2025-09-30T03:45:48,021 Created temporary directory: /tmp/pip-ephem-wheel-cache-4luxxwfs 2025-09-30T03:45:48,023 Created temporary directory: /tmp/pip-build-tracker-ob1lweme 2025-09-30T03:45:48,023 Initialized build tracking at /tmp/pip-build-tracker-ob1lweme 2025-09-30T03:45:48,024 Created build tracker: /tmp/pip-build-tracker-ob1lweme 2025-09-30T03:45:48,024 Entered build tracker: /tmp/pip-build-tracker-ob1lweme 2025-09-30T03:45:48,025 Created temporary directory: /tmp/pip-wheel-2qxx61r7 2025-09-30T03:45:48,028 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-09-30T03:45:48,030 Created temporary directory: /tmp/pip-ephem-wheel-cache-3x7w72np 2025-09-30T03:45:48,052 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-30T03:45:48,055 2 location(s) to search for versions of boltznet: 2025-09-30T03:45:48,055 * https://pypi.org/simple/boltznet/ 2025-09-30T03:45:48,055 * https://www.piwheels.org/simple/boltznet/ 2025-09-30T03:45:48,056 Fetching project page and analyzing links: https://pypi.org/simple/boltznet/ 2025-09-30T03:45:48,057 Getting page https://pypi.org/simple/boltznet/ 2025-09-30T03:45:48,058 Found index url https://pypi.org/simple 2025-09-30T03:45:48,195 Fetched page https://pypi.org/simple/boltznet/ as application/vnd.pypi.simple.v1+json 2025-09-30T03:45:48,197 Skipping link: No binaries permitted for boltznet: https://files.pythonhosted.org/packages/9c/1b/eb93bcd69a958e83be350a877bd44fa4dc122552d40224d45dae237160a0/boltznet-0.3.0-py3-none-any.whl (from https://pypi.org/simple/boltznet/) (requires-python:>=3.9) 2025-09-30T03:45:48,198 Found link https://files.pythonhosted.org/packages/62/fd/baec0767ba612436aa4a90f75b82d7303e86008115d310f839c96382753f/boltznet-0.3.0.tar.gz (from https://pypi.org/simple/boltznet/) (requires-python:>=3.9), version: 0.3.0 2025-09-30T03:45:48,199 Skipping link: No binaries permitted for boltznet: https://files.pythonhosted.org/packages/d8/b0/ea3218f2d6358a467de017402d3692b94b2aaff343f8a4066653e24f6d6f/boltznet-0.3.1-py3-none-any.whl (from https://pypi.org/simple/boltznet/) (requires-python:>=3.9) 2025-09-30T03:45:48,199 Found link https://files.pythonhosted.org/packages/a7/8d/bed73a9baabcac2d8bb3ed42819d664f65382f85c6a90cc0e31eb1da7575/boltznet-0.3.1.tar.gz (from https://pypi.org/simple/boltznet/) (requires-python:>=3.9), version: 0.3.1 2025-09-30T03:45:48,200 Fetching project page and analyzing links: https://www.piwheels.org/simple/boltznet/ 2025-09-30T03:45:48,201 Getting page https://www.piwheels.org/simple/boltznet/ 2025-09-30T03:45:48,202 Found index url https://www.piwheels.org/simple 2025-09-30T03:45:48,363 Fetched page https://www.piwheels.org/simple/boltznet/ as text/html 2025-09-30T03:45:48,365 Skipping link: No binaries permitted for boltznet: https://www.piwheels.org/simple/boltznet/boltznet-0.3.0-py3-none-any.whl#sha256=790a8263c7fcd166cb320bf5cf113937b2f82f00906b24ea19d054a7ac98cb3b (from https://www.piwheels.org/simple/boltznet/) (requires-python:>=3.9) 2025-09-30T03:45:48,365 Skipping link: not a file: https://www.piwheels.org/simple/boltznet/ 2025-09-30T03:45:48,366 Skipping link: not a file: https://pypi.org/simple/boltznet/ 2025-09-30T03:45:48,385 Given no hashes to check 1 links for project 'boltznet': discarding no candidates 2025-09-30T03:45:48,403 Collecting boltznet==0.3.1 2025-09-30T03:45:48,405 Created temporary directory: /tmp/pip-unpack-v2n2jc1w 2025-09-30T03:45:48,616 Downloading boltznet-0.3.1.tar.gz (220 kB) 2025-09-30T03:45:48,777 Added boltznet==0.3.1 from https://files.pythonhosted.org/packages/a7/8d/bed73a9baabcac2d8bb3ed42819d664f65382f85c6a90cc0e31eb1da7575/boltznet-0.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-ob1lweme' 2025-09-30T03:45:48,783 Created temporary directory: /tmp/pip-build-env-88tbl0vh 2025-09-30T03:45:48,787 Installing build dependencies: started 2025-09-30T03:45:48,788 Running command pip subprocess to install build dependencies 2025-09-30T03:45:49,940 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-09-30T03:45:50,513 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-09-30T03:45:50,535 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-09-30T03:45:52,287 Collecting setuptools>=68 2025-09-30T03:45:52,380 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-09-30T03:45:52,652 Collecting wheel 2025-09-30T03:45:52,671 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2025-09-30T03:45:55,730 Installing collected packages: wheel, setuptools 2025-09-30T03:45:55,967 Creating /tmp/pip-build-env-88tbl0vh/overlay/local/bin 2025-09-30T03:45:55,969 changing mode of /tmp/pip-build-env-88tbl0vh/overlay/local/bin/wheel to 755 2025-09-30T03:45:59,647 Successfully installed setuptools-80.9.0 wheel-0.45.1 2025-09-30T03:45:59,922 Installing build dependencies: finished with status 'done' 2025-09-30T03:45:59,927 Getting requirements to build wheel: started 2025-09-30T03:45:59,929 Running command Getting requirements to build wheel 2025-09-30T03:46:00,607 running egg_info 2025-09-30T03:46:00,614 writing src/boltznet.egg-info/PKG-INFO 2025-09-30T03:46:00,617 writing dependency_links to src/boltznet.egg-info/dependency_links.txt 2025-09-30T03:46:00,620 writing entry points to src/boltznet.egg-info/entry_points.txt 2025-09-30T03:46:00,622 writing requirements to src/boltznet.egg-info/requires.txt 2025-09-30T03:46:00,623 writing top-level names to src/boltznet.egg-info/top_level.txt 2025-09-30T03:46:00,648 reading manifest file 'src/boltznet.egg-info/SOURCES.txt' 2025-09-30T03:46:00,652 adding license file 'LICENSE' 2025-09-30T03:46:00,655 writing manifest file 'src/boltznet.egg-info/SOURCES.txt' 2025-09-30T03:46:00,753 Getting requirements to build wheel: finished with status 'done' 2025-09-30T03:46:00,756 Created temporary directory: /tmp/pip-modern-metadata-0az96j9y 2025-09-30T03:46:00,759 Preparing metadata (pyproject.toml): started 2025-09-30T03:46:00,760 Running command Preparing metadata (pyproject.toml) 2025-09-30T03:46:01,409 running dist_info 2025-09-30T03:46:01,421 creating /tmp/pip-modern-metadata-0az96j9y/boltznet.egg-info 2025-09-30T03:46:01,422 writing /tmp/pip-modern-metadata-0az96j9y/boltznet.egg-info/PKG-INFO 2025-09-30T03:46:01,426 writing dependency_links to /tmp/pip-modern-metadata-0az96j9y/boltznet.egg-info/dependency_links.txt 2025-09-30T03:46:01,427 writing entry points to /tmp/pip-modern-metadata-0az96j9y/boltznet.egg-info/entry_points.txt 2025-09-30T03:46:01,429 writing requirements to /tmp/pip-modern-metadata-0az96j9y/boltznet.egg-info/requires.txt 2025-09-30T03:46:01,430 writing top-level names to /tmp/pip-modern-metadata-0az96j9y/boltznet.egg-info/top_level.txt 2025-09-30T03:46:01,432 writing manifest file '/tmp/pip-modern-metadata-0az96j9y/boltznet.egg-info/SOURCES.txt' 2025-09-30T03:46:01,454 reading manifest file '/tmp/pip-modern-metadata-0az96j9y/boltznet.egg-info/SOURCES.txt' 2025-09-30T03:46:01,456 adding license file 'LICENSE' 2025-09-30T03:46:01,459 writing manifest file '/tmp/pip-modern-metadata-0az96j9y/boltznet.egg-info/SOURCES.txt' 2025-09-30T03:46:01,460 creating '/tmp/pip-modern-metadata-0az96j9y/boltznet-0.3.1.dist-info' 2025-09-30T03:46:01,585 Preparing metadata (pyproject.toml): finished with status 'done' 2025-09-30T03:46:01,590 Source in /tmp/pip-wheel-2qxx61r7/boltznet_bc4da939c46546f2b13bddcc7f4fe871 has version 0.3.1, which satisfies requirement boltznet==0.3.1 from https://files.pythonhosted.org/packages/a7/8d/bed73a9baabcac2d8bb3ed42819d664f65382f85c6a90cc0e31eb1da7575/boltznet-0.3.1.tar.gz 2025-09-30T03:46:01,591 Removed boltznet==0.3.1 from https://files.pythonhosted.org/packages/a7/8d/bed73a9baabcac2d8bb3ed42819d664f65382f85c6a90cc0e31eb1da7575/boltznet-0.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-ob1lweme' 2025-09-30T03:46:01,596 Created temporary directory: /tmp/pip-unpack-wc_tu136 2025-09-30T03:46:01,596 Building wheels for collected packages: boltznet 2025-09-30T03:46:01,601 Created temporary directory: /tmp/pip-wheel-9if7zori 2025-09-30T03:46:01,601 Destination directory: /tmp/pip-wheel-9if7zori 2025-09-30T03:46:01,603 Building wheel for boltznet (pyproject.toml): started 2025-09-30T03:46:01,604 Running command Building wheel for boltznet (pyproject.toml) 2025-09-30T03:46:02,227 running bdist_wheel 2025-09-30T03:46:02,248 running build 2025-09-30T03:46:02,249 running build_py 2025-09-30T03:46:02,255 creating build/lib/boltznet 2025-09-30T03:46:02,257 copying src/boltznet/__init__.py -> build/lib/boltznet 2025-09-30T03:46:02,259 copying src/boltznet/test_module.py -> build/lib/boltznet 2025-09-30T03:46:02,261 copying src/boltznet/selftest.py -> build/lib/boltznet 2025-09-30T03:46:02,263 copying src/boltznet/boltznet_tf.py -> build/lib/boltznet 2025-09-30T03:46:02,266 creating build/lib/boltznet/_internal 2025-09-30T03:46:02,267 copying src/boltznet/_internal/model_predict.py -> build/lib/boltznet/_internal 2025-09-30T03:46:02,272 copying src/boltznet/_internal/util.py -> build/lib/boltznet/_internal 2025-09-30T03:46:02,274 copying src/boltznet/_internal/sequence.py -> build/lib/boltznet/_internal 2025-09-30T03:46:02,277 copying src/boltznet/_internal/factory.py -> build/lib/boltznet/_internal 2025-09-30T03:46:02,280 copying src/boltznet/_internal/model_create.py -> build/lib/boltznet/_internal 2025-09-30T03:46:02,283 copying src/boltznet/_internal/model_disect.py -> build/lib/boltznet/_internal 2025-09-30T03:46:02,287 copying src/boltznet/_internal/model_predict_models.py -> build/lib/boltznet/_internal 2025-09-30T03:46:02,289 copying src/boltznet/_internal/coverage.py -> build/lib/boltznet/_internal 2025-09-30T03:46:02,291 copying src/boltznet/_internal/fileDataType.py -> build/lib/boltznet/_internal 2025-09-30T03:46:02,294 copying src/boltznet/_internal/browser_util.py -> build/lib/boltznet/_internal 2025-09-30T03:46:02,297 copying src/boltznet/_internal/CONFIG.py -> build/lib/boltznet/_internal 2025-09-30T03:46:02,299 copying src/boltznet/_internal/browser.py -> build/lib/boltznet/_internal 2025-09-30T03:46:02,301 copying src/boltznet/_internal/genomes.py -> build/lib/boltznet/_internal 2025-09-30T03:46:02,304 copying src/boltznet/_internal/model_predict_create.py -> build/lib/boltznet/_internal 2025-09-30T03:46:02,306 copying src/boltznet/_internal/aln.py -> build/lib/boltznet/_internal 2025-09-30T03:46:02,309 copying src/boltznet/_internal/base_data_type.py -> build/lib/boltznet/_internal 2025-09-30T03:46:02,311 copying src/boltznet/_internal/tf_util.py -> build/lib/boltznet/_internal 2025-09-30T03:46:02,316 creating build/lib/boltznet/testdata 2025-09-30T03:46:02,317 copying src/boltznet/testdata/__init__.py -> build/lib/boltznet/testdata 2025-09-30T03:46:02,318 running egg_info 2025-09-30T03:46:02,330 writing src/boltznet.egg-info/PKG-INFO 2025-09-30T03:46:02,333 writing dependency_links to src/boltznet.egg-info/dependency_links.txt 2025-09-30T03:46:02,334 writing entry points to src/boltznet.egg-info/entry_points.txt 2025-09-30T03:46:02,336 writing requirements to src/boltznet.egg-info/requires.txt 2025-09-30T03:46:02,337 writing top-level names to src/boltznet.egg-info/top_level.txt 2025-09-30T03:46:02,349 reading manifest file 'src/boltznet.egg-info/SOURCES.txt' 2025-09-30T03:46:02,353 adding license file 'LICENSE' 2025-09-30T03:46:02,356 writing manifest file 'src/boltznet.egg-info/SOURCES.txt' 2025-09-30T03:46:02,361 copying src/boltznet/testdata/ecoli.gff -> build/lib/boltznet/testdata 2025-09-30T03:46:02,370 copying src/boltznet/testdata/promoters.fa -> build/lib/boltznet/testdata 2025-09-30T03:46:02,387 installing to build/bdist.linux-armv7l/wheel 2025-09-30T03:46:02,388 running install 2025-09-30T03:46:02,411 running install_lib 2025-09-30T03:46:02,417 creating build/bdist.linux-armv7l/wheel 2025-09-30T03:46:02,419 creating build/bdist.linux-armv7l/wheel/boltznet 2025-09-30T03:46:02,420 copying build/lib/boltznet/__init__.py -> build/bdist.linux-armv7l/wheel/./boltznet 2025-09-30T03:46:02,422 copying build/lib/boltznet/test_module.py -> build/bdist.linux-armv7l/wheel/./boltznet 2025-09-30T03:46:02,424 creating build/bdist.linux-armv7l/wheel/boltznet/_internal 2025-09-30T03:46:02,425 copying build/lib/boltznet/_internal/model_predict.py -> build/bdist.linux-armv7l/wheel/./boltznet/_internal 2025-09-30T03:46:02,430 copying build/lib/boltznet/_internal/util.py -> build/bdist.linux-armv7l/wheel/./boltznet/_internal 2025-09-30T03:46:02,434 copying build/lib/boltznet/_internal/sequence.py -> build/bdist.linux-armv7l/wheel/./boltznet/_internal 2025-09-30T03:46:02,436 copying build/lib/boltznet/_internal/factory.py -> build/bdist.linux-armv7l/wheel/./boltznet/_internal 2025-09-30T03:46:02,438 copying build/lib/boltznet/_internal/model_create.py -> build/bdist.linux-armv7l/wheel/./boltznet/_internal 2025-09-30T03:46:02,442 copying build/lib/boltznet/_internal/model_disect.py -> build/bdist.linux-armv7l/wheel/./boltznet/_internal 2025-09-30T03:46:02,445 copying build/lib/boltznet/_internal/model_predict_models.py -> build/bdist.linux-armv7l/wheel/./boltznet/_internal 2025-09-30T03:46:02,447 copying build/lib/boltznet/_internal/coverage.py -> build/bdist.linux-armv7l/wheel/./boltznet/_internal 2025-09-30T03:46:02,449 copying build/lib/boltznet/_internal/fileDataType.py -> build/bdist.linux-armv7l/wheel/./boltznet/_internal 2025-09-30T03:46:02,453 copying build/lib/boltznet/_internal/browser_util.py -> build/bdist.linux-armv7l/wheel/./boltznet/_internal 2025-09-30T03:46:02,456 copying build/lib/boltznet/_internal/CONFIG.py -> build/bdist.linux-armv7l/wheel/./boltznet/_internal 2025-09-30T03:46:02,458 copying build/lib/boltznet/_internal/browser.py -> build/bdist.linux-armv7l/wheel/./boltznet/_internal 2025-09-30T03:46:02,461 copying build/lib/boltznet/_internal/genomes.py -> build/bdist.linux-armv7l/wheel/./boltznet/_internal 2025-09-30T03:46:02,463 copying build/lib/boltznet/_internal/model_predict_create.py -> build/bdist.linux-armv7l/wheel/./boltznet/_internal 2025-09-30T03:46:02,465 copying build/lib/boltznet/_internal/aln.py -> build/bdist.linux-armv7l/wheel/./boltznet/_internal 2025-09-30T03:46:02,468 copying build/lib/boltznet/_internal/base_data_type.py -> build/bdist.linux-armv7l/wheel/./boltznet/_internal 2025-09-30T03:46:02,470 copying build/lib/boltznet/_internal/tf_util.py -> build/bdist.linux-armv7l/wheel/./boltznet/_internal 2025-09-30T03:46:02,473 creating build/bdist.linux-armv7l/wheel/boltznet/testdata 2025-09-30T03:46:02,474 copying build/lib/boltznet/testdata/__init__.py -> build/bdist.linux-armv7l/wheel/./boltznet/testdata 2025-09-30T03:46:02,476 copying build/lib/boltznet/testdata/ecoli.gff -> build/bdist.linux-armv7l/wheel/./boltznet/testdata 2025-09-30T03:46:02,485 copying build/lib/boltznet/testdata/promoters.fa -> build/bdist.linux-armv7l/wheel/./boltznet/testdata 2025-09-30T03:46:02,488 copying build/lib/boltznet/selftest.py -> build/bdist.linux-armv7l/wheel/./boltznet 2025-09-30T03:46:02,490 copying build/lib/boltznet/boltznet_tf.py -> build/bdist.linux-armv7l/wheel/./boltznet 2025-09-30T03:46:02,492 running install_egg_info 2025-09-30T03:46:02,497 Copying src/boltznet.egg-info to build/bdist.linux-armv7l/wheel/./boltznet-0.3.1-py3.11.egg-info 2025-09-30T03:46:02,508 running install_scripts 2025-09-30T03:46:02,519 creating build/bdist.linux-armv7l/wheel/boltznet-0.3.1.dist-info/WHEEL 2025-09-30T03:46:02,522 creating '/tmp/pip-wheel-9if7zori/.tmp-4mz51nyx/boltznet-0.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-09-30T03:46:02,524 adding 'boltznet/__init__.py' 2025-09-30T03:46:02,526 adding 'boltznet/boltznet_tf.py' 2025-09-30T03:46:02,528 adding 'boltznet/selftest.py' 2025-09-30T03:46:02,529 adding 'boltznet/test_module.py' 2025-09-30T03:46:02,531 adding 'boltznet/_internal/CONFIG.py' 2025-09-30T03:46:02,535 adding 'boltznet/_internal/aln.py' 2025-09-30T03:46:02,537 adding 'boltznet/_internal/base_data_type.py' 2025-09-30T03:46:02,539 adding 'boltznet/_internal/browser.py' 2025-09-30T03:46:02,541 adding 'boltznet/_internal/browser_util.py' 2025-09-30T03:46:02,543 adding 'boltznet/_internal/coverage.py' 2025-09-30T03:46:02,544 adding 'boltznet/_internal/factory.py' 2025-09-30T03:46:02,546 adding 'boltznet/_internal/fileDataType.py' 2025-09-30T03:46:02,547 adding 'boltznet/_internal/genomes.py' 2025-09-30T03:46:02,555 adding 'boltznet/_internal/model_create.py' 2025-09-30T03:46:02,560 adding 'boltznet/_internal/model_disect.py' 2025-09-30T03:46:02,570 adding 'boltznet/_internal/model_predict.py' 2025-09-30T03:46:02,573 adding 'boltznet/_internal/model_predict_create.py' 2025-09-30T03:46:02,574 adding 'boltznet/_internal/model_predict_models.py' 2025-09-30T03:46:02,576 adding 'boltznet/_internal/sequence.py' 2025-09-30T03:46:02,584 adding 'boltznet/_internal/tf_util.py' 2025-09-30T03:46:02,587 adding 'boltznet/_internal/util.py' 2025-09-30T03:46:02,589 adding 'boltznet/testdata/__init__.py' 2025-09-30T03:46:02,629 adding 'boltznet/testdata/ecoli.gff' 2025-09-30T03:46:02,659 adding 'boltznet/testdata/promoters.fa' 2025-09-30T03:46:02,662 adding 'boltznet-0.3.1.dist-info/licenses/LICENSE' 2025-09-30T03:46:02,663 adding 'boltznet-0.3.1.dist-info/METADATA' 2025-09-30T03:46:02,664 adding 'boltznet-0.3.1.dist-info/WHEEL' 2025-09-30T03:46:02,665 adding 'boltznet-0.3.1.dist-info/entry_points.txt' 2025-09-30T03:46:02,666 adding 'boltznet-0.3.1.dist-info/top_level.txt' 2025-09-30T03:46:02,667 adding 'boltznet-0.3.1.dist-info/RECORD' 2025-09-30T03:46:02,671 removing build/bdist.linux-armv7l/wheel 2025-09-30T03:46:02,777 Building wheel for boltznet (pyproject.toml): finished with status 'done' 2025-09-30T03:46:02,787 Created wheel for boltznet: filename=boltznet-0.3.1-py3-none-any.whl size=227535 sha256=858b79350c4c9dd0f15290a87c28da066bbeb662ae4351b4a0ea5e558423f6b1 2025-09-30T03:46:02,788 Stored in directory: /tmp/pip-ephem-wheel-cache-3x7w72np/wheels/87/2d/f1/5a5c7e94cca448758f3633859e3b9fdab565732213ef517843 2025-09-30T03:46:02,799 Successfully built boltznet 2025-09-30T03:46:02,810 Removed build tracker: '/tmp/pip-build-tracker-ob1lweme'