2025-10-01T20:05:08,371 Created temporary directory: /tmp/pip-ephem-wheel-cache-rhb4lt5f
2025-10-01T20:05:08,373 Created temporary directory: /tmp/pip-build-tracker-huz_tsxq
2025-10-01T20:05:08,374 Initialized build tracking at /tmp/pip-build-tracker-huz_tsxq
2025-10-01T20:05:08,374 Created build tracker: /tmp/pip-build-tracker-huz_tsxq
2025-10-01T20:05:08,375 Entered build tracker: /tmp/pip-build-tracker-huz_tsxq
2025-10-01T20:05:08,376 Created temporary directory: /tmp/pip-wheel-fjrtxu54
2025-10-01T20:05:08,379 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-01T20:05:08,381 Created temporary directory: /tmp/pip-ephem-wheel-cache-hkpqsnxd
2025-10-01T20:05:08,402 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-01T20:05:08,406 2 location(s) to search for versions of tardis-em-analysis:
2025-10-01T20:05:08,406 * https://pypi.org/simple/tardis-em-analysis/
2025-10-01T20:05:08,406 * https://www.piwheels.org/simple/tardis-em-analysis/
2025-10-01T20:05:08,407 Fetching project page and analyzing links: https://pypi.org/simple/tardis-em-analysis/
2025-10-01T20:05:08,408 Getting page https://pypi.org/simple/tardis-em-analysis/
2025-10-01T20:05:08,409 Found index url https://pypi.org/simple
2025-10-01T20:05:08,623 Fetched page https://pypi.org/simple/tardis-em-analysis/ as application/vnd.pypi.simple.v1+json
2025-10-01T20:05:08,625   Skipping link: No binaries permitted for tardis-em-analysis: https://files.pythonhosted.org/packages/70/c3/8af2a621b457fb5dae10bcc0affbb885d1a1053bcd0e88da83c7bb4170b5/tardis_em_analysis-0.3.20-py3-none-any.whl (from https://pypi.org/simple/tardis-em-analysis/) (requires-python:!=3.12,>=3.10)
2025-10-01T20:05:08,626   Found link https://files.pythonhosted.org/packages/07/b8/c7a948ff0ecc0b031cae2d97aa8e53e83b3b4985d32fd96ef8a7bc512017/tardis_em_analysis-0.3.20.tar.gz (from https://pypi.org/simple/tardis-em-analysis/) (requires-python:!=3.12,>=3.10), version: 0.3.20
2025-10-01T20:05:08,627 Fetching project page and analyzing links: https://www.piwheels.org/simple/tardis-em-analysis/
2025-10-01T20:05:08,628 Getting page https://www.piwheels.org/simple/tardis-em-analysis/
2025-10-01T20:05:08,629 Found index url https://www.piwheels.org/simple
2025-10-01T20:05:08,791 Fetched page https://www.piwheels.org/simple/tardis-em-analysis/ as text/html
2025-10-01T20:05:08,792 Skipping link: not a file: https://www.piwheels.org/simple/tardis-em-analysis/
2025-10-01T20:05:08,793 Skipping link: not a file: https://pypi.org/simple/tardis-em-analysis/
2025-10-01T20:05:08,811 Given no hashes to check 1 links for project 'tardis-em-analysis': discarding no candidates
2025-10-01T20:05:08,829 Collecting tardis-em-analysis==0.3.20
2025-10-01T20:05:08,831   Created temporary directory: /tmp/pip-unpack-92awaozn
2025-10-01T20:05:09,043   Downloading tardis_em_analysis-0.3.20.tar.gz (49 kB)
2025-10-01T20:05:09,142   Added tardis-em-analysis==0.3.20 from https://files.pythonhosted.org/packages/07/b8/c7a948ff0ecc0b031cae2d97aa8e53e83b3b4985d32fd96ef8a7bc512017/tardis_em_analysis-0.3.20.tar.gz to build tracker '/tmp/pip-build-tracker-huz_tsxq'
2025-10-01T20:05:09,147   Created temporary directory: /tmp/pip-build-env-xnuhub9w
2025-10-01T20:05:09,151   Installing build dependencies: started
2025-10-01T20:05:09,153   Running command pip subprocess to install build dependencies
2025-10-01T20:05:10,291   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-10-01T20:05:10,913   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-01T20:05:10,937   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-01T20:05:12,654   Collecting setuptools>42.0
2025-10-01T20:05:12,745     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-10-01T20:05:13,022   Collecting wheel
2025-10-01T20:05:13,041     Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB)
2025-10-01T20:05:16,113   Installing collected packages: wheel, setuptools
2025-10-01T20:05:16,352     Creating /tmp/pip-build-env-xnuhub9w/overlay/local/bin
2025-10-01T20:05:16,354     changing mode of /tmp/pip-build-env-xnuhub9w/overlay/local/bin/wheel to 755
2025-10-01T20:05:20,186   Successfully installed setuptools-80.9.0 wheel-0.45.1
2025-10-01T20:05:20,459   Installing build dependencies: finished with status 'done'
2025-10-01T20:05:20,465   Getting requirements to build wheel: started
2025-10-01T20:05:20,466   Running command Getting requirements to build wheel
2025-10-01T20:05:21,054   /tmp/pip-build-env-xnuhub9w/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-fjrtxu54/tardis-em-analysis_99d0fcbd433c4b509fec1e688791d07e/README.md' cannot be found
2025-10-01T20:05:21,055     return '\n'.join(
2025-10-01T20:05:21,124   running egg_info
2025-10-01T20:05:21,131   writing tardis_em_analysis.egg-info/PKG-INFO
2025-10-01T20:05:21,135   writing dependency_links to tardis_em_analysis.egg-info/dependency_links.txt
2025-10-01T20:05:21,137   writing requirements to tardis_em_analysis.egg-info/requires.txt
2025-10-01T20:05:21,139   writing top-level names to tardis_em_analysis.egg-info/top_level.txt
2025-10-01T20:05:21,171   reading manifest file 'tardis_em_analysis.egg-info/SOURCES.txt'
2025-10-01T20:05:21,175   reading manifest template 'MANIFEST.in'
2025-10-01T20:05:21,176   adding license file 'LICENSE'
2025-10-01T20:05:21,180   writing manifest file 'tardis_em_analysis.egg-info/SOURCES.txt'
2025-10-01T20:05:21,270   Getting requirements to build wheel: finished with status 'done'
2025-10-01T20:05:21,274   Created temporary directory: /tmp/pip-modern-metadata-q38tgx1o
2025-10-01T20:05:21,276   Preparing metadata (pyproject.toml): started
2025-10-01T20:05:21,277   Running command Preparing metadata (pyproject.toml)
2025-10-01T20:05:21,802   /tmp/pip-build-env-xnuhub9w/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-fjrtxu54/tardis-em-analysis_99d0fcbd433c4b509fec1e688791d07e/README.md' cannot be found
2025-10-01T20:05:21,802     return '\n'.join(
2025-10-01T20:05:21,844   running dist_info
2025-10-01T20:05:21,856   creating /tmp/pip-modern-metadata-q38tgx1o/tardis_em_analysis.egg-info
2025-10-01T20:05:21,857   writing /tmp/pip-modern-metadata-q38tgx1o/tardis_em_analysis.egg-info/PKG-INFO
2025-10-01T20:05:21,860   writing dependency_links to /tmp/pip-modern-metadata-q38tgx1o/tardis_em_analysis.egg-info/dependency_links.txt
2025-10-01T20:05:21,862   writing requirements to /tmp/pip-modern-metadata-q38tgx1o/tardis_em_analysis.egg-info/requires.txt
2025-10-01T20:05:21,863   writing top-level names to /tmp/pip-modern-metadata-q38tgx1o/tardis_em_analysis.egg-info/top_level.txt
2025-10-01T20:05:21,865   writing manifest file '/tmp/pip-modern-metadata-q38tgx1o/tardis_em_analysis.egg-info/SOURCES.txt'
2025-10-01T20:05:21,892   reading manifest file '/tmp/pip-modern-metadata-q38tgx1o/tardis_em_analysis.egg-info/SOURCES.txt'
2025-10-01T20:05:21,894   reading manifest template 'MANIFEST.in'
2025-10-01T20:05:21,896   adding license file 'LICENSE'
2025-10-01T20:05:21,899   writing manifest file '/tmp/pip-modern-metadata-q38tgx1o/tardis_em_analysis.egg-info/SOURCES.txt'
2025-10-01T20:05:21,900   creating '/tmp/pip-modern-metadata-q38tgx1o/tardis_em_analysis-0.3.20.dist-info'
2025-10-01T20:05:22,030   Preparing metadata (pyproject.toml): finished with status 'done'
2025-10-01T20:05:22,035   Source in /tmp/pip-wheel-fjrtxu54/tardis-em-analysis_99d0fcbd433c4b509fec1e688791d07e has version 0.3.20, which satisfies requirement tardis-em-analysis==0.3.20 from https://files.pythonhosted.org/packages/07/b8/c7a948ff0ecc0b031cae2d97aa8e53e83b3b4985d32fd96ef8a7bc512017/tardis_em_analysis-0.3.20.tar.gz
2025-10-01T20:05:22,037   Removed tardis-em-analysis==0.3.20 from https://files.pythonhosted.org/packages/07/b8/c7a948ff0ecc0b031cae2d97aa8e53e83b3b4985d32fd96ef8a7bc512017/tardis_em_analysis-0.3.20.tar.gz from build tracker '/tmp/pip-build-tracker-huz_tsxq'
2025-10-01T20:05:22,042 Created temporary directory: /tmp/pip-unpack-4qezl7u_
2025-10-01T20:05:22,043 Building wheels for collected packages: tardis-em-analysis
2025-10-01T20:05:22,048   Created temporary directory: /tmp/pip-wheel-_dmkr0m4
2025-10-01T20:05:22,048   Destination directory: /tmp/pip-wheel-_dmkr0m4
2025-10-01T20:05:22,050   Building wheel for tardis-em-analysis (pyproject.toml): started
2025-10-01T20:05:22,051   Running command Building wheel for tardis-em-analysis (pyproject.toml)
2025-10-01T20:05:22,573   /tmp/pip-build-env-xnuhub9w/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-fjrtxu54/tardis-em-analysis_99d0fcbd433c4b509fec1e688791d07e/README.md' cannot be found
2025-10-01T20:05:22,573     return '\n'.join(
2025-10-01T20:05:22,619   running bdist_wheel
2025-10-01T20:05:22,650   running build
2025-10-01T20:05:22,651   running build_py
2025-10-01T20:05:22,661   creating build/lib/tardis_em_analysis
2025-10-01T20:05:22,663   copying tardis_em_analysis/spatial_graph_utils.py -> build/lib/tardis_em_analysis
2025-10-01T20:05:22,666   copying tardis_em_analysis/geometry_metrics.py -> build/lib/tardis_em_analysis
2025-10-01T20:05:22,669   copying tardis_em_analysis/__init__.py -> build/lib/tardis_em_analysis
2025-10-01T20:05:22,671   copying tardis_em_analysis/analysis.py -> build/lib/tardis_em_analysis
2025-10-01T20:05:22,674   copying tardis_em_analysis/filament_structure.py -> build/lib/tardis_em_analysis
2025-10-01T20:05:22,676   copying tardis_em_analysis/filament_utils.py -> build/lib/tardis_em_analysis
2025-10-01T20:05:22,679   copying tardis_em_analysis/_version.py -> build/lib/tardis_em_analysis
2025-10-01T20:05:22,681   copying tardis_em_analysis/utils.py -> build/lib/tardis_em_analysis
2025-10-01T20:05:22,684   creating build/lib/tardis_em_analysis/mt_classification
2025-10-01T20:05:22,685   copying tardis_em_analysis/mt_classification/mt_classes.py -> build/lib/tardis_em_analysis/mt_classification
2025-10-01T20:05:22,688   copying tardis_em_analysis/mt_classification/__init__.py -> build/lib/tardis_em_analysis/mt_classification
2025-10-01T20:05:22,689   copying tardis_em_analysis/mt_classification/utils.py -> build/lib/tardis_em_analysis/mt_classification
2025-10-01T20:05:22,693   creating build/lib/tardis_em_analysis/stitch_volume
2025-10-01T20:05:22,694   copying tardis_em_analysis/stitch_volume/align_tomograms.py -> build/lib/tardis_em_analysis/stitch_volume
2025-10-01T20:05:22,697   copying tardis_em_analysis/stitch_volume/__init__.py -> build/lib/tardis_em_analysis/stitch_volume
2025-10-01T20:05:22,699   copying tardis_em_analysis/stitch_volume/utils.py -> build/lib/tardis_em_analysis/stitch_volume
2025-10-01T20:05:22,700   running egg_info
2025-10-01T20:05:22,712   writing tardis_em_analysis.egg-info/PKG-INFO
2025-10-01T20:05:22,715   writing dependency_links to tardis_em_analysis.egg-info/dependency_links.txt
2025-10-01T20:05:22,716   writing requirements to tardis_em_analysis.egg-info/requires.txt
2025-10-01T20:05:22,717   writing top-level names to tardis_em_analysis.egg-info/top_level.txt
2025-10-01T20:05:22,731   reading manifest file 'tardis_em_analysis.egg-info/SOURCES.txt'
2025-10-01T20:05:22,734   reading manifest template 'MANIFEST.in'
2025-10-01T20:05:22,735   adding license file 'LICENSE'
2025-10-01T20:05:22,739   writing manifest file 'tardis_em_analysis.egg-info/SOURCES.txt'
2025-10-01T20:05:22,756   installing to build/bdist.linux-armv7l/wheel
2025-10-01T20:05:22,757   running install
2025-10-01T20:05:22,780   running install_lib
2025-10-01T20:05:22,788   creating build/bdist.linux-armv7l/wheel
2025-10-01T20:05:22,791   creating build/bdist.linux-armv7l/wheel/tardis_em_analysis
2025-10-01T20:05:22,792   copying build/lib/tardis_em_analysis/spatial_graph_utils.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis
2025-10-01T20:05:22,795   creating build/bdist.linux-armv7l/wheel/tardis_em_analysis/mt_classification
2025-10-01T20:05:22,796   copying build/lib/tardis_em_analysis/mt_classification/mt_classes.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis/mt_classification
2025-10-01T20:05:22,799   copying build/lib/tardis_em_analysis/mt_classification/__init__.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis/mt_classification
2025-10-01T20:05:22,800   copying build/lib/tardis_em_analysis/mt_classification/utils.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis/mt_classification
2025-10-01T20:05:22,803   copying build/lib/tardis_em_analysis/geometry_metrics.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis
2025-10-01T20:05:22,806   copying build/lib/tardis_em_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis
2025-10-01T20:05:22,808   copying build/lib/tardis_em_analysis/analysis.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis
2025-10-01T20:05:22,811   copying build/lib/tardis_em_analysis/filament_structure.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis
2025-10-01T20:05:22,813   copying build/lib/tardis_em_analysis/filament_utils.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis
2025-10-01T20:05:22,815   copying build/lib/tardis_em_analysis/_version.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis
2025-10-01T20:05:22,817   copying build/lib/tardis_em_analysis/utils.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis
2025-10-01T20:05:22,820   creating build/bdist.linux-armv7l/wheel/tardis_em_analysis/stitch_volume
2025-10-01T20:05:22,821   copying build/lib/tardis_em_analysis/stitch_volume/align_tomograms.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis/stitch_volume
2025-10-01T20:05:22,824   copying build/lib/tardis_em_analysis/stitch_volume/__init__.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis/stitch_volume
2025-10-01T20:05:22,826   copying build/lib/tardis_em_analysis/stitch_volume/utils.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis/stitch_volume
2025-10-01T20:05:22,828   running install_egg_info
2025-10-01T20:05:22,842   Copying tardis_em_analysis.egg-info to build/bdist.linux-armv7l/wheel/./tardis_em_analysis-0.3.20-py3.11.egg-info
2025-10-01T20:05:22,852   running install_scripts
2025-10-01T20:05:22,862   creating build/bdist.linux-armv7l/wheel/tardis_em_analysis-0.3.20.dist-info/WHEEL
2025-10-01T20:05:22,865   creating '/tmp/pip-wheel-_dmkr0m4/.tmp-33zyuldx/tardis_em_analysis-0.3.20-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-10-01T20:05:22,868   adding 'tardis_em_analysis/__init__.py'
2025-10-01T20:05:22,869   adding 'tardis_em_analysis/_version.py'
2025-10-01T20:05:22,872   adding 'tardis_em_analysis/analysis.py'
2025-10-01T20:05:22,873   adding 'tardis_em_analysis/filament_structure.py'
2025-10-01T20:05:22,876   adding 'tardis_em_analysis/filament_utils.py'
2025-10-01T20:05:22,879   adding 'tardis_em_analysis/geometry_metrics.py'
2025-10-01T20:05:22,883   adding 'tardis_em_analysis/spatial_graph_utils.py'
2025-10-01T20:05:22,885   adding 'tardis_em_analysis/utils.py'
2025-10-01T20:05:22,887   adding 'tardis_em_analysis/mt_classification/__init__.py'
2025-10-01T20:05:22,891   adding 'tardis_em_analysis/mt_classification/mt_classes.py'
2025-10-01T20:05:22,894   adding 'tardis_em_analysis/mt_classification/utils.py'
2025-10-01T20:05:22,896   adding 'tardis_em_analysis/stitch_volume/__init__.py'
2025-10-01T20:05:22,900   adding 'tardis_em_analysis/stitch_volume/align_tomograms.py'
2025-10-01T20:05:22,901   adding 'tardis_em_analysis/stitch_volume/utils.py'
2025-10-01T20:05:22,904   adding 'tardis_em_analysis-0.3.20.dist-info/licenses/LICENSE'
2025-10-01T20:05:22,905   adding 'tardis_em_analysis-0.3.20.dist-info/METADATA'
2025-10-01T20:05:22,906   adding 'tardis_em_analysis-0.3.20.dist-info/WHEEL'
2025-10-01T20:05:22,907   adding 'tardis_em_analysis-0.3.20.dist-info/top_level.txt'
2025-10-01T20:05:22,908   adding 'tardis_em_analysis-0.3.20.dist-info/RECORD'
2025-10-01T20:05:22,910   removing build/bdist.linux-armv7l/wheel
2025-10-01T20:05:23,010   Building wheel for tardis-em-analysis (pyproject.toml): finished with status 'done'
2025-10-01T20:05:23,016   Created wheel for tardis-em-analysis: filename=tardis_em_analysis-0.3.20-py3-none-any.whl size=53791 sha256=743f6e965b2a319f1e070a7ccddd6c11c4577abee922192461ff461f0f2f931f
2025-10-01T20:05:23,017   Stored in directory: /tmp/pip-ephem-wheel-cache-hkpqsnxd/wheels/b2/3f/ef/ade5708e630064c677b88e1ca272c62f36570223fae264a9a1
2025-10-01T20:05:23,028 Successfully built tardis-em-analysis
2025-10-01T20:05:23,032 Removed build tracker: '/tmp/pip-build-tracker-huz_tsxq'