2025-10-14T05:39:14,244 Created temporary directory: /tmp/pip-ephem-wheel-cache-aswmnwet
2025-10-14T05:39:14,245 Created temporary directory: /tmp/pip-build-tracker-kyczs9tc
2025-10-14T05:39:14,246 Initialized build tracking at /tmp/pip-build-tracker-kyczs9tc
2025-10-14T05:39:14,247 Created build tracker: /tmp/pip-build-tracker-kyczs9tc
2025-10-14T05:39:14,247 Entered build tracker: /tmp/pip-build-tracker-kyczs9tc
2025-10-14T05:39:14,248 Created temporary directory: /tmp/pip-wheel-x7p6w9y7
2025-10-14T05:39:14,251 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-14T05:39:14,253 Created temporary directory: /tmp/pip-ephem-wheel-cache-urlp2qvz
2025-10-14T05:39:14,274 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-14T05:39:14,278 2 location(s) to search for versions of tardis-em-analysis:
2025-10-14T05:39:14,278 * https://pypi.org/simple/tardis-em-analysis/
2025-10-14T05:39:14,278 * https://www.piwheels.org/simple/tardis-em-analysis/
2025-10-14T05:39:14,279 Fetching project page and analyzing links: https://pypi.org/simple/tardis-em-analysis/
2025-10-14T05:39:14,280 Getting page https://pypi.org/simple/tardis-em-analysis/
2025-10-14T05:39:14,281 Found index url https://pypi.org/simple
2025-10-14T05:39:14,491 Fetched page https://pypi.org/simple/tardis-em-analysis/ as application/vnd.pypi.simple.v1+json
2025-10-14T05:39:14,493   Skipping link: No binaries permitted for tardis-em-analysis: https://files.pythonhosted.org/packages/70/c3/8af2a621b457fb5dae10bcc0affbb885d1a1053bcd0e88da83c7bb4170b5/tardis_em_analysis-0.3.20-py3-none-any.whl (from https://pypi.org/simple/tardis-em-analysis/) (requires-python:!=3.12,>=3.10)
2025-10-14T05:39:14,494   Found link https://files.pythonhosted.org/packages/07/b8/c7a948ff0ecc0b031cae2d97aa8e53e83b3b4985d32fd96ef8a7bc512017/tardis_em_analysis-0.3.20.tar.gz (from https://pypi.org/simple/tardis-em-analysis/) (requires-python:!=3.12,>=3.10), version: 0.3.20
2025-10-14T05:39:14,494   Skipping link: No binaries permitted for tardis-em-analysis: https://files.pythonhosted.org/packages/3b/f9/16cabb995d45705a6f21443f3a834ebfd9ccec05f1601b6f9ad75df29252/tardis_em_analysis-0.3.22-py3-none-any.whl (from https://pypi.org/simple/tardis-em-analysis/) (requires-python:!=3.12,>=3.10)
2025-10-14T05:39:14,496   Found link https://files.pythonhosted.org/packages/08/75/d038aa2c02024c59c64b195234fdd60bdc98f44d4080dec40dbd2022da07/tardis_em_analysis-0.3.22.tar.gz (from https://pypi.org/simple/tardis-em-analysis/) (requires-python:!=3.12,>=3.10), version: 0.3.22
2025-10-14T05:39:14,497 Fetching project page and analyzing links: https://www.piwheels.org/simple/tardis-em-analysis/
2025-10-14T05:39:14,497 Getting page https://www.piwheels.org/simple/tardis-em-analysis/
2025-10-14T05:39:14,499 Found index url https://www.piwheels.org/simple
2025-10-14T05:39:14,667 Fetched page https://www.piwheels.org/simple/tardis-em-analysis/ as text/html
2025-10-14T05:39:14,669   Skipping link: No binaries permitted for tardis-em-analysis: https://www.piwheels.org/simple/tardis-em-analysis/tardis_em_analysis-0.3.20-py3-none-any.whl#sha256=743f6e965b2a319f1e070a7ccddd6c11c4577abee922192461ff461f0f2f931f (from https://www.piwheels.org/simple/tardis-em-analysis/) (requires-python:!=3.12,>=3.10)
2025-10-14T05:39:14,670 Skipping link: not a file: https://www.piwheels.org/simple/tardis-em-analysis/
2025-10-14T05:39:14,670 Skipping link: not a file: https://pypi.org/simple/tardis-em-analysis/
2025-10-14T05:39:14,689 Given no hashes to check 1 links for project 'tardis-em-analysis': discarding no candidates
2025-10-14T05:39:14,707 Collecting tardis-em-analysis==0.3.22
2025-10-14T05:39:14,709   Created temporary directory: /tmp/pip-unpack-v7onl3j8
2025-10-14T05:39:14,917   Downloading tardis_em_analysis-0.3.22.tar.gz (49 kB)
2025-10-14T05:39:15,021   Added tardis-em-analysis==0.3.22 from https://files.pythonhosted.org/packages/08/75/d038aa2c02024c59c64b195234fdd60bdc98f44d4080dec40dbd2022da07/tardis_em_analysis-0.3.22.tar.gz to build tracker '/tmp/pip-build-tracker-kyczs9tc'
2025-10-14T05:39:15,025   Created temporary directory: /tmp/pip-build-env-72elnr9_
2025-10-14T05:39:15,029   Installing build dependencies: started
2025-10-14T05:39:15,031   Running command pip subprocess to install build dependencies
2025-10-14T05:39:16,208   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-10-14T05:39:16,811   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-14T05:39:16,834   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-14T05:39:18,535   Collecting setuptools>42.0
2025-10-14T05:39:18,629     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-10-14T05:39:18,900   Collecting wheel
2025-10-14T05:39:18,917     Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB)
2025-10-14T05:39:21,984   Installing collected packages: wheel, setuptools
2025-10-14T05:39:22,220     Creating /tmp/pip-build-env-72elnr9_/overlay/local/bin
2025-10-14T05:39:22,222     changing mode of /tmp/pip-build-env-72elnr9_/overlay/local/bin/wheel to 755
2025-10-14T05:39:25,758   Successfully installed setuptools-80.9.0 wheel-0.45.1
2025-10-14T05:39:26,029   Installing build dependencies: finished with status 'done'
2025-10-14T05:39:26,035   Getting requirements to build wheel: started
2025-10-14T05:39:26,037   Running command Getting requirements to build wheel
2025-10-14T05:39:26,578   /tmp/pip-build-env-72elnr9_/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-x7p6w9y7/tardis-em-analysis_f8aac538a5e543afaa10b89e1bf06895/README.md' cannot be found
2025-10-14T05:39:26,578     return '\n'.join(
2025-10-14T05:39:26,640   running egg_info
2025-10-14T05:39:26,647   writing tardis_em_analysis.egg-info/PKG-INFO
2025-10-14T05:39:26,651   writing dependency_links to tardis_em_analysis.egg-info/dependency_links.txt
2025-10-14T05:39:26,653   writing requirements to tardis_em_analysis.egg-info/requires.txt
2025-10-14T05:39:26,654   writing top-level names to tardis_em_analysis.egg-info/top_level.txt
2025-10-14T05:39:26,684   reading manifest file 'tardis_em_analysis.egg-info/SOURCES.txt'
2025-10-14T05:39:26,687   reading manifest template 'MANIFEST.in'
2025-10-14T05:39:26,689   adding license file 'LICENSE'
2025-10-14T05:39:26,692   writing manifest file 'tardis_em_analysis.egg-info/SOURCES.txt'
2025-10-14T05:39:26,780   Getting requirements to build wheel: finished with status 'done'
2025-10-14T05:39:26,784   Created temporary directory: /tmp/pip-modern-metadata-cyo0wvoa
2025-10-14T05:39:26,786   Preparing metadata (pyproject.toml): started
2025-10-14T05:39:26,787   Running command Preparing metadata (pyproject.toml)
2025-10-14T05:39:27,305   /tmp/pip-build-env-72elnr9_/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-x7p6w9y7/tardis-em-analysis_f8aac538a5e543afaa10b89e1bf06895/README.md' cannot be found
2025-10-14T05:39:27,305     return '\n'.join(
2025-10-14T05:39:27,345   running dist_info
2025-10-14T05:39:27,357   creating /tmp/pip-modern-metadata-cyo0wvoa/tardis_em_analysis.egg-info
2025-10-14T05:39:27,358   writing /tmp/pip-modern-metadata-cyo0wvoa/tardis_em_analysis.egg-info/PKG-INFO
2025-10-14T05:39:27,361   writing dependency_links to /tmp/pip-modern-metadata-cyo0wvoa/tardis_em_analysis.egg-info/dependency_links.txt
2025-10-14T05:39:27,364   writing requirements to /tmp/pip-modern-metadata-cyo0wvoa/tardis_em_analysis.egg-info/requires.txt
2025-10-14T05:39:27,365   writing top-level names to /tmp/pip-modern-metadata-cyo0wvoa/tardis_em_analysis.egg-info/top_level.txt
2025-10-14T05:39:27,366   writing manifest file '/tmp/pip-modern-metadata-cyo0wvoa/tardis_em_analysis.egg-info/SOURCES.txt'
2025-10-14T05:39:27,393   reading manifest file '/tmp/pip-modern-metadata-cyo0wvoa/tardis_em_analysis.egg-info/SOURCES.txt'
2025-10-14T05:39:27,395   reading manifest template 'MANIFEST.in'
2025-10-14T05:39:27,396   adding license file 'LICENSE'
2025-10-14T05:39:27,399   writing manifest file '/tmp/pip-modern-metadata-cyo0wvoa/tardis_em_analysis.egg-info/SOURCES.txt'
2025-10-14T05:39:27,400   creating '/tmp/pip-modern-metadata-cyo0wvoa/tardis_em_analysis-0.3.22.dist-info'
2025-10-14T05:39:27,526   Preparing metadata (pyproject.toml): finished with status 'done'
2025-10-14T05:39:27,531   Source in /tmp/pip-wheel-x7p6w9y7/tardis-em-analysis_f8aac538a5e543afaa10b89e1bf06895 has version 0.3.22, which satisfies requirement tardis-em-analysis==0.3.22 from https://files.pythonhosted.org/packages/08/75/d038aa2c02024c59c64b195234fdd60bdc98f44d4080dec40dbd2022da07/tardis_em_analysis-0.3.22.tar.gz
2025-10-14T05:39:27,532   Removed tardis-em-analysis==0.3.22 from https://files.pythonhosted.org/packages/08/75/d038aa2c02024c59c64b195234fdd60bdc98f44d4080dec40dbd2022da07/tardis_em_analysis-0.3.22.tar.gz from build tracker '/tmp/pip-build-tracker-kyczs9tc'
2025-10-14T05:39:27,538 Created temporary directory: /tmp/pip-unpack-tc683eg9
2025-10-14T05:39:27,538 Building wheels for collected packages: tardis-em-analysis
2025-10-14T05:39:27,543   Created temporary directory: /tmp/pip-wheel-cmgnicg6
2025-10-14T05:39:27,543   Destination directory: /tmp/pip-wheel-cmgnicg6
2025-10-14T05:39:27,545   Building wheel for tardis-em-analysis (pyproject.toml): started
2025-10-14T05:39:27,546   Running command Building wheel for tardis-em-analysis (pyproject.toml)
2025-10-14T05:39:28,068   /tmp/pip-build-env-72elnr9_/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-x7p6w9y7/tardis-em-analysis_f8aac538a5e543afaa10b89e1bf06895/README.md' cannot be found
2025-10-14T05:39:28,068     return '\n'.join(
2025-10-14T05:39:28,114   running bdist_wheel
2025-10-14T05:39:28,144   running build
2025-10-14T05:39:28,144   running build_py
2025-10-14T05:39:28,154   creating build/lib/tardis_em_analysis
2025-10-14T05:39:28,156   copying tardis_em_analysis/analysis.py -> build/lib/tardis_em_analysis
2025-10-14T05:39:28,159   copying tardis_em_analysis/__init__.py -> build/lib/tardis_em_analysis
2025-10-14T05:39:28,160   copying tardis_em_analysis/filament_utils.py -> build/lib/tardis_em_analysis
2025-10-14T05:39:28,163   copying tardis_em_analysis/spatial_graph_utils.py -> build/lib/tardis_em_analysis
2025-10-14T05:39:28,167   copying tardis_em_analysis/geometry_metrics.py -> build/lib/tardis_em_analysis
2025-10-14T05:39:28,170   copying tardis_em_analysis/filament_structure.py -> build/lib/tardis_em_analysis
2025-10-14T05:39:28,172   copying tardis_em_analysis/utils.py -> build/lib/tardis_em_analysis
2025-10-14T05:39:28,174   copying tardis_em_analysis/_version.py -> build/lib/tardis_em_analysis
2025-10-14T05:39:28,176   creating build/lib/tardis_em_analysis/mt_classification
2025-10-14T05:39:28,177   copying tardis_em_analysis/mt_classification/__init__.py -> build/lib/tardis_em_analysis/mt_classification
2025-10-14T05:39:28,179   copying tardis_em_analysis/mt_classification/mt_classes.py -> build/lib/tardis_em_analysis/mt_classification
2025-10-14T05:39:28,182   copying tardis_em_analysis/mt_classification/utils.py -> build/lib/tardis_em_analysis/mt_classification
2025-10-14T05:39:28,185   creating build/lib/tardis_em_analysis/stitch_volume
2025-10-14T05:39:28,186   copying tardis_em_analysis/stitch_volume/__init__.py -> build/lib/tardis_em_analysis/stitch_volume
2025-10-14T05:39:28,188   copying tardis_em_analysis/stitch_volume/align_tomograms.py -> build/lib/tardis_em_analysis/stitch_volume
2025-10-14T05:39:28,191   copying tardis_em_analysis/stitch_volume/utils.py -> build/lib/tardis_em_analysis/stitch_volume
2025-10-14T05:39:28,192   running egg_info
2025-10-14T05:39:28,203   writing tardis_em_analysis.egg-info/PKG-INFO
2025-10-14T05:39:28,206   writing dependency_links to tardis_em_analysis.egg-info/dependency_links.txt
2025-10-14T05:39:28,208   writing requirements to tardis_em_analysis.egg-info/requires.txt
2025-10-14T05:39:28,209   writing top-level names to tardis_em_analysis.egg-info/top_level.txt
2025-10-14T05:39:28,222   reading manifest file 'tardis_em_analysis.egg-info/SOURCES.txt'
2025-10-14T05:39:28,225   reading manifest template 'MANIFEST.in'
2025-10-14T05:39:28,226   adding license file 'LICENSE'
2025-10-14T05:39:28,230   writing manifest file 'tardis_em_analysis.egg-info/SOURCES.txt'
2025-10-14T05:39:28,247   installing to build/bdist.linux-armv7l/wheel
2025-10-14T05:39:28,248   running install
2025-10-14T05:39:28,271   running install_lib
2025-10-14T05:39:28,279   creating build/bdist.linux-armv7l/wheel
2025-10-14T05:39:28,281   creating build/bdist.linux-armv7l/wheel/tardis_em_analysis
2025-10-14T05:39:28,282   copying build/lib/tardis_em_analysis/analysis.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis
2025-10-14T05:39:28,285   copying build/lib/tardis_em_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis
2025-10-14T05:39:28,287   copying build/lib/tardis_em_analysis/filament_utils.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis
2025-10-14T05:39:28,289   copying build/lib/tardis_em_analysis/spatial_graph_utils.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis
2025-10-14T05:39:28,292   creating build/bdist.linux-armv7l/wheel/tardis_em_analysis/mt_classification
2025-10-14T05:39:28,293   copying build/lib/tardis_em_analysis/mt_classification/__init__.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis/mt_classification
2025-10-14T05:39:28,295   copying build/lib/tardis_em_analysis/mt_classification/mt_classes.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis/mt_classification
2025-10-14T05:39:28,298   copying build/lib/tardis_em_analysis/mt_classification/utils.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis/mt_classification
2025-10-14T05:39:28,301   copying build/lib/tardis_em_analysis/geometry_metrics.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis
2025-10-14T05:39:28,303   copying build/lib/tardis_em_analysis/filament_structure.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis
2025-10-14T05:39:28,305   copying build/lib/tardis_em_analysis/utils.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis
2025-10-14T05:39:28,308   creating build/bdist.linux-armv7l/wheel/tardis_em_analysis/stitch_volume
2025-10-14T05:39:28,309   copying build/lib/tardis_em_analysis/stitch_volume/__init__.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis/stitch_volume
2025-10-14T05:39:28,311   copying build/lib/tardis_em_analysis/stitch_volume/align_tomograms.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis/stitch_volume
2025-10-14T05:39:28,314   copying build/lib/tardis_em_analysis/stitch_volume/utils.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis/stitch_volume
2025-10-14T05:39:28,316   copying build/lib/tardis_em_analysis/_version.py -> build/bdist.linux-armv7l/wheel/./tardis_em_analysis
2025-10-14T05:39:28,317   running install_egg_info
2025-10-14T05:39:28,331   Copying tardis_em_analysis.egg-info to build/bdist.linux-armv7l/wheel/./tardis_em_analysis-0.3.22-py3.11.egg-info
2025-10-14T05:39:28,340   running install_scripts
2025-10-14T05:39:28,349   creating build/bdist.linux-armv7l/wheel/tardis_em_analysis-0.3.22.dist-info/WHEEL
2025-10-14T05:39:28,352   creating '/tmp/pip-wheel-cmgnicg6/.tmp-flrmtlru/tardis_em_analysis-0.3.22-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-10-14T05:39:28,354   adding 'tardis_em_analysis/__init__.py'
2025-10-14T05:39:28,356   adding 'tardis_em_analysis/_version.py'
2025-10-14T05:39:28,358   adding 'tardis_em_analysis/analysis.py'
2025-10-14T05:39:28,360   adding 'tardis_em_analysis/filament_structure.py'
2025-10-14T05:39:28,362   adding 'tardis_em_analysis/filament_utils.py'
2025-10-14T05:39:28,366   adding 'tardis_em_analysis/geometry_metrics.py'
2025-10-14T05:39:28,370   adding 'tardis_em_analysis/spatial_graph_utils.py'
2025-10-14T05:39:28,372   adding 'tardis_em_analysis/utils.py'
2025-10-14T05:39:28,374   adding 'tardis_em_analysis/mt_classification/__init__.py'
2025-10-14T05:39:28,377   adding 'tardis_em_analysis/mt_classification/mt_classes.py'
2025-10-14T05:39:28,380   adding 'tardis_em_analysis/mt_classification/utils.py'
2025-10-14T05:39:28,382   adding 'tardis_em_analysis/stitch_volume/__init__.py'
2025-10-14T05:39:28,386   adding 'tardis_em_analysis/stitch_volume/align_tomograms.py'
2025-10-14T05:39:28,387   adding 'tardis_em_analysis/stitch_volume/utils.py'
2025-10-14T05:39:28,390   adding 'tardis_em_analysis-0.3.22.dist-info/licenses/LICENSE'
2025-10-14T05:39:28,391   adding 'tardis_em_analysis-0.3.22.dist-info/METADATA'
2025-10-14T05:39:28,392   adding 'tardis_em_analysis-0.3.22.dist-info/WHEEL'
2025-10-14T05:39:28,393   adding 'tardis_em_analysis-0.3.22.dist-info/top_level.txt'
2025-10-14T05:39:28,394   adding 'tardis_em_analysis-0.3.22.dist-info/RECORD'
2025-10-14T05:39:28,395   removing build/bdist.linux-armv7l/wheel
2025-10-14T05:39:28,495   Building wheel for tardis-em-analysis (pyproject.toml): finished with status 'done'
2025-10-14T05:39:28,500   Created wheel for tardis-em-analysis: filename=tardis_em_analysis-0.3.22-py3-none-any.whl size=53805 sha256=9b7a65ab5d64baf44c6091c2409d339e6f67a08a319127b35f8a9bb01739d6e5
2025-10-14T05:39:28,501   Stored in directory: /tmp/pip-ephem-wheel-cache-urlp2qvz/wheels/6f/3b/d9/9cda61d9fd222dbe17e5107bace74d86363727e6c6c5c3a364
2025-10-14T05:39:28,511 Successfully built tardis-em-analysis
2025-10-14T05:39:28,515 Removed build tracker: '/tmp/pip-build-tracker-kyczs9tc'