2025-10-10T02:29:27,936 Created temporary directory: /tmp/pip-ephem-wheel-cache-v_m6pnix
2025-10-10T02:29:27,938 Created temporary directory: /tmp/pip-build-tracker-5skd4in2
2025-10-10T02:29:27,939 Initialized build tracking at /tmp/pip-build-tracker-5skd4in2
2025-10-10T02:29:27,939 Created build tracker: /tmp/pip-build-tracker-5skd4in2
2025-10-10T02:29:27,939 Entered build tracker: /tmp/pip-build-tracker-5skd4in2
2025-10-10T02:29:27,940 Created temporary directory: /tmp/pip-wheel-fuh1ymdd
2025-10-10T02:29:27,944 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-10T02:29:27,946 Created temporary directory: /tmp/pip-ephem-wheel-cache-v1vhp6no
2025-10-10T02:29:27,973 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-10T02:29:27,977 2 location(s) to search for versions of scine-chemoton:
2025-10-10T02:29:27,977 * https://pypi.org/simple/scine-chemoton/
2025-10-10T02:29:27,977 * https://www.piwheels.org/simple/scine-chemoton/
2025-10-10T02:29:27,977 Fetching project page and analyzing links: https://pypi.org/simple/scine-chemoton/
2025-10-10T02:29:27,978 Getting page https://pypi.org/simple/scine-chemoton/
2025-10-10T02:29:27,980 Found index url https://pypi.org/simple
2025-10-10T02:29:28,223 Fetched page https://pypi.org/simple/scine-chemoton/ as application/vnd.pypi.simple.v1+json
2025-10-10T02:29:28,226   Found link https://files.pythonhosted.org/packages/bd/5d/80449140e51bbb4133a2b4bfef310fefbdf3b4cac6e67efedd4a821ea4be/scine_chemoton-2.0.0.tar.gz (from https://pypi.org/simple/scine-chemoton/) (requires-python:>=3.6), version: 2.0.0
2025-10-10T02:29:28,227   Found link https://files.pythonhosted.org/packages/51/e3/d39e2dd58050b7a3a8c1c081a2754efc1d4158ea646c9443609608661ef6/scine_chemoton-2.1.0.tar.gz (from https://pypi.org/simple/scine-chemoton/) (requires-python:>=3.6), version: 2.1.0
2025-10-10T02:29:28,228   Found link https://files.pythonhosted.org/packages/9e/2c/3a11352d6a61564e8b4f804f1eb6963ce5d43e3c8db64051b9e452bb2f43/scine_chemoton-2.2.0.tar.gz (from https://pypi.org/simple/scine-chemoton/) (requires-python:>=3.6), version: 2.2.0
2025-10-10T02:29:28,229   Found link https://files.pythonhosted.org/packages/47/81/65f8d79d054ffd48cfa475f155c1a632bf5bdfc41be146744fb557a0d152/scine_chemoton-3.0.0.tar.gz (from https://pypi.org/simple/scine-chemoton/) (requires-python:>=3.6), version: 3.0.0
2025-10-10T02:29:28,230   Found link https://files.pythonhosted.org/packages/4e/d5/f7cf3f426b4ddb17a9d1be0a6d1961e36ca7792d3f355823d6fe8f5c1189/scine_chemoton-3.1.0.tar.gz (from https://pypi.org/simple/scine-chemoton/) (requires-python:>=3.6), version: 3.1.0
2025-10-10T02:29:28,231   Found link https://files.pythonhosted.org/packages/d0/ce/e839cfd9648546e17c546f96622c688b43a24e08441bd970bc23469d92f7/scine_chemoton-4.0.0.tar.gz (from https://pypi.org/simple/scine-chemoton/) (requires-python:>=3.6), version: 4.0.0
2025-10-10T02:29:28,233   Found link https://files.pythonhosted.org/packages/95/b4/410518abb0dd5be96f3ff4ac89353f93cf83713636ff659e01108572642a/scine_chemoton-4.1.0.tar.gz (from https://pypi.org/simple/scine-chemoton/) (requires-python:>=3.6), version: 4.1.0
2025-10-10T02:29:28,233 Fetching project page and analyzing links: https://www.piwheels.org/simple/scine-chemoton/
2025-10-10T02:29:28,234 Getting page https://www.piwheels.org/simple/scine-chemoton/
2025-10-10T02:29:28,236 Found index url https://www.piwheels.org/simple
2025-10-10T02:29:28,420 Fetched page https://www.piwheels.org/simple/scine-chemoton/ as text/html
2025-10-10T02:29:28,424   Skipping link: No binaries permitted for scine-chemoton: https://archive1.piwheels.org/simple/scine-chemoton/scine_chemoton-4.0.0-py3-none-any.whl#sha256=fd1232c063b0abd601eee2961e0ed138617f76949d21394c2eeb217915ab6359 (from https://www.piwheels.org/simple/scine-chemoton/) (requires-python:>=3.6)
2025-10-10T02:29:28,425   Skipping link: No binaries permitted for scine-chemoton: https://archive1.piwheels.org/simple/scine-chemoton/scine_chemoton-3.1.0-py3-none-any.whl#sha256=1df7499ea6c87fe5eacbe050514b814946087b7873503d5e3ebdc7d15f8a76ff (from https://www.piwheels.org/simple/scine-chemoton/) (requires-python:>=3.6)
2025-10-10T02:29:28,425   Skipping link: No binaries permitted for scine-chemoton: https://archive1.piwheels.org/simple/scine-chemoton/scine_chemoton-3.0.0-py3-none-any.whl#sha256=142b37dc057e4e04aba6221fb4e3091c233c070dc65225e6e46d7bacdbd428f3 (from https://www.piwheels.org/simple/scine-chemoton/) (requires-python:>=3.6)
2025-10-10T02:29:28,426   Skipping link: No binaries permitted for scine-chemoton: https://archive1.piwheels.org/simple/scine-chemoton/scine_chemoton-2.2.0-py3-none-any.whl#sha256=8534283be00754497ef18d27b3624e20c2e00eb97992ed0b90b953a799be48bf (from https://www.piwheels.org/simple/scine-chemoton/) (requires-python:>=3.6)
2025-10-10T02:29:28,427   Skipping link: No binaries permitted for scine-chemoton: https://archive1.piwheels.org/simple/scine-chemoton/scine_chemoton-2.1.0-py3-none-any.whl#sha256=934a5b4385907b7fb095a8ea1872c183f29e1cb7ba0226d17366582e56377cbd (from https://www.piwheels.org/simple/scine-chemoton/) (requires-python:>=3.6)
2025-10-10T02:29:28,427   Skipping link: No binaries permitted for scine-chemoton: https://archive1.piwheels.org/simple/scine-chemoton/scine_chemoton-2.0.0-py3-none-any.whl#sha256=f1d52dcc1346e1cb0359760384eeab841059dcd3e6bcf51e32220788e2f4fcae (from https://www.piwheels.org/simple/scine-chemoton/) (requires-python:>=3.6)
2025-10-10T02:29:28,428 Skipping link: not a file: https://www.piwheels.org/simple/scine-chemoton/
2025-10-10T02:29:28,428 Skipping link: not a file: https://pypi.org/simple/scine-chemoton/
2025-10-10T02:29:28,451 Given no hashes to check 1 links for project 'scine-chemoton': discarding no candidates
2025-10-10T02:29:28,472 Collecting scine-chemoton==4.1.0
2025-10-10T02:29:28,475   Created temporary directory: /tmp/pip-unpack-0q_4bp8m
2025-10-10T02:29:28,646   Downloading scine_chemoton-4.1.0.tar.gz (398 kB)
2025-10-10T02:29:29,170   Added scine-chemoton==4.1.0 from https://files.pythonhosted.org/packages/95/b4/410518abb0dd5be96f3ff4ac89353f93cf83713636ff659e01108572642a/scine_chemoton-4.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-5skd4in2'
2025-10-10T02:29:29,172   Running setup.py (path:/tmp/pip-wheel-fuh1ymdd/scine-chemoton_b0de33fe8446420280bf6b6a86186117/setup.py) egg_info for package scine-chemoton
2025-10-10T02:29:29,173   Created temporary directory: /tmp/pip-pip-egg-info-6xgrhj5q
2025-10-10T02:29:29,174   Preparing metadata (setup.py): started
2025-10-10T02:29:29,175   Running command python setup.py egg_info
2025-10-10T02:29:29,788   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite'
2025-10-10T02:29:29,788     warnings.warn(msg)
2025-10-10T02:29:29,789   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
2025-10-10T02:29:29,790     warnings.warn(msg)
2025-10-10T02:29:30,113   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-10-10T02:29:30,114   !!

2025-10-10T02:29:30,116           ********************************************************************************
2025-10-10T02:29:30,116           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-10-10T02:29:30,118           License :: OSI Approved :: BSD License

2025-10-10T02:29:30,119           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-10-10T02:29:30,119           ********************************************************************************

2025-10-10T02:29:30,121   !!
2025-10-10T02:29:30,121     self._finalize_license_expression()
2025-10-10T02:29:30,147   running egg_info
2025-10-10T02:29:30,221   creating /tmp/pip-pip-egg-info-6xgrhj5q/scine_chemoton.egg-info
2025-10-10T02:29:30,222   writing /tmp/pip-pip-egg-info-6xgrhj5q/scine_chemoton.egg-info/PKG-INFO
2025-10-10T02:29:30,226   writing dependency_links to /tmp/pip-pip-egg-info-6xgrhj5q/scine_chemoton.egg-info/dependency_links.txt
2025-10-10T02:29:30,228   writing entry points to /tmp/pip-pip-egg-info-6xgrhj5q/scine_chemoton.egg-info/entry_points.txt
2025-10-10T02:29:30,230   writing requirements to /tmp/pip-pip-egg-info-6xgrhj5q/scine_chemoton.egg-info/requires.txt
2025-10-10T02:29:30,231   writing top-level names to /tmp/pip-pip-egg-info-6xgrhj5q/scine_chemoton.egg-info/top_level.txt
2025-10-10T02:29:30,232   writing manifest file '/tmp/pip-pip-egg-info-6xgrhj5q/scine_chemoton.egg-info/SOURCES.txt'
2025-10-10T02:29:30,359   reading manifest file '/tmp/pip-pip-egg-info-6xgrhj5q/scine_chemoton.egg-info/SOURCES.txt'
2025-10-10T02:29:30,361   reading manifest template 'MANIFEST.in'
2025-10-10T02:29:30,362   warning: no files found matching 'LICENSE'
2025-10-10T02:29:30,364   warning: no previously-included files matching '__pycache__' found under directory '*'
2025-10-10T02:29:30,365   warning: no previously-included files matching '*.py[co]' found under directory '*'
2025-10-10T02:29:30,436   no previously-included directories found matching 'tests'
2025-10-10T02:29:30,437   adding license file 'LICENSE.txt'
2025-10-10T02:29:30,446   writing manifest file '/tmp/pip-pip-egg-info-6xgrhj5q/scine_chemoton.egg-info/SOURCES.txt'
2025-10-10T02:29:30,572   Preparing metadata (setup.py): finished with status 'done'
2025-10-10T02:29:30,577   Source in /tmp/pip-wheel-fuh1ymdd/scine-chemoton_b0de33fe8446420280bf6b6a86186117 has version 4.1.0, which satisfies requirement scine-chemoton==4.1.0 from https://files.pythonhosted.org/packages/95/b4/410518abb0dd5be96f3ff4ac89353f93cf83713636ff659e01108572642a/scine_chemoton-4.1.0.tar.gz
2025-10-10T02:29:30,578   Removed scine-chemoton==4.1.0 from https://files.pythonhosted.org/packages/95/b4/410518abb0dd5be96f3ff4ac89353f93cf83713636ff659e01108572642a/scine_chemoton-4.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-5skd4in2'
2025-10-10T02:29:30,585 Created temporary directory: /tmp/pip-unpack-4z14mxme
2025-10-10T02:29:30,586 Building wheels for collected packages: scine-chemoton
2025-10-10T02:29:30,591   Created temporary directory: /tmp/pip-wheel-5woizznt
2025-10-10T02:29:30,592   Building wheel for scine-chemoton (setup.py): started
2025-10-10T02:29:30,593   Destination directory: /tmp/pip-wheel-5woizznt
2025-10-10T02:29:30,594   Running command python setup.py bdist_wheel
2025-10-10T02:29:31,221   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite'
2025-10-10T02:29:31,222     warnings.warn(msg)
2025-10-10T02:29:31,222   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
2025-10-10T02:29:31,223     warnings.warn(msg)
2025-10-10T02:29:31,534   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-10-10T02:29:31,535   !!

2025-10-10T02:29:31,536           ********************************************************************************
2025-10-10T02:29:31,537           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-10-10T02:29:31,538           License :: OSI Approved :: BSD License

2025-10-10T02:29:31,539           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-10-10T02:29:31,540           ********************************************************************************

2025-10-10T02:29:31,541   !!
2025-10-10T02:29:31,542     self._finalize_license_expression()
2025-10-10T02:29:31,542   running bdist_wheel
2025-10-10T02:29:31,687   running build
2025-10-10T02:29:31,687   running build_py
2025-10-10T02:29:31,721   creating build/lib/scine_chemoton
2025-10-10T02:29:31,724   copying scine_chemoton/__init__.py -> build/lib/scine_chemoton
2025-10-10T02:29:31,727   copying scine_chemoton/engine.py -> build/lib/scine_chemoton
2025-10-10T02:29:31,730   copying scine_chemoton/surface_main.py -> build/lib/scine_chemoton
2025-10-10T02:29:31,733   copying scine_chemoton/default_settings.py -> build/lib/scine_chemoton
2025-10-10T02:29:31,735   copying scine_chemoton/_version.py -> build/lib/scine_chemoton
2025-10-10T02:29:31,737   copying scine_chemoton/__main__.py -> build/lib/scine_chemoton
2025-10-10T02:29:31,740   creating build/lib/scine_chemoton/utilities
2025-10-10T02:29:31,741   copying scine_chemoton/utilities/place_holder_model.py -> build/lib/scine_chemoton/utilities
2025-10-10T02:29:31,743   copying scine_chemoton/utilities/uncertainties.py -> build/lib/scine_chemoton/utilities
2025-10-10T02:29:31,746   copying scine_chemoton/utilities/comparisons.py -> build/lib/scine_chemoton/utilities
2025-10-10T02:29:31,748   copying scine_chemoton/utilities/get_molecular_formula.py -> build/lib/scine_chemoton/utilities
2025-10-10T02:29:31,750   copying scine_chemoton/utilities/model_combinations.py -> build/lib/scine_chemoton/utilities
2025-10-10T02:29:31,752   copying scine_chemoton/utilities/__init__.py -> build/lib/scine_chemoton/utilities
2025-10-10T02:29:31,754   copying scine_chemoton/utilities/warnings.py -> build/lib/scine_chemoton/utilities
2025-10-10T02:29:31,756   copying scine_chemoton/utilities/insert_initial_structure.py -> build/lib/scine_chemoton/utilities
2025-10-10T02:29:31,758   copying scine_chemoton/utilities/masm.py -> build/lib/scine_chemoton/utilities
2025-10-10T02:29:31,761   copying scine_chemoton/utilities/calculation_creation_helpers.py -> build/lib/scine_chemoton/utilities
2025-10-10T02:29:31,763   copying scine_chemoton/utilities/datastructure_transfer.py -> build/lib/scine_chemoton/utilities
2025-10-10T02:29:31,765   copying scine_chemoton/utilities/options.py -> build/lib/scine_chemoton/utilities
2025-10-10T02:29:31,768   creating build/lib/scine_chemoton/steering_wheel
2025-10-10T02:29:31,769   copying scine_chemoton/steering_wheel/result_transfer.py -> build/lib/scine_chemoton/steering_wheel
2025-10-10T02:29:31,771   copying scine_chemoton/steering_wheel/__init__.py -> build/lib/scine_chemoton/steering_wheel
2025-10-10T02:29:31,774   copying scine_chemoton/steering_wheel/datastructures.py -> build/lib/scine_chemoton/steering_wheel
2025-10-10T02:29:31,778   creating build/lib/scine_chemoton/gears
2025-10-10T02:29:31,779   copying scine_chemoton/gears/pathfinder.py -> build/lib/scine_chemoton/gears
2025-10-10T02:29:31,783   copying scine_chemoton/gears/kinetics.py -> build/lib/scine_chemoton/gears
2025-10-10T02:29:31,787   copying scine_chemoton/gears/single_point.py -> build/lib/scine_chemoton/gears
2025-10-10T02:29:31,789   copying scine_chemoton/gears/compound.py -> build/lib/scine_chemoton/gears
2025-10-10T02:29:31,792   copying scine_chemoton/gears/reaction.py -> build/lib/scine_chemoton/gears
2025-10-10T02:29:31,795   copying scine_chemoton/gears/__init__.py -> build/lib/scine_chemoton/gears
2025-10-10T02:29:31,797   copying scine_chemoton/gears/rerun_calculations.py -> build/lib/scine_chemoton/gears
2025-10-10T02:29:31,800   copying scine_chemoton/gears/thermo.py -> build/lib/scine_chemoton/gears
2025-10-10T02:29:31,802   copying scine_chemoton/gears/scheduler.py -> build/lib/scine_chemoton/gears
2025-10-10T02:29:31,805   creating build/lib/scine_chemoton/resources
2025-10-10T02:29:31,806   copying scine_chemoton/resources/__init__.py -> build/lib/scine_chemoton/resources
2025-10-10T02:29:31,809   creating build/lib/scine_chemoton/filters
2025-10-10T02:29:31,810   copying scine_chemoton/filters/reactive_site_filters.py -> build/lib/scine_chemoton/filters
2025-10-10T02:29:31,813   copying scine_chemoton/filters/__init__.py -> build/lib/scine_chemoton/filters
2025-10-10T02:29:31,815   copying scine_chemoton/filters/elementary_step_filters.py -> build/lib/scine_chemoton/filters
2025-10-10T02:29:31,817   copying scine_chemoton/filters/aggregate_filters.py -> build/lib/scine_chemoton/filters
2025-10-10T02:29:31,821   copying scine_chemoton/filters/structure_filters.py -> build/lib/scine_chemoton/filters
2025-10-10T02:29:31,823   copying scine_chemoton/filters/further_exploration_filters.py -> build/lib/scine_chemoton/filters
2025-10-10T02:29:31,826   copying scine_chemoton/filters/reaction_filters.py -> build/lib/scine_chemoton/filters
2025-10-10T02:29:31,829   creating build/lib/scine_chemoton/reaction_rules
2025-10-10T02:29:31,830   copying scine_chemoton/reaction_rules/distance_rules.py -> build/lib/scine_chemoton/reaction_rules
2025-10-10T02:29:31,833   copying scine_chemoton/reaction_rules/polarization_rules.py -> build/lib/scine_chemoton/reaction_rules
2025-10-10T02:29:31,835   copying scine_chemoton/reaction_rules/element_rules.py -> build/lib/scine_chemoton/reaction_rules
2025-10-10T02:29:31,837   copying scine_chemoton/reaction_rules/__init__.py -> build/lib/scine_chemoton/reaction_rules
2025-10-10T02:29:31,839   copying scine_chemoton/reaction_rules/reaction_rule_library.py -> build/lib/scine_chemoton/reaction_rules
2025-10-10T02:29:31,842   creating build/lib/scine_chemoton/utilities/db_object_wrappers
2025-10-10T02:29:31,843   copying scine_chemoton/utilities/db_object_wrappers/ensemble_wrapper.py -> build/lib/scine_chemoton/utilities/db_object_wrappers
2025-10-10T02:29:31,846   copying scine_chemoton/utilities/db_object_wrappers/reaction_wrapper.py -> build/lib/scine_chemoton/utilities/db_object_wrappers
2025-10-10T02:29:31,848   copying scine_chemoton/utilities/db_object_wrappers/__init__.py -> build/lib/scine_chemoton/utilities/db_object_wrappers
2025-10-10T02:29:31,850   copying scine_chemoton/utilities/db_object_wrappers/reaction_cache.py -> build/lib/scine_chemoton/utilities/db_object_wrappers
2025-10-10T02:29:31,852   copying scine_chemoton/utilities/db_object_wrappers/aggregate_wrapper.py -> build/lib/scine_chemoton/utilities/db_object_wrappers
2025-10-10T02:29:31,854   copying scine_chemoton/utilities/db_object_wrappers/thermodynamic_properties.py -> build/lib/scine_chemoton/utilities/db_object_wrappers
2025-10-10T02:29:31,857   copying scine_chemoton/utilities/db_object_wrappers/aggregate_cache.py -> build/lib/scine_chemoton/utilities/db_object_wrappers
2025-10-10T02:29:31,859   copying scine_chemoton/utilities/db_object_wrappers/wrapper_caches.py -> build/lib/scine_chemoton/utilities/db_object_wrappers
2025-10-10T02:29:31,862   creating build/lib/scine_chemoton/utilities/kinetics
2025-10-10T02:29:31,863   copying scine_chemoton/utilities/kinetics/eckart_tunneling.py -> build/lib/scine_chemoton/utilities/kinetics
2025-10-10T02:29:31,866   copying scine_chemoton/utilities/kinetics/__init__.py -> build/lib/scine_chemoton/utilities/kinetics
2025-10-10T02:29:31,868   creating build/lib/scine_chemoton/utilities/surfaces
2025-10-10T02:29:31,869   copying scine_chemoton/utilities/surfaces/property_names.py -> build/lib/scine_chemoton/utilities/surfaces
2025-10-10T02:29:31,871   copying scine_chemoton/utilities/surfaces/__init__.py -> build/lib/scine_chemoton/utilities/surfaces
2025-10-10T02:29:31,873   copying scine_chemoton/utilities/surfaces/pymatgen_interface.py -> build/lib/scine_chemoton/utilities/surfaces
2025-10-10T02:29:31,876   copying scine_chemoton/utilities/surfaces/periodic_utils.py -> build/lib/scine_chemoton/utilities/surfaces
2025-10-10T02:29:31,879   copying scine_chemoton/utilities/surfaces/cohesive_energies.py -> build/lib/scine_chemoton/utilities/surfaces
2025-10-10T02:29:31,881   creating build/lib/scine_chemoton/utilities/reactive_complexes
2025-10-10T02:29:31,883   copying scine_chemoton/utilities/reactive_complexes/__init__.py -> build/lib/scine_chemoton/utilities/reactive_complexes
2025-10-10T02:29:31,885   copying scine_chemoton/utilities/reactive_complexes/unit_circle.py -> build/lib/scine_chemoton/utilities/reactive_complexes
2025-10-10T02:29:31,887   copying scine_chemoton/utilities/reactive_complexes/lebedev_sphere.py -> build/lib/scine_chemoton/utilities/reactive_complexes
2025-10-10T02:29:31,900   copying scine_chemoton/utilities/reactive_complexes/adsorption.py -> build/lib/scine_chemoton/utilities/reactive_complexes
2025-10-10T02:29:31,904   copying scine_chemoton/utilities/reactive_complexes/inter_reactive_complexes.py -> build/lib/scine_chemoton/utilities/reactive_complexes
2025-10-10T02:29:31,907   creating build/lib/scine_chemoton/steering_wheel/network_expansions
2025-10-10T02:29:31,908   copying scine_chemoton/steering_wheel/network_expansions/__init__.py -> build/lib/scine_chemoton/steering_wheel/network_expansions
2025-10-10T02:29:31,911   copying scine_chemoton/steering_wheel/network_expansions/conformers.py -> build/lib/scine_chemoton/steering_wheel/network_expansions
2025-10-10T02:29:31,913   copying scine_chemoton/steering_wheel/network_expansions/reactions.py -> build/lib/scine_chemoton/steering_wheel/network_expansions
2025-10-10T02:29:31,916   copying scine_chemoton/steering_wheel/network_expansions/basics.py -> build/lib/scine_chemoton/steering_wheel/network_expansions
2025-10-10T02:29:31,919   creating build/lib/scine_chemoton/steering_wheel/selections
2025-10-10T02:29:31,920   copying scine_chemoton/steering_wheel/selections/__init__.py -> build/lib/scine_chemoton/steering_wheel/selections
2025-10-10T02:29:31,923   copying scine_chemoton/steering_wheel/selections/conformers.py -> build/lib/scine_chemoton/steering_wheel/selections
2025-10-10T02:29:31,925   copying scine_chemoton/steering_wheel/selections/input_selections.py -> build/lib/scine_chemoton/steering_wheel/selections
2025-10-10T02:29:31,927   copying scine_chemoton/steering_wheel/selections/organometallic_complexes.py -> build/lib/scine_chemoton/steering_wheel/selections
2025-10-10T02:29:31,929   copying scine_chemoton/steering_wheel/selections/basics.py -> build/lib/scine_chemoton/steering_wheel/selections
2025-10-10T02:29:31,932   creating build/lib/scine_chemoton/gears/conformers
2025-10-10T02:29:31,933   copying scine_chemoton/gears/conformers/brute_force.py -> build/lib/scine_chemoton/gears/conformers
2025-10-10T02:29:31,936   copying scine_chemoton/gears/conformers/__init__.py -> build/lib/scine_chemoton/gears/conformers
2025-10-10T02:29:31,938   creating build/lib/scine_chemoton/gears/elementary_steps
2025-10-10T02:29:31,939   copying scine_chemoton/gears/elementary_steps/minimum_energy_conformer.py -> build/lib/scine_chemoton/gears/elementary_steps
2025-10-10T02:29:31,942   copying scine_chemoton/gears/elementary_steps/brute_force.py -> build/lib/scine_chemoton/gears/elementary_steps
2025-10-10T02:29:31,944   copying scine_chemoton/gears/elementary_steps/selected_structures.py -> build/lib/scine_chemoton/gears/elementary_steps
2025-10-10T02:29:31,946   copying scine_chemoton/gears/elementary_steps/__init__.py -> build/lib/scine_chemoton/gears/elementary_steps
2025-10-10T02:29:31,949   copying scine_chemoton/gears/elementary_steps/minimal.py -> build/lib/scine_chemoton/gears/elementary_steps
2025-10-10T02:29:31,951   creating build/lib/scine_chemoton/gears/network_refinement
2025-10-10T02:29:31,952   copying scine_chemoton/gears/network_refinement/reaction_based_refinement.py -> build/lib/scine_chemoton/gears/network_refinement
2025-10-10T02:29:31,955   copying scine_chemoton/gears/network_refinement/enabling.py -> build/lib/scine_chemoton/gears/network_refinement
2025-10-10T02:29:31,958   copying scine_chemoton/gears/network_refinement/refinement.py -> build/lib/scine_chemoton/gears/network_refinement
2025-10-10T02:29:31,961   copying scine_chemoton/gears/network_refinement/disabling.py -> build/lib/scine_chemoton/gears/network_refinement
2025-10-10T02:29:31,963   copying scine_chemoton/gears/network_refinement/__init__.py -> build/lib/scine_chemoton/gears/network_refinement
2025-10-10T02:29:31,965   copying scine_chemoton/gears/network_refinement/aggregate_based_refinement.py -> build/lib/scine_chemoton/gears/network_refinement
2025-10-10T02:29:31,968   copying scine_chemoton/gears/network_refinement/calculation_based_refinement.py -> build/lib/scine_chemoton/gears/network_refinement
2025-10-10T02:29:31,971   creating build/lib/scine_chemoton/gears/kinetic_modeling
2025-10-10T02:29:31,972   copying scine_chemoton/gears/kinetic_modeling/prepare_kinetic_modeling_job.py -> build/lib/scine_chemoton/gears/kinetic_modeling
2025-10-10T02:29:31,975   copying scine_chemoton/gears/kinetic_modeling/__init__.py -> build/lib/scine_chemoton/gears/kinetic_modeling
2025-10-10T02:29:31,977   copying scine_chemoton/gears/kinetic_modeling/atomization.py -> build/lib/scine_chemoton/gears/kinetic_modeling
2025-10-10T02:29:31,980   copying scine_chemoton/gears/kinetic_modeling/rms_microcanonical_kinetic_modeling.py -> build/lib/scine_chemoton/gears/kinetic_modeling
2025-10-10T02:29:31,982   copying scine_chemoton/gears/kinetic_modeling/rms_network_extractor.py -> build/lib/scine_chemoton/gears/kinetic_modeling
2025-10-10T02:29:31,984   copying scine_chemoton/gears/kinetic_modeling/rms_kinetic_modeling.py -> build/lib/scine_chemoton/gears/kinetic_modeling
2025-10-10T02:29:31,987   copying scine_chemoton/gears/kinetic_modeling/kinetx_kinetic_modeling.py -> build/lib/scine_chemoton/gears/kinetic_modeling
2025-10-10T02:29:31,989   creating build/lib/scine_chemoton/gears/elementary_steps/trial_generator
2025-10-10T02:29:31,991   copying scine_chemoton/gears/elementary_steps/trial_generator/fragment_based.py -> build/lib/scine_chemoton/gears/elementary_steps/trial_generator
2025-10-10T02:29:31,994   copying scine_chemoton/gears/elementary_steps/trial_generator/fast_dissociations.py -> build/lib/scine_chemoton/gears/elementary_steps/trial_generator
2025-10-10T02:29:31,997   copying scine_chemoton/gears/elementary_steps/trial_generator/connectivity_analyzer.py -> build/lib/scine_chemoton/gears/elementary_steps/trial_generator
2025-10-10T02:29:31,999   copying scine_chemoton/gears/elementary_steps/trial_generator/adsorptions.py -> build/lib/scine_chemoton/gears/elementary_steps/trial_generator
2025-10-10T02:29:32,002   copying scine_chemoton/gears/elementary_steps/trial_generator/bond_based.py -> build/lib/scine_chemoton/gears/elementary_steps/trial_generator
2025-10-10T02:29:32,005   copying scine_chemoton/gears/elementary_steps/trial_generator/__init__.py -> build/lib/scine_chemoton/gears/elementary_steps/trial_generator
2025-10-10T02:29:32,008   copying scine_chemoton/gears/elementary_steps/trial_generator/template_based.py -> build/lib/scine_chemoton/gears/elementary_steps/trial_generator
2025-10-10T02:29:32,011   creating build/lib/scine_chemoton/gears/network_refinement/structure_refinement
2025-10-10T02:29:32,012   copying scine_chemoton/gears/network_refinement/structure_refinement/minimum_structure_reoptimization.py -> build/lib/scine_chemoton/gears/network_refinement/structure_refinement
2025-10-10T02:29:32,015   copying scine_chemoton/gears/network_refinement/structure_refinement/__init__.py -> build/lib/scine_chemoton/gears/network_refinement/structure_refinement
2025-10-10T02:29:32,017   copying scine_chemoton/gears/network_refinement/structure_refinement/ts_refinement.py -> build/lib/scine_chemoton/gears/network_refinement/structure_refinement
2025-10-10T02:29:32,019   running egg_info
2025-10-10T02:29:32,050   writing scine_chemoton.egg-info/PKG-INFO
2025-10-10T02:29:32,054   writing dependency_links to scine_chemoton.egg-info/dependency_links.txt
2025-10-10T02:29:32,056   writing entry points to scine_chemoton.egg-info/entry_points.txt
2025-10-10T02:29:32,057   writing requirements to scine_chemoton.egg-info/requires.txt
2025-10-10T02:29:32,059   writing top-level names to scine_chemoton.egg-info/top_level.txt
2025-10-10T02:29:32,112   reading manifest file 'scine_chemoton.egg-info/SOURCES.txt'
2025-10-10T02:29:32,123   reading manifest template 'MANIFEST.in'
2025-10-10T02:29:32,124   warning: no files found matching 'LICENSE'
2025-10-10T02:29:32,126   warning: no previously-included files matching '__pycache__' found under directory '*'
2025-10-10T02:29:32,127   warning: no previously-included files matching '*.py[co]' found under directory '*'
2025-10-10T02:29:32,192   no previously-included directories found matching 'tests'
2025-10-10T02:29:32,193   adding license file 'LICENSE.txt'
2025-10-10T02:29:32,204   writing manifest file 'scine_chemoton.egg-info/SOURCES.txt'
2025-10-10T02:29:32,219   copying scine_chemoton/resources/methanol.xyz -> build/lib/scine_chemoton/resources
2025-10-10T02:29:32,221   copying scine_chemoton/resources/formaldehyde.xyz -> build/lib/scine_chemoton/resources
2025-10-10T02:29:32,263   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-10-10T02:29:32,264   !!

2025-10-10T02:29:32,265           ********************************************************************************
2025-10-10T02:29:32,265           Please avoid running ``setup.py`` directly.
2025-10-10T02:29:32,266           Instead, use pypa/build, pypa/installer or other
2025-10-10T02:29:32,266           standards-based tools.

2025-10-10T02:29:32,267           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-10-10T02:29:32,268           or your builds will no longer be supported.

2025-10-10T02:29:32,269           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-10-10T02:29:32,270           ********************************************************************************

2025-10-10T02:29:32,271   !!
2025-10-10T02:29:32,271     self.initialize_options()
2025-10-10T02:29:32,294   installing to build/bdist.linux-armv7l/wheel
2025-10-10T02:29:32,295   running install
2025-10-10T02:29:32,320   running install_lib
2025-10-10T02:29:32,350   creating build/bdist.linux-armv7l/wheel
2025-10-10T02:29:32,352   creating build/bdist.linux-armv7l/wheel/scine_chemoton
2025-10-10T02:29:32,354   creating build/bdist.linux-armv7l/wheel/scine_chemoton/utilities
2025-10-10T02:29:32,355   copying build/lib/scine_chemoton/utilities/place_holder_model.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities
2025-10-10T02:29:32,358   copying build/lib/scine_chemoton/utilities/uncertainties.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities
2025-10-10T02:29:32,360   copying build/lib/scine_chemoton/utilities/comparisons.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities
2025-10-10T02:29:32,362   copying build/lib/scine_chemoton/utilities/get_molecular_formula.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities
2025-10-10T02:29:32,364   copying build/lib/scine_chemoton/utilities/model_combinations.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities
2025-10-10T02:29:32,367   creating build/bdist.linux-armv7l/wheel/scine_chemoton/utilities/db_object_wrappers
2025-10-10T02:29:32,368   copying build/lib/scine_chemoton/utilities/db_object_wrappers/ensemble_wrapper.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/db_object_wrappers
2025-10-10T02:29:32,371   copying build/lib/scine_chemoton/utilities/db_object_wrappers/reaction_wrapper.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/db_object_wrappers
2025-10-10T02:29:32,374   copying build/lib/scine_chemoton/utilities/db_object_wrappers/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/db_object_wrappers
2025-10-10T02:29:32,376   copying build/lib/scine_chemoton/utilities/db_object_wrappers/reaction_cache.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/db_object_wrappers
2025-10-10T02:29:32,378   copying build/lib/scine_chemoton/utilities/db_object_wrappers/aggregate_wrapper.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/db_object_wrappers
2025-10-10T02:29:32,380   copying build/lib/scine_chemoton/utilities/db_object_wrappers/thermodynamic_properties.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/db_object_wrappers
2025-10-10T02:29:32,383   copying build/lib/scine_chemoton/utilities/db_object_wrappers/aggregate_cache.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/db_object_wrappers
2025-10-10T02:29:32,385   copying build/lib/scine_chemoton/utilities/db_object_wrappers/wrapper_caches.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/db_object_wrappers
2025-10-10T02:29:32,387   copying build/lib/scine_chemoton/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities
2025-10-10T02:29:32,390   creating build/bdist.linux-armv7l/wheel/scine_chemoton/utilities/kinetics
2025-10-10T02:29:32,391   copying build/lib/scine_chemoton/utilities/kinetics/eckart_tunneling.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/kinetics
2025-10-10T02:29:32,393   copying build/lib/scine_chemoton/utilities/kinetics/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/kinetics
2025-10-10T02:29:32,395   copying build/lib/scine_chemoton/utilities/warnings.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities
2025-10-10T02:29:32,397   copying build/lib/scine_chemoton/utilities/insert_initial_structure.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities
2025-10-10T02:29:32,400   creating build/bdist.linux-armv7l/wheel/scine_chemoton/utilities/surfaces
2025-10-10T02:29:32,401   copying build/lib/scine_chemoton/utilities/surfaces/property_names.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/surfaces
2025-10-10T02:29:32,403   copying build/lib/scine_chemoton/utilities/surfaces/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/surfaces
2025-10-10T02:29:32,405   copying build/lib/scine_chemoton/utilities/surfaces/pymatgen_interface.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/surfaces
2025-10-10T02:29:32,408   copying build/lib/scine_chemoton/utilities/surfaces/periodic_utils.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/surfaces
2025-10-10T02:29:32,411   copying build/lib/scine_chemoton/utilities/surfaces/cohesive_energies.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/surfaces
2025-10-10T02:29:32,413   copying build/lib/scine_chemoton/utilities/masm.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities
2025-10-10T02:29:32,415   copying build/lib/scine_chemoton/utilities/calculation_creation_helpers.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities
2025-10-10T02:29:32,417   copying build/lib/scine_chemoton/utilities/datastructure_transfer.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities
2025-10-10T02:29:32,420   copying build/lib/scine_chemoton/utilities/options.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities
2025-10-10T02:29:32,423   creating build/bdist.linux-armv7l/wheel/scine_chemoton/utilities/reactive_complexes
2025-10-10T02:29:32,424   copying build/lib/scine_chemoton/utilities/reactive_complexes/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/reactive_complexes
2025-10-10T02:29:32,426   copying build/lib/scine_chemoton/utilities/reactive_complexes/unit_circle.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/reactive_complexes
2025-10-10T02:29:32,429   copying build/lib/scine_chemoton/utilities/reactive_complexes/lebedev_sphere.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/reactive_complexes
2025-10-10T02:29:32,440   copying build/lib/scine_chemoton/utilities/reactive_complexes/adsorption.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/reactive_complexes
2025-10-10T02:29:32,444   copying build/lib/scine_chemoton/utilities/reactive_complexes/inter_reactive_complexes.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/utilities/reactive_complexes
2025-10-10T02:29:32,447   copying build/lib/scine_chemoton/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton
2025-10-10T02:29:32,450   copying build/lib/scine_chemoton/engine.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton
2025-10-10T02:29:32,453   copying build/lib/scine_chemoton/surface_main.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton
2025-10-10T02:29:32,457   creating build/bdist.linux-armv7l/wheel/scine_chemoton/steering_wheel
2025-10-10T02:29:32,458   copying build/lib/scine_chemoton/steering_wheel/result_transfer.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/steering_wheel
2025-10-10T02:29:32,461   copying build/lib/scine_chemoton/steering_wheel/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/steering_wheel
2025-10-10T02:29:32,465   creating build/bdist.linux-armv7l/wheel/scine_chemoton/steering_wheel/network_expansions
2025-10-10T02:29:32,467   copying build/lib/scine_chemoton/steering_wheel/network_expansions/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/steering_wheel/network_expansions
2025-10-10T02:29:32,470   copying build/lib/scine_chemoton/steering_wheel/network_expansions/conformers.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/steering_wheel/network_expansions
2025-10-10T02:29:32,472   copying build/lib/scine_chemoton/steering_wheel/network_expansions/reactions.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/steering_wheel/network_expansions
2025-10-10T02:29:32,475   copying build/lib/scine_chemoton/steering_wheel/network_expansions/basics.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/steering_wheel/network_expansions
2025-10-10T02:29:32,479   creating build/bdist.linux-armv7l/wheel/scine_chemoton/steering_wheel/selections
2025-10-10T02:29:32,480   copying build/lib/scine_chemoton/steering_wheel/selections/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/steering_wheel/selections
2025-10-10T02:29:32,484   copying build/lib/scine_chemoton/steering_wheel/selections/conformers.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/steering_wheel/selections
2025-10-10T02:29:32,487   copying build/lib/scine_chemoton/steering_wheel/selections/input_selections.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/steering_wheel/selections
2025-10-10T02:29:32,489   copying build/lib/scine_chemoton/steering_wheel/selections/organometallic_complexes.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/steering_wheel/selections
2025-10-10T02:29:32,492   copying build/lib/scine_chemoton/steering_wheel/selections/basics.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/steering_wheel/selections
2025-10-10T02:29:32,495   copying build/lib/scine_chemoton/steering_wheel/datastructures.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/steering_wheel
2025-10-10T02:29:32,498   copying build/lib/scine_chemoton/default_settings.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton
2025-10-10T02:29:32,501   creating build/bdist.linux-armv7l/wheel/scine_chemoton/gears
2025-10-10T02:29:32,503   copying build/lib/scine_chemoton/gears/pathfinder.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears
2025-10-10T02:29:32,507   copying build/lib/scine_chemoton/gears/kinetics.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears
2025-10-10T02:29:32,511   creating build/bdist.linux-armv7l/wheel/scine_chemoton/gears/conformers
2025-10-10T02:29:32,513   copying build/lib/scine_chemoton/gears/conformers/brute_force.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/conformers
2025-10-10T02:29:32,516   copying build/lib/scine_chemoton/gears/conformers/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/conformers
2025-10-10T02:29:32,518   copying build/lib/scine_chemoton/gears/single_point.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears
2025-10-10T02:29:32,521   copying build/lib/scine_chemoton/gears/compound.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears
2025-10-10T02:29:32,524   copying build/lib/scine_chemoton/gears/reaction.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears
2025-10-10T02:29:32,527   copying build/lib/scine_chemoton/gears/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears
2025-10-10T02:29:32,530   copying build/lib/scine_chemoton/gears/rerun_calculations.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears
2025-10-10T02:29:32,534   creating build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps
2025-10-10T02:29:32,535   copying build/lib/scine_chemoton/gears/elementary_steps/minimum_energy_conformer.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/elementary_steps
2025-10-10T02:29:32,538   copying build/lib/scine_chemoton/gears/elementary_steps/brute_force.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/elementary_steps
2025-10-10T02:29:32,541   copying build/lib/scine_chemoton/gears/elementary_steps/selected_structures.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/elementary_steps
2025-10-10T02:29:32,543   copying build/lib/scine_chemoton/gears/elementary_steps/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/elementary_steps
2025-10-10T02:29:32,547   copying build/lib/scine_chemoton/gears/elementary_steps/minimal.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/elementary_steps
2025-10-10T02:29:32,550   creating build/bdist.linux-armv7l/wheel/scine_chemoton/gears/elementary_steps/trial_generator
2025-10-10T02:29:32,551   copying build/lib/scine_chemoton/gears/elementary_steps/trial_generator/fragment_based.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/elementary_steps/trial_generator
2025-10-10T02:29:32,555   copying build/lib/scine_chemoton/gears/elementary_steps/trial_generator/fast_dissociations.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/elementary_steps/trial_generator
2025-10-10T02:29:32,558   copying build/lib/scine_chemoton/gears/elementary_steps/trial_generator/connectivity_analyzer.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/elementary_steps/trial_generator
2025-10-10T02:29:32,561   copying build/lib/scine_chemoton/gears/elementary_steps/trial_generator/adsorptions.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/elementary_steps/trial_generator
2025-10-10T02:29:32,564   copying build/lib/scine_chemoton/gears/elementary_steps/trial_generator/bond_based.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/elementary_steps/trial_generator
2025-10-10T02:29:32,568   copying build/lib/scine_chemoton/gears/elementary_steps/trial_generator/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/elementary_steps/trial_generator
2025-10-10T02:29:32,571   copying build/lib/scine_chemoton/gears/elementary_steps/trial_generator/template_based.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/elementary_steps/trial_generator
2025-10-10T02:29:32,575   creating build/bdist.linux-armv7l/wheel/scine_chemoton/gears/network_refinement
2025-10-10T02:29:32,576   copying build/lib/scine_chemoton/gears/network_refinement/reaction_based_refinement.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/network_refinement
2025-10-10T02:29:32,579   copying build/lib/scine_chemoton/gears/network_refinement/enabling.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/network_refinement
2025-10-10T02:29:32,582   copying build/lib/scine_chemoton/gears/network_refinement/refinement.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/network_refinement
2025-10-10T02:29:32,586   creating build/bdist.linux-armv7l/wheel/scine_chemoton/gears/network_refinement/structure_refinement
2025-10-10T02:29:32,587   copying build/lib/scine_chemoton/gears/network_refinement/structure_refinement/minimum_structure_reoptimization.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/network_refinement/structure_refinement
2025-10-10T02:29:32,589   copying build/lib/scine_chemoton/gears/network_refinement/structure_refinement/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/network_refinement/structure_refinement
2025-10-10T02:29:32,592   copying build/lib/scine_chemoton/gears/network_refinement/structure_refinement/ts_refinement.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/network_refinement/structure_refinement
2025-10-10T02:29:32,594   copying build/lib/scine_chemoton/gears/network_refinement/disabling.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/network_refinement
2025-10-10T02:29:32,597   copying build/lib/scine_chemoton/gears/network_refinement/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/network_refinement
2025-10-10T02:29:32,599   copying build/lib/scine_chemoton/gears/network_refinement/aggregate_based_refinement.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/network_refinement
2025-10-10T02:29:32,601   copying build/lib/scine_chemoton/gears/network_refinement/calculation_based_refinement.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/network_refinement
2025-10-10T02:29:32,604   copying build/lib/scine_chemoton/gears/thermo.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears
2025-10-10T02:29:32,607   creating build/bdist.linux-armv7l/wheel/scine_chemoton/gears/kinetic_modeling
2025-10-10T02:29:32,608   copying build/lib/scine_chemoton/gears/kinetic_modeling/prepare_kinetic_modeling_job.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/kinetic_modeling
2025-10-10T02:29:32,610   copying build/lib/scine_chemoton/gears/kinetic_modeling/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/kinetic_modeling
2025-10-10T02:29:32,613   copying build/lib/scine_chemoton/gears/kinetic_modeling/atomization.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/kinetic_modeling
2025-10-10T02:29:32,616   copying build/lib/scine_chemoton/gears/kinetic_modeling/rms_microcanonical_kinetic_modeling.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/kinetic_modeling
2025-10-10T02:29:32,618   copying build/lib/scine_chemoton/gears/kinetic_modeling/rms_network_extractor.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/kinetic_modeling
2025-10-10T02:29:32,620   copying build/lib/scine_chemoton/gears/kinetic_modeling/rms_kinetic_modeling.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/kinetic_modeling
2025-10-10T02:29:32,623   copying build/lib/scine_chemoton/gears/kinetic_modeling/kinetx_kinetic_modeling.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears/kinetic_modeling
2025-10-10T02:29:32,625   copying build/lib/scine_chemoton/gears/scheduler.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/gears
2025-10-10T02:29:32,627   copying build/lib/scine_chemoton/_version.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton
2025-10-10T02:29:32,629   copying build/lib/scine_chemoton/__main__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton
2025-10-10T02:29:32,632   creating build/bdist.linux-armv7l/wheel/scine_chemoton/resources
2025-10-10T02:29:32,633   copying build/lib/scine_chemoton/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/resources
2025-10-10T02:29:32,635   copying build/lib/scine_chemoton/resources/methanol.xyz -> build/bdist.linux-armv7l/wheel/./scine_chemoton/resources
2025-10-10T02:29:32,637   copying build/lib/scine_chemoton/resources/formaldehyde.xyz -> build/bdist.linux-armv7l/wheel/./scine_chemoton/resources
2025-10-10T02:29:32,639   creating build/bdist.linux-armv7l/wheel/scine_chemoton/filters
2025-10-10T02:29:32,640   copying build/lib/scine_chemoton/filters/reactive_site_filters.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/filters
2025-10-10T02:29:32,644   copying build/lib/scine_chemoton/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/filters
2025-10-10T02:29:32,646   copying build/lib/scine_chemoton/filters/elementary_step_filters.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/filters
2025-10-10T02:29:32,648   copying build/lib/scine_chemoton/filters/aggregate_filters.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/filters
2025-10-10T02:29:32,652   copying build/lib/scine_chemoton/filters/structure_filters.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/filters
2025-10-10T02:29:32,654   copying build/lib/scine_chemoton/filters/further_exploration_filters.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/filters
2025-10-10T02:29:32,657   copying build/lib/scine_chemoton/filters/reaction_filters.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/filters
2025-10-10T02:29:32,660   creating build/bdist.linux-armv7l/wheel/scine_chemoton/reaction_rules
2025-10-10T02:29:32,661   copying build/lib/scine_chemoton/reaction_rules/distance_rules.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/reaction_rules
2025-10-10T02:29:32,664   copying build/lib/scine_chemoton/reaction_rules/polarization_rules.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/reaction_rules
2025-10-10T02:29:32,667   copying build/lib/scine_chemoton/reaction_rules/element_rules.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/reaction_rules
2025-10-10T02:29:32,669   copying build/lib/scine_chemoton/reaction_rules/__init__.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/reaction_rules
2025-10-10T02:29:32,671   copying build/lib/scine_chemoton/reaction_rules/reaction_rule_library.py -> build/bdist.linux-armv7l/wheel/./scine_chemoton/reaction_rules
2025-10-10T02:29:32,673   running install_egg_info
2025-10-10T02:29:32,710   Copying scine_chemoton.egg-info to build/bdist.linux-armv7l/wheel/./scine_chemoton-4.1.0-py3.11.egg-info
2025-10-10T02:29:32,724   running install_scripts
2025-10-10T02:29:32,738   creating build/bdist.linux-armv7l/wheel/scine_chemoton-4.1.0.dist-info/WHEEL
2025-10-10T02:29:32,740   creating '/tmp/pip-wheel-5woizznt/scine_chemoton-4.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-10-10T02:29:32,743   adding 'scine_chemoton/__init__.py'
2025-10-10T02:29:32,746   adding 'scine_chemoton/__main__.py'
2025-10-10T02:29:32,747   adding 'scine_chemoton/_version.py'
2025-10-10T02:29:32,749   adding 'scine_chemoton/default_settings.py'
2025-10-10T02:29:32,750   adding 'scine_chemoton/engine.py'
2025-10-10T02:29:32,753   adding 'scine_chemoton/surface_main.py'
2025-10-10T02:29:32,755   adding 'scine_chemoton/filters/__init__.py'
2025-10-10T02:29:32,762   adding 'scine_chemoton/filters/aggregate_filters.py'
2025-10-10T02:29:32,764   adding 'scine_chemoton/filters/elementary_step_filters.py'
2025-10-10T02:29:32,766   adding 'scine_chemoton/filters/further_exploration_filters.py'
2025-10-10T02:29:32,769   adding 'scine_chemoton/filters/reaction_filters.py'
2025-10-10T02:29:32,775   adding 'scine_chemoton/filters/reactive_site_filters.py'
2025-10-10T02:29:32,778   adding 'scine_chemoton/filters/structure_filters.py'
2025-10-10T02:29:32,781   adding 'scine_chemoton/gears/__init__.py'
2025-10-10T02:29:32,784   adding 'scine_chemoton/gears/compound.py'
2025-10-10T02:29:32,789   adding 'scine_chemoton/gears/kinetics.py'
2025-10-10T02:29:32,800   adding 'scine_chemoton/gears/pathfinder.py'
2025-10-10T02:29:32,803   adding 'scine_chemoton/gears/reaction.py'
2025-10-10T02:29:32,805   adding 'scine_chemoton/gears/rerun_calculations.py'
2025-10-10T02:29:32,807   adding 'scine_chemoton/gears/scheduler.py'
2025-10-10T02:29:32,809   adding 'scine_chemoton/gears/single_point.py'
2025-10-10T02:29:32,811   adding 'scine_chemoton/gears/thermo.py'
2025-10-10T02:29:32,813   adding 'scine_chemoton/gears/conformers/__init__.py'
2025-10-10T02:29:32,815   adding 'scine_chemoton/gears/conformers/brute_force.py'
2025-10-10T02:29:32,819   adding 'scine_chemoton/gears/elementary_steps/__init__.py'
2025-10-10T02:29:32,820   adding 'scine_chemoton/gears/elementary_steps/brute_force.py'
2025-10-10T02:29:32,822   adding 'scine_chemoton/gears/elementary_steps/minimal.py'
2025-10-10T02:29:32,823   adding 'scine_chemoton/gears/elementary_steps/minimum_energy_conformer.py'
2025-10-10T02:29:32,825   adding 'scine_chemoton/gears/elementary_steps/selected_structures.py'
2025-10-10T02:29:32,827   adding 'scine_chemoton/gears/elementary_steps/trial_generator/__init__.py'
2025-10-10T02:29:32,829   adding 'scine_chemoton/gears/elementary_steps/trial_generator/adsorptions.py'
2025-10-10T02:29:32,835   adding 'scine_chemoton/gears/elementary_steps/trial_generator/bond_based.py'
2025-10-10T02:29:32,837   adding 'scine_chemoton/gears/elementary_steps/trial_generator/connectivity_analyzer.py'
2025-10-10T02:29:32,840   adding 'scine_chemoton/gears/elementary_steps/trial_generator/fast_dissociations.py'
2025-10-10T02:29:32,845   adding 'scine_chemoton/gears/elementary_steps/trial_generator/fragment_based.py'
2025-10-10T02:29:32,848   adding 'scine_chemoton/gears/elementary_steps/trial_generator/template_based.py'
2025-10-10T02:29:32,852   adding 'scine_chemoton/gears/kinetic_modeling/__init__.py'
2025-10-10T02:29:32,854   adding 'scine_chemoton/gears/kinetic_modeling/atomization.py'
2025-10-10T02:29:32,855   adding 'scine_chemoton/gears/kinetic_modeling/kinetx_kinetic_modeling.py'
2025-10-10T02:29:32,858   adding 'scine_chemoton/gears/kinetic_modeling/prepare_kinetic_modeling_job.py'
2025-10-10T02:29:32,860   adding 'scine_chemoton/gears/kinetic_modeling/rms_kinetic_modeling.py'
2025-10-10T02:29:32,862   adding 'scine_chemoton/gears/kinetic_modeling/rms_microcanonical_kinetic_modeling.py'
2025-10-10T02:29:32,864   adding 'scine_chemoton/gears/kinetic_modeling/rms_network_extractor.py'
2025-10-10T02:29:32,866   adding 'scine_chemoton/gears/network_refinement/__init__.py'
2025-10-10T02:29:32,868   adding 'scine_chemoton/gears/network_refinement/aggregate_based_refinement.py'
2025-10-10T02:29:32,869   adding 'scine_chemoton/gears/network_refinement/calculation_based_refinement.py'
2025-10-10T02:29:32,871   adding 'scine_chemoton/gears/network_refinement/disabling.py'
2025-10-10T02:29:32,873   adding 'scine_chemoton/gears/network_refinement/enabling.py'
2025-10-10T02:29:32,875   adding 'scine_chemoton/gears/network_refinement/reaction_based_refinement.py'
2025-10-10T02:29:32,880   adding 'scine_chemoton/gears/network_refinement/refinement.py'
2025-10-10T02:29:32,882   adding 'scine_chemoton/gears/network_refinement/structure_refinement/__init__.py'
2025-10-10T02:29:32,884   adding 'scine_chemoton/gears/network_refinement/structure_refinement/minimum_structure_reoptimization.py'
2025-10-10T02:29:32,886   adding 'scine_chemoton/gears/network_refinement/structure_refinement/ts_refinement.py'
2025-10-10T02:29:32,888   adding 'scine_chemoton/reaction_rules/__init__.py'
2025-10-10T02:29:32,890   adding 'scine_chemoton/reaction_rules/distance_rules.py'
2025-10-10T02:29:32,892   adding 'scine_chemoton/reaction_rules/element_rules.py'
2025-10-10T02:29:32,893   adding 'scine_chemoton/reaction_rules/polarization_rules.py'
2025-10-10T02:29:32,895   adding 'scine_chemoton/reaction_rules/reaction_rule_library.py'
2025-10-10T02:29:32,897   adding 'scine_chemoton/resources/__init__.py'
2025-10-10T02:29:32,898   adding 'scine_chemoton/resources/formaldehyde.xyz'
2025-10-10T02:29:32,900   adding 'scine_chemoton/resources/methanol.xyz'
2025-10-10T02:29:32,907   adding 'scine_chemoton/steering_wheel/__init__.py'
2025-10-10T02:29:32,910   adding 'scine_chemoton/steering_wheel/datastructures.py'
2025-10-10T02:29:32,911   adding 'scine_chemoton/steering_wheel/result_transfer.py'
2025-10-10T02:29:32,917   adding 'scine_chemoton/steering_wheel/network_expansions/__init__.py'
2025-10-10T02:29:32,919   adding 'scine_chemoton/steering_wheel/network_expansions/basics.py'
2025-10-10T02:29:32,921   adding 'scine_chemoton/steering_wheel/network_expansions/conformers.py'
2025-10-10T02:29:32,923   adding 'scine_chemoton/steering_wheel/network_expansions/reactions.py'
2025-10-10T02:29:32,926   adding 'scine_chemoton/steering_wheel/selections/__init__.py'
2025-10-10T02:29:32,927   adding 'scine_chemoton/steering_wheel/selections/basics.py'
2025-10-10T02:29:32,929   adding 'scine_chemoton/steering_wheel/selections/conformers.py'
2025-10-10T02:29:32,931   adding 'scine_chemoton/steering_wheel/selections/input_selections.py'
2025-10-10T02:29:32,933   adding 'scine_chemoton/steering_wheel/selections/organometallic_complexes.py'
2025-10-10T02:29:32,935   adding 'scine_chemoton/utilities/__init__.py'
2025-10-10T02:29:32,936   adding 'scine_chemoton/utilities/calculation_creation_helpers.py'
2025-10-10T02:29:32,938   adding 'scine_chemoton/utilities/comparisons.py'
2025-10-10T02:29:32,941   adding 'scine_chemoton/utilities/datastructure_transfer.py'
2025-10-10T02:29:32,942   adding 'scine_chemoton/utilities/get_molecular_formula.py'
2025-10-10T02:29:32,944   adding 'scine_chemoton/utilities/insert_initial_structure.py'
2025-10-10T02:29:32,946   adding 'scine_chemoton/utilities/masm.py'
2025-10-10T02:29:32,947   adding 'scine_chemoton/utilities/model_combinations.py'
2025-10-10T02:29:32,949   adding 'scine_chemoton/utilities/options.py'
2025-10-10T02:29:32,950   adding 'scine_chemoton/utilities/place_holder_model.py'
2025-10-10T02:29:32,952   adding 'scine_chemoton/utilities/uncertainties.py'
2025-10-10T02:29:32,953   adding 'scine_chemoton/utilities/warnings.py'
2025-10-10T02:29:32,955   adding 'scine_chemoton/utilities/db_object_wrappers/__init__.py'
2025-10-10T02:29:32,956   adding 'scine_chemoton/utilities/db_object_wrappers/aggregate_cache.py'
2025-10-10T02:29:32,958   adding 'scine_chemoton/utilities/db_object_wrappers/aggregate_wrapper.py'
2025-10-10T02:29:32,960   adding 'scine_chemoton/utilities/db_object_wrappers/ensemble_wrapper.py'
2025-10-10T02:29:32,961   adding 'scine_chemoton/utilities/db_object_wrappers/reaction_cache.py'
2025-10-10T02:29:32,964   adding 'scine_chemoton/utilities/db_object_wrappers/reaction_wrapper.py'
2025-10-10T02:29:32,966   adding 'scine_chemoton/utilities/db_object_wrappers/thermodynamic_properties.py'
2025-10-10T02:29:32,968   adding 'scine_chemoton/utilities/db_object_wrappers/wrapper_caches.py'
2025-10-10T02:29:32,970   adding 'scine_chemoton/utilities/kinetics/__init__.py'
2025-10-10T02:29:32,971   adding 'scine_chemoton/utilities/kinetics/eckart_tunneling.py'
2025-10-10T02:29:32,973   adding 'scine_chemoton/utilities/reactive_complexes/__init__.py'
2025-10-10T02:29:32,983   adding 'scine_chemoton/utilities/reactive_complexes/adsorption.py'
2025-10-10T02:29:32,989   adding 'scine_chemoton/utilities/reactive_complexes/inter_reactive_complexes.py'
2025-10-10T02:29:33,073   adding 'scine_chemoton/utilities/reactive_complexes/lebedev_sphere.py'
2025-10-10T02:29:33,078   adding 'scine_chemoton/utilities/reactive_complexes/unit_circle.py'
2025-10-10T02:29:33,080   adding 'scine_chemoton/utilities/surfaces/__init__.py'
2025-10-10T02:29:33,081   adding 'scine_chemoton/utilities/surfaces/cohesive_energies.py'
2025-10-10T02:29:33,084   adding 'scine_chemoton/utilities/surfaces/periodic_utils.py'
2025-10-10T02:29:33,086   adding 'scine_chemoton/utilities/surfaces/property_names.py'
2025-10-10T02:29:33,089   adding 'scine_chemoton/utilities/surfaces/pymatgen_interface.py'
2025-10-10T02:29:33,092   adding 'scine_chemoton-4.1.0.dist-info/licenses/LICENSE.txt'
2025-10-10T02:29:33,094   adding 'scine_chemoton-4.1.0.dist-info/METADATA'
2025-10-10T02:29:33,095   adding 'scine_chemoton-4.1.0.dist-info/WHEEL'
2025-10-10T02:29:33,096   adding 'scine_chemoton-4.1.0.dist-info/entry_points.txt'
2025-10-10T02:29:33,097   adding 'scine_chemoton-4.1.0.dist-info/top_level.txt'
2025-10-10T02:29:33,099   adding 'scine_chemoton-4.1.0.dist-info/RECORD'
2025-10-10T02:29:33,108   removing build/bdist.linux-armv7l/wheel
2025-10-10T02:29:33,269   Building wheel for scine-chemoton (setup.py): finished with status 'done'
2025-10-10T02:29:33,277   Created wheel for scine-chemoton: filename=scine_chemoton-4.1.0-py3-none-any.whl size=453984 sha256=fba8713b19f62efd00725ba62d62057786d5b2afa0afee9b8b201aaf5e89e67c
2025-10-10T02:29:33,278   Stored in directory: /tmp/pip-ephem-wheel-cache-v1vhp6no/wheels/7e/0e/39/643923af3ceb459f49d80470bf9312d14239496e0b0d4d2346
2025-10-10T02:29:33,295 Successfully built scine-chemoton
2025-10-10T02:29:33,321 Removed build tracker: '/tmp/pip-build-tracker-5skd4in2'