2025-10-02T21:26:24,196 Created temporary directory: /tmp/pip-ephem-wheel-cache-o1stimcq 2025-10-02T21:26:24,198 Created temporary directory: /tmp/pip-build-tracker-s6a_apy2 2025-10-02T21:26:24,198 Initialized build tracking at /tmp/pip-build-tracker-s6a_apy2 2025-10-02T21:26:24,199 Created build tracker: /tmp/pip-build-tracker-s6a_apy2 2025-10-02T21:26:24,199 Entered build tracker: /tmp/pip-build-tracker-s6a_apy2 2025-10-02T21:26:24,200 Created temporary directory: /tmp/pip-wheel-v4yr40oy 2025-10-02T21:26:24,203 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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2025-10-02T21:26:24,503 Getting page https://www.piwheels.org/simple/rcsb-workflow/ 2025-10-02T21:26:24,505 Found index url https://www.piwheels.org/simple 2025-10-02T21:26:24,677 Fetched page https://www.piwheels.org/simple/rcsb-workflow/ as text/html 2025-10-02T21:26:24,696 Skipping link: No binaries permitted for rcsb-workflow: https://www.piwheels.org/simple/rcsb-workflow/rcsb_workflow-0.61-py2.py3-none-any.whl#sha256=29829c9ef6cee7f998a6317619a5d9de2e9487506b3dc872f7cf8bd6b758b445 (from https://www.piwheels.org/simple/rcsb-workflow/) 2025-10-02T21:26:24,697 Skipping link: No binaries permitted for rcsb-workflow: https://www.piwheels.org/simple/rcsb-workflow/rcsb_workflow-0.60-py2.py3-none-any.whl#sha256=08055e77169e534584afad6545871070bc9b7ab217fcf616761fb8808dae19c5 (from https://www.piwheels.org/simple/rcsb-workflow/) 2025-10-02T21:26:24,698 Skipping link: No binaries permitted for rcsb-workflow: 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rcsb_workflow-0.62.tar.gz (35 kB) 2025-10-02T21:26:25,095 Added rcsb-workflow==0.62 from https://files.pythonhosted.org/packages/d4/1c/04f58f05afdfa73481ea09bf0e252ba5adaa389737f3be263c0e921cbbf9/rcsb_workflow-0.62.tar.gz to build tracker '/tmp/pip-build-tracker-s6a_apy2' 2025-10-02T21:26:25,096 Running setup.py (path:/tmp/pip-wheel-v4yr40oy/rcsb-workflow_a8cd7a03d44e475aaef3e5c32fe5ec2b/setup.py) egg_info for package rcsb-workflow 2025-10-02T21:26:25,097 Created temporary directory: /tmp/pip-pip-egg-info-kvspfsj7 2025-10-02T21:26:25,098 Preparing metadata (setup.py): started 2025-10-02T21:26:25,099 Running command python setup.py egg_info 2025-10-02T21:26:25,692 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-10-02T21:26:25,692 warnings.warn(msg) 2025-10-02T21:26:25,692 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-10-02T21:26:25,693 warnings.warn(msg) 2025-10-02T21:26:26,002 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-02T21:26:26,003 !! 2025-10-02T21:26:26,004 ******************************************************************************** 2025-10-02T21:26:26,004 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-02T21:26:26,006 License :: OSI Approved :: Apache Software License 2025-10-02T21:26:26,007 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-02T21:26:26,007 ******************************************************************************** 2025-10-02T21:26:26,008 !! 2025-10-02T21:26:26,009 self._finalize_license_expression() 2025-10-02T21:26:26,034 running egg_info 2025-10-02T21:26:26,062 creating /tmp/pip-pip-egg-info-kvspfsj7/rcsb.workflow.egg-info 2025-10-02T21:26:26,063 writing /tmp/pip-pip-egg-info-kvspfsj7/rcsb.workflow.egg-info/PKG-INFO 2025-10-02T21:26:26,069 writing dependency_links to /tmp/pip-pip-egg-info-kvspfsj7/rcsb.workflow.egg-info/dependency_links.txt 2025-10-02T21:26:26,071 writing entry points to /tmp/pip-pip-egg-info-kvspfsj7/rcsb.workflow.egg-info/entry_points.txt 2025-10-02T21:26:26,073 writing requirements to /tmp/pip-pip-egg-info-kvspfsj7/rcsb.workflow.egg-info/requires.txt 2025-10-02T21:26:26,074 writing top-level names to /tmp/pip-pip-egg-info-kvspfsj7/rcsb.workflow.egg-info/top_level.txt 2025-10-02T21:26:26,290 writing manifest file '/tmp/pip-pip-egg-info-kvspfsj7/rcsb.workflow.egg-info/SOURCES.txt' 2025-10-02T21:26:26,392 reading manifest file '/tmp/pip-pip-egg-info-kvspfsj7/rcsb.workflow.egg-info/SOURCES.txt' 2025-10-02T21:26:26,394 reading manifest template 'MANIFEST.in' 2025-10-02T21:26:26,395 adding license file 'LICENSE' 2025-10-02T21:26:26,398 writing manifest file '/tmp/pip-pip-egg-info-kvspfsj7/rcsb.workflow.egg-info/SOURCES.txt' 2025-10-02T21:26:26,503 Preparing metadata (setup.py): finished with status 'done' 2025-10-02T21:26:26,507 Source in /tmp/pip-wheel-v4yr40oy/rcsb-workflow_a8cd7a03d44e475aaef3e5c32fe5ec2b has version 0.62, which satisfies requirement rcsb-workflow==0.62 from https://files.pythonhosted.org/packages/d4/1c/04f58f05afdfa73481ea09bf0e252ba5adaa389737f3be263c0e921cbbf9/rcsb_workflow-0.62.tar.gz 2025-10-02T21:26:26,508 Removed rcsb-workflow==0.62 from https://files.pythonhosted.org/packages/d4/1c/04f58f05afdfa73481ea09bf0e252ba5adaa389737f3be263c0e921cbbf9/rcsb_workflow-0.62.tar.gz from build tracker '/tmp/pip-build-tracker-s6a_apy2' 2025-10-02T21:26:26,513 Created temporary directory: /tmp/pip-unpack-u9lecs11 2025-10-02T21:26:26,513 Building wheels for collected packages: rcsb-workflow 2025-10-02T21:26:26,517 Created temporary directory: /tmp/pip-wheel-_o32pg10 2025-10-02T21:26:26,518 Building wheel for rcsb-workflow (setup.py): started 2025-10-02T21:26:26,519 Destination directory: /tmp/pip-wheel-_o32pg10 2025-10-02T21:26:26,520 Running command python setup.py bdist_wheel 2025-10-02T21:26:27,273 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-10-02T21:26:27,273 warnings.warn(msg) 2025-10-02T21:26:27,274 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-10-02T21:26:27,274 warnings.warn(msg) 2025-10-02T21:26:27,570 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-02T21:26:27,571 !! 2025-10-02T21:26:27,572 ******************************************************************************** 2025-10-02T21:26:27,572 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-02T21:26:27,574 License :: OSI Approved :: Apache Software License 2025-10-02T21:26:27,575 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-02T21:26:27,575 ******************************************************************************** 2025-10-02T21:26:27,576 !! 2025-10-02T21:26:27,577 self._finalize_license_expression() 2025-10-02T21:26:27,577 running bdist_wheel 2025-10-02T21:26:27,655 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:135: SetuptoolsDeprecationWarning: bdist_wheel.universal is deprecated 2025-10-02T21:26:27,655 !! 2025-10-02T21:26:27,656 ******************************************************************************** 2025-10-02T21:26:27,657 With Python 2.7 end-of-life, support for building universal wheels 2025-10-02T21:26:27,658 (i.e., wheels that support both Python 2 and Python 3) 2025-10-02T21:26:27,658 is being obviated. 2025-10-02T21:26:27,659 Please discontinue using this option, or if you still need it, 2025-10-02T21:26:27,659 file an issue with pypa/setuptools describing your use case. 2025-10-02T21:26:27,661 This deprecation is overdue, please update your project and remove deprecated 2025-10-02T21:26:27,661 calls to avoid build errors in the future. 2025-10-02T21:26:27,662 ******************************************************************************** 2025-10-02T21:26:27,662 !! 2025-10-02T21:26:27,663 self.finalize_options() 2025-10-02T21:26:27,713 running build 2025-10-02T21:26:27,714 running build_py 2025-10-02T21:26:27,744 creating build/lib/rcsb 2025-10-02T21:26:27,746 copying rcsb/__init__.py -> build/lib/rcsb 2025-10-02T21:26:27,749 creating build/lib/rcsb/workflow 2025-10-02T21:26:27,750 copying rcsb/workflow/__init__.py -> build/lib/rcsb/workflow 2025-10-02T21:26:27,752 creating build/lib/rcsb/workflow/bcif 2025-10-02T21:26:27,753 copying rcsb/workflow/bcif/__init__.py -> build/lib/rcsb/workflow/bcif 2025-10-02T21:26:27,755 copying rcsb/workflow/bcif/task_functions.py -> build/lib/rcsb/workflow/bcif 2025-10-02T21:26:27,758 creating build/lib/rcsb/workflow/targets 2025-10-02T21:26:27,759 copying rcsb/workflow/targets/__init__.py -> build/lib/rcsb/workflow/targets 2025-10-02T21:26:27,761 copying rcsb/workflow/targets/ProteinTargetSequenceExecutionWorkflow.py -> build/lib/rcsb/workflow/targets 2025-10-02T21:26:27,763 copying rcsb/workflow/targets/ProteinTargetSequenceWorkflow.py -> build/lib/rcsb/workflow/targets 2025-10-02T21:26:27,766 creating build/lib/rcsb/workflow/wuw 2025-10-02T21:26:27,767 copying rcsb/workflow/wuw/PdbCsmImageWorkflow.py -> build/lib/rcsb/workflow/wuw 2025-10-02T21:26:27,770 copying rcsb/workflow/wuw/__init__.py -> build/lib/rcsb/workflow/wuw 2025-10-02T21:26:27,772 copying rcsb/workflow/wuw/BcifWorkflow.py -> build/lib/rcsb/workflow/wuw 2025-10-02T21:26:27,774 copying rcsb/workflow/wuw/WuwUtils.py -> build/lib/rcsb/workflow/wuw 2025-10-02T21:26:27,776 copying rcsb/workflow/wuw/ExDbWorkflow.py -> build/lib/rcsb/workflow/wuw 2025-10-02T21:26:27,779 creating build/lib/rcsb/workflow/cli 2025-10-02T21:26:27,780 copying rcsb/workflow/cli/__init__.py -> build/lib/rcsb/workflow/cli 2025-10-02T21:26:27,782 copying rcsb/workflow/cli/ImgExec.py -> build/lib/rcsb/workflow/cli 2025-10-02T21:26:27,784 copying rcsb/workflow/cli/BcifExec.py -> build/lib/rcsb/workflow/cli 2025-10-02T21:26:27,786 copying rcsb/workflow/cli/ExDbExec.py -> build/lib/rcsb/workflow/cli 2025-10-02T21:26:27,789 creating build/lib/rcsb/workflow/chem 2025-10-02T21:26:27,790 copying rcsb/workflow/chem/__init__.py -> build/lib/rcsb/workflow/chem 2025-10-02T21:26:27,792 copying rcsb/workflow/chem/ChemCompSearchIndexWorkflow.py -> build/lib/rcsb/workflow/chem 2025-10-02T21:26:27,794 copying rcsb/workflow/chem/ChemCompFileWorkflow.py -> build/lib/rcsb/workflow/chem 2025-10-02T21:26:27,796 copying rcsb/workflow/chem/ChemCompImageWorkflow.py -> build/lib/rcsb/workflow/chem 2025-10-02T21:26:27,838 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-10-02T21:26:27,839 !! 2025-10-02T21:26:27,840 ******************************************************************************** 2025-10-02T21:26:27,841 Please avoid running ``setup.py`` directly. 2025-10-02T21:26:27,841 Instead, use pypa/build, pypa/installer or other 2025-10-02T21:26:27,842 standards-based tools. 2025-10-02T21:26:27,843 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-10-02T21:26:27,843 or your builds will no longer be supported. 2025-10-02T21:26:27,845 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-10-02T21:26:27,845 ******************************************************************************** 2025-10-02T21:26:27,846 !! 2025-10-02T21:26:27,847 self.initialize_options() 2025-10-02T21:26:27,868 installing to build/bdist.linux-armv7l/wheel 2025-10-02T21:26:27,869 running install 2025-10-02T21:26:27,893 running install_lib 2025-10-02T21:26:27,922 creating build/bdist.linux-armv7l/wheel 2025-10-02T21:26:27,925 creating build/bdist.linux-armv7l/wheel/rcsb 2025-10-02T21:26:27,926 copying build/lib/rcsb/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb 2025-10-02T21:26:27,929 creating build/bdist.linux-armv7l/wheel/rcsb/workflow 2025-10-02T21:26:27,931 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/bcif 2025-10-02T21:26:27,933 copying build/lib/rcsb/workflow/bcif/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/bcif 2025-10-02T21:26:27,936 copying build/lib/rcsb/workflow/bcif/task_functions.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/bcif 2025-10-02T21:26:27,939 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/targets 2025-10-02T21:26:27,941 copying build/lib/rcsb/workflow/targets/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/targets 2025-10-02T21:26:27,943 copying build/lib/rcsb/workflow/targets/ProteinTargetSequenceExecutionWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/targets 2025-10-02T21:26:27,945 copying build/lib/rcsb/workflow/targets/ProteinTargetSequenceWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/targets 2025-10-02T21:26:27,948 copying build/lib/rcsb/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow 2025-10-02T21:26:27,951 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/wuw 2025-10-02T21:26:27,952 copying build/lib/rcsb/workflow/wuw/PdbCsmImageWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/wuw 2025-10-02T21:26:27,955 copying build/lib/rcsb/workflow/wuw/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/wuw 2025-10-02T21:26:27,957 copying build/lib/rcsb/workflow/wuw/BcifWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/wuw 2025-10-02T21:26:27,959 copying build/lib/rcsb/workflow/wuw/WuwUtils.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/wuw 2025-10-02T21:26:27,962 copying build/lib/rcsb/workflow/wuw/ExDbWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/wuw 2025-10-02T21:26:27,965 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/cli 2025-10-02T21:26:27,967 copying build/lib/rcsb/workflow/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/cli 2025-10-02T21:26:27,969 copying build/lib/rcsb/workflow/cli/ImgExec.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/cli 2025-10-02T21:26:27,971 copying build/lib/rcsb/workflow/cli/BcifExec.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/cli 2025-10-02T21:26:27,973 copying build/lib/rcsb/workflow/cli/ExDbExec.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/cli 2025-10-02T21:26:27,977 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/chem 2025-10-02T21:26:27,978 copying build/lib/rcsb/workflow/chem/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/chem 2025-10-02T21:26:27,980 copying build/lib/rcsb/workflow/chem/ChemCompSearchIndexWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/chem 2025-10-02T21:26:27,982 copying build/lib/rcsb/workflow/chem/ChemCompFileWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/chem 2025-10-02T21:26:27,984 copying build/lib/rcsb/workflow/chem/ChemCompImageWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/chem 2025-10-02T21:26:27,987 running install_egg_info 2025-10-02T21:26:28,021 running egg_info 2025-10-02T21:26:28,049 writing rcsb.workflow.egg-info/PKG-INFO 2025-10-02T21:26:28,054 writing dependency_links to rcsb.workflow.egg-info/dependency_links.txt 2025-10-02T21:26:28,083 writing entry points to rcsb.workflow.egg-info/entry_points.txt 2025-10-02T21:26:28,086 writing requirements to rcsb.workflow.egg-info/requires.txt 2025-10-02T21:26:28,089 writing top-level names to rcsb.workflow.egg-info/top_level.txt 2025-10-02T21:26:28,357 reading manifest file 'rcsb.workflow.egg-info/SOURCES.txt' 2025-10-02T21:26:28,361 reading manifest template 'MANIFEST.in' 2025-10-02T21:26:28,362 adding license file 'LICENSE' 2025-10-02T21:26:28,366 writing manifest file 'rcsb.workflow.egg-info/SOURCES.txt' 2025-10-02T21:26:28,367 Copying rcsb.workflow.egg-info to build/bdist.linux-armv7l/wheel/./rcsb.workflow-0.62-py3.11.egg-info 2025-10-02T21:26:28,381 running install_scripts 2025-10-02T21:26:28,395 creating build/bdist.linux-armv7l/wheel/rcsb_workflow-0.62.dist-info/WHEEL 2025-10-02T21:26:28,398 creating '/tmp/pip-wheel-_o32pg10/rcsb_workflow-0.62-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-10-02T21:26:28,401 adding 'rcsb/__init__.py' 2025-10-02T21:26:28,403 adding 'rcsb/workflow/__init__.py' 2025-10-02T21:26:28,404 adding 'rcsb/workflow/bcif/__init__.py' 2025-10-02T21:26:28,406 adding 'rcsb/workflow/bcif/task_functions.py' 2025-10-02T21:26:28,408 adding 'rcsb/workflow/chem/ChemCompFileWorkflow.py' 2025-10-02T21:26:28,410 adding 'rcsb/workflow/chem/ChemCompImageWorkflow.py' 2025-10-02T21:26:28,412 adding 'rcsb/workflow/chem/ChemCompSearchIndexWorkflow.py' 2025-10-02T21:26:28,414 adding 'rcsb/workflow/chem/__init__.py' 2025-10-02T21:26:28,417 adding 'rcsb/workflow/cli/BcifExec.py' 2025-10-02T21:26:28,421 adding 'rcsb/workflow/cli/ExDbExec.py' 2025-10-02T21:26:28,423 adding 'rcsb/workflow/cli/ImgExec.py' 2025-10-02T21:26:28,425 adding 'rcsb/workflow/cli/__init__.py' 2025-10-02T21:26:28,428 adding 'rcsb/workflow/targets/ProteinTargetSequenceExecutionWorkflow.py' 2025-10-02T21:26:28,433 adding 'rcsb/workflow/targets/ProteinTargetSequenceWorkflow.py' 2025-10-02T21:26:28,435 adding 'rcsb/workflow/targets/__init__.py' 2025-10-02T21:26:28,437 adding 'rcsb/workflow/wuw/BcifWorkflow.py' 2025-10-02T21:26:28,441 adding 'rcsb/workflow/wuw/ExDbWorkflow.py' 2025-10-02T21:26:28,444 adding 'rcsb/workflow/wuw/PdbCsmImageWorkflow.py' 2025-10-02T21:26:28,446 adding 'rcsb/workflow/wuw/WuwUtils.py' 2025-10-02T21:26:28,447 adding 'rcsb/workflow/wuw/__init__.py' 2025-10-02T21:26:28,452 adding 'rcsb_workflow-0.62.dist-info/licenses/LICENSE' 2025-10-02T21:26:28,454 adding 'rcsb_workflow-0.62.dist-info/METADATA' 2025-10-02T21:26:28,456 adding 'rcsb_workflow-0.62.dist-info/WHEEL' 2025-10-02T21:26:28,457 adding 'rcsb_workflow-0.62.dist-info/entry_points.txt' 2025-10-02T21:26:28,459 adding 'rcsb_workflow-0.62.dist-info/top_level.txt' 2025-10-02T21:26:28,461 adding 'rcsb_workflow-0.62.dist-info/RECORD' 2025-10-02T21:26:28,465 removing build/bdist.linux-armv7l/wheel 2025-10-02T21:26:28,599 Building wheel for rcsb-workflow (setup.py): finished with status 'done' 2025-10-02T21:26:28,602 Created wheel for rcsb-workflow: filename=rcsb_workflow-0.62-py2.py3-none-any.whl size=40343 sha256=74654ca33263467f788baf3c46b3fbea1a16283f9d8e2a5d6af8a60ef718b032 2025-10-02T21:26:28,603 Stored in directory: /tmp/pip-ephem-wheel-cache-17hsh5e1/wheels/5f/00/93/2509509ca651fa21836f10b9feb1bcf83b953ce330c2cf068d 2025-10-02T21:26:28,614 Successfully built rcsb-workflow 2025-10-02T21:26:28,618 Removed build tracker: '/tmp/pip-build-tracker-s6a_apy2'