobb_io/ligand.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-09-18T13:50:30,321 copying build/lib/biobb_adapters/cwl/biobb_io/pdb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-09-18T13:50:30,323 copying build/lib/biobb_adapters/cwl/biobb_io/memprotmd_sim_list.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-09-18T13:50:30,325 copying build/lib/biobb_adapters/cwl/biobb_io/mddb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_io 2025-09-18T13:50:30,327 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2025-09-18T13:50:30,328 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxmerge_ff.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-09-18T13:50:30,330 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxatom_mapping.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-09-18T13:50:30,333 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxgentop.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-09-18T13:50:30,335 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxanalyse.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-09-18T13:50:30,336 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxligand_hybrid.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-09-18T13:50:30,338 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxmutate.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-09-18T13:50:30,340 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxcreate_top.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_pmx 2025-09-18T13:50:30,342 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_godmd 2025-09-18T13:50:30,343 copying build/lib/biobb_adapters/cwl/biobb_godmd/godmd_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_godmd 2025-09-18T13:50:30,346 copying build/lib/biobb_adapters/cwl/biobb_godmd/godmd_prep.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_godmd 2025-09-18T13:50:30,348 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:30,349 copying build/lib/biobb_adapters/cwl/biobb_flexserv/dmd_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:30,351 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_evecs.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:30,353 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_collectivity.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:30,355 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_unzip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:30,357 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_hinges.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:30,359 copying build/lib/biobb_adapters/cwl/biobb_flexserv/bd_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:30,361 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_similarity.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:30,363 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_zip.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:30,365 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_info.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:30,366 copying build/lib/biobb_adapters/cwl/biobb_flexserv/nma_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:30,368 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_bfactor.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:30,370 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_stiffness.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:30,372 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_lindemann.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:30,374 copying build/lib/biobb_adapters/cwl/biobb_flexserv/pcz_animate.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_flexserv 2025-09-18T13:50:30,376 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:30,377 copying build/lib/biobb_adapters/cwl/biobb_amber/parmed_cpinutil.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:30,379 copying build/lib/biobb_adapters/cwl/biobb_amber/nab_build_dna_structure.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:30,381 copying build/lib/biobb_adapters/cwl/biobb_amber/parmed_hmassrepartition.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:30,383 copying build/lib/biobb_adapters/cwl/biobb_amber/sander_mdrun.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:30,385 copying build/lib/biobb_adapters/cwl/biobb_amber/process_mdout.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:30,387 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_gen_top.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:30,389 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_add_ions.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:30,392 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_build_linear_structure.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:30,394 copying build/lib/biobb_adapters/cwl/biobb_amber/cphstats_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:30,397 copying build/lib/biobb_adapters/cwl/biobb_amber/cpptraj_randomize_ions.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:30,399 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_solvate.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:30,402 copying build/lib/biobb_adapters/cwl/biobb_amber/pdb4amber_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:30,404 copying build/lib/biobb_adapters/cwl/biobb_amber/amber_to_pdb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:30,406 copying build/lib/biobb_adapters/cwl/biobb_amber/cestats_run.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:30,409 copying build/lib/biobb_adapters/cwl/biobb_amber/process_minout.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:30,411 copying build/lib/biobb_adapters/cwl/biobb_amber/pmemd_mdrun.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_amber 2025-09-18T13:50:30,414 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:30,416 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/structure_check.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:30,418 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_atoms.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:30,420 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/renumber_structure.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:30,423 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/remove_molecules.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:30,425 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/closest_residues.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:30,427 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/remove_ligand.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:30,430 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_residues.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:30,432 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_model.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:30,435 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_chain.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:30,437 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/cat_pdb.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:30,439 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_heteroatoms.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:30,441 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/str_check_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:30,444 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/remove_pdb_water.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:30,446 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/sort_gro_residues.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:30,448 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_molecule.cwl -> build/bdist.linux-armv7l/wheel/./biobb_adapters/cwl/biobb_structure_utils 2025-09-18T13:50:30,450 copying build/lib/biobb_adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters 2025-09-18T13:50:30,454 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss 2025-09-18T13:50:30,456 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md 2025-09-18T13:50:30,458 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-09-18T13:50:30,459 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-09-18T13:50:30,461 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-09-18T13:50:30,464 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-09-18T13:50:30,466 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-09-18T13:50:30,468 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs_extra 2025-09-18T13:50:30,471 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:30,472 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/gmxselect.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:30,475 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/solvate.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:30,477 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/genion.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:30,479 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/grompp.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:30,482 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/editconf.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:30,484 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/pdb2gmx.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:30,486 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:30,488 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/genrestr.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:30,490 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/make_ndx.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:30,492 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/grompp_mdrun.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:30,494 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/mdrun.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md/gromacs 2025-09-18T13:50:30,496 copying build/lib/biobb_adapters/pycompss/biobb_md/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_md 2025-09-18T13:50:30,498 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs 2025-09-18T13:50:30,499 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/vina 2025-09-18T13:50:30,500 copying build/lib/biobb_adapters/pycompss/biobb_vs/vina/autodock_vina.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/vina 2025-09-18T13:50:30,502 copying build/lib/biobb_adapters/pycompss/biobb_vs/vina/autodock_vina_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/vina 2025-09-18T13:50:30,504 copying build/lib/biobb_adapters/pycompss/biobb_vs/vina/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/vina 2025-09-18T13:50:30,506 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2025-09-18T13:50:30,507 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/bindingsite.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/utils 2025-09-18T13:50:30,509 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/box_residues.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/utils 2025-09-18T13:50:30,511 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/extract_model_pdbqt.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/utils 2025-09-18T13:50:30,513 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/box.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/utils 2025-09-18T13:50:30,515 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/utils 2025-09-18T13:50:30,517 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2025-09-18T13:50:30,518 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/fpocket 2025-09-18T13:50:30,520 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/fpocket 2025-09-18T13:50:30,521 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/fpocket 2025-09-18T13:50:30,523 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_select.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/fpocket 2025-09-18T13:50:30,525 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_filter.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs/fpocket 2025-09-18T13:50:30,527 copying build/lib/biobb_adapters/pycompss/biobb_vs/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_vs 2025-09-18T13:50:30,528 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_flexdyn 2025-09-18T13:50:30,529 copying build/lib/biobb_adapters/pycompss/biobb_flexdyn/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexdyn 2025-09-18T13:50:30,532 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_flexdyn/flexdyn 2025-09-18T13:50:30,533 copying build/lib/biobb_adapters/pycompss/biobb_flexdyn/flexdyn/prody_anm.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexdyn/flexdyn 2025-09-18T13:50:30,535 copying build/lib/biobb_adapters/pycompss/biobb_flexdyn/flexdyn/concoord_disco.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexdyn/flexdyn 2025-09-18T13:50:30,536 copying build/lib/biobb_adapters/pycompss/biobb_flexdyn/flexdyn/imod_imove.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexdyn/flexdyn 2025-09-18T13:50:30,538 copying build/lib/biobb_adapters/pycompss/biobb_flexdyn/flexdyn/concoord_dist.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexdyn/flexdyn 2025-09-18T13:50:30,540 copying build/lib/biobb_adapters/pycompss/biobb_flexdyn/flexdyn/imod_imode.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexdyn/flexdyn 2025-09-18T13:50:30,542 copying build/lib/biobb_adapters/pycompss/biobb_flexdyn/flexdyn/nolb_nma.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexdyn/flexdyn 2025-09-18T13:50:30,543 copying build/lib/biobb_adapters/pycompss/biobb_flexdyn/flexdyn/imod_imc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexdyn/flexdyn 2025-09-18T13:50:30,545 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pdb_tools 2025-09-18T13:50:30,547 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,548 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_mkensemble.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,550 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_delhetatm.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,551 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_merge.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,553 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_tofasta.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,555 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_selchain.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,557 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_chain.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,558 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_selres.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,560 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_chainxseg.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,562 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_seg.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,563 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_selaltloc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,565 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_fetch.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,567 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_tidy.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,569 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_uniqname.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,571 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_reres.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,572 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_splitmodel.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,574 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_splitseg.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,576 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_fixinsert.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,578 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_keepcoord.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools 2025-09-18T13:50:30,579 copying build/lib/biobb_adapters/pycompss/biobb_pdb_tools/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pdb_tools 2025-09-18T13:50:30,581 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_mem 2025-09-18T13:50:30,583 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_mem/mdanalysis_biobb 2025-09-18T13:50:30,584 copying build/lib/biobb_adapters/pycompss/biobb_mem/mdanalysis_biobb/mda_hole.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_mem/mdanalysis_biobb 2025-09-18T13:50:30,586 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_mem/gromacs 2025-09-18T13:50:30,587 copying build/lib/biobb_adapters/pycompss/biobb_mem/gromacs/gmx_order.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_mem/gromacs 2025-09-18T13:50:30,590 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_mem/ambertools 2025-09-18T13:50:30,591 copying build/lib/biobb_adapters/pycompss/biobb_mem/ambertools/cpptraj_density.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_mem/ambertools 2025-09-18T13:50:30,593 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_mem/lipyphilic_biobb 2025-09-18T13:50:30,594 copying build/lib/biobb_adapters/pycompss/biobb_mem/lipyphilic_biobb/lpp_flip_flop.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_mem/lipyphilic_biobb 2025-09-18T13:50:30,596 copying build/lib/biobb_adapters/pycompss/biobb_mem/lipyphilic_biobb/lpp_assign_leaflets.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_mem/lipyphilic_biobb 2025-09-18T13:50:30,598 copying build/lib/biobb_adapters/pycompss/biobb_mem/lipyphilic_biobb/lpp_zpositions.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_mem/lipyphilic_biobb 2025-09-18T13:50:30,599 copying build/lib/biobb_adapters/pycompss/biobb_mem/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_mem 2025-09-18T13:50:30,601 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_mem/fatslim 2025-09-18T13:50:30,602 copying build/lib/biobb_adapters/pycompss/biobb_mem/fatslim/fatslim_apl.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_mem/fatslim 2025-09-18T13:50:30,604 copying build/lib/biobb_adapters/pycompss/biobb_mem/fatslim/fatslim_membranes.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_mem/fatslim 2025-09-18T13:50:30,607 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_haddock 2025-09-18T13:50:30,608 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:30,610 copying build/lib/biobb_adapters/pycompss/biobb_haddock/haddock/haddock3_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:30,612 copying build/lib/biobb_adapters/pycompss/biobb_haddock/haddock/haddock3_extend.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:30,614 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_haddock/haddock/__pycache__ 2025-09-18T13:50:30,615 copying build/lib/biobb_adapters/pycompss/biobb_haddock/haddock/__pycache__/folder_test.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_haddock/haddock/__pycache__ 2025-09-18T13:50:30,617 copying build/lib/biobb_adapters/pycompss/biobb_haddock/haddock/contact_map.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:30,619 copying build/lib/biobb_adapters/pycompss/biobb_haddock/haddock/capri_eval.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:30,621 copying build/lib/biobb_adapters/pycompss/biobb_haddock/haddock/em_ref.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:30,623 copying build/lib/biobb_adapters/pycompss/biobb_haddock/haddock/rigid_body.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:30,625 copying build/lib/biobb_adapters/pycompss/biobb_haddock/haddock/sele_top.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:30,626 copying build/lib/biobb_adapters/pycompss/biobb_haddock/haddock/flex_ref.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:30,628 copying build/lib/biobb_adapters/pycompss/biobb_haddock/haddock/sele_top_clusts.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:30,630 copying build/lib/biobb_adapters/pycompss/biobb_haddock/haddock/topology.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:30,632 copying build/lib/biobb_adapters/pycompss/biobb_haddock/haddock/clust_fcc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_haddock/haddock 2025-09-18T13:50:30,634 copying build/lib/biobb_adapters/pycompss/biobb_haddock/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_haddock 2025-09-18T13:50:30,636 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_haddock/haddock_restraints 2025-09-18T13:50:30,637 copying build/lib/biobb_adapters/pycompss/biobb_haddock/haddock_restraints/haddock3_restrain_bodies.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_haddock/haddock_restraints 2025-09-18T13:50:30,639 copying build/lib/biobb_adapters/pycompss/biobb_haddock/haddock_restraints/haddock3_accessibility.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_haddock/haddock_restraints 2025-09-18T13:50:30,641 copying build/lib/biobb_adapters/pycompss/biobb_haddock/haddock_restraints/haddock3_actpass_to_ambig.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_haddock/haddock_restraints 2025-09-18T13:50:30,643 copying build/lib/biobb_adapters/pycompss/biobb_haddock/haddock_restraints/haddock3_passive_from_active.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_haddock/haddock_restraints 2025-09-18T13:50:30,645 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_commons 2025-09-18T13:50:30,646 copying build/lib/biobb_adapters/pycompss/biobb_commons/task_config.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_commons 2025-09-18T13:50:30,648 copying build/lib/biobb_adapters/pycompss/biobb_commons/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_commons 2025-09-18T13:50:30,650 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry 2025-09-18T13:50:30,651 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-09-18T13:50:30,653 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-09-18T13:50:30,654 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-09-18T13:50:30,656 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-09-18T13:50:30,658 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-09-18T13:50:30,660 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/ambertools 2025-09-18T13:50:30,661 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry 2025-09-18T13:50:30,663 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:30,664 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:30,666 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:30,668 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:30,670 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:30,671 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:30,673 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:30,674 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:30,676 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_convert_amber_to_gmx.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:30,678 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:30,679 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/acpype 2025-09-18T13:50:30,682 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:30,683 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:30,685 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:30,687 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:30,688 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:30,690 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:30,692 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:30,693 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:30,695 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:30,697 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_chemistry/babelm 2025-09-18T13:50:30,699 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cp2k 2025-09-18T13:50:30,700 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cp2k/cp2k 2025-09-18T13:50:30,702 copying build/lib/biobb_adapters/pycompss/biobb_cp2k/cp2k/cp2k_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cp2k/cp2k 2025-09-18T13:50:30,703 copying build/lib/biobb_adapters/pycompss/biobb_cp2k/cp2k/cp2k_prep.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cp2k/cp2k 2025-09-18T13:50:30,705 copying build/lib/biobb_adapters/pycompss/biobb_cp2k/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cp2k 2025-09-18T13:50:30,707 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_gromacs 2025-09-18T13:50:30,708 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_gromacs/gromacs_extra 2025-09-18T13:50:30,709 copying build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs_extra/append_ligand.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_gromacs/gromacs_extra 2025-09-18T13:50:30,711 copying build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs_extra/ndx2resttop.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_gromacs/gromacs_extra 2025-09-18T13:50:30,714 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:30,715 copying build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs/gmxselect.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:30,717 copying build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs/solvate.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:30,718 copying build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs/genion.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:30,720 copying build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs/grompp.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:30,722 copying build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs/editconf.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:30,724 copying build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs/pdb2gmx.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:30,725 copying build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs/genrestr.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:30,727 copying build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs/trjcat.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:30,729 copying build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs/make_ndx.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:30,731 copying build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs/grompp_mdrun.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:30,733 copying build/lib/biobb_adapters/pycompss/biobb_gromacs/gromacs/mdrun.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_gromacs/gromacs 2025-09-18T13:50:30,735 copying build/lib/biobb_adapters/pycompss/biobb_gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_gromacs 2025-09-18T13:50:30,737 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml 2025-09-18T13:50:30,739 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2025-09-18T13:50:30,740 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/pairwise_comparison.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-09-18T13:50:30,742 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/dummy_variables.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-09-18T13:50:30,744 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/scale_columns.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-09-18T13:50:30,745 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-09-18T13:50:30,747 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/map_variables.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-09-18T13:50:30,749 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/dendrogram.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-09-18T13:50:30,751 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/correlation_matrix.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-09-18T13:50:30,752 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/drop_columns.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/utils 2025-09-18T13:50:30,755 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2025-09-18T13:50:30,756 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/regression_predict.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/regression 2025-09-18T13:50:30,758 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/polynomial_regression.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/regression 2025-09-18T13:50:30,760 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/regression 2025-09-18T13:50:30,761 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/linear_regression.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/regression 2025-09-18T13:50:30,763 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/random_forest_regressor.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/regression 2025-09-18T13:50:30,766 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2025-09-18T13:50:30,767 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/decision_tree.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-09-18T13:50:30,769 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/k_neighbors_coefficient.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-09-18T13:50:30,771 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/k_neighbors.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-09-18T13:50:30,773 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/support_vector_machine.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-09-18T13:50:30,775 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/logistic_regression.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-09-18T13:50:30,777 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-09-18T13:50:30,778 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/random_forest_classifier.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-09-18T13:50:30,780 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/classification_predict.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/classification 2025-09-18T13:50:30,783 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:30,784 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/k_means.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:30,785 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/spectral_coefficient.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:30,787 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_coefficient.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:30,789 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/dbscan.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:30,791 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/clustering_predict.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:30,792 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/k_means_coefficient.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:30,794 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:30,796 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_clustering.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:30,798 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/spectral_clustering.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/clustering 2025-09-18T13:50:30,800 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-09-18T13:50:30,801 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/principal_component.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-09-18T13:50:30,803 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_components.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-09-18T13:50:30,805 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-09-18T13:50:30,806 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_regression.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2025-09-18T13:50:30,808 copying build/lib/biobb_adapters/pycompss/biobb_ml/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml 2025-09-18T13:50:30,810 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2025-09-18T13:50:30,811 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/classification_neural_network.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-09-18T13:50:30,813 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/recurrent_neural_network.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-09-18T13:50:30,815 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-09-18T13:50:30,816 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/autoencoder_neural_network.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-09-18T13:50:30,818 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_decode.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-09-18T13:50:30,820 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_predict.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-09-18T13:50:30,822 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/regression_neural_network.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/neural_networks 2025-09-18T13:50:30,825 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/resampling 2025-09-18T13:50:30,826 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/oversampling.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/resampling 2025-09-18T13:50:30,828 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/resampling.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/resampling 2025-09-18T13:50:30,830 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/resampling 2025-09-18T13:50:30,831 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/undersampling.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_ml/resampling 2025-09-18T13:50:30,834 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip 2025-09-18T13:50:30,835 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:30,837 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip_prepare_structure.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:30,839 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip_prepare_pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:30,841 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:30,843 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/titration.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:30,845 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/ignore_residues.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:30,848 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip_ignore_residues.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:30,849 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:30,851 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/prepare_pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:30,853 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:30,855 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/prepare_structure.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:30,857 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip_titration.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip/cmip 2025-09-18T13:50:30,859 copying build/lib/biobb_adapters/pycompss/biobb_cmip/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_cmip 2025-09-18T13:50:30,862 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis 2025-09-18T13:50:30,864 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:30,865 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:30,867 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:30,869 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:30,871 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:30,873 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:30,875 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:30,877 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:30,879 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:30,881 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:30,883 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:30,885 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:30,887 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:30,889 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:30,891 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:30,893 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:30,895 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:30,897 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/gromacs 2025-09-18T13:50:30,900 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,902 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,904 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,906 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,909 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,911 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,913 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,915 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,917 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,919 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,921 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,923 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,925 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,927 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,929 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,931 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,933 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,935 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,937 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,939 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,941 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,943 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,945 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,948 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,950 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,952 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis/ambertools 2025-09-18T13:50:30,954 copying build/lib/biobb_adapters/pycompss/biobb_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_analysis 2025-09-18T13:50:30,957 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model 2025-09-18T13:50:30,958 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:30,960 copying build/lib/biobb_adapters/pycompss/biobb_model/model/checking_log.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:30,962 copying build/lib/biobb_adapters/pycompss/biobb_model/model/mutate_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:30,965 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_ssbonds.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:30,967 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_chirality.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:30,969 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_side_chain.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:30,971 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_amides.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:30,973 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:30,975 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_altlocs.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:30,977 copying build/lib/biobb_adapters/pycompss/biobb_model/model/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:30,979 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_side_chain_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:30,981 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_backbone.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:30,983 copying build/lib/biobb_adapters/pycompss/biobb_model/model/mutate.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model/model 2025-09-18T13:50:30,985 copying build/lib/biobb_adapters/pycompss/biobb_model/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_model 2025-09-18T13:50:30,987 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pytorch 2025-09-18T13:50:30,989 copying build/lib/biobb_adapters/pycompss/biobb_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pytorch 2025-09-18T13:50:30,991 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pytorch/mdae 2025-09-18T13:50:30,992 copying build/lib/biobb_adapters/pycompss/biobb_pytorch/mdae/train_mdae.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pytorch/mdae 2025-09-18T13:50:30,995 copying build/lib/biobb_adapters/pycompss/biobb_pytorch/mdae/apply_mdae.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pytorch/mdae 2025-09-18T13:50:30,997 copying build/lib/biobb_adapters/pycompss/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss 2025-09-18T13:50:30,999 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_dna 2025-09-18T13:50:31,001 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_dna/stiffness 2025-09-18T13:50:31,003 copying build/lib/biobb_adapters/pycompss/biobb_dna/stiffness/basepair_stiffness.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/stiffness 2025-09-18T13:50:31,005 copying build/lib/biobb_adapters/pycompss/biobb_dna/stiffness/average_stiffness.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/stiffness 2025-09-18T13:50:31,008 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_dna/dna 2025-09-18T13:50:31,010 copying build/lib/biobb_adapters/pycompss/biobb_dna/dna/dna_bimodality.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/dna 2025-09-18T13:50:31,012 copying build/lib/biobb_adapters/pycompss/biobb_dna/dna/dna_timeseries_unzip.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/dna 2025-09-18T13:50:31,014 copying build/lib/biobb_adapters/pycompss/biobb_dna/dna/dna_averages.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/dna 2025-09-18T13:50:31,016 copying build/lib/biobb_adapters/pycompss/biobb_dna/dna/dna_timeseries.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/dna 2025-09-18T13:50:31,019 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_dna/intrabp_correlations 2025-09-18T13:50:31,020 copying build/lib/biobb_adapters/pycompss/biobb_dna/intrabp_correlations/intrahpcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/intrabp_correlations 2025-09-18T13:50:31,022 copying build/lib/biobb_adapters/pycompss/biobb_dna/intrabp_correlations/intraseqcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/intrabp_correlations 2025-09-18T13:50:31,024 copying build/lib/biobb_adapters/pycompss/biobb_dna/intrabp_correlations/intrabpcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/intrabp_correlations 2025-09-18T13:50:31,027 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_dna/curvesplus 2025-09-18T13:50:31,028 copying build/lib/biobb_adapters/pycompss/biobb_dna/curvesplus/biobb_curves.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/curvesplus 2025-09-18T13:50:31,030 copying build/lib/biobb_adapters/pycompss/biobb_dna/curvesplus/biobb_canal.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/curvesplus 2025-09-18T13:50:31,033 copying build/lib/biobb_adapters/pycompss/biobb_dna/curvesplus/biobb_canion.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/curvesplus 2025-09-18T13:50:31,035 copying build/lib/biobb_adapters/pycompss/biobb_dna/curvesplus/canal_unzip.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/curvesplus 2025-09-18T13:50:31,037 copying build/lib/biobb_adapters/pycompss/biobb_dna/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna 2025-09-18T13:50:31,039 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_dna/interbp_correlations 2025-09-18T13:50:31,041 copying build/lib/biobb_adapters/pycompss/biobb_dna/interbp_correlations/interhpcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/interbp_correlations 2025-09-18T13:50:31,043 copying build/lib/biobb_adapters/pycompss/biobb_dna/interbp_correlations/interseqcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/interbp_correlations 2025-09-18T13:50:31,045 copying build/lib/biobb_adapters/pycompss/biobb_dna/interbp_correlations/interbpcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/interbp_correlations 2025-09-18T13:50:31,048 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_dna/backbone 2025-09-18T13:50:31,049 copying build/lib/biobb_adapters/pycompss/biobb_dna/backbone/puckering.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/backbone 2025-09-18T13:50:31,052 copying build/lib/biobb_adapters/pycompss/biobb_dna/backbone/canonicalag.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/backbone 2025-09-18T13:50:31,054 copying build/lib/biobb_adapters/pycompss/biobb_dna/backbone/bipopulations.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_dna/backbone 2025-09-18T13:50:31,057 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io 2025-09-18T13:50:31,058 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,060 copying build/lib/biobb_adapters/pycompss/biobb_io/api/mmcif.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,062 copying build/lib/biobb_adapters/pycompss/biobb_io/api/binding_site.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,064 copying build/lib/biobb_adapters/pycompss/biobb_io/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,066 copying build/lib/biobb_adapters/pycompss/biobb_io/api/ligand.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,069 copying build/lib/biobb_adapters/pycompss/biobb_io/api/mddb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,071 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,073 copying build/lib/biobb_adapters/pycompss/biobb_io/api/ligand_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,075 copying build/lib/biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_search.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,077 copying build/lib/biobb_adapters/pycompss/biobb_io/api/memprotmd_sim.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,079 copying build/lib/biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_list.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,081 copying build/lib/biobb_adapters/pycompss/biobb_io/api/api_binding_site.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,083 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_variants_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,085 copying build/lib/biobb_adapters/pycompss/biobb_io/api/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,087 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,089 copying build/lib/biobb_adapters/pycompss/biobb_io/api/ideal_sdf.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,091 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,093 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,095 copying build/lib/biobb_adapters/pycompss/biobb_io/api/canonical_fasta.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,097 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_variants.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,100 copying build/lib/biobb_adapters/pycompss/biobb_io/api/structure_info.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,102 copying build/lib/biobb_adapters/pycompss/biobb_io/api/drugbank.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io/api 2025-09-18T13:50:31,104 copying build/lib/biobb_adapters/pycompss/biobb_io/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_io 2025-09-18T13:50:31,107 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx 2025-09-18T13:50:31,108 copying build/lib/biobb_adapters/pycompss/biobb_pmx/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx 2025-09-18T13:50:31,111 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmxbiobb 2025-09-18T13:50:31,113 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxmutate.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmxbiobb 2025-09-18T13:50:31,115 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxmerge_ff.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmxbiobb 2025-09-18T13:50:31,117 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxcreate_top.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmxbiobb 2025-09-18T13:50:31,120 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxgentop.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmxbiobb 2025-09-18T13:50:31,122 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxligand_hybrid.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmxbiobb 2025-09-18T13:50:31,124 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxanalyse.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmxbiobb 2025-09-18T13:50:31,126 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxatom_mapping.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_pmx/pmxbiobb 2025-09-18T13:50:31,129 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_godmd 2025-09-18T13:50:31,130 copying build/lib/biobb_adapters/pycompss/biobb_godmd/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_godmd 2025-09-18T13:50:31,133 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_godmd/godmd 2025-09-18T13:50:31,134 copying build/lib/biobb_adapters/pycompss/biobb_godmd/godmd/godmd_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_godmd/godmd 2025-09-18T13:50:31,137 copying build/lib/biobb_adapters/pycompss/biobb_godmd/godmd/godmd_prep.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_godmd/godmd 2025-09-18T13:50:31,139 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_bioml 2025-09-18T13:50:31,141 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_bioml/bioml 2025-09-18T13:50:31,143 copying build/lib/biobb_adapters/pycompss/biobb_bioml/bioml/generate_pssm.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_bioml/bioml 2025-09-18T13:50:31,145 copying build/lib/biobb_adapters/pycompss/biobb_bioml/bioml/ensemble.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_bioml/bioml 2025-09-18T13:50:31,147 copying build/lib/biobb_adapters/pycompss/biobb_bioml/bioml/predict.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_bioml/bioml 2025-09-18T13:50:31,150 copying build/lib/biobb_adapters/pycompss/biobb_bioml/bioml/feature_extraction.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_bioml/bioml 2025-09-18T13:50:31,152 copying build/lib/biobb_adapters/pycompss/biobb_bioml/bioml/feature_selection.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_bioml/bioml 2025-09-18T13:50:31,154 copying build/lib/biobb_adapters/pycompss/biobb_bioml/bioml/generate_model.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_bioml/bioml 2025-09-18T13:50:31,156 copying build/lib/biobb_adapters/pycompss/biobb_bioml/bioml/model_training.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_bioml/bioml 2025-09-18T13:50:31,158 copying build/lib/biobb_adapters/pycompss/biobb_bioml/bioml/outlier.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_bioml/bioml 2025-09-18T13:50:31,161 copying build/lib/biobb_adapters/pycompss/biobb_bioml/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_bioml 2025-09-18T13:50:31,163 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_flexserv 2025-09-18T13:50:31,165 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_flexserv/flexserv 2025-09-18T13:50:31,166 copying build/lib/biobb_adapters/pycompss/biobb_flexserv/flexserv/nma_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexserv/flexserv 2025-09-18T13:50:31,169 copying build/lib/biobb_adapters/pycompss/biobb_flexserv/flexserv/bd_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexserv/flexserv 2025-09-18T13:50:31,171 copying build/lib/biobb_adapters/pycompss/biobb_flexserv/flexserv/dmd_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexserv/flexserv 2025-09-18T13:50:31,174 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:31,175 copying build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_bfactor.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:31,177 copying build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_info.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:31,179 copying build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_hinges.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:31,181 copying build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_stiffness.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:31,184 copying build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_evecs.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:31,186 copying build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_zip.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:31,188 copying build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_similarity.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:31,190 copying build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_unzip.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:31,192 copying build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_collectivity.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:31,194 copying build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_animate.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:31,196 copying build/lib/biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_lindemann.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexserv/pcasuite 2025-09-18T13:50:31,198 copying build/lib/biobb_adapters/pycompss/biobb_flexserv/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_flexserv 2025-09-18T13:50:31,200 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_asitedesign 2025-09-18T13:50:31,202 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_asitedesign/asitedesign 2025-09-18T13:50:31,204 copying build/lib/biobb_adapters/pycompss/biobb_asitedesign/asitedesign/asitedesign.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_asitedesign/asitedesign 2025-09-18T13:50:31,206 copying build/lib/biobb_adapters/pycompss/biobb_asitedesign/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_asitedesign 2025-09-18T13:50:31,209 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber 2025-09-18T13:50:31,210 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-09-18T13:50:31,212 copying build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-09-18T13:50:31,214 copying build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-09-18T13:50:31,216 copying build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/pdb4amber 2025-09-18T13:50:31,218 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pmemd 2025-09-18T13:50:31,219 copying build/lib/biobb_adapters/pycompss/biobb_amber/pmemd/pmemd_mdrun.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/pmemd 2025-09-18T13:50:31,222 copying build/lib/biobb_adapters/pycompss/biobb_amber/pmemd/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/pmemd 2025-09-18T13:50:31,223 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/process 2025-09-18T13:50:31,225 copying build/lib/biobb_adapters/pycompss/biobb_amber/process/process_mdout.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/process 2025-09-18T13:50:31,227 copying build/lib/biobb_adapters/pycompss/biobb_amber/process/process_minout.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/process 2025-09-18T13:50:31,228 copying build/lib/biobb_adapters/pycompss/biobb_amber/process/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/process 2025-09-18T13:50:31,230 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2025-09-18T13:50:31,231 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_gen_top.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/leap 2025-09-18T13:50:31,233 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_build_linear_structure.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/leap 2025-09-18T13:50:31,235 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_solvate.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/leap 2025-09-18T13:50:31,237 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/leap 2025-09-18T13:50:31,238 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_add_ions.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/leap 2025-09-18T13:50:31,241 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cpptraj 2025-09-18T13:50:31,242 copying build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj/cpptraj_randomize_ions.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/cpptraj 2025-09-18T13:50:31,244 copying build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/cpptraj 2025-09-18T13:50:31,246 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cphstats 2025-09-18T13:50:31,247 copying build/lib/biobb_adapters/pycompss/biobb_amber/cphstats/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/cphstats 2025-09-18T13:50:31,249 copying build/lib/biobb_adapters/pycompss/biobb_amber/cphstats/cestats_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/cphstats 2025-09-18T13:50:31,251 copying build/lib/biobb_adapters/pycompss/biobb_amber/cphstats/cphstats_run.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/cphstats 2025-09-18T13:50:31,253 copying build/lib/biobb_adapters/pycompss/biobb_amber/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber 2025-09-18T13:50:31,255 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/ambpdb 2025-09-18T13:50:31,256 copying build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/ambpdb 2025-09-18T13:50:31,258 copying build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb/amber_to_pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/ambpdb 2025-09-18T13:50:31,260 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/parmed 2025-09-18T13:50:31,261 copying build/lib/biobb_adapters/pycompss/biobb_amber/parmed/parmed_cpinutil.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/parmed 2025-09-18T13:50:31,263 copying build/lib/biobb_adapters/pycompss/biobb_amber/parmed/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/parmed 2025-09-18T13:50:31,265 copying build/lib/biobb_adapters/pycompss/biobb_amber/parmed/parmed_hmassrepartition.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/parmed 2025-09-18T13:50:31,267 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/sander 2025-09-18T13:50:31,268 copying build/lib/biobb_adapters/pycompss/biobb_amber/sander/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/sander 2025-09-18T13:50:31,270 copying build/lib/biobb_adapters/pycompss/biobb_amber/sander/sander_mdrun.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/sander 2025-09-18T13:50:31,272 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/nab 2025-09-18T13:50:31,273 copying build/lib/biobb_adapters/pycompss/biobb_amber/nab/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/nab 2025-09-18T13:50:31,275 copying build/lib/biobb_adapters/pycompss/biobb_amber/nab/nab_build_dna_structure.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_amber/nab 2025-09-18T13:50:31,278 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils 2025-09-18T13:50:31,280 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,281 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,283 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/structure_check.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,285 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,286 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,288 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_molecules.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,290 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,292 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,294 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structure.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,296 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,297 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,299 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,301 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,303 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,305 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,306 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/closest_residues.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,308 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,310 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,311 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_residues.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,313 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_molecule.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,315 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,317 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,319 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,320 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,322 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structures_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,324 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,326 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/str_check_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,328 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb_pc.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils/utils 2025-09-18T13:50:31,330 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_structure_utils 2025-09-18T13:50:31,332 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_common 2025-09-18T13:50:31,333 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_common/generic 2025-09-18T13:50:31,335 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_common/generic/__pycache__ 2025-09-18T13:50:31,336 copying build/lib/biobb_adapters/pycompss/biobb_common/generic/__pycache__/folder_test.cpython-310.pyc -> build/bdist.linux-armv7l/wheel/./biobb_adapters/pycompss/biobb_common/generic/__pycache__ 2025-09-18T13:50:31,338 running install_egg_info 2025-09-18T13:50:31,373 Copying biobb_adapters.egg-info to build/bdist.linux-armv7l/wheel/./biobb_adapters-5.1.2-py3.11.egg-info 2025-09-18T13:50:31,387 running install_scripts 2025-09-18T13:50:31,400 creating build/bdist.linux-armv7l/wheel/biobb_adapters-5.1.2.dist-info/WHEEL 2025-09-18T13:50:31,403 creating '/tmp/pip-wheel-4vhcm5u8/biobb_adapters-5.1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-18T13:50:31,405 adding 'biobb_adapters/__init__.py' 2025-09-18T13:50:31,406 adding 'biobb_adapters/py.typed' 2025-09-18T13:50:31,408 adding 'biobb_adapters/cwl/biobb_amber/amber_to_pdb.cwl' 2025-09-18T13:50:31,410 adding 'biobb_adapters/cwl/biobb_amber/cestats_run.cwl' 2025-09-18T13:50:31,411 adding 'biobb_adapters/cwl/biobb_amber/cphstats_run.cwl' 2025-09-18T13:50:31,413 adding 'biobb_adapters/cwl/biobb_amber/cpptraj_randomize_ions.cwl' 2025-09-18T13:50:31,414 adding 'biobb_adapters/cwl/biobb_amber/leap_add_ions.cwl' 2025-09-18T13:50:31,415 adding 'biobb_adapters/cwl/biobb_amber/leap_build_linear_structure.cwl' 2025-09-18T13:50:31,417 adding 'biobb_adapters/cwl/biobb_amber/leap_gen_top.cwl' 2025-09-18T13:50:31,418 adding 'biobb_adapters/cwl/biobb_amber/leap_solvate.cwl' 2025-09-18T13:50:31,420 adding 'biobb_adapters/cwl/biobb_amber/nab_build_dna_structure.cwl' 2025-09-18T13:50:31,421 adding 'biobb_adapters/cwl/biobb_amber/parmed_cpinutil.cwl' 2025-09-18T13:50:31,422 adding 'biobb_adapters/cwl/biobb_amber/parmed_hmassrepartition.cwl' 2025-09-18T13:50:31,423 adding 'biobb_adapters/cwl/biobb_amber/pdb4amber_run.cwl' 2025-09-18T13:50:31,425 adding 'biobb_adapters/cwl/biobb_amber/pmemd_mdrun.cwl' 2025-09-18T13:50:31,426 adding 'biobb_adapters/cwl/biobb_amber/process_mdout.cwl' 2025-09-18T13:50:31,428 adding 'biobb_adapters/cwl/biobb_amber/process_minout.cwl' 2025-09-18T13:50:31,429 adding 'biobb_adapters/cwl/biobb_amber/sander_mdrun.cwl' 2025-09-18T13:50:31,431 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_average.cwl' 2025-09-18T13:50:31,433 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_bfactor.cwl' 2025-09-18T13:50:31,434 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_convert.cwl' 2025-09-18T13:50:31,435 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_dry.cwl' 2025-09-18T13:50:31,437 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_image.cwl' 2025-09-18T13:50:31,438 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_mask.cwl' 2025-09-18T13:50:31,440 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_rgyr.cwl' 2025-09-18T13:50:31,441 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_rms.cwl' 2025-09-18T13:50:31,443 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_rmsf.cwl' 2025-09-18T13:50:31,444 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_slice.cwl' 2025-09-18T13:50:31,445 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_snapshot.cwl' 2025-09-18T13:50:31,447 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_strip.cwl' 2025-09-18T13:50:31,448 adding 'biobb_adapters/cwl/biobb_analysis/gmx_cluster.cwl' 2025-09-18T13:50:31,449 adding 'biobb_adapters/cwl/biobb_analysis/gmx_energy.cwl' 2025-09-18T13:50:31,451 adding 'biobb_adapters/cwl/biobb_analysis/gmx_image.cwl' 2025-09-18T13:50:31,452 adding 'biobb_adapters/cwl/biobb_analysis/gmx_rgyr.cwl' 2025-09-18T13:50:31,454 adding 'biobb_adapters/cwl/biobb_analysis/gmx_rms.cwl' 2025-09-18T13:50:31,455 adding 'biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str.cwl' 2025-09-18T13:50:31,456 adding 'biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str_ens.cwl' 2025-09-18T13:50:31,458 adding 'biobb_adapters/cwl/biobb_analysis/gmx_trjconv_trj.cwl' 2025-09-18T13:50:31,460 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_convert_amber_to_gmx.cwl' 2025-09-18T13:50:31,461 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_ac.cwl' 2025-09-18T13:50:31,462 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_cns.cwl' 2025-09-18T13:50:31,464 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx.cwl' 2025-09-18T13:50:31,465 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx_opls.cwl' 2025-09-18T13:50:31,467 adding 'biobb_adapters/cwl/biobb_chemistry/babel_add_hydrogens.cwl' 2025-09-18T13:50:31,468 adding 'biobb_adapters/cwl/biobb_chemistry/babel_convert.cwl' 2025-09-18T13:50:31,469 adding 'biobb_adapters/cwl/biobb_chemistry/babel_minimize.cwl' 2025-09-18T13:50:31,470 adding 'biobb_adapters/cwl/biobb_chemistry/babel_remove_hydrogens.cwl' 2025-09-18T13:50:31,472 adding 'biobb_adapters/cwl/biobb_chemistry/reduce_add_hydrogens.cwl' 2025-09-18T13:50:31,473 adding 'biobb_adapters/cwl/biobb_chemistry/reduce_remove_hydrogens.cwl' 2025-09-18T13:50:31,476 adding 'biobb_adapters/cwl/biobb_cmip/cmip.cwl' 2025-09-18T13:50:31,477 adding 'biobb_adapters/cwl/biobb_cmip/cmip_ignore_residues.cwl' 2025-09-18T13:50:31,478 adding 'biobb_adapters/cwl/biobb_cmip/cmip_prepare_pdb.cwl' 2025-09-18T13:50:31,480 adding 'biobb_adapters/cwl/biobb_cmip/cmip_prepare_structure.cwl' 2025-09-18T13:50:31,481 adding 'biobb_adapters/cwl/biobb_cmip/cmip_run.cwl' 2025-09-18T13:50:31,482 adding 'biobb_adapters/cwl/biobb_cmip/cmip_titration.cwl' 2025-09-18T13:50:31,484 adding 'biobb_adapters/cwl/biobb_cmip/ignore_residues.cwl' 2025-09-18T13:50:31,485 adding 'biobb_adapters/cwl/biobb_cmip/prepare_pdb.cwl' 2025-09-18T13:50:31,486 adding 'biobb_adapters/cwl/biobb_cmip/prepare_structure.cwl' 2025-09-18T13:50:31,487 adding 'biobb_adapters/cwl/biobb_cmip/titration.cwl' 2025-09-18T13:50:31,489 adding 'biobb_adapters/cwl/biobb_cp2k/cp2k_prep.cwl' 2025-09-18T13:50:31,490 adding 'biobb_adapters/cwl/biobb_cp2k/cp2k_run.cwl' 2025-09-18T13:50:31,492 adding 'biobb_adapters/cwl/biobb_dna/average_stiffness.cwl' 2025-09-18T13:50:31,494 adding 'biobb_adapters/cwl/biobb_dna/basepair_stiffness.cwl' 2025-09-18T13:50:31,495 adding 'biobb_adapters/cwl/biobb_dna/biobb_canal.cwl' 2025-09-18T13:50:31,496 adding 'biobb_adapters/cwl/biobb_dna/biobb_canion.cwl' 2025-09-18T13:50:31,498 adding 'biobb_adapters/cwl/biobb_dna/biobb_curves.cwl' 2025-09-18T13:50:31,499 adding 'biobb_adapters/cwl/biobb_dna/bipopulations.cwl' 2025-09-18T13:50:31,500 adding 'biobb_adapters/cwl/biobb_dna/canal_unzip.cwl' 2025-09-18T13:50:31,502 adding 'biobb_adapters/cwl/biobb_dna/canonicalag.cwl' 2025-09-18T13:50:31,503 adding 'biobb_adapters/cwl/biobb_dna/dna_averages.cwl' 2025-09-18T13:50:31,505 adding 'biobb_adapters/cwl/biobb_dna/dna_bimodality.cwl' 2025-09-18T13:50:31,506 adding 'biobb_adapters/cwl/biobb_dna/dna_timeseries.cwl' 2025-09-18T13:50:31,508 adding 'biobb_adapters/cwl/biobb_dna/dna_timeseries_unzip.cwl' 2025-09-18T13:50:31,509 adding 'biobb_adapters/cwl/biobb_dna/interbpcorr.cwl' 2025-09-18T13:50:31,511 adding 'biobb_adapters/cwl/biobb_dna/interhpcorr.cwl' 2025-09-18T13:50:31,512 adding 'biobb_adapters/cwl/biobb_dna/interseqcorr.cwl' 2025-09-18T13:50:31,513 adding 'biobb_adapters/cwl/biobb_dna/intrabpcorr.cwl' 2025-09-18T13:50:31,515 adding 'biobb_adapters/cwl/biobb_dna/intrahpcorr.cwl' 2025-09-18T13:50:31,516 adding 'biobb_adapters/cwl/biobb_dna/intraseqcorr.cwl' 2025-09-18T13:50:31,518 adding 'biobb_adapters/cwl/biobb_dna/puckering.cwl' 2025-09-18T13:50:31,520 adding 'biobb_adapters/cwl/biobb_flexdyn/concoord_disco.cwl' 2025-09-18T13:50:31,521 adding 'biobb_adapters/cwl/biobb_flexdyn/concoord_dist.cwl' 2025-09-18T13:50:31,522 adding 'biobb_adapters/cwl/biobb_flexdyn/imod_imc.cwl' 2025-09-18T13:50:31,524 adding 'biobb_adapters/cwl/biobb_flexdyn/imod_imode.cwl' 2025-09-18T13:50:31,525 adding 'biobb_adapters/cwl/biobb_flexdyn/imod_imove.cwl' 2025-09-18T13:50:31,527 adding 'biobb_adapters/cwl/biobb_flexdyn/nolb_nma.cwl' 2025-09-18T13:50:31,528 adding 'biobb_adapters/cwl/biobb_flexdyn/prody_anm.cwl' 2025-09-18T13:50:31,530 adding 'biobb_adapters/cwl/biobb_flexserv/bd_run.cwl' 2025-09-18T13:50:31,531 adding 'biobb_adapters/cwl/biobb_flexserv/dmd_run.cwl' 2025-09-18T13:50:31,533 adding 'biobb_adapters/cwl/biobb_flexserv/nma_run.cwl' 2025-09-18T13:50:31,534 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_animate.cwl' 2025-09-18T13:50:31,535 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_bfactor.cwl' 2025-09-18T13:50:31,537 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_collectivity.cwl' 2025-09-18T13:50:31,538 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_evecs.cwl' 2025-09-18T13:50:31,539 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_hinges.cwl' 2025-09-18T13:50:31,540 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_info.cwl' 2025-09-18T13:50:31,541 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_lindemann.cwl' 2025-09-18T13:50:31,543 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_similarity.cwl' 2025-09-18T13:50:31,544 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_stiffness.cwl' 2025-09-18T13:50:31,545 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_unzip.cwl' 2025-09-18T13:50:31,546 adding 'biobb_adapters/cwl/biobb_flexserv/pcz_zip.cwl' 2025-09-18T13:50:31,548 adding 'biobb_adapters/cwl/biobb_godmd/godmd_prep.cwl' 2025-09-18T13:50:31,549 adding 'biobb_adapters/cwl/biobb_godmd/godmd_run.cwl' 2025-09-18T13:50:31,551 adding 'biobb_adapters/cwl/biobb_gromacs/append_ligand.cwl' 2025-09-18T13:50:31,553 adding 'biobb_adapters/cwl/biobb_gromacs/editconf.cwl' 2025-09-18T13:50:31,554 adding 'biobb_adapters/cwl/biobb_gromacs/genion.cwl' 2025-09-18T13:50:31,555 adding 'biobb_adapters/cwl/biobb_gromacs/genrestr.cwl' 2025-09-18T13:50:31,557 adding 'biobb_adapters/cwl/biobb_gromacs/gmxselect.cwl' 2025-09-18T13:50:31,558 adding 'biobb_adapters/cwl/biobb_gromacs/grompp.cwl' 2025-09-18T13:50:31,559 adding 'biobb_adapters/cwl/biobb_gromacs/grompp_mdrun.cwl' 2025-09-18T13:50:31,561 adding 'biobb_adapters/cwl/biobb_gromacs/make_ndx.cwl' 2025-09-18T13:50:31,562 adding 'biobb_adapters/cwl/biobb_gromacs/mdrun.cwl' 2025-09-18T13:50:31,564 adding 'biobb_adapters/cwl/biobb_gromacs/ndx2resttop.cwl' 2025-09-18T13:50:31,565 adding 'biobb_adapters/cwl/biobb_gromacs/pdb2gmx.cwl' 2025-09-18T13:50:31,567 adding 'biobb_adapters/cwl/biobb_gromacs/solvate.cwl' 2025-09-18T13:50:31,568 adding 'biobb_adapters/cwl/biobb_gromacs/trjcat.cwl' 2025-09-18T13:50:31,570 adding 'biobb_adapters/cwl/biobb_haddock/capri_eval.cwl' 2025-09-18T13:50:31,571 adding 'biobb_adapters/cwl/biobb_haddock/clust_fcc.cwl' 2025-09-18T13:50:31,573 adding 'biobb_adapters/cwl/biobb_haddock/contact_map.cwl' 2025-09-18T13:50:31,574 adding 'biobb_adapters/cwl/biobb_haddock/em_ref.cwl' 2025-09-18T13:50:31,576 adding 'biobb_adapters/cwl/biobb_haddock/flex_ref.cwl' 2025-09-18T13:50:31,577 adding 'biobb_adapters/cwl/biobb_haddock/haddock3_accessibility.cwl' 2025-09-18T13:50:31,578 adding 'biobb_adapters/cwl/biobb_haddock/haddock3_actpass_to_ambig.cwl' 2025-09-18T13:50:31,580 adding 'biobb_adapters/cwl/biobb_haddock/haddock3_extend.cwl' 2025-09-18T13:50:31,581 adding 'biobb_adapters/cwl/biobb_haddock/haddock3_passive_from_active.cwl' 2025-09-18T13:50:31,582 adding 'biobb_adapters/cwl/biobb_haddock/haddock3_restrain_bodies.cwl' 2025-09-18T13:50:31,584 adding 'biobb_adapters/cwl/biobb_haddock/haddock3_run.cwl' 2025-09-18T13:50:31,585 adding 'biobb_adapters/cwl/biobb_haddock/rigid_body.cwl' 2025-09-18T13:50:31,586 adding 'biobb_adapters/cwl/biobb_haddock/sele_top.cwl' 2025-09-18T13:50:31,588 adding 'biobb_adapters/cwl/biobb_haddock/sele_top_clusts.cwl' 2025-09-18T13:50:31,589 adding 'biobb_adapters/cwl/biobb_haddock/topology.cwl' 2025-09-18T13:50:31,591 adding 'biobb_adapters/cwl/biobb_io/alphafold.cwl' 2025-09-18T13:50:31,592 adding 'biobb_adapters/cwl/biobb_io/api_binding_site.cwl' 2025-09-18T13:50:31,594 adding 'biobb_adapters/cwl/biobb_io/canonical_fasta.cwl' 2025-09-18T13:50:31,595 adding 'biobb_adapters/cwl/biobb_io/drugbank.cwl' 2025-09-18T13:50:31,596 adding 'biobb_adapters/cwl/biobb_io/ideal_sdf.cwl' 2025-09-18T13:50:31,598 adding 'biobb_adapters/cwl/biobb_io/ligand.cwl' 2025-09-18T13:50:31,599 adding 'biobb_adapters/cwl/biobb_io/mddb.cwl' 2025-09-18T13:50:31,600 adding 'biobb_adapters/cwl/biobb_io/memprotmd_sim.cwl' 2025-09-18T13:50:31,601 adding 'biobb_adapters/cwl/biobb_io/memprotmd_sim_list.cwl' 2025-09-18T13:50:31,603 adding 'biobb_adapters/cwl/biobb_io/memprotmd_sim_search.cwl' 2025-09-18T13:50:31,604 adding 'biobb_adapters/cwl/biobb_io/mmcif.cwl' 2025-09-18T13:50:31,605 adding 'biobb_adapters/cwl/biobb_io/pdb.cwl' 2025-09-18T13:50:31,606 adding 'biobb_adapters/cwl/biobb_io/pdb_cluster_zip.cwl' 2025-09-18T13:50:31,607 adding 'biobb_adapters/cwl/biobb_io/pdb_variants.cwl' 2025-09-18T13:50:31,609 adding 'biobb_adapters/cwl/biobb_io/structure_info.cwl' 2025-09-18T13:50:31,611 adding 'biobb_adapters/cwl/biobb_md/append_ligand.cwl' 2025-09-18T13:50:31,612 adding 'biobb_adapters/cwl/biobb_md/editconf.cwl' 2025-09-18T13:50:31,613 adding 'biobb_adapters/cwl/biobb_md/genion.cwl' 2025-09-18T13:50:31,614 adding 'biobb_adapters/cwl/biobb_md/genrestr.cwl' 2025-09-18T13:50:31,616 adding 'biobb_adapters/cwl/biobb_md/gmxselect.cwl' 2025-09-18T13:50:31,617 adding 'biobb_adapters/cwl/biobb_md/grompp.cwl' 2025-09-18T13:50:31,618 adding 'biobb_adapters/cwl/biobb_md/grompp_mdrun.cwl' 2025-09-18T13:50:31,620 adding 'biobb_adapters/cwl/biobb_md/make_ndx.cwl' 2025-09-18T13:50:31,621 adding 'biobb_adapters/cwl/biobb_md/mdrun.cwl' 2025-09-18T13:50:31,622 adding 'biobb_adapters/cwl/biobb_md/ndx2resttop.cwl' 2025-09-18T13:50:31,624 adding 'biobb_adapters/cwl/biobb_md/pdb2gmx.cwl' 2025-09-18T13:50:31,625 adding 'biobb_adapters/cwl/biobb_md/solvate.cwl' 2025-09-18T13:50:31,627 adding 'biobb_adapters/cwl/biobb_mem/cpptraj_density.cwl' 2025-09-18T13:50:31,628 adding 'biobb_adapters/cwl/biobb_mem/fatslim_apl.cwl' 2025-09-18T13:50:31,630 adding 'biobb_adapters/cwl/biobb_mem/fatslim_membranes.cwl' 2025-09-18T13:50:31,631 adding 'biobb_adapters/cwl/biobb_mem/gmx_order.cwl' 2025-09-18T13:50:31,632 adding 'biobb_adapters/cwl/biobb_mem/lpp_assign_leaflets.cwl' 2025-09-18T13:50:31,634 adding 'biobb_adapters/cwl/biobb_mem/lpp_flip_flop.cwl' 2025-09-18T13:50:31,635 adding 'biobb_adapters/cwl/biobb_mem/lpp_zpositions.cwl' 2025-09-18T13:50:31,636 adding 'biobb_adapters/cwl/biobb_mem/mda_hole.cwl' 2025-09-18T13:50:31,639 adding 'biobb_adapters/cwl/biobb_ml/agglomerative_clustering.cwl' 2025-09-18T13:50:31,640 adding 'biobb_adapters/cwl/biobb_ml/agglomerative_coefficient.cwl' 2025-09-18T13:50:31,642 adding 'biobb_adapters/cwl/biobb_ml/autoencoder_neural_network.cwl' 2025-09-18T13:50:31,643 adding 'biobb_adapters/cwl/biobb_ml/classification_neural_network.cwl' 2025-09-18T13:50:31,644 adding 'biobb_adapters/cwl/biobb_ml/classification_predict.cwl' 2025-09-18T13:50:31,646 adding 'biobb_adapters/cwl/biobb_ml/clustering_predict.cwl' 2025-09-18T13:50:31,647 adding 'biobb_adapters/cwl/biobb_ml/correlation_matrix.cwl' 2025-09-18T13:50:31,648 adding 'biobb_adapters/cwl/biobb_ml/dbscan.cwl' 2025-09-18T13:50:31,649 adding 'biobb_adapters/cwl/biobb_ml/decision_tree.cwl' 2025-09-18T13:50:31,651 adding 'biobb_adapters/cwl/biobb_ml/dendrogram.cwl' 2025-09-18T13:50:31,652 adding 'biobb_adapters/cwl/biobb_ml/drop_columns.cwl' 2025-09-18T13:50:31,653 adding 'biobb_adapters/cwl/biobb_ml/dummy_variables.cwl' 2025-09-18T13:50:31,655 adding 'biobb_adapters/cwl/biobb_ml/k_means.cwl' 2025-09-18T13:50:31,656 adding 'biobb_adapters/cwl/biobb_ml/k_means_coefficient.cwl' 2025-09-18T13:50:31,657 adding 'biobb_adapters/cwl/biobb_ml/k_neighbors.cwl' 2025-09-18T13:50:31,659 adding 'biobb_adapters/cwl/biobb_ml/k_neighbors_coefficient.cwl' 2025-09-18T13:50:31,660 adding 'biobb_adapters/cwl/biobb_ml/linear_regression.cwl' 2025-09-18T13:50:31,661 adding 'biobb_adapters/cwl/biobb_ml/logistic_regression.cwl' 2025-09-18T13:50:31,663 adding 'biobb_adapters/cwl/biobb_ml/map_variables.cwl' 2025-09-18T13:50:31,664 adding 'biobb_adapters/cwl/biobb_ml/neural_network_decode.cwl' 2025-09-18T13:50:31,665 adding 'biobb_adapters/cwl/biobb_ml/neural_network_predict.cwl' 2025-09-18T13:50:31,667 adding 'biobb_adapters/cwl/biobb_ml/oversampling.cwl' 2025-09-18T13:50:31,668 adding 'biobb_adapters/cwl/biobb_ml/pairwise_comparison.cwl' 2025-09-18T13:50:31,669 adding 'biobb_adapters/cwl/biobb_ml/pls_components.cwl' 2025-09-18T13:50:31,671 adding 'biobb_adapters/cwl/biobb_ml/pls_regression.cwl' 2025-09-18T13:50:31,672 adding 'biobb_adapters/cwl/biobb_ml/polynomial_regression.cwl' 2025-09-18T13:50:31,673 adding 'biobb_adapters/cwl/biobb_ml/principal_component.cwl' 2025-09-18T13:50:31,675 adding 'biobb_adapters/cwl/biobb_ml/random_forest_classifier.cwl' 2025-09-18T13:50:31,676 adding 'biobb_adapters/cwl/biobb_ml/random_forest_regressor.cwl' 2025-09-18T13:50:31,677 adding 'biobb_adapters/cwl/biobb_ml/recurrent_neural_network.cwl' 2025-09-18T13:50:31,678 adding 'biobb_adapters/cwl/biobb_ml/regression_neural_network.cwl' 2025-09-18T13:50:31,680 adding 'biobb_adapters/cwl/biobb_ml/regression_predict.cwl' 2025-09-18T13:50:31,681 adding 'biobb_adapters/cwl/biobb_ml/resampling.cwl' 2025-09-18T13:50:31,682 adding 'biobb_adapters/cwl/biobb_ml/scale_columns.cwl' 2025-09-18T13:50:31,683 adding 'biobb_adapters/cwl/biobb_ml/spectral_clustering.cwl' 2025-09-18T13:50:31,685 adding 'biobb_adapters/cwl/biobb_ml/spectral_coefficient.cwl' 2025-09-18T13:50:31,686 adding 'biobb_adapters/cwl/biobb_ml/support_vector_machine.cwl' 2025-09-18T13:50:31,687 adding 'biobb_adapters/cwl/biobb_ml/undersampling.cwl' 2025-09-18T13:50:31,689 adding 'biobb_adapters/cwl/biobb_model/checking_log.cwl' 2025-09-18T13:50:31,691 adding 'biobb_adapters/cwl/biobb_model/fix_altlocs.cwl' 2025-09-18T13:50:31,692 adding 'biobb_adapters/cwl/biobb_model/fix_amides.cwl' 2025-09-18T13:50:31,693 adding 'biobb_adapters/cwl/biobb_model/fix_backbone.cwl' 2025-09-18T13:50:31,694 adding 'biobb_adapters/cwl/biobb_model/fix_chirality.cwl' 2025-09-18T13:50:31,696 adding 'biobb_adapters/cwl/biobb_model/fix_pdb.cwl' 2025-09-18T13:50:31,697 adding 'biobb_adapters/cwl/biobb_model/fix_side_chain.cwl' 2025-09-18T13:50:31,698 adding 'biobb_adapters/cwl/biobb_model/fix_ssbonds.cwl' 2025-09-18T13:50:31,699 adding 'biobb_adapters/cwl/biobb_model/mutate.cwl' 2025-09-18T13:50:31,701 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_chain.cwl' 2025-09-18T13:50:31,702 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_chainxseg.cwl' 2025-09-18T13:50:31,704 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_delhetatm.cwl' 2025-09-18T13:50:31,705 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_fetch.cwl' 2025-09-18T13:50:31,706 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_fixinsert.cwl' 2025-09-18T13:50:31,707 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_keepcoord.cwl' 2025-09-18T13:50:31,709 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_merge.cwl' 2025-09-18T13:50:31,710 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_mkensemble.cwl' 2025-09-18T13:50:31,711 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_reres.cwl' 2025-09-18T13:50:31,713 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_seg.cwl' 2025-09-18T13:50:31,714 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selaltloc.cwl' 2025-09-18T13:50:31,715 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selchain.cwl' 2025-09-18T13:50:31,717 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_selres.cwl' 2025-09-18T13:50:31,718 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_splitmodel.cwl' 2025-09-18T13:50:31,719 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_splitseg.cwl' 2025-09-18T13:50:31,720 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_tidy.cwl' 2025-09-18T13:50:31,722 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_tofasta.cwl' 2025-09-18T13:50:31,723 adding 'biobb_adapters/cwl/biobb_pdb_tools/biobb_pdb_uniqname.cwl' 2025-09-18T13:50:31,725 adding 'biobb_adapters/cwl/biobb_pmx/pmxanalyse.cwl' 2025-09-18T13:50:31,727 adding 'biobb_adapters/cwl/biobb_pmx/pmxatom_mapping.cwl' 2025-09-18T13:50:31,728 adding 'biobb_adapters/cwl/biobb_pmx/pmxcreate_top.cwl' 2025-09-18T13:50:31,729 adding 'biobb_adapters/cwl/biobb_pmx/pmxgentop.cwl' 2025-09-18T13:50:31,731 adding 'biobb_adapters/cwl/biobb_pmx/pmxligand_hybrid.cwl' 2025-09-18T13:50:31,732 adding 'biobb_adapters/cwl/biobb_pmx/pmxmerge_ff.cwl' 2025-09-18T13:50:31,733 adding 'biobb_adapters/cwl/biobb_pmx/pmxmutate.cwl' 2025-09-18T13:50:31,735 adding 'biobb_adapters/cwl/biobb_pytorch/apply_mdae.cwl' 2025-09-18T13:50:31,736 adding 'biobb_adapters/cwl/biobb_pytorch/train_mdae.cwl' 2025-09-18T13:50:31,738 adding 'biobb_adapters/cwl/biobb_structure_utils/cat_pdb.cwl' 2025-09-18T13:50:31,739 adding 'biobb_adapters/cwl/biobb_structure_utils/closest_residues.cwl' 2025-09-18T13:50:31,741 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_atoms.cwl' 2025-09-18T13:50:31,742 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_chain.cwl' 2025-09-18T13:50:31,743 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_heteroatoms.cwl' 2025-09-18T13:50:31,744 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_model.cwl' 2025-09-18T13:50:31,745 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_molecule.cwl' 2025-09-18T13:50:31,747 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_residues.cwl' 2025-09-18T13:50:31,748 adding 'biobb_adapters/cwl/biobb_structure_utils/remove_ligand.cwl' 2025-09-18T13:50:31,749 adding 'biobb_adapters/cwl/biobb_structure_utils/remove_molecules.cwl' 2025-09-18T13:50:31,750 adding 'biobb_adapters/cwl/biobb_structure_utils/remove_pdb_water.cwl' 2025-09-18T13:50:31,752 adding 'biobb_adapters/cwl/biobb_structure_utils/renumber_structure.cwl' 2025-09-18T13:50:31,753 adding 'biobb_adapters/cwl/biobb_structure_utils/sort_gro_residues.cwl' 2025-09-18T13:50:31,754 adding 'biobb_adapters/cwl/biobb_structure_utils/str_check_add_hydrogens.cwl' 2025-09-18T13:50:31,755 adding 'biobb_adapters/cwl/biobb_structure_utils/structure_check.cwl' 2025-09-18T13:50:31,757 adding 'biobb_adapters/cwl/biobb_vs/autodock_vina_run.cwl' 2025-09-18T13:50:31,759 adding 'biobb_adapters/cwl/biobb_vs/bindingsite.cwl' 2025-09-18T13:50:31,760 adding 'biobb_adapters/cwl/biobb_vs/box.cwl' 2025-09-18T13:50:31,761 adding 'biobb_adapters/cwl/biobb_vs/box_residues.cwl' 2025-09-18T13:50:31,762 adding 'biobb_adapters/cwl/biobb_vs/extract_model_pdbqt.cwl' 2025-09-18T13:50:31,764 adding 'biobb_adapters/cwl/biobb_vs/fpocket.cwl' 2025-09-18T13:50:31,765 adding 'biobb_adapters/cwl/biobb_vs/fpocket_filter.cwl' 2025-09-18T13:50:31,766 adding 'biobb_adapters/cwl/biobb_vs/fpocket_run.cwl' 2025-09-18T13:50:31,768 adding 'biobb_adapters/cwl/biobb_vs/fpocket_select.cwl' 2025-09-18T13:50:31,770 adding 'biobb_adapters/pycompss/__init__.py' 2025-09-18T13:50:31,772 adding 'biobb_adapters/pycompss/biobb_amber/__init__.py' 2025-09-18T13:50:31,773 adding 'biobb_adapters/pycompss/biobb_amber/ambpdb/__init__.py' 2025-09-18T13:50:31,774 adding 'biobb_adapters/pycompss/biobb_amber/ambpdb/amber_to_pdb.py' 2025-09-18T13:50:31,776 adding 'biobb_adapters/pycompss/biobb_amber/cphstats/__init__.py' 2025-09-18T13:50:31,777 adding 'biobb_adapters/pycompss/biobb_amber/cphstats/cestats_run.py' 2025-09-18T13:50:31,778 adding 'biobb_adapters/pycompss/biobb_amber/cphstats/cphstats_run.py' 2025-09-18T13:50:31,780 adding 'biobb_adapters/pycompss/biobb_amber/cpptraj/__init__.py' 2025-09-18T13:50:31,781 adding 'biobb_adapters/pycompss/biobb_amber/cpptraj/cpptraj_randomize_ions.py' 2025-09-18T13:50:31,783 adding 'biobb_adapters/pycompss/biobb_amber/leap/__init__.py' 2025-09-18T13:50:31,784 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_add_ions.py' 2025-09-18T13:50:31,786 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_build_linear_structure.py' 2025-09-18T13:50:31,787 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_gen_top.py' 2025-09-18T13:50:31,788 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_solvate.py' 2025-09-18T13:50:31,790 adding 'biobb_adapters/pycompss/biobb_amber/nab/__init__.py' 2025-09-18T13:50:31,791 adding 'biobb_adapters/pycompss/biobb_amber/nab/nab_build_dna_structure.py' 2025-09-18T13:50:31,793 adding 'biobb_adapters/pycompss/biobb_amber/parmed/__init__.py' 2025-09-18T13:50:31,794 adding 'biobb_adapters/pycompss/biobb_amber/parmed/parmed_cpinutil.py' 2025-09-18T13:50:31,795 adding 'biobb_adapters/pycompss/biobb_amber/parmed/parmed_hmassrepartition.py' 2025-09-18T13:50:31,797 adding 'biobb_adapters/pycompss/biobb_amber/pdb4amber/__init__.py' 2025-09-18T13:50:31,798 adding 'biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber.py' 2025-09-18T13:50:31,799 adding 'biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber_run.py' 2025-09-18T13:50:31,801 adding 'biobb_adapters/pycompss/biobb_amber/pmemd/__init__.py' 2025-09-18T13:50:31,802 adding 'biobb_adapters/pycompss/biobb_amber/pmemd/pmemd_mdrun.py' 2025-09-18T13:50:31,804 adding 'biobb_adapters/pycompss/biobb_amber/process/__init__.py' 2025-09-18T13:50:31,805 adding 'biobb_adapters/pycompss/biobb_amber/process/process_mdout.py' 2025-09-18T13:50:31,806 adding 'biobb_adapters/pycompss/biobb_amber/process/process_minout.py' 2025-09-18T13:50:31,808 adding 'biobb_adapters/pycompss/biobb_amber/sander/__init__.py' 2025-09-18T13:50:31,809 adding 'biobb_adapters/pycompss/biobb_amber/sander/sander_mdrun.py' 2025-09-18T13:50:31,811 adding 'biobb_adapters/pycompss/biobb_analysis/__init__.py' 2025-09-18T13:50:31,813 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/__init__.py' 2025-09-18T13:50:31,814 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average.py' 2025-09-18T13:50:31,815 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average_pc.py' 2025-09-18T13:50:31,816 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor.py' 2025-09-18T13:50:31,818 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor_pc.py' 2025-09-18T13:50:31,819 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert.py' 2025-09-18T13:50:31,820 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert_pc.py' 2025-09-18T13:50:31,821 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry.py' 2025-09-18T13:50:31,822 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry_pc.py' 2025-09-18T13:50:31,824 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image.py' 2025-09-18T13:50:31,825 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image_pc.py' 2025-09-18T13:50:31,826 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask.py' 2025-09-18T13:50:31,827 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask_pc.py' 2025-09-18T13:50:31,829 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr.py' 2025-09-18T13:50:31,830 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr_pc.py' 2025-09-18T13:50:31,831 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms.py' 2025-09-18T13:50:31,832 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms_pc.py' 2025-09-18T13:50:31,834 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf.py' 2025-09-18T13:50:31,835 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf_pc.py' 2025-09-18T13:50:31,836 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice.py' 2025-09-18T13:50:31,837 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice_pc.py' 2025-09-18T13:50:31,838 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot.py' 2025-09-18T13:50:31,840 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot_pc.py' 2025-09-18T13:50:31,841 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip.py' 2025-09-18T13:50:31,842 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip_pc.py' 2025-09-18T13:50:31,844 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/__init__.py' 2025-09-18T13:50:31,845 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster.py' 2025-09-18T13:50:31,847 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster_pc.py' 2025-09-18T13:50:31,848 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy.py' 2025-09-18T13:50:31,850 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy_pc.py' 2025-09-18T13:50:31,851 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image.py' 2025-09-18T13:50:31,852 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image_pc.py' 2025-09-18T13:50:31,854 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr.py' 2025-09-18T13:50:31,855 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr_pc.py' 2025-09-18T13:50:31,856 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms.py' 2025-09-18T13:50:31,857 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms_pc.py' 2025-09-18T13:50:31,858 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str.py' 2025-09-18T13:50:31,860 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens.py' 2025-09-18T13:50:31,861 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens_pc.py' 2025-09-18T13:50:31,862 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_pc.py' 2025-09-18T13:50:31,863 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj.py' 2025-09-18T13:50:31,865 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj_pc.py' 2025-09-18T13:50:31,866 adding 'biobb_adapters/pycompss/biobb_asitedesign/__init__.py' 2025-09-18T13:50:31,868 adding 'biobb_adapters/pycompss/biobb_asitedesign/asitedesign/asitedesign.py' 2025-09-18T13:50:31,870 adding 'biobb_adapters/pycompss/biobb_bioml/__init__.py' 2025-09-18T13:50:31,871 adding 'biobb_adapters/pycompss/biobb_bioml/bioml/ensemble.py' 2025-09-18T13:50:31,873 adding 'biobb_adapters/pycompss/biobb_bioml/bioml/feature_extraction.py' 2025-09-18T13:50:31,874 adding 'biobb_adapters/pycompss/biobb_bioml/bioml/feature_selection.py' 2025-09-18T13:50:31,875 adding 'biobb_adapters/pycompss/biobb_bioml/bioml/generate_model.py' 2025-09-18T13:50:31,876 adding 'biobb_adapters/pycompss/biobb_bioml/bioml/generate_pssm.py' 2025-09-18T13:50:31,878 adding 'biobb_adapters/pycompss/biobb_bioml/bioml/model_training.py' 2025-09-18T13:50:31,879 adding 'biobb_adapters/pycompss/biobb_bioml/bioml/outlier.py' 2025-09-18T13:50:31,880 adding 'biobb_adapters/pycompss/biobb_bioml/bioml/predict.py' 2025-09-18T13:50:31,882 adding 'biobb_adapters/pycompss/biobb_chemistry/__init__.py' 2025-09-18T13:50:31,883 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/__init__.py' 2025-09-18T13:50:31,885 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_convert_amber_to_gmx.py' 2025-09-18T13:50:31,886 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac.py' 2025-09-18T13:50:31,887 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac_pc.py' 2025-09-18T13:50:31,888 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns.py' 2025-09-18T13:50:31,889 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns_pc.py' 2025-09-18T13:50:31,891 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx.py' 2025-09-18T13:50:31,892 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls.py' 2025-09-18T13:50:31,893 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls_pc.py' 2025-09-18T13:50:31,895 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_pc.py' 2025-09-18T13:50:31,896 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/__init__.py' 2025-09-18T13:50:31,897 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens.py' 2025-09-18T13:50:31,899 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens_pc.py' 2025-09-18T13:50:31,900 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens.py' 2025-09-18T13:50:31,901 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens_pc.py' 2025-09-18T13:50:31,903 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/__init__.py' 2025-09-18T13:50:31,904 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens.py' 2025-09-18T13:50:31,905 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens_pc.py' 2025-09-18T13:50:31,906 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert.py' 2025-09-18T13:50:31,908 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert_pc.py' 2025-09-18T13:50:31,909 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize.py' 2025-09-18T13:50:31,910 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize_pc.py' 2025-09-18T13:50:31,911 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens.py' 2025-09-18T13:50:31,912 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens_pc.py' 2025-09-18T13:50:31,914 adding 'biobb_adapters/pycompss/biobb_cmip/__init__.py' 2025-09-18T13:50:31,916 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/__init__.py' 2025-09-18T13:50:31,917 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip.py' 2025-09-18T13:50:31,918 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip_ignore_residues.py' 2025-09-18T13:50:31,919 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip_prepare_pdb.py' 2025-09-18T13:50:31,921 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip_prepare_structure.py' 2025-09-18T13:50:31,922 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip_run.py' 2025-09-18T13:50:31,924 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip_titration.py' 2025-09-18T13:50:31,925 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/ignore_residues.py' 2025-09-18T13:50:31,926 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/prepare_pdb.py' 2025-09-18T13:50:31,927 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/prepare_structure.py' 2025-09-18T13:50:31,929 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/titration.py' 2025-09-18T13:50:31,931 adding 'biobb_adapters/pycompss/biobb_common/generic/__pycache__/folder_test.cpython-310.pyc' 2025-09-18T13:50:31,933 adding 'biobb_adapters/pycompss/biobb_commons/__init__.py' 2025-09-18T13:50:31,934 adding 'biobb_adapters/pycompss/biobb_commons/task_config.py' 2025-09-18T13:50:31,936 adding 'biobb_adapters/pycompss/biobb_cp2k/__init__.py' 2025-09-18T13:50:31,938 adding 'biobb_adapters/pycompss/biobb_cp2k/cp2k/cp2k_prep.py' 2025-09-18T13:50:31,939 adding 'biobb_adapters/pycompss/biobb_cp2k/cp2k/cp2k_run.py' 2025-09-18T13:50:31,941 adding 'biobb_adapters/pycompss/biobb_dna/__init__.py' 2025-09-18T13:50:31,943 adding 'biobb_adapters/pycompss/biobb_dna/backbone/bipopulations.py' 2025-09-18T13:50:31,944 adding 'biobb_adapters/pycompss/biobb_dna/backbone/canonicalag.py' 2025-09-18T13:50:31,946 adding 'biobb_adapters/pycompss/biobb_dna/backbone/puckering.py' 2025-09-18T13:50:31,947 adding 'biobb_adapters/pycompss/biobb_dna/curvesplus/biobb_canal.py' 2025-09-18T13:50:31,949 adding 'biobb_adapters/pycompss/biobb_dna/curvesplus/biobb_canion.py' 2025-09-18T13:50:31,950 adding 'biobb_adapters/pycompss/biobb_dna/curvesplus/biobb_curves.py' 2025-09-18T13:50:31,951 adding 'biobb_adapters/pycompss/biobb_dna/curvesplus/canal_unzip.py' 2025-09-18T13:50:31,953 adding 'biobb_adapters/pycompss/biobb_dna/dna/dna_averages.py' 2025-09-18T13:50:31,954 adding 'biobb_adapters/pycompss/biobb_dna/dna/dna_bimodality.py' 2025-09-18T13:50:31,956 adding 'biobb_adapters/pycompss/biobb_dna/dna/dna_timeseries.py' 2025-09-18T13:50:31,957 adding 'biobb_adapters/pycompss/biobb_dna/dna/dna_timeseries_unzip.py' 2025-09-18T13:50:31,959 adding 'biobb_adapters/pycompss/biobb_dna/interbp_correlations/interbpcorr.py' 2025-09-18T13:50:31,960 adding 'biobb_adapters/pycompss/biobb_dna/interbp_correlations/interhpcorr.py' 2025-09-18T13:50:31,961 adding 'biobb_adapters/pycompss/biobb_dna/interbp_correlations/interseqcorr.py' 2025-09-18T13:50:31,963 adding 'biobb_adapters/pycompss/biobb_dna/intrabp_correlations/intrabpcorr.py' 2025-09-18T13:50:31,965 adding 'biobb_adapters/pycompss/biobb_dna/intrabp_correlations/intrahpcorr.py' 2025-09-18T13:50:31,966 adding 'biobb_adapters/pycompss/biobb_dna/intrabp_correlations/intraseqcorr.py' 2025-09-18T13:50:31,968 adding 'biobb_adapters/pycompss/biobb_dna/stiffness/average_stiffness.py' 2025-09-18T13:50:31,969 adding 'biobb_adapters/pycompss/biobb_dna/stiffness/basepair_stiffness.py' 2025-09-18T13:50:31,971 adding 'biobb_adapters/pycompss/biobb_flexdyn/__init__.py' 2025-09-18T13:50:31,972 adding 'biobb_adapters/pycompss/biobb_flexdyn/flexdyn/concoord_disco.py' 2025-09-18T13:50:31,974 adding 'biobb_adapters/pycompss/biobb_flexdyn/flexdyn/concoord_dist.py' 2025-09-18T13:50:31,975 adding 'biobb_adapters/pycompss/biobb_flexdyn/flexdyn/imod_imc.py' 2025-09-18T13:50:31,976 adding 'biobb_adapters/pycompss/biobb_flexdyn/flexdyn/imod_imode.py' 2025-09-18T13:50:31,977 adding 'biobb_adapters/pycompss/biobb_flexdyn/flexdyn/imod_imove.py' 2025-09-18T13:50:31,978 adding 'biobb_adapters/pycompss/biobb_flexdyn/flexdyn/nolb_nma.py' 2025-09-18T13:50:31,980 adding 'biobb_adapters/pycompss/biobb_flexdyn/flexdyn/prody_anm.py' 2025-09-18T13:50:31,981 adding 'biobb_adapters/pycompss/biobb_flexserv/__init__.py' 2025-09-18T13:50:31,983 adding 'biobb_adapters/pycompss/biobb_flexserv/flexserv/bd_run.py' 2025-09-18T13:50:31,984 adding 'biobb_adapters/pycompss/biobb_flexserv/flexserv/dmd_run.py' 2025-09-18T13:50:31,985 adding 'biobb_adapters/pycompss/biobb_flexserv/flexserv/nma_run.py' 2025-09-18T13:50:31,987 adding 'biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_animate.py' 2025-09-18T13:50:31,988 adding 'biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_bfactor.py' 2025-09-18T13:50:31,990 adding 'biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_collectivity.py' 2025-09-18T13:50:31,991 adding 'biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_evecs.py' 2025-09-18T13:50:31,992 adding 'biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_hinges.py' 2025-09-18T13:50:31,994 adding 'biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_info.py' 2025-09-18T13:50:31,995 adding 'biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_lindemann.py' 2025-09-18T13:50:31,996 adding 'biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_similarity.py' 2025-09-18T13:50:31,997 adding 'biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_stiffness.py' 2025-09-18T13:50:31,999 adding 'biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_unzip.py' 2025-09-18T13:50:32,000 adding 'biobb_adapters/pycompss/biobb_flexserv/pcasuite/pcz_zip.py' 2025-09-18T13:50:32,002 adding 'biobb_adapters/pycompss/biobb_godmd/__init__.py' 2025-09-18T13:50:32,003 adding 'biobb_adapters/pycompss/biobb_godmd/godmd/godmd_prep.py' 2025-09-18T13:50:32,004 adding 'biobb_adapters/pycompss/biobb_godmd/godmd/godmd_run.py' 2025-09-18T13:50:32,006 adding 'biobb_adapters/pycompss/biobb_gromacs/__init__.py' 2025-09-18T13:50:32,008 adding 'biobb_adapters/pycompss/biobb_gromacs/gromacs/editconf.py' 2025-09-18T13:50:32,009 adding 'biobb_adapters/pycompss/biobb_gromacs/gromacs/genion.py' 2025-09-18T13:50:32,010 adding 'biobb_adapters/pycompss/biobb_gromacs/gromacs/genrestr.py' 2025-09-18T13:50:32,012 adding 'biobb_adapters/pycompss/biobb_gromacs/gromacs/gmxselect.py' 2025-09-18T13:50:32,013 adding 'biobb_adapters/pycompss/biobb_gromacs/gromacs/grompp.py' 2025-09-18T13:50:32,015 adding 'biobb_adapters/pycompss/biobb_gromacs/gromacs/grompp_mdrun.py' 2025-09-18T13:50:32,016 adding 'biobb_adapters/pycompss/biobb_gromacs/gromacs/make_ndx.py' 2025-09-18T13:50:32,018 adding 'biobb_adapters/pycompss/biobb_gromacs/gromacs/mdrun.py' 2025-09-18T13:50:32,019 adding 'biobb_adapters/pycompss/biobb_gromacs/gromacs/pdb2gmx.py' 2025-09-18T13:50:32,021 adding 'biobb_adapters/pycompss/biobb_gromacs/gromacs/solvate.py' 2025-09-18T13:50:32,022 adding 'biobb_adapters/pycompss/biobb_gromacs/gromacs/trjcat.py' 2025-09-18T13:50:32,024 adding 'biobb_adapters/pycompss/biobb_gromacs/gromacs_extra/append_ligand.py' 2025-09-18T13:50:32,026 adding 'biobb_adapters/pycompss/biobb_gromacs/gromacs_extra/ndx2resttop.py' 2025-09-18T13:50:32,028 adding 'biobb_adapters/pycompss/biobb_haddock/__init__.py' 2025-09-18T13:50:32,031 adding 'biobb_adapters/pycompss/biobb_haddock/haddock/capri_eval.py' 2025-09-18T13:50:32,033 adding 'biobb_adapters/pycompss/biobb_haddock/haddock/clust_fcc.py' 2025-09-18T13:50:32,035 adding 'biobb_adapters/pycompss/biobb_haddock/haddock/contact_map.py' 2025-09-18T13:50:32,037 adding 'biobb_adapters/pycompss/biobb_haddock/haddock/em_ref.py' 2025-09-18T13:50:32,039 adding 'biobb_adapters/pycompss/biobb_haddock/haddock/flex_ref.py' 2025-09-18T13:50:32,040 adding 'biobb_adapters/pycompss/biobb_haddock/haddock/haddock3_extend.py' 2025-09-18T13:50:32,041 adding 'biobb_adapters/pycompss/biobb_haddock/haddock/haddock3_run.py' 2025-09-18T13:50:32,043 adding 'biobb_adapters/pycompss/biobb_haddock/haddock/rigid_body.py' 2025-09-18T13:50:32,044 adding 'biobb_adapters/pycompss/biobb_haddock/haddock/sele_top.py' 2025-09-18T13:50:32,045 adding 'biobb_adapters/pycompss/biobb_haddock/haddock/sele_top_clusts.py' 2025-09-18T13:50:32,046 adding 'biobb_adapters/pycompss/biobb_haddock/haddock/topology.py' 2025-09-18T13:50:32,048 adding 'biobb_adapters/pycompss/biobb_haddock/haddock/__pycache__/folder_test.cpython-310.pyc' 2025-09-18T13:50:32,050 adding 'biobb_adapters/pycompss/biobb_haddock/haddock_restraints/haddock3_accessibility.py' 2025-09-18T13:50:32,051 adding 'biobb_adapters/pycompss/biobb_haddock/haddock_restraints/haddock3_actpass_to_ambig.py' 2025-09-18T13:50:32,052 adding 'biobb_adapters/pycompss/biobb_haddock/haddock_restraints/haddock3_passive_from_active.py' 2025-09-18T13:50:32,053 adding 'biobb_adapters/pycompss/biobb_haddock/haddock_restraints/haddock3_restrain_bodies.py' 2025-09-18T13:50:32,055 adding 'biobb_adapters/pycompss/biobb_io/__init__.py' 2025-09-18T13:50:32,057 adding 'biobb_adapters/pycompss/biobb_io/api/__init__.py' 2025-09-18T13:50:32,058 adding 'biobb_adapters/pycompss/biobb_io/api/alphafold.py' 2025-09-18T13:50:32,059 adding 'biobb_adapters/pycompss/biobb_io/api/api_binding_site.py' 2025-09-18T13:50:32,060 adding 'biobb_adapters/pycompss/biobb_io/api/binding_site.py' 2025-09-18T13:50:32,062 adding 'biobb_adapters/pycompss/biobb_io/api/canonical_fasta.py' 2025-09-18T13:50:32,063 adding 'biobb_adapters/pycompss/biobb_io/api/drugbank.py' 2025-09-18T13:50:32,064 adding 'biobb_adapters/pycompss/biobb_io/api/ideal_sdf.py' 2025-09-18T13:50:32,065 adding 'biobb_adapters/pycompss/biobb_io/api/ligand.py' 2025-09-18T13:50:32,066 adding 'biobb_adapters/pycompss/biobb_io/api/ligand_pc.py' 2025-09-18T13:50:32,068 adding 'biobb_adapters/pycompss/biobb_io/api/mddb.py' 2025-09-18T13:50:32,069 adding 'biobb_adapters/pycompss/biobb_io/api/memprotmd_sim.py' 2025-09-18T13:50:32,070 adding 'biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_list.py' 2025-09-18T13:50:32,071 adding 'biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_search.py' 2025-09-18T13:50:32,073 adding 'biobb_adapters/pycompss/biobb_io/api/mmcif.py' 2025-09-18T13:50:32,074 adding 'biobb_adapters/pycompss/biobb_io/api/pdb.py' 2025-09-18T13:50:32,075 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip.py' 2025-09-18T13:50:32,076 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip_pc.py' 2025-09-18T13:50:32,078 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_pc.py' 2025-09-18T13:50:32,079 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_variants.py' 2025-09-18T13:50:32,080 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_variants_pc.py' 2025-09-18T13:50:32,081 adding 'biobb_adapters/pycompss/biobb_io/api/structure_info.py' 2025-09-18T13:50:32,083 adding 'biobb_adapters/pycompss/biobb_md/__init__.py' 2025-09-18T13:50:32,085 adding 'biobb_adapters/pycompss/biobb_md/gromacs/__init__.py' 2025-09-18T13:50:32,086 adding 'biobb_adapters/pycompss/biobb_md/gromacs/editconf.py' 2025-09-18T13:50:32,087 adding 'biobb_adapters/pycompss/biobb_md/gromacs/genion.py' 2025-09-18T13:50:32,088 adding 'biobb_adapters/pycompss/biobb_md/gromacs/genrestr.py' 2025-09-18T13:50:32,090 adding 'biobb_adapters/pycompss/biobb_md/gromacs/gmxselect.py' 2025-09-18T13:50:32,091 adding 'biobb_adapters/pycompss/biobb_md/gromacs/grompp.py' 2025-09-18T13:50:32,092 adding 'biobb_adapters/pycompss/biobb_md/gromacs/grompp_mdrun.py' 2025-09-18T13:50:32,093 adding 'biobb_adapters/pycompss/biobb_md/gromacs/make_ndx.py' 2025-09-18T13:50:32,094 adding 'biobb_adapters/pycompss/biobb_md/gromacs/mdrun.py' 2025-09-18T13:50:32,096 adding 'biobb_adapters/pycompss/biobb_md/gromacs/pdb2gmx.py' 2025-09-18T13:50:32,097 adding 'biobb_adapters/pycompss/biobb_md/gromacs/solvate.py' 2025-09-18T13:50:32,098 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/__init__.py' 2025-09-18T13:50:32,100 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand.py' 2025-09-18T13:50:32,101 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand_pc.py' 2025-09-18T13:50:32,102 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop.py' 2025-09-18T13:50:32,103 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop_pc.py' 2025-09-18T13:50:32,105 adding 'biobb_adapters/pycompss/biobb_mem/__init__.py' 2025-09-18T13:50:32,106 adding 'biobb_adapters/pycompss/biobb_mem/ambertools/cpptraj_density.py' 2025-09-18T13:50:32,108 adding 'biobb_adapters/pycompss/biobb_mem/fatslim/fatslim_apl.py' 2025-09-18T13:50:32,109 adding 'biobb_adapters/pycompss/biobb_mem/fatslim/fatslim_membranes.py' 2025-09-18T13:50:32,111 adding 'biobb_adapters/pycompss/biobb_mem/gromacs/gmx_order.py' 2025-09-18T13:50:32,112 adding 'biobb_adapters/pycompss/biobb_mem/lipyphilic_biobb/lpp_assign_leaflets.py' 2025-09-18T13:50:32,114 adding 'biobb_adapters/pycompss/biobb_mem/lipyphilic_biobb/lpp_flip_flop.py' 2025-09-18T13:50:32,115 adding 'biobb_adapters/pycompss/biobb_mem/lipyphilic_biobb/lpp_zpositions.py' 2025-09-18T13:50:32,117 adding 'biobb_adapters/pycompss/biobb_mem/mdanalysis_biobb/mda_hole.py' 2025-09-18T13:50:32,118 adding 'biobb_adapters/pycompss/biobb_ml/__init__.py' 2025-09-18T13:50:32,120 adding 'biobb_adapters/pycompss/biobb_ml/classification/__init__.py' 2025-09-18T13:50:32,121 adding 'biobb_adapters/pycompss/biobb_ml/classification/classification_predict.py' 2025-09-18T13:50:32,123 adding 'biobb_adapters/pycompss/biobb_ml/classification/decision_tree.py' 2025-09-18T13:50:32,124 adding 'biobb_adapters/pycompss/biobb_ml/classification/k_neighbors.py' 2025-09-18T13:50:32,125 adding 'biobb_adapters/pycompss/biobb_ml/classification/k_neighbors_coefficient.py' 2025-09-18T13:50:32,126 adding 'biobb_adapters/pycompss/biobb_ml/classification/logistic_regression.py' 2025-09-18T13:50:32,127 adding 'biobb_adapters/pycompss/biobb_ml/classification/random_forest_classifier.py' 2025-09-18T13:50:32,129 adding 'biobb_adapters/pycompss/biobb_ml/classification/support_vector_machine.py' 2025-09-18T13:50:32,130 adding 'biobb_adapters/pycompss/biobb_ml/clustering/__init__.py' 2025-09-18T13:50:32,132 adding 'biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_clustering.py' 2025-09-18T13:50:32,133 adding 'biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_coefficient.py' 2025-09-18T13:50:32,134 adding 'biobb_adapters/pycompss/biobb_ml/clustering/clustering_predict.py' 2025-09-18T13:50:32,135 adding 'biobb_adapters/pycompss/biobb_ml/clustering/dbscan.py' 2025-09-18T13:50:32,137 adding 'biobb_adapters/pycompss/biobb_ml/clustering/k_means.py' 2025-09-18T13:50:32,138 adding 'biobb_adapters/pycompss/biobb_ml/clustering/k_means_coefficient.py' 2025-09-18T13:50:32,139 adding 'biobb_adapters/pycompss/biobb_ml/clustering/spectral_clustering.py' 2025-09-18T13:50:32,140 adding 'biobb_adapters/pycompss/biobb_ml/clustering/spectral_coefficient.py' 2025-09-18T13:50:32,142 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/__init__.py' 2025-09-18T13:50:32,143 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_components.py' 2025-09-18T13:50:32,145 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_regression.py' 2025-09-18T13:50:32,146 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/principal_component.py' 2025-09-18T13:50:32,148 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/__init__.py' 2025-09-18T13:50:32,149 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/autoencoder_neural_network.py' 2025-09-18T13:50:32,150 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/classification_neural_network.py' 2025-09-18T13:50:32,152 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_decode.py' 2025-09-18T13:50:32,153 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_predict.py' 2025-09-18T13:50:32,154 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/recurrent_neural_network.py' 2025-09-18T13:50:32,155 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/regression_neural_network.py' 2025-09-18T13:50:32,157 adding 'biobb_adapters/pycompss/biobb_ml/regression/__init__.py' 2025-09-18T13:50:32,158 adding 'biobb_adapters/pycompss/biobb_ml/regression/linear_regression.py' 2025-09-18T13:50:32,159 adding 'biobb_adapters/pycompss/biobb_ml/regression/polynomial_regression.py' 2025-09-18T13:50:32,161 adding 'biobb_adapters/pycompss/biobb_ml/regression/random_forest_regressor.py' 2025-09-18T13:50:32,162 adding 'biobb_adapters/pycompss/biobb_ml/regression/regression_predict.py' 2025-09-18T13:50:32,164 adding 'biobb_adapters/pycompss/biobb_ml/resampling/__init__.py' 2025-09-18T13:50:32,165 adding 'biobb_adapters/pycompss/biobb_ml/resampling/oversampling.py' 2025-09-18T13:50:32,166 adding 'biobb_adapters/pycompss/biobb_ml/resampling/resampling.py' 2025-09-18T13:50:32,167 adding 'biobb_adapters/pycompss/biobb_ml/resampling/undersampling.py' 2025-09-18T13:50:32,169 adding 'biobb_adapters/pycompss/biobb_ml/utils/__init__.py' 2025-09-18T13:50:32,170 adding 'biobb_adapters/pycompss/biobb_ml/utils/correlation_matrix.py' 2025-09-18T13:50:32,171 adding 'biobb_adapters/pycompss/biobb_ml/utils/dendrogram.py' 2025-09-18T13:50:32,173 adding 'biobb_adapters/pycompss/biobb_ml/utils/drop_columns.py' 2025-09-18T13:50:32,174 adding 'biobb_adapters/pycompss/biobb_ml/utils/dummy_variables.py' 2025-09-18T13:50:32,175 adding 'biobb_adapters/pycompss/biobb_ml/utils/map_variables.py' 2025-09-18T13:50:32,176 adding 'biobb_adapters/pycompss/biobb_ml/utils/pairwise_comparison.py' 2025-09-18T13:50:32,178 adding 'biobb_adapters/pycompss/biobb_ml/utils/scale_columns.py' 2025-09-18T13:50:32,179 adding 'biobb_adapters/pycompss/biobb_model/__init__.py' 2025-09-18T13:50:32,181 adding 'biobb_adapters/pycompss/biobb_model/model/__init__.py' 2025-09-18T13:50:32,182 adding 'biobb_adapters/pycompss/biobb_model/model/checking_log.py' 2025-09-18T13:50:32,183 adding 'biobb_adapters/pycompss/biobb_model/model/fix_altlocs.py' 2025-09-18T13:50:32,185 adding 'biobb_adapters/pycompss/biobb_model/model/fix_amides.py' 2025-09-18T13:50:32,186 adding 'biobb_adapters/pycompss/biobb_model/model/fix_backbone.py' 2025-09-18T13:50:32,187 adding 'biobb_adapters/pycompss/biobb_model/model/fix_chirality.py' 2025-09-18T13:50:32,188 adding 'biobb_adapters/pycompss/biobb_model/model/fix_pdb.py' 2025-09-18T13:50:32,190 adding 'biobb_adapters/pycompss/biobb_model/model/fix_side_chain.py' 2025-09-18T13:50:32,191 adding 'biobb_adapters/pycompss/biobb_model/model/fix_side_chain_pc.py' 2025-09-18T13:50:32,192 adding 'biobb_adapters/pycompss/biobb_model/model/fix_ssbonds.py' 2025-09-18T13:50:32,194 adding 'biobb_adapters/pycompss/biobb_model/model/mutate.py' 2025-09-18T13:50:32,195 adding 'biobb_adapters/pycompss/biobb_model/model/mutate_pc.py' 2025-09-18T13:50:32,196 adding 'biobb_adapters/pycompss/biobb_pdb_tools/__init__.py' 2025-09-18T13:50:32,198 adding 'biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_chain.py' 2025-09-18T13:50:32,199 adding 'biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_chainxseg.py' 2025-09-18T13:50:32,201 adding 'biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_delhetatm.py' 2025-09-18T13:50:32,202 adding 'biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_fetch.py' 2025-09-18T13:50:32,203 adding 'biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_fixinsert.py' 2025-09-18T13:50:32,205 adding 'biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_keepcoord.py' 2025-09-18T13:50:32,206 adding 'biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_merge.py' 2025-09-18T13:50:32,207 adding 'biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_mkensemble.py' 2025-09-18T13:50:32,208 adding 'biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_reres.py' 2025-09-18T13:50:32,209 adding 'biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_seg.py' 2025-09-18T13:50:32,211 adding 'biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_selaltloc.py' 2025-09-18T13:50:32,212 adding 'biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_selchain.py' 2025-09-18T13:50:32,213 adding 'biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_selres.py' 2025-09-18T13:50:32,214 adding 'biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_splitmodel.py' 2025-09-18T13:50:32,216 adding 'biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_splitseg.py' 2025-09-18T13:50:32,217 adding 'biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_tidy.py' 2025-09-18T13:50:32,218 adding 'biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_tofasta.py' 2025-09-18T13:50:32,219 adding 'biobb_adapters/pycompss/biobb_pdb_tools/pdb_tools/biobb_pdb_uniqname.py' 2025-09-18T13:50:32,221 adding 'biobb_adapters/pycompss/biobb_pmx/__init__.py' 2025-09-18T13:50:32,223 adding 'biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxanalyse.py' 2025-09-18T13:50:32,224 adding 'biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxatom_mapping.py' 2025-09-18T13:50:32,225 adding 'biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxcreate_top.py' 2025-09-18T13:50:32,226 adding 'biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxgentop.py' 2025-09-18T13:50:32,228 adding 'biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxligand_hybrid.py' 2025-09-18T13:50:32,229 adding 'biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxmerge_ff.py' 2025-09-18T13:50:32,230 adding 'biobb_adapters/pycompss/biobb_pmx/pmxbiobb/pmxmutate.py' 2025-09-18T13:50:32,232 adding 'biobb_adapters/pycompss/biobb_pytorch/__init__.py' 2025-09-18T13:50:32,234 adding 'biobb_adapters/pycompss/biobb_pytorch/mdae/apply_mdae.py' 2025-09-18T13:50:32,235 adding 'biobb_adapters/pycompss/biobb_pytorch/mdae/train_mdae.py' 2025-09-18T13:50:32,236 adding 'biobb_adapters/pycompss/biobb_structure_utils/__init__.py' 2025-09-18T13:50:32,238 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/__init__.py' 2025-09-18T13:50:32,240 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb.py' 2025-09-18T13:50:32,241 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb_pc.py' 2025-09-18T13:50:32,242 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/closest_residues.py' 2025-09-18T13:50:32,243 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms.py' 2025-09-18T13:50:32,245 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms_pc.py' 2025-09-18T13:50:32,246 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain.py' 2025-09-18T13:50:32,247 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain_pc.py' 2025-09-18T13:50:32,249 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms.py' 2025-09-18T13:50:32,250 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms_pc.py' 2025-09-18T13:50:32,251 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model.py' 2025-09-18T13:50:32,253 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model_pc.py' 2025-09-18T13:50:32,254 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_molecule.py' 2025-09-18T13:50:32,255 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein.py' 2025-09-18T13:50:32,257 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein_pc.py' 2025-09-18T13:50:32,258 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_residues.py' 2025-09-18T13:50:32,259 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand.py' 2025-09-18T13:50:32,260 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand_pc.py' 2025-09-18T13:50:32,262 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_molecules.py' 2025-09-18T13:50:32,263 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water.py' 2025-09-18T13:50:32,264 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water_pc.py' 2025-09-18T13:50:32,265 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structure.py' 2025-09-18T13:50:32,266 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structures_pc.py' 2025-09-18T13:50:32,267 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues.py' 2025-09-18T13:50:32,269 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues_pc.py' 2025-09-18T13:50:32,270 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/str_check_add_hydrogens.py' 2025-09-18T13:50:32,271 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/structure_check.py' 2025-09-18T13:50:32,273 adding 'biobb_adapters/pycompss/biobb_vs/__init__.py' 2025-09-18T13:50:32,274 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/__init__.py' 2025-09-18T13:50:32,275 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket.py' 2025-09-18T13:50:32,277 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_filter.py' 2025-09-18T13:50:32,278 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_run.py' 2025-09-18T13:50:32,279 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_select.py' 2025-09-18T13:50:32,281 adding 'biobb_adapters/pycompss/biobb_vs/utils/__init__.py' 2025-09-18T13:50:32,282 adding 'biobb_adapters/pycompss/biobb_vs/utils/bindingsite.py' 2025-09-18T13:50:32,283 adding 'biobb_adapters/pycompss/biobb_vs/utils/box.py' 2025-09-18T13:50:32,285 adding 'biobb_adapters/pycompss/biobb_vs/utils/box_residues.py' 2025-09-18T13:50:32,286 adding 'biobb_adapters/pycompss/biobb_vs/utils/extract_model_pdbqt.py' 2025-09-18T13:50:32,287 adding 'biobb_adapters/pycompss/biobb_vs/vina/__init__.py' 2025-09-18T13:50:32,289 adding 'biobb_adapters/pycompss/biobb_vs/vina/autodock_vina.py' 2025-09-18T13:50:32,290 adding 'biobb_adapters/pycompss/biobb_vs/vina/autodock_vina_run.py' 2025-09-18T13:50:32,293 adding 'biobb_adapters-5.1.2.dist-info/licenses/LICENSE' 2025-09-18T13:50:32,295 adding 'biobb_adapters-5.1.2.dist-info/METADATA' 2025-09-18T13:50:32,296 adding 'biobb_adapters-5.1.2.dist-info/WHEEL' 2025-09-18T13:50:32,296 adding 'biobb_adapters-5.1.2.dist-info/top_level.txt' 2025-09-18T13:50:32,308 adding 'biobb_adapters-5.1.2.dist-info/RECORD' 2025-09-18T13:50:32,327 removing build/bdist.linux-armv7l/wheel 2025-09-18T13:50:32,589 Building wheel for biobb-adapters (setup.py): finished with status 'done' 2025-09-18T13:50:32,597 Created wheel for biobb-adapters: filename=biobb_adapters-5.1.2-py3-none-any.whl size=575691 sha256=400d15284223e9c57de4c1820dcef873c1db9582b3b9cfb704cfd95692d36bf9 2025-09-18T13:50:32,599 Stored in directory: /tmp/pip-ephem-wheel-cache-zlizbk_8/wheels/36/b7/a7/f0054dfc65af3f2ef316278fc5ab2959d68b0df65c3ada1d69 2025-09-18T13:50:32,642 Successfully built biobb-adapters 2025-09-18T13:50:32,666 Removed build tracker: '/tmp/pip-build-tracker-d0br6gmq'