2025-09-25T02:44:48,365 Created temporary directory: /tmp/pip-build-tracker-fhj14720 2025-09-25T02:44:48,367 Initialized build tracking at /tmp/pip-build-tracker-fhj14720 2025-09-25T02:44:48,367 Created build tracker: /tmp/pip-build-tracker-fhj14720 2025-09-25T02:44:48,368 Entered build tracker: /tmp/pip-build-tracker-fhj14720 2025-09-25T02:44:48,368 Created temporary directory: /tmp/pip-wheel-s21fb2hz 2025-09-25T02:44:48,372 Created temporary directory: /tmp/pip-ephem-wheel-cache-t_qvvqxe 2025-09-25T02:44:48,421 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-25T02:44:48,423 2 location(s) to search for versions of em-map-utils: 2025-09-25T02:44:48,423 * https://pypi.org/simple/em-map-utils/ 2025-09-25T02:44:48,423 * https://www.piwheels.org/simple/em-map-utils/ 2025-09-25T02:44:48,424 Fetching project page and analyzing links: https://pypi.org/simple/em-map-utils/ 2025-09-25T02:44:48,425 Getting page https://pypi.org/simple/em-map-utils/ 2025-09-25T02:44:48,427 Found index url https://pypi.org/simple/ 2025-09-25T02:44:48,648 Fetched page https://pypi.org/simple/em-map-utils/ as application/vnd.pypi.simple.v1+json 2025-09-25T02:44:48,649 Found link https://files.pythonhosted.org/packages/42/f1/eff45b58b2de6c53ef67a7cc199fbc57386dbf17647ab19dd7f14a85c66d/em-map-utils-0.0.1.tar.gz (from https://pypi.org/simple/em-map-utils/), version: 0.0.1 2025-09-25T02:44:48,650 Found link https://files.pythonhosted.org/packages/c0/3e/e00d1d957b02d90907216fb660c7a478899708a136608ebaad9664d7298d/em_map_utils-0.0.2.tar.gz (from https://pypi.org/simple/em-map-utils/), version: 0.0.2 2025-09-25T02:44:48,651 Found link https://files.pythonhosted.org/packages/3b/b0/91d307c6c538ae22fc55e66ae13b82741eb1a8018d53327e928a31af221e/em_map_utils-0.0.3.tar.gz (from https://pypi.org/simple/em-map-utils/), version: 0.0.3 2025-09-25T02:44:48,652 Fetching project page and analyzing links: https://www.piwheels.org/simple/em-map-utils/ 2025-09-25T02:44:48,652 Getting page https://www.piwheels.org/simple/em-map-utils/ 2025-09-25T02:44:48,654 Found index url https://www.piwheels.org/simple/ 2025-09-25T02:44:48,823 Fetched page https://www.piwheels.org/simple/em-map-utils/ as text/html 2025-09-25T02:44:48,825 Skipping link: No binaries permitted for em-map-utils: https://www.piwheels.org/simple/em-map-utils/em_map_utils-0.0.2-py3-none-any.whl#sha256=ecf32fa6855e6f6b416655f375faa7a832de46b8a2c48308a09d36b2b4764a77 (from https://www.piwheels.org/simple/em-map-utils/) 2025-09-25T02:44:48,826 Skipping link: No binaries permitted for em-map-utils: https://www.piwheels.org/simple/em-map-utils/em_map_utils-0.0.1-py3-none-any.whl#sha256=9b152cb62d91b370b8c57dd83c32e1a402a1d19f2711e7c622938e5a7c30f208 (from https://www.piwheels.org/simple/em-map-utils/) 2025-09-25T02:44:48,826 Skipping link: not a file: https://www.piwheels.org/simple/em-map-utils/ 2025-09-25T02:44:48,827 Skipping link: not a file: https://pypi.org/simple/em-map-utils/ 2025-09-25T02:44:48,846 Given no hashes to check 1 links for project 'em-map-utils': discarding no candidates 2025-09-25T02:44:48,848 Collecting em-map-utils==0.0.3 2025-09-25T02:44:48,850 Created temporary directory: /tmp/pip-unpack-ymqfmqd0 2025-09-25T02:44:49,070 Downloading em_map_utils-0.0.3.tar.gz (31 kB) 2025-09-25T02:44:49,159 Added em-map-utils==0.0.3 from https://files.pythonhosted.org/packages/3b/b0/91d307c6c538ae22fc55e66ae13b82741eb1a8018d53327e928a31af221e/em_map_utils-0.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-fhj14720' 2025-09-25T02:44:49,161 Running setup.py (path:/tmp/pip-wheel-s21fb2hz/em-map-utils_830d30f400b64c589159dd1b9418fd3d/setup.py) egg_info for package em-map-utils 2025-09-25T02:44:49,162 Created temporary directory: /tmp/pip-pip-egg-info-lyf8_s4p 2025-09-25T02:44:49,163 Preparing metadata (setup.py): started 2025-09-25T02:44:49,164 Running command python setup.py egg_info 2025-09-25T02:44:50,030 running egg_info 2025-09-25T02:44:50,060 creating /tmp/pip-pip-egg-info-lyf8_s4p/em_map_utils.egg-info 2025-09-25T02:44:50,061 writing /tmp/pip-pip-egg-info-lyf8_s4p/em_map_utils.egg-info/PKG-INFO 2025-09-25T02:44:50,064 writing dependency_links to /tmp/pip-pip-egg-info-lyf8_s4p/em_map_utils.egg-info/dependency_links.txt 2025-09-25T02:44:50,066 writing top-level names to /tmp/pip-pip-egg-info-lyf8_s4p/em_map_utils.egg-info/top_level.txt 2025-09-25T02:44:50,068 writing manifest file '/tmp/pip-pip-egg-info-lyf8_s4p/em_map_utils.egg-info/SOURCES.txt' 2025-09-25T02:44:50,155 reading manifest file '/tmp/pip-pip-egg-info-lyf8_s4p/em_map_utils.egg-info/SOURCES.txt' 2025-09-25T02:44:50,157 reading manifest template 'MANIFEST.in' 2025-09-25T02:44:50,158 warning: no files found matching '*.py' under directory 'em-map-utils' 2025-09-25T02:44:50,159 adding license file 'LICENSE' 2025-09-25T02:44:50,161 writing manifest file '/tmp/pip-pip-egg-info-lyf8_s4p/em_map_utils.egg-info/SOURCES.txt' 2025-09-25T02:44:50,266 Preparing metadata (setup.py): finished with status 'done' 2025-09-25T02:44:50,270 Source in /tmp/pip-wheel-s21fb2hz/em-map-utils_830d30f400b64c589159dd1b9418fd3d has version 0.0.3, which satisfies requirement em-map-utils==0.0.3 from https://files.pythonhosted.org/packages/3b/b0/91d307c6c538ae22fc55e66ae13b82741eb1a8018d53327e928a31af221e/em_map_utils-0.0.3.tar.gz 2025-09-25T02:44:50,271 Removed em-map-utils==0.0.3 from https://files.pythonhosted.org/packages/3b/b0/91d307c6c538ae22fc55e66ae13b82741eb1a8018d53327e928a31af221e/em_map_utils-0.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-fhj14720' 2025-09-25T02:44:50,276 Created temporary directory: /tmp/pip-unpack-cg4h7dn6 2025-09-25T02:44:50,277 Created temporary directory: /tmp/pip-unpack-zj9i_xux 2025-09-25T02:44:50,278 Building wheels for collected packages: em-map-utils 2025-09-25T02:44:50,282 Created temporary directory: /tmp/pip-wheel-yzl00hor 2025-09-25T02:44:50,283 DEPRECATION: Building 'em-map-utils' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'em-map-utils'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-09-25T02:44:50,285 Building wheel for em-map-utils (setup.py): started 2025-09-25T02:44:50,286 Destination directory: /tmp/pip-wheel-yzl00hor 2025-09-25T02:44:50,287 Running command python setup.py bdist_wheel 2025-09-25T02:44:51,137 running bdist_wheel 2025-09-25T02:44:51,268 running build 2025-09-25T02:44:51,268 running build_py 2025-09-25T02:44:51,297 creating build/lib/em_map_utils 2025-09-25T02:44:51,300 copying em_map_utils/__init__.py -> build/lib/em_map_utils 2025-09-25T02:44:51,302 copying em_map_utils/util.py -> build/lib/em_map_utils 2025-09-25T02:44:51,304 copying em_map_utils/download_emdb.py -> build/lib/em_map_utils 2025-09-25T02:44:51,307 copying em_map_utils/farm_function.py -> build/lib/em_map_utils 2025-09-25T02:44:51,309 copying em_map_utils/map_rotate.py -> build/lib/em_map_utils 2025-09-25T02:44:51,312 copying em_map_utils/filled_cuboid.py -> build/lib/em_map_utils 2025-09-25T02:44:51,314 copying em_map_utils/map_threshold.py -> build/lib/em_map_utils 2025-09-25T02:44:51,317 copying em_map_utils/structure_size_and_shape.py -> build/lib/em_map_utils 2025-09-25T02:44:51,319 copying em_map_utils/filled_sphere.py -> build/lib/em_map_utils 2025-09-25T02:44:51,321 copying em_map_utils/filled_cylinder.py -> build/lib/em_map_utils 2025-09-25T02:44:51,324 copying em_map_utils/map_covariance.py -> build/lib/em_map_utils 2025-09-25T02:44:51,326 copying em_map_utils/map_line_projections.py -> build/lib/em_map_utils 2025-09-25T02:44:51,330 creating build/lib/em_map_utils/demos 2025-09-25T02:44:51,331 copying em_map_utils/demos/demo_filled_cuboid.py -> build/lib/em_map_utils/demos 2025-09-25T02:44:51,333 copying em_map_utils/demos/__init__.py -> build/lib/em_map_utils/demos 2025-09-25T02:44:51,335 copying em_map_utils/demos/demo_map_rotate.py -> build/lib/em_map_utils/demos 2025-09-25T02:44:51,337 copying em_map_utils/demos/demo_farm_function.py -> build/lib/em_map_utils/demos 2025-09-25T02:44:51,339 copying em_map_utils/demos/ortho_surface_views.py -> build/lib/em_map_utils/demos 2025-09-25T02:44:51,341 copying em_map_utils/demos/demo_filled_cylinder.py -> build/lib/em_map_utils/demos 2025-09-25T02:44:51,343 copying em_map_utils/demos/demo_map_covariance.py -> build/lib/em_map_utils/demos 2025-09-25T02:44:51,345 copying em_map_utils/demos/demo_map_line_projections.py -> build/lib/em_map_utils/demos 2025-09-25T02:44:51,347 copying em_map_utils/demos/demo_filled_sphere.py -> build/lib/em_map_utils/demos 2025-09-25T02:44:51,378 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-09-25T02:44:51,379 !! 2025-09-25T02:44:51,380 ******************************************************************************** 2025-09-25T02:44:51,380 Please avoid running ``setup.py`` directly. 2025-09-25T02:44:51,381 Instead, use pypa/build, pypa/installer or other 2025-09-25T02:44:51,381 standards-based tools. 2025-09-25T02:44:51,382 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-09-25T02:44:51,383 or your builds will no longer be supported. 2025-09-25T02:44:51,384 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-09-25T02:44:51,384 ******************************************************************************** 2025-09-25T02:44:51,385 !! 2025-09-25T02:44:51,386 self.initialize_options() 2025-09-25T02:44:51,405 installing to build/bdist.linux-armv7l/wheel 2025-09-25T02:44:51,405 running install 2025-09-25T02:44:51,428 running install_lib 2025-09-25T02:44:51,454 creating build/bdist.linux-armv7l/wheel 2025-09-25T02:44:51,457 creating build/bdist.linux-armv7l/wheel/em_map_utils 2025-09-25T02:44:51,458 copying build/lib/em_map_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./em_map_utils 2025-09-25T02:44:51,460 copying build/lib/em_map_utils/util.py -> build/bdist.linux-armv7l/wheel/./em_map_utils 2025-09-25T02:44:51,462 copying build/lib/em_map_utils/download_emdb.py -> build/bdist.linux-armv7l/wheel/./em_map_utils 2025-09-25T02:44:51,464 copying build/lib/em_map_utils/farm_function.py -> build/bdist.linux-armv7l/wheel/./em_map_utils 2025-09-25T02:44:51,467 copying build/lib/em_map_utils/map_rotate.py -> build/bdist.linux-armv7l/wheel/./em_map_utils 2025-09-25T02:44:51,469 copying build/lib/em_map_utils/filled_cuboid.py -> build/bdist.linux-armv7l/wheel/./em_map_utils 2025-09-25T02:44:51,471 copying build/lib/em_map_utils/map_threshold.py -> build/bdist.linux-armv7l/wheel/./em_map_utils 2025-09-25T02:44:51,473 copying build/lib/em_map_utils/structure_size_and_shape.py -> build/bdist.linux-armv7l/wheel/./em_map_utils 2025-09-25T02:44:51,476 creating build/bdist.linux-armv7l/wheel/em_map_utils/demos 2025-09-25T02:44:51,477 copying build/lib/em_map_utils/demos/demo_filled_cuboid.py -> build/bdist.linux-armv7l/wheel/./em_map_utils/demos 2025-09-25T02:44:51,479 copying build/lib/em_map_utils/demos/__init__.py -> build/bdist.linux-armv7l/wheel/./em_map_utils/demos 2025-09-25T02:44:51,481 copying build/lib/em_map_utils/demos/demo_map_rotate.py -> build/bdist.linux-armv7l/wheel/./em_map_utils/demos 2025-09-25T02:44:51,483 copying build/lib/em_map_utils/demos/demo_farm_function.py -> build/bdist.linux-armv7l/wheel/./em_map_utils/demos 2025-09-25T02:44:51,486 copying build/lib/em_map_utils/demos/ortho_surface_views.py -> build/bdist.linux-armv7l/wheel/./em_map_utils/demos 2025-09-25T02:44:51,488 copying build/lib/em_map_utils/demos/demo_filled_cylinder.py -> build/bdist.linux-armv7l/wheel/./em_map_utils/demos 2025-09-25T02:44:51,490 copying build/lib/em_map_utils/demos/demo_map_covariance.py -> build/bdist.linux-armv7l/wheel/./em_map_utils/demos 2025-09-25T02:44:51,492 copying build/lib/em_map_utils/demos/demo_map_line_projections.py -> build/bdist.linux-armv7l/wheel/./em_map_utils/demos 2025-09-25T02:44:51,494 copying build/lib/em_map_utils/demos/demo_filled_sphere.py -> build/bdist.linux-armv7l/wheel/./em_map_utils/demos 2025-09-25T02:44:51,496 copying build/lib/em_map_utils/filled_sphere.py -> build/bdist.linux-armv7l/wheel/./em_map_utils 2025-09-25T02:44:51,498 copying build/lib/em_map_utils/filled_cylinder.py -> build/bdist.linux-armv7l/wheel/./em_map_utils 2025-09-25T02:44:51,500 copying build/lib/em_map_utils/map_covariance.py -> build/bdist.linux-armv7l/wheel/./em_map_utils 2025-09-25T02:44:51,503 copying build/lib/em_map_utils/map_line_projections.py -> build/bdist.linux-armv7l/wheel/./em_map_utils 2025-09-25T02:44:51,505 running install_egg_info 2025-09-25T02:44:51,540 running egg_info 2025-09-25T02:44:51,568 writing em_map_utils.egg-info/PKG-INFO 2025-09-25T02:44:51,571 writing dependency_links to em_map_utils.egg-info/dependency_links.txt 2025-09-25T02:44:51,573 writing top-level names to em_map_utils.egg-info/top_level.txt 2025-09-25T02:44:51,605 reading manifest file 'em_map_utils.egg-info/SOURCES.txt' 2025-09-25T02:44:51,609 reading manifest template 'MANIFEST.in' 2025-09-25T02:44:51,610 warning: no files found matching '*.py' under directory 'em-map-utils' 2025-09-25T02:44:51,611 adding license file 'LICENSE' 2025-09-25T02:44:51,614 writing manifest file 'em_map_utils.egg-info/SOURCES.txt' 2025-09-25T02:44:51,616 Copying em_map_utils.egg-info to build/bdist.linux-armv7l/wheel/./em_map_utils-0.0.3-py3.11.egg-info 2025-09-25T02:44:51,624 running install_scripts 2025-09-25T02:44:51,635 creating build/bdist.linux-armv7l/wheel/em_map_utils-0.0.3.dist-info/WHEEL 2025-09-25T02:44:51,638 creating '/tmp/pip-wheel-yzl00hor/em_map_utils-0.0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-25T02:44:51,640 adding 'em_map_utils/__init__.py' 2025-09-25T02:44:51,642 adding 'em_map_utils/download_emdb.py' 2025-09-25T02:44:51,644 adding 'em_map_utils/farm_function.py' 2025-09-25T02:44:51,646 adding 'em_map_utils/filled_cuboid.py' 2025-09-25T02:44:51,647 adding 'em_map_utils/filled_cylinder.py' 2025-09-25T02:44:51,649 adding 'em_map_utils/filled_sphere.py' 2025-09-25T02:44:51,651 adding 'em_map_utils/map_covariance.py' 2025-09-25T02:44:51,653 adding 'em_map_utils/map_line_projections.py' 2025-09-25T02:44:51,654 adding 'em_map_utils/map_rotate.py' 2025-09-25T02:44:51,656 adding 'em_map_utils/map_threshold.py' 2025-09-25T02:44:51,658 adding 'em_map_utils/structure_size_and_shape.py' 2025-09-25T02:44:51,660 adding 'em_map_utils/util.py' 2025-09-25T02:44:51,661 adding 'em_map_utils/demos/__init__.py' 2025-09-25T02:44:51,663 adding 'em_map_utils/demos/demo_farm_function.py' 2025-09-25T02:44:51,664 adding 'em_map_utils/demos/demo_filled_cuboid.py' 2025-09-25T02:44:51,666 adding 'em_map_utils/demos/demo_filled_cylinder.py' 2025-09-25T02:44:51,667 adding 'em_map_utils/demos/demo_filled_sphere.py' 2025-09-25T02:44:51,668 adding 'em_map_utils/demos/demo_map_covariance.py' 2025-09-25T02:44:51,670 adding 'em_map_utils/demos/demo_map_line_projections.py' 2025-09-25T02:44:51,671 adding 'em_map_utils/demos/demo_map_rotate.py' 2025-09-25T02:44:51,673 adding 'em_map_utils/demos/ortho_surface_views.py' 2025-09-25T02:44:51,676 adding 'em_map_utils-0.0.3.dist-info/licenses/LICENSE' 2025-09-25T02:44:51,678 adding 'em_map_utils-0.0.3.dist-info/METADATA' 2025-09-25T02:44:51,679 adding 'em_map_utils-0.0.3.dist-info/WHEEL' 2025-09-25T02:44:51,680 adding 'em_map_utils-0.0.3.dist-info/top_level.txt' 2025-09-25T02:44:51,681 adding 'em_map_utils-0.0.3.dist-info/RECORD' 2025-09-25T02:44:51,683 removing build/bdist.linux-armv7l/wheel 2025-09-25T02:44:51,798 Building wheel for em-map-utils (setup.py): finished with status 'done' 2025-09-25T02:44:51,800 Created wheel for em-map-utils: filename=em_map_utils-0.0.3-py3-none-any.whl size=43453 sha256=5feeb4f99075678a3043c6ee84242da09405c9a0dee7d8518139e1e6285ba73a 2025-09-25T02:44:51,802 Stored in directory: /tmp/pip-ephem-wheel-cache-t_qvvqxe/wheels/d4/b5/55/e096edec52e964e90eb28299ae05b2c4b88f74e42ac5464cd9 2025-09-25T02:44:51,813 Successfully built em-map-utils 2025-09-25T02:44:51,818 Removed build tracker: '/tmp/pip-build-tracker-fhj14720'