2025-09-27T03:07:23,553 Created temporary directory: /tmp/pip-ephem-wheel-cache-p56p7m5o 2025-09-27T03:07:23,555 Created temporary directory: /tmp/pip-build-tracker-uzyx037c 2025-09-27T03:07:23,556 Initialized build tracking at /tmp/pip-build-tracker-uzyx037c 2025-09-27T03:07:23,556 Created build tracker: /tmp/pip-build-tracker-uzyx037c 2025-09-27T03:07:23,556 Entered build tracker: /tmp/pip-build-tracker-uzyx037c 2025-09-27T03:07:23,557 Created temporary directory: /tmp/pip-wheel-woa09pae 2025-09-27T03:07:23,560 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-09-27T03:07:23,563 Created temporary directory: /tmp/pip-ephem-wheel-cache-ajzzn7gc 2025-09-27T03:07:23,584 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-27T03:07:23,588 2 location(s) to search for versions of tidytcells: 2025-09-27T03:07:23,588 * https://pypi.org/simple/tidytcells/ 2025-09-27T03:07:23,588 * https://www.piwheels.org/simple/tidytcells/ 2025-09-27T03:07:23,589 Fetching project page and analyzing links: https://pypi.org/simple/tidytcells/ 2025-09-27T03:07:23,590 Getting page https://pypi.org/simple/tidytcells/ 2025-09-27T03:07:23,591 Found index url https://pypi.org/simple 2025-09-27T03:07:23,816 Fetched page https://pypi.org/simple/tidytcells/ as application/vnd.pypi.simple.v1+json 2025-09-27T03:07:23,831 Skipping link: No binaries permitted for tidytcells: 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https://archive1.piwheels.org/simple/tidytcells/tidytcells-1.0.0-py3-none-any.whl#sha256=b81c7a24f12818d8615a095d0e96d05c2436f7211710a5f6b6cc4ea2b4ea174e (from https://www.piwheels.org/simple/tidytcells/) (requires-python:>=3.6) 2025-09-27T03:07:24,091 Skipping link: No binaries permitted for tidytcells: https://archive1.piwheels.org/simple/tidytcells/tidytcells-0.2.0-py3-none-any.whl#sha256=0c0f622287336936c979aef5380b9c248119506899097dceeffab2d53dba5450 (from https://www.piwheels.org/simple/tidytcells/) (requires-python:>=3.10) 2025-09-27T03:07:24,092 Skipping link: No binaries permitted for tidytcells: https://www.piwheels.org/simple/tidytcells/tidytcells-0.1.0-py3-none-any.whl#sha256=e7160a0d65c6d4d7a271eee2d0529231e9ffd002edd965959ba56c18083d5f4c (from https://www.piwheels.org/simple/tidytcells/) (requires-python:>=3.10) 2025-09-27T03:07:24,093 Skipping link: No binaries permitted for tidytcells: https://www.piwheels.org/simple/tidytcells/tidytcells-0.0.5-py3-none-any.whl#sha256=e8e7640c3b6e76605f9755a68c4f2bf5223570a9118fda900f4be726558347ea (from https://www.piwheels.org/simple/tidytcells/) (requires-python:>=3.10) 2025-09-27T03:07:24,093 Skipping link: No binaries permitted for tidytcells: https://archive1.piwheels.org/simple/tidytcells/tidytcells-0.0.4-py3-none-any.whl#sha256=b6a29bf5529be0dbbd20063907b612e4e5b56d6173361b90aced5c40916464b6 (from https://www.piwheels.org/simple/tidytcells/) (requires-python:>=3.10) 2025-09-27T03:07:24,094 Skipping link: No binaries permitted for tidytcells: https://archive1.piwheels.org/simple/tidytcells/tidytcells-0.0.3-py3-none-any.whl#sha256=919339e45c7abb0e3da387ec879f5a86c91023d0162d124b8230b39e93676ad5 (from https://www.piwheels.org/simple/tidytcells/) (requires-python:>=3.10) 2025-09-27T03:07:24,094 Skipping link: No binaries permitted for tidytcells: https://archive1.piwheels.org/simple/tidytcells/tidytcells-0.0.2-py3-none-any.whl#sha256=8114364b68c0798f2699ba7315f4d9dcc701ff382b39d3394ce8e0fc0d5b60ac (from https://www.piwheels.org/simple/tidytcells/) (requires-python:>=3.10) 2025-09-27T03:07:24,095 Skipping link: No binaries permitted for tidytcells: https://archive1.piwheels.org/simple/tidytcells/tidytcells-0.0.1-py3-none-any.whl#sha256=f83cc959182da20d9aee6022c4bf0a32746ee87059d71b8c02eb592860962043 (from https://www.piwheels.org/simple/tidytcells/) (requires-python:>=3.10) 2025-09-27T03:07:24,095 Skipping link: not a file: https://www.piwheels.org/simple/tidytcells/ 2025-09-27T03:07:24,096 Skipping link: not a file: https://pypi.org/simple/tidytcells/ 2025-09-27T03:07:24,119 Given no hashes to check 1 links for project 'tidytcells': discarding no candidates 2025-09-27T03:07:24,137 Collecting tidytcells==2.2.0 2025-09-27T03:07:24,139 Created temporary directory: /tmp/pip-unpack-rdzrziry 2025-09-27T03:07:24,356 Downloading tidytcells-2.2.0.tar.gz (105 kB) 2025-09-27T03:07:24,599 Added tidytcells==2.2.0 from https://files.pythonhosted.org/packages/35/47/c1f5aa0caaf01d43791793f9c8dd3fb46f2756eabdd7e1df2510c14c6693/tidytcells-2.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-uzyx037c' 2025-09-27T03:07:24,603 Created temporary directory: /tmp/pip-build-env-jyc81axl 2025-09-27T03:07:24,608 Installing build dependencies: started 2025-09-27T03:07:24,609 Running command pip subprocess to install build dependencies 2025-09-27T03:07:25,964 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-09-27T03:07:26,528 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-09-27T03:07:26,550 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-27T03:07:28,274 Collecting setuptools 2025-09-27T03:07:28,366 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-09-27T03:07:31,447 Installing collected packages: setuptools 2025-09-27T03:07:34,992 Successfully installed setuptools-80.9.0 2025-09-27T03:07:35,256 Installing build dependencies: finished with status 'done' 2025-09-27T03:07:35,263 Getting requirements to build wheel: started 2025-09-27T03:07:35,264 Running command Getting requirements to build wheel 2025-09-27T03:07:35,856 No `packages` or `py_modules` configuration, performing automatic discovery. 2025-09-27T03:07:35,856 `src-layout` detected -- analysing ./src 2025-09-27T03:07:35,864 discovered packages -- ['tidytcells', 'tidytcells.aa', 'tidytcells._query_engine', 'tidytcells._resources', 'tidytcells._utils', 'tidytcells.mh', 'tidytcells._standardized_gene_symbol', 'tidytcells.tr', 'tidytcells.junction', 'tidytcells.ig'] 2025-09-27T03:07:35,864 discovered py_modules -- [] 2025-09-27T03:07:35,950 /tmp/pip-build-env-jyc81axl/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-27T03:07:35,950 !! 2025-09-27T03:07:35,951 ******************************************************************************** 2025-09-27T03:07:35,952 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-27T03:07:35,952 License :: OSI Approved :: MIT License 2025-09-27T03:07:35,953 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-27T03:07:35,954 ******************************************************************************** 2025-09-27T03:07:35,955 !! 2025-09-27T03:07:35,955 dist._finalize_license_expression() 2025-09-27T03:07:35,956 /tmp/pip-build-env-jyc81axl/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-27T03:07:35,956 !! 2025-09-27T03:07:35,957 ******************************************************************************** 2025-09-27T03:07:35,958 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-27T03:07:35,959 License :: OSI Approved :: MIT License 2025-09-27T03:07:35,960 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-27T03:07:35,961 ******************************************************************************** 2025-09-27T03:07:35,962 !! 2025-09-27T03:07:35,963 self._finalize_license_expression() 2025-09-27T03:07:35,963 running egg_info 2025-09-27T03:07:35,968 writing src/tidytcells.egg-info/PKG-INFO 2025-09-27T03:07:35,975 writing dependency_links to src/tidytcells.egg-info/dependency_links.txt 2025-09-27T03:07:35,979 writing requirements to src/tidytcells.egg-info/requires.txt 2025-09-27T03:07:35,980 writing top-level names to src/tidytcells.egg-info/top_level.txt 2025-09-27T03:07:36,011 reading manifest file 'src/tidytcells.egg-info/SOURCES.txt' 2025-09-27T03:07:36,016 reading manifest template 'MANIFEST.in' 2025-09-27T03:07:36,018 adding license file 'LICENSE.txt' 2025-09-27T03:07:36,023 writing manifest file 'src/tidytcells.egg-info/SOURCES.txt' 2025-09-27T03:07:36,119 Getting requirements to build wheel: finished with status 'done' 2025-09-27T03:07:36,122 Created temporary directory: /tmp/pip-modern-metadata-26vcq64e 2025-09-27T03:07:36,124 Preparing metadata (pyproject.toml): started 2025-09-27T03:07:36,126 Running command Preparing metadata (pyproject.toml) 2025-09-27T03:07:36,701 No `packages` or `py_modules` configuration, performing automatic discovery. 2025-09-27T03:07:36,702 `src-layout` detected -- analysing ./src 2025-09-27T03:07:36,706 discovered packages -- ['tidytcells', 'tidytcells.aa', 'tidytcells._query_engine', 'tidytcells._resources', 'tidytcells._utils', 'tidytcells.mh', 'tidytcells._standardized_gene_symbol', 'tidytcells.tr', 'tidytcells.junction', 'tidytcells.ig'] 2025-09-27T03:07:36,707 discovered py_modules -- [] 2025-09-27T03:07:36,792 /tmp/pip-build-env-jyc81axl/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-27T03:07:36,793 !! 2025-09-27T03:07:36,795 ******************************************************************************** 2025-09-27T03:07:36,795 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-27T03:07:36,796 License :: OSI Approved :: MIT License 2025-09-27T03:07:36,797 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-27T03:07:36,797 ******************************************************************************** 2025-09-27T03:07:36,798 !! 2025-09-27T03:07:36,799 dist._finalize_license_expression() 2025-09-27T03:07:36,799 /tmp/pip-build-env-jyc81axl/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-27T03:07:36,800 !! 2025-09-27T03:07:36,801 ******************************************************************************** 2025-09-27T03:07:36,801 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-27T03:07:36,802 License :: OSI Approved :: MIT License 2025-09-27T03:07:36,803 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-27T03:07:36,803 ******************************************************************************** 2025-09-27T03:07:36,804 !! 2025-09-27T03:07:36,805 self._finalize_license_expression() 2025-09-27T03:07:36,806 running dist_info 2025-09-27T03:07:36,818 creating /tmp/pip-modern-metadata-26vcq64e/tidytcells.egg-info 2025-09-27T03:07:36,819 writing /tmp/pip-modern-metadata-26vcq64e/tidytcells.egg-info/PKG-INFO 2025-09-27T03:07:36,827 writing dependency_links to /tmp/pip-modern-metadata-26vcq64e/tidytcells.egg-info/dependency_links.txt 2025-09-27T03:07:36,831 writing requirements to /tmp/pip-modern-metadata-26vcq64e/tidytcells.egg-info/requires.txt 2025-09-27T03:07:36,832 writing top-level names to /tmp/pip-modern-metadata-26vcq64e/tidytcells.egg-info/top_level.txt 2025-09-27T03:07:36,833 writing manifest file '/tmp/pip-modern-metadata-26vcq64e/tidytcells.egg-info/SOURCES.txt' 2025-09-27T03:07:36,861 reading manifest file '/tmp/pip-modern-metadata-26vcq64e/tidytcells.egg-info/SOURCES.txt' 2025-09-27T03:07:36,863 reading manifest template 'MANIFEST.in' 2025-09-27T03:07:36,865 adding license file 'LICENSE.txt' 2025-09-27T03:07:36,869 writing manifest file '/tmp/pip-modern-metadata-26vcq64e/tidytcells.egg-info/SOURCES.txt' 2025-09-27T03:07:36,871 creating '/tmp/pip-modern-metadata-26vcq64e/tidytcells-2.2.0.dist-info' 2025-09-27T03:07:36,992 Preparing metadata (pyproject.toml): finished with status 'done' 2025-09-27T03:07:36,997 Source in /tmp/pip-wheel-woa09pae/tidytcells_6c7b049e3ce146a1a3c1286f3ac07264 has version 2.2.0, which satisfies requirement tidytcells==2.2.0 from https://files.pythonhosted.org/packages/35/47/c1f5aa0caaf01d43791793f9c8dd3fb46f2756eabdd7e1df2510c14c6693/tidytcells-2.2.0.tar.gz 2025-09-27T03:07:36,998 Removed tidytcells==2.2.0 from https://files.pythonhosted.org/packages/35/47/c1f5aa0caaf01d43791793f9c8dd3fb46f2756eabdd7e1df2510c14c6693/tidytcells-2.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-uzyx037c' 2025-09-27T03:07:37,003 Created temporary directory: /tmp/pip-unpack-6abk7r1b 2025-09-27T03:07:37,004 Building wheels for collected packages: tidytcells 2025-09-27T03:07:37,008 Created temporary directory: /tmp/pip-wheel-2pztouzv 2025-09-27T03:07:37,008 Destination directory: /tmp/pip-wheel-2pztouzv 2025-09-27T03:07:37,011 Building wheel for tidytcells (pyproject.toml): started 2025-09-27T03:07:37,012 Running command Building wheel for tidytcells (pyproject.toml) 2025-09-27T03:07:37,547 No `packages` or `py_modules` configuration, performing automatic discovery. 2025-09-27T03:07:37,547 `src-layout` detected -- analysing ./src 2025-09-27T03:07:37,552 discovered packages -- ['tidytcells', 'tidytcells.aa', 'tidytcells._query_engine', 'tidytcells._resources', 'tidytcells._utils', 'tidytcells.mh', 'tidytcells._standardized_gene_symbol', 'tidytcells.tr', 'tidytcells.junction', 'tidytcells.ig'] 2025-09-27T03:07:37,552 discovered py_modules -- [] 2025-09-27T03:07:37,629 /tmp/pip-build-env-jyc81axl/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-27T03:07:37,629 !! 2025-09-27T03:07:37,630 ******************************************************************************** 2025-09-27T03:07:37,631 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-27T03:07:37,632 License :: OSI Approved :: MIT License 2025-09-27T03:07:37,633 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-27T03:07:37,633 ******************************************************************************** 2025-09-27T03:07:37,634 !! 2025-09-27T03:07:37,634 dist._finalize_license_expression() 2025-09-27T03:07:37,635 /tmp/pip-build-env-jyc81axl/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-09-27T03:07:37,635 !! 2025-09-27T03:07:37,636 ******************************************************************************** 2025-09-27T03:07:37,637 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-09-27T03:07:37,638 License :: OSI Approved :: MIT License 2025-09-27T03:07:37,639 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-09-27T03:07:37,639 ******************************************************************************** 2025-09-27T03:07:37,640 !! 2025-09-27T03:07:37,641 self._finalize_license_expression() 2025-09-27T03:07:37,641 running bdist_wheel 2025-09-27T03:07:37,658 running build 2025-09-27T03:07:37,658 running build_py 2025-09-27T03:07:37,665 creating build/lib/tidytcells 2025-09-27T03:07:37,667 copying src/tidytcells/__init__.py -> build/lib/tidytcells 2025-09-27T03:07:37,669 creating build/lib/tidytcells/aa 2025-09-27T03:07:37,670 copying src/tidytcells/aa/__init__.py -> build/lib/tidytcells/aa 2025-09-27T03:07:37,672 copying src/tidytcells/aa/_standardize.py -> build/lib/tidytcells/aa 2025-09-27T03:07:37,675 creating build/lib/tidytcells/_query_engine 2025-09-27T03:07:37,676 copying src/tidytcells/_query_engine/mus_musculus_tr_query_engine.py -> build/lib/tidytcells/_query_engine 2025-09-27T03:07:37,677 copying src/tidytcells/_query_engine/tr_query_engine.py -> build/lib/tidytcells/_query_engine 2025-09-27T03:07:37,679 copying src/tidytcells/_query_engine/__init__.py -> build/lib/tidytcells/_query_engine 2025-09-27T03:07:37,681 copying src/tidytcells/_query_engine/query_engine.py -> build/lib/tidytcells/_query_engine 2025-09-27T03:07:37,683 copying src/tidytcells/_query_engine/homo_sapiens_tr_query_engine.py -> build/lib/tidytcells/_query_engine 2025-09-27T03:07:37,685 copying src/tidytcells/_query_engine/homo_sapiens_ig_query_engine.py -> build/lib/tidytcells/_query_engine 2025-09-27T03:07:37,687 copying src/tidytcells/_query_engine/mus_musculus_mh_query_engine.py -> build/lib/tidytcells/_query_engine 2025-09-27T03:07:37,688 copying src/tidytcells/_query_engine/hla_query_engine.py -> build/lib/tidytcells/_query_engine 2025-09-27T03:07:37,691 creating build/lib/tidytcells/_resources 2025-09-27T03:07:37,692 copying src/tidytcells/_resources/__init__.py -> build/lib/tidytcells/_resources 2025-09-27T03:07:37,694 creating build/lib/tidytcells/_utils 2025-09-27T03:07:37,695 copying src/tidytcells/_utils/string_cleaning.py -> build/lib/tidytcells/_utils 2025-09-27T03:07:37,697 copying src/tidytcells/_utils/__init__.py -> build/lib/tidytcells/_utils 2025-09-27T03:07:37,699 copying src/tidytcells/_utils/warnings.py -> build/lib/tidytcells/_utils 2025-09-27T03:07:37,701 copying src/tidytcells/_utils/conserved_aa_lookup.py -> build/lib/tidytcells/_utils 2025-09-27T03:07:37,702 copying src/tidytcells/_utils/parameter.py -> build/lib/tidytcells/_utils 2025-09-27T03:07:37,705 creating build/lib/tidytcells/mh 2025-09-27T03:07:37,706 copying src/tidytcells/mh/__init__.py -> build/lib/tidytcells/mh 2025-09-27T03:07:37,708 copying src/tidytcells/mh/_standardize.py -> build/lib/tidytcells/mh 2025-09-27T03:07:37,710 copying src/tidytcells/mh/_get_class.py -> build/lib/tidytcells/mh 2025-09-27T03:07:37,712 copying src/tidytcells/mh/_query.py -> build/lib/tidytcells/mh 2025-09-27T03:07:37,714 copying src/tidytcells/mh/_get_chain.py -> build/lib/tidytcells/mh 2025-09-27T03:07:37,716 creating build/lib/tidytcells/_standardized_gene_symbol 2025-09-27T03:07:37,717 copying src/tidytcells/_standardized_gene_symbol/__init__.py -> build/lib/tidytcells/_standardized_gene_symbol 2025-09-27T03:07:37,719 copying src/tidytcells/_standardized_gene_symbol/standardized_ig_symbol.py -> build/lib/tidytcells/_standardized_gene_symbol 2025-09-27T03:07:37,721 copying src/tidytcells/_standardized_gene_symbol/standardized_tr_symbol.py -> build/lib/tidytcells/_standardized_gene_symbol 2025-09-27T03:07:37,723 copying src/tidytcells/_standardized_gene_symbol/standardized_mus_musculus_tr_symbol.py -> build/lib/tidytcells/_standardized_gene_symbol 2025-09-27T03:07:37,725 copying src/tidytcells/_standardized_gene_symbol/standardized_gene_symbol.py -> build/lib/tidytcells/_standardized_gene_symbol 2025-09-27T03:07:37,727 copying src/tidytcells/_standardized_gene_symbol/standardized_homo_sapiens_ig_symbol.py -> build/lib/tidytcells/_standardized_gene_symbol 2025-09-27T03:07:37,729 copying src/tidytcells/_standardized_gene_symbol/standardized_mus_musculus_mh_symbol.py -> build/lib/tidytcells/_standardized_gene_symbol 2025-09-27T03:07:37,730 copying src/tidytcells/_standardized_gene_symbol/standardized_homo_sapiens_tr_symbol.py -> build/lib/tidytcells/_standardized_gene_symbol 2025-09-27T03:07:37,732 copying src/tidytcells/_standardized_gene_symbol/standardized_hla_symbol.py -> build/lib/tidytcells/_standardized_gene_symbol 2025-09-27T03:07:37,735 creating build/lib/tidytcells/tr 2025-09-27T03:07:37,736 copying src/tidytcells/tr/__init__.py -> build/lib/tidytcells/tr 2025-09-27T03:07:37,737 copying src/tidytcells/tr/_standardize.py -> build/lib/tidytcells/tr 2025-09-27T03:07:37,740 copying src/tidytcells/tr/_query.py -> build/lib/tidytcells/tr 2025-09-27T03:07:37,742 copying src/tidytcells/tr/_get_aa_sequence.py -> build/lib/tidytcells/tr 2025-09-27T03:07:37,744 creating build/lib/tidytcells/junction 2025-09-27T03:07:37,745 copying src/tidytcells/junction/__init__.py -> build/lib/tidytcells/junction 2025-09-27T03:07:37,747 copying src/tidytcells/junction/_standardize.py -> build/lib/tidytcells/junction 2025-09-27T03:07:37,750 creating build/lib/tidytcells/ig 2025-09-27T03:07:37,751 copying src/tidytcells/ig/__init__.py -> build/lib/tidytcells/ig 2025-09-27T03:07:37,753 copying src/tidytcells/ig/_standardize.py -> build/lib/tidytcells/ig 2025-09-27T03:07:37,755 copying src/tidytcells/ig/_query.py -> build/lib/tidytcells/ig 2025-09-27T03:07:37,757 copying src/tidytcells/ig/_get_aa_sequence.py -> build/lib/tidytcells/ig 2025-09-27T03:07:37,759 running egg_info 2025-09-27T03:07:37,770 writing src/tidytcells.egg-info/PKG-INFO 2025-09-27T03:07:37,777 writing dependency_links to src/tidytcells.egg-info/dependency_links.txt 2025-09-27T03:07:37,781 writing requirements to src/tidytcells.egg-info/requires.txt 2025-09-27T03:07:37,782 writing top-level names to src/tidytcells.egg-info/top_level.txt 2025-09-27T03:07:37,799 reading manifest file 'src/tidytcells.egg-info/SOURCES.txt' 2025-09-27T03:07:37,804 reading manifest template 'MANIFEST.in' 2025-09-27T03:07:37,806 adding license file 'LICENSE.txt' 2025-09-27T03:07:37,811 writing manifest file 'src/tidytcells.egg-info/SOURCES.txt' 2025-09-27T03:07:37,818 copying src/tidytcells/_resources/homosapiens_ig_aa_sequences.json -> build/lib/tidytcells/_resources 2025-09-27T03:07:37,826 copying src/tidytcells/_resources/homosapiens_ig_synonyms.json -> build/lib/tidytcells/_resources 2025-09-27T03:07:37,828 copying src/tidytcells/_resources/homosapiens_mh_synonyms.json -> build/lib/tidytcells/_resources 2025-09-27T03:07:37,830 copying src/tidytcells/_resources/homosapiens_tr_aa_sequences.json -> build/lib/tidytcells/_resources 2025-09-27T03:07:37,837 copying src/tidytcells/_resources/homosapiens_tr_synonyms.json -> build/lib/tidytcells/_resources 2025-09-27T03:07:37,839 copying src/tidytcells/_resources/musmusculus_mh_synonyms.json -> build/lib/tidytcells/_resources 2025-09-27T03:07:37,842 copying src/tidytcells/_resources/musmusculus_tr_aa_sequences.json -> build/lib/tidytcells/_resources 2025-09-27T03:07:37,847 copying src/tidytcells/_resources/valid_homosapiens_ig.json -> build/lib/tidytcells/_resources 2025-09-27T03:07:37,850 copying src/tidytcells/_resources/valid_homosapiens_mh.json -> build/lib/tidytcells/_resources 2025-09-27T03:07:37,891 copying src/tidytcells/_resources/valid_homosapiens_tr.json -> build/lib/tidytcells/_resources 2025-09-27T03:07:37,894 copying src/tidytcells/_resources/valid_musmusculus_mh.json -> build/lib/tidytcells/_resources 2025-09-27T03:07:37,896 copying src/tidytcells/_resources/valid_musmusculus_tr.json -> build/lib/tidytcells/_resources 2025-09-27T03:07:37,912 installing to build/bdist.linux-armv7l/wheel 2025-09-27T03:07:37,913 running install 2025-09-27T03:07:37,936 running install_lib 2025-09-27T03:07:37,942 creating build/bdist.linux-armv7l/wheel 2025-09-27T03:07:37,944 creating build/bdist.linux-armv7l/wheel/tidytcells 2025-09-27T03:07:37,946 creating build/bdist.linux-armv7l/wheel/tidytcells/aa 2025-09-27T03:07:37,947 copying build/lib/tidytcells/aa/__init__.py -> build/bdist.linux-armv7l/wheel/./tidytcells/aa 2025-09-27T03:07:37,949 copying build/lib/tidytcells/aa/_standardize.py -> build/bdist.linux-armv7l/wheel/./tidytcells/aa 2025-09-27T03:07:37,952 creating build/bdist.linux-armv7l/wheel/tidytcells/_query_engine 2025-09-27T03:07:37,953 copying build/lib/tidytcells/_query_engine/mus_musculus_tr_query_engine.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_query_engine 2025-09-27T03:07:37,954 copying build/lib/tidytcells/_query_engine/tr_query_engine.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_query_engine 2025-09-27T03:07:37,956 copying build/lib/tidytcells/_query_engine/__init__.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_query_engine 2025-09-27T03:07:37,958 copying build/lib/tidytcells/_query_engine/query_engine.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_query_engine 2025-09-27T03:07:37,960 copying build/lib/tidytcells/_query_engine/homo_sapiens_tr_query_engine.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_query_engine 2025-09-27T03:07:37,962 copying build/lib/tidytcells/_query_engine/homo_sapiens_ig_query_engine.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_query_engine 2025-09-27T03:07:37,964 copying build/lib/tidytcells/_query_engine/mus_musculus_mh_query_engine.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_query_engine 2025-09-27T03:07:37,966 copying build/lib/tidytcells/_query_engine/hla_query_engine.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_query_engine 2025-09-27T03:07:37,967 copying build/lib/tidytcells/__init__.py -> build/bdist.linux-armv7l/wheel/./tidytcells 2025-09-27T03:07:37,970 creating build/bdist.linux-armv7l/wheel/tidytcells/_resources 2025-09-27T03:07:37,971 copying build/lib/tidytcells/_resources/musmusculus_tr_aa_sequences.json -> build/bdist.linux-armv7l/wheel/./tidytcells/_resources 2025-09-27T03:07:37,976 copying build/lib/tidytcells/_resources/musmusculus_mh_synonyms.json -> build/bdist.linux-armv7l/wheel/./tidytcells/_resources 2025-09-27T03:07:37,978 copying build/lib/tidytcells/_resources/valid_homosapiens_tr.json -> build/bdist.linux-armv7l/wheel/./tidytcells/_resources 2025-09-27T03:07:37,981 copying build/lib/tidytcells/_resources/valid_musmusculus_tr.json -> build/bdist.linux-armv7l/wheel/./tidytcells/_resources 2025-09-27T03:07:37,984 copying build/lib/tidytcells/_resources/__init__.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_resources 2025-09-27T03:07:37,985 copying build/lib/tidytcells/_resources/homosapiens_ig_synonyms.json -> build/bdist.linux-armv7l/wheel/./tidytcells/_resources 2025-09-27T03:07:37,987 copying build/lib/tidytcells/_resources/homosapiens_ig_aa_sequences.json -> build/bdist.linux-armv7l/wheel/./tidytcells/_resources 2025-09-27T03:07:37,994 copying build/lib/tidytcells/_resources/valid_homosapiens_mh.json -> build/bdist.linux-armv7l/wheel/./tidytcells/_resources 2025-09-27T03:07:38,030 copying build/lib/tidytcells/_resources/homosapiens_mh_synonyms.json -> build/bdist.linux-armv7l/wheel/./tidytcells/_resources 2025-09-27T03:07:38,032 copying build/lib/tidytcells/_resources/homosapiens_tr_aa_sequences.json -> build/bdist.linux-armv7l/wheel/./tidytcells/_resources 2025-09-27T03:07:38,035 copying build/lib/tidytcells/_resources/valid_musmusculus_mh.json -> build/bdist.linux-armv7l/wheel/./tidytcells/_resources 2025-09-27T03:07:38,037 copying build/lib/tidytcells/_resources/valid_homosapiens_ig.json -> build/bdist.linux-armv7l/wheel/./tidytcells/_resources 2025-09-27T03:07:38,040 copying build/lib/tidytcells/_resources/homosapiens_tr_synonyms.json -> build/bdist.linux-armv7l/wheel/./tidytcells/_resources 2025-09-27T03:07:38,043 creating build/bdist.linux-armv7l/wheel/tidytcells/_utils 2025-09-27T03:07:38,044 copying build/lib/tidytcells/_utils/string_cleaning.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_utils 2025-09-27T03:07:38,045 copying build/lib/tidytcells/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_utils 2025-09-27T03:07:38,047 copying build/lib/tidytcells/_utils/warnings.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_utils 2025-09-27T03:07:38,049 copying build/lib/tidytcells/_utils/conserved_aa_lookup.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_utils 2025-09-27T03:07:38,051 copying build/lib/tidytcells/_utils/parameter.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_utils 2025-09-27T03:07:38,053 creating build/bdist.linux-armv7l/wheel/tidytcells/mh 2025-09-27T03:07:38,055 copying build/lib/tidytcells/mh/__init__.py -> build/bdist.linux-armv7l/wheel/./tidytcells/mh 2025-09-27T03:07:38,056 copying build/lib/tidytcells/mh/_standardize.py -> build/bdist.linux-armv7l/wheel/./tidytcells/mh 2025-09-27T03:07:38,059 copying build/lib/tidytcells/mh/_get_class.py -> build/bdist.linux-armv7l/wheel/./tidytcells/mh 2025-09-27T03:07:38,061 copying build/lib/tidytcells/mh/_query.py -> build/bdist.linux-armv7l/wheel/./tidytcells/mh 2025-09-27T03:07:38,063 copying build/lib/tidytcells/mh/_get_chain.py -> build/bdist.linux-armv7l/wheel/./tidytcells/mh 2025-09-27T03:07:38,066 creating build/bdist.linux-armv7l/wheel/tidytcells/_standardized_gene_symbol 2025-09-27T03:07:38,067 copying build/lib/tidytcells/_standardized_gene_symbol/__init__.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_standardized_gene_symbol 2025-09-27T03:07:38,069 copying build/lib/tidytcells/_standardized_gene_symbol/standardized_ig_symbol.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_standardized_gene_symbol 2025-09-27T03:07:38,071 copying build/lib/tidytcells/_standardized_gene_symbol/standardized_tr_symbol.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_standardized_gene_symbol 2025-09-27T03:07:38,073 copying build/lib/tidytcells/_standardized_gene_symbol/standardized_mus_musculus_tr_symbol.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_standardized_gene_symbol 2025-09-27T03:07:38,074 copying build/lib/tidytcells/_standardized_gene_symbol/standardized_gene_symbol.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_standardized_gene_symbol 2025-09-27T03:07:38,076 copying build/lib/tidytcells/_standardized_gene_symbol/standardized_homo_sapiens_ig_symbol.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_standardized_gene_symbol 2025-09-27T03:07:38,078 copying build/lib/tidytcells/_standardized_gene_symbol/standardized_mus_musculus_mh_symbol.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_standardized_gene_symbol 2025-09-27T03:07:38,080 copying build/lib/tidytcells/_standardized_gene_symbol/standardized_homo_sapiens_tr_symbol.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_standardized_gene_symbol 2025-09-27T03:07:38,081 copying build/lib/tidytcells/_standardized_gene_symbol/standardized_hla_symbol.py -> build/bdist.linux-armv7l/wheel/./tidytcells/_standardized_gene_symbol 2025-09-27T03:07:38,084 creating build/bdist.linux-armv7l/wheel/tidytcells/tr 2025-09-27T03:07:38,085 copying build/lib/tidytcells/tr/__init__.py -> build/bdist.linux-armv7l/wheel/./tidytcells/tr 2025-09-27T03:07:38,086 copying build/lib/tidytcells/tr/_standardize.py -> build/bdist.linux-armv7l/wheel/./tidytcells/tr 2025-09-27T03:07:38,089 copying build/lib/tidytcells/tr/_query.py -> build/bdist.linux-armv7l/wheel/./tidytcells/tr 2025-09-27T03:07:38,091 copying build/lib/tidytcells/tr/_get_aa_sequence.py -> build/bdist.linux-armv7l/wheel/./tidytcells/tr 2025-09-27T03:07:38,093 creating build/bdist.linux-armv7l/wheel/tidytcells/junction 2025-09-27T03:07:38,094 copying build/lib/tidytcells/junction/__init__.py -> build/bdist.linux-armv7l/wheel/./tidytcells/junction 2025-09-27T03:07:38,095 copying build/lib/tidytcells/junction/_standardize.py -> build/bdist.linux-armv7l/wheel/./tidytcells/junction 2025-09-27T03:07:38,098 creating build/bdist.linux-armv7l/wheel/tidytcells/ig 2025-09-27T03:07:38,099 copying build/lib/tidytcells/ig/__init__.py -> build/bdist.linux-armv7l/wheel/./tidytcells/ig 2025-09-27T03:07:38,101 copying build/lib/tidytcells/ig/_standardize.py -> build/bdist.linux-armv7l/wheel/./tidytcells/ig 2025-09-27T03:07:38,103 copying build/lib/tidytcells/ig/_query.py -> build/bdist.linux-armv7l/wheel/./tidytcells/ig 2025-09-27T03:07:38,105 copying build/lib/tidytcells/ig/_get_aa_sequence.py -> build/bdist.linux-armv7l/wheel/./tidytcells/ig 2025-09-27T03:07:38,107 running install_egg_info 2025-09-27T03:07:38,113 Copying src/tidytcells.egg-info to build/bdist.linux-armv7l/wheel/./tidytcells-2.2.0-py3.11.egg-info 2025-09-27T03:07:38,122 running install_scripts 2025-09-27T03:07:38,131 creating build/bdist.linux-armv7l/wheel/tidytcells-2.2.0.dist-info/WHEEL 2025-09-27T03:07:38,134 creating '/tmp/pip-wheel-2pztouzv/.tmp-6paf5c9j/tidytcells-2.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-27T03:07:38,136 adding 'tidytcells/__init__.py' 2025-09-27T03:07:38,138 adding 'tidytcells/_query_engine/__init__.py' 2025-09-27T03:07:38,139 adding 'tidytcells/_query_engine/hla_query_engine.py' 2025-09-27T03:07:38,140 adding 'tidytcells/_query_engine/homo_sapiens_ig_query_engine.py' 2025-09-27T03:07:38,141 adding 'tidytcells/_query_engine/homo_sapiens_tr_query_engine.py' 2025-09-27T03:07:38,143 adding 'tidytcells/_query_engine/mus_musculus_mh_query_engine.py' 2025-09-27T03:07:38,144 adding 'tidytcells/_query_engine/mus_musculus_tr_query_engine.py' 2025-09-27T03:07:38,145 adding 'tidytcells/_query_engine/query_engine.py' 2025-09-27T03:07:38,146 adding 'tidytcells/_query_engine/tr_query_engine.py' 2025-09-27T03:07:38,148 adding 'tidytcells/_resources/__init__.py' 2025-09-27T03:07:38,159 adding 'tidytcells/_resources/homosapiens_ig_aa_sequences.json' 2025-09-27T03:07:38,162 adding 'tidytcells/_resources/homosapiens_ig_synonyms.json' 2025-09-27T03:07:38,163 adding 'tidytcells/_resources/homosapiens_mh_synonyms.json' 2025-09-27T03:07:38,169 adding 'tidytcells/_resources/homosapiens_tr_aa_sequences.json' 2025-09-27T03:07:38,171 adding 'tidytcells/_resources/homosapiens_tr_synonyms.json' 2025-09-27T03:07:38,172 adding 'tidytcells/_resources/musmusculus_mh_synonyms.json' 2025-09-27T03:07:38,179 adding 'tidytcells/_resources/musmusculus_tr_aa_sequences.json' 2025-09-27T03:07:38,183 adding 'tidytcells/_resources/valid_homosapiens_ig.json' 2025-09-27T03:07:38,213 adding 'tidytcells/_resources/valid_homosapiens_mh.json' 2025-09-27T03:07:38,219 adding 'tidytcells/_resources/valid_homosapiens_tr.json' 2025-09-27T03:07:38,220 adding 'tidytcells/_resources/valid_musmusculus_mh.json' 2025-09-27T03:07:38,222 adding 'tidytcells/_resources/valid_musmusculus_tr.json' 2025-09-27T03:07:38,224 adding 'tidytcells/_standardized_gene_symbol/__init__.py' 2025-09-27T03:07:38,225 adding 'tidytcells/_standardized_gene_symbol/standardized_gene_symbol.py' 2025-09-27T03:07:38,227 adding 'tidytcells/_standardized_gene_symbol/standardized_hla_symbol.py' 2025-09-27T03:07:38,228 adding 'tidytcells/_standardized_gene_symbol/standardized_homo_sapiens_ig_symbol.py' 2025-09-27T03:07:38,229 adding 'tidytcells/_standardized_gene_symbol/standardized_homo_sapiens_tr_symbol.py' 2025-09-27T03:07:38,230 adding 'tidytcells/_standardized_gene_symbol/standardized_ig_symbol.py' 2025-09-27T03:07:38,232 adding 'tidytcells/_standardized_gene_symbol/standardized_mus_musculus_mh_symbol.py' 2025-09-27T03:07:38,233 adding 'tidytcells/_standardized_gene_symbol/standardized_mus_musculus_tr_symbol.py' 2025-09-27T03:07:38,234 adding 'tidytcells/_standardized_gene_symbol/standardized_tr_symbol.py' 2025-09-27T03:07:38,236 adding 'tidytcells/_utils/__init__.py' 2025-09-27T03:07:38,237 adding 'tidytcells/_utils/conserved_aa_lookup.py' 2025-09-27T03:07:38,239 adding 'tidytcells/_utils/parameter.py' 2025-09-27T03:07:38,240 adding 'tidytcells/_utils/string_cleaning.py' 2025-09-27T03:07:38,241 adding 'tidytcells/_utils/warnings.py' 2025-09-27T03:07:38,243 adding 'tidytcells/aa/__init__.py' 2025-09-27T03:07:38,244 adding 'tidytcells/aa/_standardize.py' 2025-09-27T03:07:38,246 adding 'tidytcells/ig/__init__.py' 2025-09-27T03:07:38,247 adding 'tidytcells/ig/_get_aa_sequence.py' 2025-09-27T03:07:38,248 adding 'tidytcells/ig/_query.py' 2025-09-27T03:07:38,250 adding 'tidytcells/ig/_standardize.py' 2025-09-27T03:07:38,252 adding 'tidytcells/junction/__init__.py' 2025-09-27T03:07:38,254 adding 'tidytcells/junction/_standardize.py' 2025-09-27T03:07:38,256 adding 'tidytcells/mh/__init__.py' 2025-09-27T03:07:38,257 adding 'tidytcells/mh/_get_chain.py' 2025-09-27T03:07:38,258 adding 'tidytcells/mh/_get_class.py' 2025-09-27T03:07:38,260 adding 'tidytcells/mh/_query.py' 2025-09-27T03:07:38,261 adding 'tidytcells/mh/_standardize.py' 2025-09-27T03:07:38,263 adding 'tidytcells/tr/__init__.py' 2025-09-27T03:07:38,264 adding 'tidytcells/tr/_get_aa_sequence.py' 2025-09-27T03:07:38,266 adding 'tidytcells/tr/_query.py' 2025-09-27T03:07:38,268 adding 'tidytcells/tr/_standardize.py' 2025-09-27T03:07:38,270 adding 'tidytcells-2.2.0.dist-info/licenses/LICENSE.txt' 2025-09-27T03:07:38,271 adding 'tidytcells-2.2.0.dist-info/METADATA' 2025-09-27T03:07:38,272 adding 'tidytcells-2.2.0.dist-info/WHEEL' 2025-09-27T03:07:38,273 adding 'tidytcells-2.2.0.dist-info/top_level.txt' 2025-09-27T03:07:38,275 adding 'tidytcells-2.2.0.dist-info/RECORD' 2025-09-27T03:07:38,278 removing build/bdist.linux-armv7l/wheel 2025-09-27T03:07:38,391 Building wheel for tidytcells (pyproject.toml): finished with status 'done' 2025-09-27T03:07:38,398 Created wheel for tidytcells: filename=tidytcells-2.2.0-py3-none-any.whl size=124518 sha256=b1dc043bbdb3d7204ffb886dd553b0061112ee8f0944189d8a705c8f9d59eaab 2025-09-27T03:07:38,399 Stored in directory: /tmp/pip-ephem-wheel-cache-ajzzn7gc/wheels/b1/7a/90/3e17ae31c6762b8c86201f97f721959aa5adf1ce994938576f 2025-09-27T03:07:38,411 Successfully built tidytcells 2025-09-27T03:07:38,417 Removed build tracker: '/tmp/pip-build-tracker-uzyx037c'