2025-10-11T03:59:53,645 Created temporary directory: /tmp/pip-ephem-wheel-cache-hm0fwnx2 2025-10-11T03:59:53,647 Created temporary directory: /tmp/pip-build-tracker-h5e81b5g 2025-10-11T03:59:53,648 Initialized build tracking at /tmp/pip-build-tracker-h5e81b5g 2025-10-11T03:59:53,648 Created build tracker: /tmp/pip-build-tracker-h5e81b5g 2025-10-11T03:59:53,649 Entered build tracker: /tmp/pip-build-tracker-h5e81b5g 2025-10-11T03:59:53,649 Created temporary directory: /tmp/pip-wheel-am1ptr8t 2025-10-11T03:59:53,652 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-11T03:59:53,655 Created temporary directory: /tmp/pip-ephem-wheel-cache-y3hnxct_ 2025-10-11T03:59:53,677 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-11T03:59:53,680 2 location(s) to search for versions of automorphotrack: 2025-10-11T03:59:53,680 * https://pypi.org/simple/automorphotrack/ 2025-10-11T03:59:53,680 * https://www.piwheels.org/simple/automorphotrack/ 2025-10-11T03:59:53,681 Fetching project page and analyzing links: https://pypi.org/simple/automorphotrack/ 2025-10-11T03:59:53,682 Getting page https://pypi.org/simple/automorphotrack/ 2025-10-11T03:59:53,683 Found index url https://pypi.org/simple 2025-10-11T03:59:53,897 Fetched page https://pypi.org/simple/automorphotrack/ as application/vnd.pypi.simple.v1+json 2025-10-11T03:59:53,898 Skipping link: No binaries permitted for automorphotrack: https://files.pythonhosted.org/packages/07/76/7ed16ee4e7915539ecdaf863830495610ee6c4a075b1e35da95d4e758e72/AutoMorphoTrack-1.0.0-py3-none-any.whl (from https://pypi.org/simple/automorphotrack/) (requires-python:>=3.9) 2025-10-11T03:59:53,899 Found link https://files.pythonhosted.org/packages/16/8a/039014d575bcba42961419f4014a907b1b22c7dc5abe6991b40c02f96530/AutoMorphoTrack-1.0.0.tar.gz (from https://pypi.org/simple/automorphotrack/) (requires-python:>=3.9), version: 1.0.0 2025-10-11T03:59:53,900 Skipping link: No binaries permitted for automorphotrack: https://files.pythonhosted.org/packages/65/81/e83d4fd743032f0849fe18c0f2cdbd7bb26a0d77bb53eb2f08e8548a306d/automorphotrack-1.0.5-py3-none-any.whl (from https://pypi.org/simple/automorphotrack/) (requires-python:>=3.9) 2025-10-11T03:59:53,901 Found link https://files.pythonhosted.org/packages/22/92/9c0273d9ed1abd0d29864432161e7176d4cd0e3fc73f6855995e62b2b60f/automorphotrack-1.0.5.tar.gz (from https://pypi.org/simple/automorphotrack/) (requires-python:>=3.9), version: 1.0.5 2025-10-11T03:59:53,902 Fetching project page and analyzing links: https://www.piwheels.org/simple/automorphotrack/ 2025-10-11T03:59:53,903 Getting page https://www.piwheels.org/simple/automorphotrack/ 2025-10-11T03:59:53,904 Found index url https://www.piwheels.org/simple 2025-10-11T03:59:54,065 Fetched page https://www.piwheels.org/simple/automorphotrack/ as text/html 2025-10-11T03:59:54,066 Skipping link: not a file: https://www.piwheels.org/simple/automorphotrack/ 2025-10-11T03:59:54,066 Skipping link: not a file: https://pypi.org/simple/automorphotrack/ 2025-10-11T03:59:54,085 Given no hashes to check 1 links for project 'automorphotrack': discarding no candidates 2025-10-11T03:59:54,103 Collecting automorphotrack==1.0.0 2025-10-11T03:59:54,105 Created temporary directory: /tmp/pip-unpack-_oczv6tu 2025-10-11T03:59:54,318 Downloading AutoMorphoTrack-1.0.0.tar.gz (13 kB) 2025-10-11T03:59:54,365 Added automorphotrack==1.0.0 from https://files.pythonhosted.org/packages/16/8a/039014d575bcba42961419f4014a907b1b22c7dc5abe6991b40c02f96530/AutoMorphoTrack-1.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-h5e81b5g' 2025-10-11T03:59:54,366 Running setup.py (path:/tmp/pip-wheel-am1ptr8t/automorphotrack_b2614140e147418b9f7446cbfe75d551/setup.py) egg_info for package automorphotrack 2025-10-11T03:59:54,367 Created temporary directory: /tmp/pip-pip-egg-info-_l0o3_yv 2025-10-11T03:59:54,368 Preparing metadata (setup.py): started 2025-10-11T03:59:54,370 Running command python setup.py egg_info 2025-10-11T03:59:55,231 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-11T03:59:55,231 !! 2025-10-11T03:59:55,232 ******************************************************************************** 2025-10-11T03:59:55,232 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-11T03:59:55,233 License :: OSI Approved :: MIT License 2025-10-11T03:59:55,234 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-11T03:59:55,235 ******************************************************************************** 2025-10-11T03:59:55,236 !! 2025-10-11T03:59:55,236 self._finalize_license_expression() 2025-10-11T03:59:55,259 running egg_info 2025-10-11T03:59:55,286 creating /tmp/pip-pip-egg-info-_l0o3_yv/AutoMorphoTrack.egg-info 2025-10-11T03:59:55,287 writing /tmp/pip-pip-egg-info-_l0o3_yv/AutoMorphoTrack.egg-info/PKG-INFO 2025-10-11T03:59:55,291 writing dependency_links to /tmp/pip-pip-egg-info-_l0o3_yv/AutoMorphoTrack.egg-info/dependency_links.txt 2025-10-11T03:59:55,293 writing requirements to /tmp/pip-pip-egg-info-_l0o3_yv/AutoMorphoTrack.egg-info/requires.txt 2025-10-11T03:59:55,294 writing top-level names to /tmp/pip-pip-egg-info-_l0o3_yv/AutoMorphoTrack.egg-info/top_level.txt 2025-10-11T03:59:55,295 writing manifest file '/tmp/pip-pip-egg-info-_l0o3_yv/AutoMorphoTrack.egg-info/SOURCES.txt' 2025-10-11T03:59:55,381 reading manifest file '/tmp/pip-pip-egg-info-_l0o3_yv/AutoMorphoTrack.egg-info/SOURCES.txt' 2025-10-11T03:59:55,383 reading manifest template 'MANIFEST.in' 2025-10-11T03:59:55,384 warning: no files found matching 'LICENSE' 2025-10-11T03:59:55,384 warning: no files found matching 'requirements.txt' 2025-10-11T03:59:55,395 warning: no files found matching '*.csv' under directory 'automorphotrack' 2025-10-11T03:59:55,400 warning: no files found matching '*.txt' under directory 'automorphotrack' 2025-10-11T03:59:55,405 warning: no files found matching '*.ipynb' under directory 'automorphotrack' 2025-10-11T03:59:55,410 warning: no files found matching '*.png' under directory 'automorphotrack' 2025-10-11T03:59:55,415 warning: no files found matching '*.jpg' under directory 'automorphotrack' 2025-10-11T03:59:55,420 warning: no files found matching '*.tif' under directory 'automorphotrack' 2025-10-11T03:59:55,425 warning: no files found matching '*.json' under directory 'automorphotrack' 2025-10-11T03:59:55,426 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2025-10-11T03:59:55,426 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2025-10-11T03:59:55,427 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2025-10-11T03:59:55,430 writing manifest file '/tmp/pip-pip-egg-info-_l0o3_yv/AutoMorphoTrack.egg-info/SOURCES.txt' 2025-10-11T03:59:55,534 Preparing metadata (setup.py): finished with status 'done' 2025-10-11T03:59:55,539 Source in /tmp/pip-wheel-am1ptr8t/automorphotrack_b2614140e147418b9f7446cbfe75d551 has version 1.0.0, which satisfies requirement automorphotrack==1.0.0 from https://files.pythonhosted.org/packages/16/8a/039014d575bcba42961419f4014a907b1b22c7dc5abe6991b40c02f96530/AutoMorphoTrack-1.0.0.tar.gz 2025-10-11T03:59:55,540 Removed automorphotrack==1.0.0 from https://files.pythonhosted.org/packages/16/8a/039014d575bcba42961419f4014a907b1b22c7dc5abe6991b40c02f96530/AutoMorphoTrack-1.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-h5e81b5g' 2025-10-11T03:59:55,546 Created temporary directory: /tmp/pip-unpack-8bykk9re 2025-10-11T03:59:55,547 Building wheels for collected packages: automorphotrack 2025-10-11T03:59:55,552 Created temporary directory: /tmp/pip-wheel-u7p1dsct 2025-10-11T03:59:55,553 Building wheel for automorphotrack (setup.py): started 2025-10-11T03:59:55,554 Destination directory: /tmp/pip-wheel-u7p1dsct 2025-10-11T03:59:55,555 Running command python setup.py bdist_wheel 2025-10-11T03:59:56,374 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-11T03:59:56,374 !! 2025-10-11T03:59:56,376 ******************************************************************************** 2025-10-11T03:59:56,376 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-11T03:59:56,377 License :: OSI Approved :: MIT License 2025-10-11T03:59:56,378 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-11T03:59:56,379 ******************************************************************************** 2025-10-11T03:59:56,380 !! 2025-10-11T03:59:56,380 self._finalize_license_expression() 2025-10-11T03:59:56,381 running bdist_wheel 2025-10-11T03:59:56,508 running build 2025-10-11T03:59:56,509 running build_py 2025-10-11T03:59:56,539 creating build/lib/automorphotrack 2025-10-11T03:59:56,541 copying automorphotrack/shape_profiling.py -> build/lib/automorphotrack 2025-10-11T03:59:56,543 copying automorphotrack/lyso_count.py -> build/lib/automorphotrack 2025-10-11T03:59:56,545 copying automorphotrack/detection.py -> build/lib/automorphotrack 2025-10-11T03:59:56,547 copying automorphotrack/shape_features.py -> build/lib/automorphotrack 2025-10-11T03:59:56,549 copying automorphotrack/tracking.py -> build/lib/automorphotrack 2025-10-11T03:59:56,552 copying automorphotrack/tracking_overlay.py -> build/lib/automorphotrack 2025-10-11T03:59:56,554 copying automorphotrack/__init__.py -> build/lib/automorphotrack 2025-10-11T03:59:56,556 copying automorphotrack/morphology.py -> build/lib/automorphotrack 2025-10-11T03:59:56,558 copying automorphotrack/colocalization.py -> build/lib/automorphotrack 2025-10-11T03:59:56,560 copying automorphotrack/summary.py -> build/lib/automorphotrack 2025-10-11T03:59:56,562 copying automorphotrack/motility.py -> build/lib/automorphotrack 2025-10-11T03:59:56,564 copying automorphotrack/utils.py -> build/lib/automorphotrack 2025-10-11T03:59:56,566 running egg_info 2025-10-11T03:59:56,593 writing AutoMorphoTrack.egg-info/PKG-INFO 2025-10-11T03:59:56,596 writing dependency_links to AutoMorphoTrack.egg-info/dependency_links.txt 2025-10-11T03:59:56,598 writing requirements to AutoMorphoTrack.egg-info/requires.txt 2025-10-11T03:59:56,600 writing top-level names to AutoMorphoTrack.egg-info/top_level.txt 2025-10-11T03:59:56,629 reading manifest file 'AutoMorphoTrack.egg-info/SOURCES.txt' 2025-10-11T03:59:56,632 reading manifest template 'MANIFEST.in' 2025-10-11T03:59:56,633 warning: no files found matching 'LICENSE' 2025-10-11T03:59:56,634 warning: no files found matching 'requirements.txt' 2025-10-11T03:59:56,643 warning: no files found matching '*.csv' under directory 'automorphotrack' 2025-10-11T03:59:56,647 warning: no files found matching '*.txt' under directory 'automorphotrack' 2025-10-11T03:59:56,652 warning: no files found matching '*.ipynb' under directory 'automorphotrack' 2025-10-11T03:59:56,657 warning: no files found matching '*.png' under directory 'automorphotrack' 2025-10-11T03:59:56,662 warning: no files found matching '*.jpg' under directory 'automorphotrack' 2025-10-11T03:59:56,666 warning: no files found matching '*.tif' under directory 'automorphotrack' 2025-10-11T03:59:56,671 warning: no files found matching '*.json' under directory 'automorphotrack' 2025-10-11T03:59:56,672 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2025-10-11T03:59:56,673 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2025-10-11T03:59:56,673 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2025-10-11T03:59:56,676 writing manifest file 'AutoMorphoTrack.egg-info/SOURCES.txt' 2025-10-11T03:59:56,705 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-10-11T03:59:56,706 !! 2025-10-11T03:59:56,707 ******************************************************************************** 2025-10-11T03:59:56,707 Please avoid running ``setup.py`` directly. 2025-10-11T03:59:56,708 Instead, use pypa/build, pypa/installer or other 2025-10-11T03:59:56,708 standards-based tools. 2025-10-11T03:59:56,709 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-10-11T03:59:56,710 or your builds will no longer be supported. 2025-10-11T03:59:56,711 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-10-11T03:59:56,711 ******************************************************************************** 2025-10-11T03:59:56,712 !! 2025-10-11T03:59:56,712 self.initialize_options() 2025-10-11T03:59:56,733 installing to build/bdist.linux-armv7l/wheel 2025-10-11T03:59:56,734 running install 2025-10-11T03:59:56,758 running install_lib 2025-10-11T03:59:56,785 creating build/bdist.linux-armv7l/wheel 2025-10-11T03:59:56,787 creating build/bdist.linux-armv7l/wheel/automorphotrack 2025-10-11T03:59:56,788 copying build/lib/automorphotrack/shape_profiling.py -> build/bdist.linux-armv7l/wheel/./automorphotrack 2025-10-11T03:59:56,790 copying build/lib/automorphotrack/lyso_count.py -> build/bdist.linux-armv7l/wheel/./automorphotrack 2025-10-11T03:59:56,792 copying build/lib/automorphotrack/detection.py -> build/bdist.linux-armv7l/wheel/./automorphotrack 2025-10-11T03:59:56,793 copying build/lib/automorphotrack/shape_features.py -> build/bdist.linux-armv7l/wheel/./automorphotrack 2025-10-11T03:59:56,795 copying build/lib/automorphotrack/tracking.py -> build/bdist.linux-armv7l/wheel/./automorphotrack 2025-10-11T03:59:56,798 copying build/lib/automorphotrack/tracking_overlay.py -> build/bdist.linux-armv7l/wheel/./automorphotrack 2025-10-11T03:59:56,800 copying build/lib/automorphotrack/__init__.py -> build/bdist.linux-armv7l/wheel/./automorphotrack 2025-10-11T03:59:56,802 copying build/lib/automorphotrack/morphology.py -> build/bdist.linux-armv7l/wheel/./automorphotrack 2025-10-11T03:59:56,804 copying build/lib/automorphotrack/colocalization.py -> build/bdist.linux-armv7l/wheel/./automorphotrack 2025-10-11T03:59:56,806 copying build/lib/automorphotrack/summary.py -> build/bdist.linux-armv7l/wheel/./automorphotrack 2025-10-11T03:59:56,808 copying build/lib/automorphotrack/motility.py -> build/bdist.linux-armv7l/wheel/./automorphotrack 2025-10-11T03:59:56,810 copying build/lib/automorphotrack/utils.py -> build/bdist.linux-armv7l/wheel/./automorphotrack 2025-10-11T03:59:56,812 running install_egg_info 2025-10-11T03:59:56,847 Copying AutoMorphoTrack.egg-info to build/bdist.linux-armv7l/wheel/./AutoMorphoTrack-1.0.0-py3.11.egg-info 2025-10-11T03:59:56,856 running install_scripts 2025-10-11T03:59:56,866 creating build/bdist.linux-armv7l/wheel/automorphotrack-1.0.0.dist-info/WHEEL 2025-10-11T03:59:56,868 creating '/tmp/pip-wheel-u7p1dsct/automorphotrack-1.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-10-11T03:59:56,870 adding 'automorphotrack/__init__.py' 2025-10-11T03:59:56,872 adding 'automorphotrack/colocalization.py' 2025-10-11T03:59:56,874 adding 'automorphotrack/detection.py' 2025-10-11T03:59:56,876 adding 'automorphotrack/lyso_count.py' 2025-10-11T03:59:56,877 adding 'automorphotrack/morphology.py' 2025-10-11T03:59:56,879 adding 'automorphotrack/motility.py' 2025-10-11T03:59:56,880 adding 'automorphotrack/shape_features.py' 2025-10-11T03:59:56,882 adding 'automorphotrack/shape_profiling.py' 2025-10-11T03:59:56,883 adding 'automorphotrack/summary.py' 2025-10-11T03:59:56,885 adding 'automorphotrack/tracking.py' 2025-10-11T03:59:56,886 adding 'automorphotrack/tracking_overlay.py' 2025-10-11T03:59:56,887 adding 'automorphotrack/utils.py' 2025-10-11T03:59:56,890 adding 'automorphotrack-1.0.0.dist-info/METADATA' 2025-10-11T03:59:56,890 adding 'automorphotrack-1.0.0.dist-info/WHEEL' 2025-10-11T03:59:56,891 adding 'automorphotrack-1.0.0.dist-info/top_level.txt' 2025-10-11T03:59:56,892 adding 'automorphotrack-1.0.0.dist-info/RECORD' 2025-10-11T03:59:56,893 removing build/bdist.linux-armv7l/wheel 2025-10-11T03:59:57,004 Building wheel for automorphotrack (setup.py): finished with status 'done' 2025-10-11T03:59:57,006 Created wheel for automorphotrack: filename=automorphotrack-1.0.0-py3-none-any.whl size=20749 sha256=34b51204e965847d83c37cf210d4243c4edccc13943e2d06702a95aa32ece02b 2025-10-11T03:59:57,007 Stored in directory: /tmp/pip-ephem-wheel-cache-y3hnxct_/wheels/d3/98/4e/8e98441dd764962d76bf26f63a54eefe7b3ad7bdbeae32f7a4 2025-10-11T03:59:57,018 Successfully built automorphotrack 2025-10-11T03:59:57,022 Removed build tracker: '/tmp/pip-build-tracker-h5e81b5g'