2025-10-14T20:19:38,395 Created temporary directory: /tmp/pip-ephem-wheel-cache-0vne69or 2025-10-14T20:19:38,397 Created temporary directory: /tmp/pip-build-tracker-2klu3h7x 2025-10-14T20:19:38,397 Initialized build tracking at /tmp/pip-build-tracker-2klu3h7x 2025-10-14T20:19:38,398 Created build tracker: /tmp/pip-build-tracker-2klu3h7x 2025-10-14T20:19:38,398 Entered build tracker: /tmp/pip-build-tracker-2klu3h7x 2025-10-14T20:19:38,399 Created temporary directory: /tmp/pip-wheel-h15z506p 2025-10-14T20:19:38,402 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-14T20:19:38,405 Created temporary directory: /tmp/pip-ephem-wheel-cache-k6lzr5an 2025-10-14T20:19:38,429 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-14T20:19:38,432 2 location(s) to search for versions of onecodex: 2025-10-14T20:19:38,432 * https://pypi.org/simple/onecodex/ 2025-10-14T20:19:38,432 * https://www.piwheels.org/simple/onecodex/ 2025-10-14T20:19:38,433 Fetching project page and analyzing links: https://pypi.org/simple/onecodex/ 2025-10-14T20:19:38,434 Getting page https://pypi.org/simple/onecodex/ 2025-10-14T20:19:38,435 Found index url https://pypi.org/simple 2025-10-14T20:19:38,650 Fetched page https://pypi.org/simple/onecodex/ as application/vnd.pypi.simple.v1+json 2025-10-14T20:19:38,666 Found link https://files.pythonhosted.org/packages/24/9c/73c8ee44a2cc65e1d62fcd0ba2a47860f6d038086b3f68a831ce1c387185/onecodex-0.0.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.1 2025-10-14T20:19:38,667 Found link https://files.pythonhosted.org/packages/9f/f7/19126a7a026e4d3d4b5dae5300563dd40eedde1ebd7c0ea45d63a5b4a5fa/onecodex-0.0.2.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.2 2025-10-14T20:19:38,667 Found link https://files.pythonhosted.org/packages/f1/fb/4bd94bcb3ab1b60d5012d87960cf512ba15e55a41604e4cf95b688c6663e/onecodex-0.0.3.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.3 2025-10-14T20:19:38,668 Found link https://files.pythonhosted.org/packages/72/d4/ecf6ce45289f863da44f3679a80890befaf777b56518e4e0687e103f9839/onecodex-0.0.4.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.4 2025-10-14T20:19:38,669 Found link https://files.pythonhosted.org/packages/d8/c1/fa293e0fca99ec13e7b102bf370531ac7f191841f86cbe4f49164faee3b1/onecodex-0.0.5.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.5 2025-10-14T20:19:38,670 Found link https://files.pythonhosted.org/packages/fd/bd/b242968f0032bfdaccc3b0e99351e06027dac68ab674be09885cae806460/onecodex-0.0.6.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.6 2025-10-14T20:19:38,671 Found link https://files.pythonhosted.org/packages/20/2e/d7f2cd658103b3f4fd995b058efa264add5f16eb83c208ea72963076d5f2/onecodex-0.0.7.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.7 2025-10-14T20:19:38,671 Found link https://files.pythonhosted.org/packages/2e/df/819bf3408acaef4ed99f2acef6d532e73a27c57031ca2bb5c76f4405d50a/onecodex-0.0.8.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.8 2025-10-14T20:19:38,672 Found link https://files.pythonhosted.org/packages/c8/32/87228c95b42bf63e56c4735afb93ee67f95188a5b48936a489b1390c97cd/onecodex-0.0.9.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.9 2025-10-14T20:19:38,673 Found link https://files.pythonhosted.org/packages/a3/1a/dcc608efe8f43446c671d58dcc3eb81edf9730bb90ab1a57b7a2315d67b4/onecodex-0.0.10.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.0.10 2025-10-14T20:19:38,673 Found link https://files.pythonhosted.org/packages/fa/cf/5d9bde531654457b5aad1c2612a830bc34f981ff288c1ba206a2e89152cf/onecodex-0.1.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.1.0 2025-10-14T20:19:38,674 Found link https://files.pythonhosted.org/packages/6a/66/8a636283b765fd9a02c111ea0094ff7206360245a22fd188fc7ba0b0fa4e/onecodex-0.1.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.1.1 2025-10-14T20:19:38,675 Found link https://files.pythonhosted.org/packages/82/b0/a7edb3d0fa23fd8d6c17e7dc2d90ae717a164f04d799ea00aa78af5441df/onecodex-0.1.2.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.1.2 2025-10-14T20:19:38,676 Found link https://files.pythonhosted.org/packages/24/d1/54d92de5608800360a596c150c291000b4d1804be08b9d3ef00b108f0132/onecodex-0.1.3.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.1.3 2025-10-14T20:19:38,676 Found link https://files.pythonhosted.org/packages/21/d5/846f358c3add03793ccd2d3e74b6c2fad2e9acea92fc2777e732a97652d0/onecodex-0.1.4.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.1.4 2025-10-14T20:19:38,677 Found link https://files.pythonhosted.org/packages/85/b8/546d5d950ef763ebf55e4e56149b006d102e3c4c8274dabbd402c9d7fe6b/onecodex-0.2.0a0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.0a0 2025-10-14T20:19:38,677 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e5/da/aea6d3115e6e56289c40bec0f0668bf57755d7cf575eb762c928576aa7f1/onecodex-0.2.0a1-py2.7.egg (from https://pypi.org/simple/onecodex/) 2025-10-14T20:19:38,678 Found link https://files.pythonhosted.org/packages/bd/a6/328333ca642aa278b806f670bf2dbff3e1fd7892b7868f96289663def0a4/onecodex-0.2.0a1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.0a1 2025-10-14T20:19:38,679 Found link https://files.pythonhosted.org/packages/c7/f5/3bf951652d5c87786f9beaff1d317b5921102253fc953a04fcfe5c9a4814/onecodex-0.2.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.0 2025-10-14T20:19:38,679 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/86/1f/32868f6f79a482d60eca2d7bf5f9c7153fcbe72805a06aa27cbb3129b02c/onecodex-0.2.1-py2.7.egg (from https://pypi.org/simple/onecodex/) 2025-10-14T20:19:38,680 Found link https://files.pythonhosted.org/packages/47/cb/7909f3d58e4b850862d08c0a468b7eba0d634697b79d54d7c7fce683a4f6/onecodex-0.2.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.1 2025-10-14T20:19:38,680 Found link https://files.pythonhosted.org/packages/10/b1/e66762a2c9e67a0322bbcc96bb413f45749be315163392b79d3060e81649/onecodex-0.2.2.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.2 2025-10-14T20:19:38,681 Found link https://files.pythonhosted.org/packages/cf/0a/10be06247079528cdcfc25c01e6e6496be3c356f8e6ef3ddccb1c1b7816c/onecodex-0.2.3.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.3 2025-10-14T20:19:38,682 Found link https://files.pythonhosted.org/packages/82/32/595064f841cc9ea0ce6b2eebb4c1dfb18b081cc3e3550cebed1ef5fd5850/onecodex-0.2.4.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.4 2025-10-14T20:19:38,682 Found link https://files.pythonhosted.org/packages/3c/26/973ef4701d164d71900cfd4a11e3c85056a33af94b2a61a0906083098eb7/onecodex-0.2.5.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.5 2025-10-14T20:19:38,683 Found link https://files.pythonhosted.org/packages/6e/ae/8453a17f82c65f6c61f8178f81a557ee0dfb94cb525346d1594d65592b61/onecodex-0.2.6.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.6 2025-10-14T20:19:38,684 Found link https://files.pythonhosted.org/packages/5f/cb/d273e336e3cd507a551d9288f00f35fa0d6e82a01d932b820b00c63edf43/onecodex-0.2.7.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.7 2025-10-14T20:19:38,684 Found link https://files.pythonhosted.org/packages/bc/d9/34a3fdda441840eabcabe73cd8656db8d4ea5f4d1e1b77c88577a9910b1a/onecodex-0.2.8.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.8 2025-10-14T20:19:38,685 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c4/f8/2c0dd006c8e65dcdb9dd5b3d34c38ed2d7bbc283debc760b0197ad5a2e9b/onecodex-0.2.9-py3.6.egg (from https://pypi.org/simple/onecodex/) 2025-10-14T20:19:38,686 Found link https://files.pythonhosted.org/packages/af/c2/c27f749fbe7ff040cbabf6921448a1f57e0687b6f8cab9b265bae0803030/onecodex-0.2.9.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.9 2025-10-14T20:19:38,687 Found link https://files.pythonhosted.org/packages/09/d9/e71331423eaf002ea99b1f4e7a61b167f6f8f4091e591c567f13c4df878a/onecodex-0.2.10.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.10 2025-10-14T20:19:38,688 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8e/66/675d1c7ac150dda99fd9dd10f6e037aa3e71260a707505135c929120c818/onecodex-0.2.11-py2.7.egg (from https://pypi.org/simple/onecodex/) 2025-10-14T20:19:38,688 Found link https://files.pythonhosted.org/packages/61/3d/3bfc5c37fa0daddb13725a2cbc69418e0303a7af8a81ccc8d65ebc03713b/onecodex-0.2.11.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.11 2025-10-14T20:19:38,689 Found link https://files.pythonhosted.org/packages/84/97/d065263086b24cb4b74c104fd5c07384922cc81a32615ada074895088912/onecodex-0.2.12.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.12 2025-10-14T20:19:38,689 Found link https://files.pythonhosted.org/packages/95/1f/08fe44513e1d7015a9bda132762df927c1831b245de56b7a0a7447bd06b1/onecodex-0.2.13.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.13 2025-10-14T20:19:38,690 Found link https://files.pythonhosted.org/packages/89/72/8cf2d2a53515ae790ed8c304cf44c5c9376afa6f355f905301b51a045968/onecodex-0.2.14.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.2.14 2025-10-14T20:19:38,690 Found link https://files.pythonhosted.org/packages/d2/33/01ef57f7b9532ca79565e1fad4cffff2ea96847facf7cd09121aa0c9780c/onecodex-0.3.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.3.0 2025-10-14T20:19:38,691 Found link https://files.pythonhosted.org/packages/92/f1/20a29b09336a443c540d7fb710c9a9a77a860bbf4489407f306bc44e6d7a/onecodex-0.3.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.3.1 2025-10-14T20:19:38,692 Found link https://files.pythonhosted.org/packages/a1/94/aaf2d1c459b2a95645bde3466b9df0320f8a5190c05f808e5096948e3889/onecodex-0.4.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.4.0 2025-10-14T20:19:38,692 Found link https://files.pythonhosted.org/packages/00/51/9370127517278c891b95881cda1d25569a2942a007e6111534c544d7251d/onecodex-0.4.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.4.1 2025-10-14T20:19:38,693 Found link https://files.pythonhosted.org/packages/e3/5f/338c31066f5ff9145adc40c6e7bad1c61e2af1c7f6f19f9b1a10fb09cb79/onecodex-0.4.2.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.4.2 2025-10-14T20:19:38,694 Found link https://files.pythonhosted.org/packages/19/13/577ee6148607a6ba5182169dbc5b93b40afc470a86a27c9c6c01dbe5ef84/onecodex-0.4.3.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.4.3 2025-10-14T20:19:38,694 Found link https://files.pythonhosted.org/packages/3d/38/db4d7a8cbbd891818bc6da3ba3b65746d763038ec29bfd168f5696aea018/onecodex-0.4.4.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.4.4 2025-10-14T20:19:38,695 Found link https://files.pythonhosted.org/packages/c0/05/1c8e3be543c28d8f5a79bfd332dcc80a95b083bd478fede3aa692fc5fb5c/onecodex-0.4.5.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.4.5 2025-10-14T20:19:38,696 Found link https://files.pythonhosted.org/packages/f8/98/b7480b33c672eb2f3c76644bcdf3103e6bd9dd9838c78b90adc2f6ef23f0/onecodex-0.5.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.5.0 2025-10-14T20:19:38,697 Found link 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https://files.pythonhosted.org/packages/99/7d/b7e0644d4b3de635c38a8c9ef7907fc16e46133c0203d0d7fc9cff65dc7a/onecodex-0.5.5.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.5.5 2025-10-14T20:19:38,700 Found link https://files.pythonhosted.org/packages/2a/07/28f7f541fc66fe7e38da719f6a3e46aec7d398762c2a6e952a2fba8ada37/onecodex-0.5.6.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.5.6 2025-10-14T20:19:38,701 Found link https://files.pythonhosted.org/packages/df/d0/16758202d45deaee8e6874a217057e1db1fbf41740d2ed157807f8ae6bb8/onecodex-0.6.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.6.0 2025-10-14T20:19:38,702 Found link https://files.pythonhosted.org/packages/f3/f0/a65f4cbdef19090b725d64a1c05d194f0689fd6bc411f85a277b65d69ae3/onecodex-0.6.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.6.1 2025-10-14T20:19:38,702 Found link 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https://files.pythonhosted.org/packages/f0/ca/37e17d697175c93b6669f6eb783e5a49978abfe64b8ef923b5fe0fb4309a/onecodex-0.7.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.7.0 2025-10-14T20:19:38,706 Found link https://files.pythonhosted.org/packages/a2/8e/3d26edbef0aea6014df4e911713df25e32b742c3e3423b77fc845a54cf7c/onecodex-0.7.1.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.7.1 2025-10-14T20:19:38,706 Found link https://files.pythonhosted.org/packages/99/58/2bb966c49d731cabfde0889d7de9d9bd3b9d64b700f9aa7a697e2a12eb83/onecodex-0.7.2.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.7.2 2025-10-14T20:19:38,707 Found link https://files.pythonhosted.org/packages/fd/bf/97dc6445a5a33628fe2d2b22169c0fa5755fba3584861605b135ccb45f19/onecodex-0.8.0.tar.gz (from https://pypi.org/simple/onecodex/), version: 0.8.0 2025-10-14T20:19:38,708 Found link 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'onecodex': discarding no candidates 2025-10-14T20:19:39,031 Collecting onecodex==0.19.1 2025-10-14T20:19:39,033 Created temporary directory: /tmp/pip-unpack-18fmsx8k 2025-10-14T20:19:39,252 Downloading onecodex-0.19.1.tar.gz (3.8 MB) 2025-10-14T20:19:40,643 Added onecodex==0.19.1 from https://files.pythonhosted.org/packages/96/e0/e34fbf6a0b61fd41cbb10679c4323fe9ed08b6b8327f840da2a811fcb4ff/onecodex-0.19.1.tar.gz to build tracker '/tmp/pip-build-tracker-2klu3h7x' 2025-10-14T20:19:40,653 Created temporary directory: /tmp/pip-build-env-scyy66qn 2025-10-14T20:19:40,660 Installing build dependencies: started 2025-10-14T20:19:40,661 Running command pip subprocess to install build dependencies 2025-10-14T20:19:41,813 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-10-14T20:19:42,416 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-14T20:19:42,439 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-14T20:19:44,186 Collecting setuptools>=61.0 2025-10-14T20:19:44,295 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-10-14T20:19:44,670 Collecting setuptools-scm 2025-10-14T20:19:44,690 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.1-py3-none-any.whl (62 kB) 2025-10-14T20:19:44,877 Collecting packaging>=20 2025-10-14T20:19:44,903 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2025-10-14T20:19:47,937 Installing collected packages: setuptools, packaging, setuptools-scm 2025-10-14T20:19:51,934 Creating /tmp/pip-build-env-scyy66qn/overlay/local/bin 2025-10-14T20:19:51,936 changing mode of /tmp/pip-build-env-scyy66qn/overlay/local/bin/setuptools-scm to 755 2025-10-14T20:19:51,960 Successfully installed packaging-25.0 setuptools-80.9.0 setuptools-scm-9.2.1 2025-10-14T20:19:52,238 Installing build dependencies: finished with status 'done' 2025-10-14T20:19:52,245 Getting requirements to build wheel: started 2025-10-14T20:19:52,246 Running command Getting requirements to build wheel 2025-10-14T20:19:52,879 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-10-14T20:19:52,881 /tmp/pip-build-env-scyy66qn/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/deprecation.py:7: UserWarning: pyproject.toml: at [tool.setuptools.dynamic] 2025-10-14T20:19:52,881 version = {attr = ...} is forcing setuptools to override the version setuptools-scm did already set 2025-10-14T20:19:52,882 When using setuptools-scm it's invalid to use setuptools dynamic version as well, please remove it. 2025-10-14T20:19:52,882 Setuptools-scm is responsible for setting the version, forcing setuptools to override creates errors. 2025-10-14T20:19:52,883 warnings.warn( 2025-10-14T20:19:52,958 /tmp/pip-build-env-scyy66qn/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-14T20:19:52,958 !! 2025-10-14T20:19:52,960 ******************************************************************************** 2025-10-14T20:19:52,960 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-14T20:19:52,962 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-14T20:19:52,962 or your builds will no longer be supported. 2025-10-14T20:19:52,963 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-14T20:19:52,964 ******************************************************************************** 2025-10-14T20:19:52,965 !! 2025-10-14T20:19:52,966 corresp(dist, value, root_dir) 2025-10-14T20:19:53,053 /tmp/pip-build-env-scyy66qn/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-14T20:19:53,054 !! 2025-10-14T20:19:53,055 ******************************************************************************** 2025-10-14T20:19:53,056 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-14T20:19:53,057 License :: OSI Approved :: MIT License 2025-10-14T20:19:53,058 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-14T20:19:53,059 ******************************************************************************** 2025-10-14T20:19:53,060 !! 2025-10-14T20:19:53,061 dist._finalize_license_expression() 2025-10-14T20:19:53,062 /tmp/pip-build-env-scyy66qn/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-14T20:19:53,062 !! 2025-10-14T20:19:53,064 ******************************************************************************** 2025-10-14T20:19:53,064 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-14T20:19:53,066 License :: OSI Approved :: MIT License 2025-10-14T20:19:53,067 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-14T20:19:53,068 ******************************************************************************** 2025-10-14T20:19:53,069 !! 2025-10-14T20:19:53,069 self._finalize_license_expression() 2025-10-14T20:19:53,072 running egg_info 2025-10-14T20:19:53,080 writing onecodex.egg-info/PKG-INFO 2025-10-14T20:19:53,093 writing dependency_links to onecodex.egg-info/dependency_links.txt 2025-10-14T20:19:53,095 writing entry points to onecodex.egg-info/entry_points.txt 2025-10-14T20:19:53,104 writing requirements to onecodex.egg-info/requires.txt 2025-10-14T20:19:53,106 writing top-level names to onecodex.egg-info/top_level.txt 2025-10-14T20:19:53,169 listing git files failed - pretending there aren't any 2025-10-14T20:19:53,177 reading manifest file 'onecodex.egg-info/SOURCES.txt' 2025-10-14T20:19:53,188 reading manifest template 'MANIFEST.in' 2025-10-14T20:19:53,191 warning: no files found matching 'pytest.ini' 2025-10-14T20:19:53,191 warning: no directories found matching 'licenses' 2025-10-14T20:19:53,192 adding license file 'LICENSE' 2025-10-14T20:19:53,200 writing manifest file 'onecodex.egg-info/SOURCES.txt' 2025-10-14T20:19:53,302 Getting requirements to build wheel: finished with status 'done' 2025-10-14T20:19:53,305 Created temporary directory: /tmp/pip-modern-metadata-fbgke479 2025-10-14T20:19:53,308 Preparing metadata (pyproject.toml): started 2025-10-14T20:19:53,309 Running command Preparing metadata (pyproject.toml) 2025-10-14T20:19:53,900 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-10-14T20:19:53,902 /tmp/pip-build-env-scyy66qn/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/deprecation.py:7: UserWarning: pyproject.toml: at [tool.setuptools.dynamic] 2025-10-14T20:19:53,902 version = {attr = ...} is forcing setuptools to override the version setuptools-scm did already set 2025-10-14T20:19:53,903 When using setuptools-scm it's invalid to use setuptools dynamic version as well, please remove it. 2025-10-14T20:19:53,904 Setuptools-scm is responsible for setting the version, forcing setuptools to override creates errors. 2025-10-14T20:19:53,904 warnings.warn( 2025-10-14T20:19:53,961 /tmp/pip-build-env-scyy66qn/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-14T20:19:53,962 !! 2025-10-14T20:19:53,963 ******************************************************************************** 2025-10-14T20:19:53,964 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-14T20:19:53,965 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-14T20:19:53,966 or your builds will no longer be supported. 2025-10-14T20:19:53,967 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-14T20:19:53,968 ******************************************************************************** 2025-10-14T20:19:53,970 !! 2025-10-14T20:19:53,970 corresp(dist, value, root_dir) 2025-10-14T20:19:54,050 /tmp/pip-build-env-scyy66qn/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-14T20:19:54,050 !! 2025-10-14T20:19:54,052 ******************************************************************************** 2025-10-14T20:19:54,052 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-14T20:19:54,054 License :: OSI Approved :: MIT License 2025-10-14T20:19:54,055 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-14T20:19:54,056 ******************************************************************************** 2025-10-14T20:19:54,057 !! 2025-10-14T20:19:54,058 dist._finalize_license_expression() 2025-10-14T20:19:54,058 /tmp/pip-build-env-scyy66qn/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-14T20:19:54,059 !! 2025-10-14T20:19:54,060 ******************************************************************************** 2025-10-14T20:19:54,060 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-14T20:19:54,061 License :: OSI Approved :: MIT License 2025-10-14T20:19:54,062 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-14T20:19:54,062 ******************************************************************************** 2025-10-14T20:19:54,063 !! 2025-10-14T20:19:54,064 self._finalize_license_expression() 2025-10-14T20:19:54,066 running dist_info 2025-10-14T20:19:54,081 creating /tmp/pip-modern-metadata-fbgke479/onecodex.egg-info 2025-10-14T20:19:54,082 writing /tmp/pip-modern-metadata-fbgke479/onecodex.egg-info/PKG-INFO 2025-10-14T20:19:54,095 writing dependency_links to /tmp/pip-modern-metadata-fbgke479/onecodex.egg-info/dependency_links.txt 2025-10-14T20:19:54,097 writing entry points to /tmp/pip-modern-metadata-fbgke479/onecodex.egg-info/entry_points.txt 2025-10-14T20:19:54,105 writing requirements to /tmp/pip-modern-metadata-fbgke479/onecodex.egg-info/requires.txt 2025-10-14T20:19:54,107 writing top-level names to /tmp/pip-modern-metadata-fbgke479/onecodex.egg-info/top_level.txt 2025-10-14T20:19:54,108 writing manifest file '/tmp/pip-modern-metadata-fbgke479/onecodex.egg-info/SOURCES.txt' 2025-10-14T20:19:54,165 listing git files failed - pretending there aren't any 2025-10-14T20:19:54,171 reading manifest file '/tmp/pip-modern-metadata-fbgke479/onecodex.egg-info/SOURCES.txt' 2025-10-14T20:19:54,173 reading manifest template 'MANIFEST.in' 2025-10-14T20:19:54,175 warning: no files found matching 'pytest.ini' 2025-10-14T20:19:54,176 warning: no directories found matching 'licenses' 2025-10-14T20:19:54,177 adding license file 'LICENSE' 2025-10-14T20:19:54,181 writing manifest file '/tmp/pip-modern-metadata-fbgke479/onecodex.egg-info/SOURCES.txt' 2025-10-14T20:19:54,182 creating '/tmp/pip-modern-metadata-fbgke479/onecodex-0.19.1.dist-info' 2025-10-14T20:19:54,315 Preparing metadata (pyproject.toml): finished with status 'done' 2025-10-14T20:19:54,320 Source in /tmp/pip-wheel-h15z506p/onecodex_8edf8a5ffed04c7d8a35735e1aa33ab1 has version 0.19.1, which satisfies requirement onecodex==0.19.1 from https://files.pythonhosted.org/packages/96/e0/e34fbf6a0b61fd41cbb10679c4323fe9ed08b6b8327f840da2a811fcb4ff/onecodex-0.19.1.tar.gz 2025-10-14T20:19:54,321 Removed onecodex==0.19.1 from https://files.pythonhosted.org/packages/96/e0/e34fbf6a0b61fd41cbb10679c4323fe9ed08b6b8327f840da2a811fcb4ff/onecodex-0.19.1.tar.gz from build tracker '/tmp/pip-build-tracker-2klu3h7x' 2025-10-14T20:19:54,328 Created temporary directory: /tmp/pip-unpack-hxmdj7em 2025-10-14T20:19:54,329 Building wheels for collected packages: onecodex 2025-10-14T20:19:54,333 Created temporary directory: /tmp/pip-wheel-jzd96a_3 2025-10-14T20:19:54,334 Destination directory: /tmp/pip-wheel-jzd96a_3 2025-10-14T20:19:54,336 Building wheel for onecodex (pyproject.toml): started 2025-10-14T20:19:54,338 Running command Building wheel for onecodex (pyproject.toml) 2025-10-14T20:19:54,912 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-10-14T20:19:54,914 /tmp/pip-build-env-scyy66qn/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/deprecation.py:7: UserWarning: pyproject.toml: at [tool.setuptools.dynamic] 2025-10-14T20:19:54,914 version = {attr = ...} is forcing setuptools to override the version setuptools-scm did already set 2025-10-14T20:19:54,915 When using setuptools-scm it's invalid to use setuptools dynamic version as well, please remove it. 2025-10-14T20:19:54,916 Setuptools-scm is responsible for setting the version, forcing setuptools to override creates errors. 2025-10-14T20:19:54,916 warnings.warn( 2025-10-14T20:19:54,972 /tmp/pip-build-env-scyy66qn/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-14T20:19:54,973 !! 2025-10-14T20:19:54,974 ******************************************************************************** 2025-10-14T20:19:54,974 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-14T20:19:54,975 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-14T20:19:54,976 or your builds will no longer be supported. 2025-10-14T20:19:54,977 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-14T20:19:54,977 ******************************************************************************** 2025-10-14T20:19:54,978 !! 2025-10-14T20:19:54,979 corresp(dist, value, root_dir) 2025-10-14T20:19:55,055 /tmp/pip-build-env-scyy66qn/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-14T20:19:55,055 !! 2025-10-14T20:19:55,057 ******************************************************************************** 2025-10-14T20:19:55,057 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-14T20:19:55,058 License :: OSI Approved :: MIT License 2025-10-14T20:19:55,060 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-14T20:19:55,060 ******************************************************************************** 2025-10-14T20:19:55,062 !! 2025-10-14T20:19:55,062 dist._finalize_license_expression() 2025-10-14T20:19:55,063 /tmp/pip-build-env-scyy66qn/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-14T20:19:55,064 !! 2025-10-14T20:19:55,065 ******************************************************************************** 2025-10-14T20:19:55,066 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-14T20:19:55,067 License :: OSI Approved :: MIT License 2025-10-14T20:19:55,068 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-14T20:19:55,069 ******************************************************************************** 2025-10-14T20:19:55,070 !! 2025-10-14T20:19:55,071 self._finalize_license_expression() 2025-10-14T20:19:55,071 running bdist_wheel 2025-10-14T20:19:55,091 running build 2025-10-14T20:19:55,092 running build_py 2025-10-14T20:19:55,100 creating build/lib/onecodex 2025-10-14T20:19:55,102 copying onecodex/__init__.py -> build/lib/onecodex 2025-10-14T20:19:55,105 copying onecodex/api.py -> build/lib/onecodex 2025-10-14T20:19:55,107 copying onecodex/distance.py -> build/lib/onecodex 2025-10-14T20:19:55,109 copying onecodex/auth.py -> build/lib/onecodex 2025-10-14T20:19:55,112 copying onecodex/version.py -> build/lib/onecodex 2025-10-14T20:19:55,114 copying onecodex/metadata_upload.py -> build/lib/onecodex 2025-10-14T20:19:55,116 copying onecodex/input_helpers.py -> build/lib/onecodex 2025-10-14T20:19:55,118 copying onecodex/analyses.py -> build/lib/onecodex 2025-10-14T20:19:55,121 copying onecodex/dataframes.py -> build/lib/onecodex 2025-10-14T20:19:55,124 copying onecodex/utils.py -> build/lib/onecodex 2025-10-14T20:19:55,126 copying onecodex/taxonomy.py -> build/lib/onecodex 2025-10-14T20:19:55,128 copying onecodex/cli.py -> build/lib/onecodex 2025-10-14T20:19:55,131 copying onecodex/stats.py -> build/lib/onecodex 2025-10-14T20:19:55,133 copying onecodex/exceptions.py -> build/lib/onecodex 2025-10-14T20:19:55,136 creating build/lib/docs 2025-10-14T20:19:55,137 copying docs/conf.py -> build/lib/docs 2025-10-14T20:19:55,140 creating build/lib/onecodex/viz 2025-10-14T20:19:55,141 copying onecodex/viz/_bargraph.py -> build/lib/onecodex/viz 2025-10-14T20:19:55,143 copying onecodex/viz/__init__.py -> build/lib/onecodex/viz 2025-10-14T20:19:55,145 copying onecodex/viz/_heatmap.py -> build/lib/onecodex/viz 2025-10-14T20:19:55,148 copying onecodex/viz/_distance.py -> build/lib/onecodex/viz 2025-10-14T20:19:55,151 copying onecodex/viz/_primitives.py -> build/lib/onecodex/viz 2025-10-14T20:19:55,153 copying onecodex/viz/_functional.py -> build/lib/onecodex/viz 2025-10-14T20:19:55,155 copying onecodex/viz/_metadata.py -> build/lib/onecodex/viz 2025-10-14T20:19:55,158 copying onecodex/viz/_pca.py -> build/lib/onecodex/viz 2025-10-14T20:19:55,161 creating build/lib/onecodex/lib 2025-10-14T20:19:55,162 copying onecodex/lib/__init__.py -> build/lib/onecodex/lib 2025-10-14T20:19:55,163 copying onecodex/lib/upload.py -> build/lib/onecodex/lib 2025-10-14T20:19:55,166 copying onecodex/lib/download.py -> build/lib/onecodex/lib 2025-10-14T20:19:55,168 copying onecodex/lib/enums.py -> build/lib/onecodex/lib 2025-10-14T20:19:55,170 copying onecodex/lib/auth.py -> build/lib/onecodex/lib 2025-10-14T20:19:55,172 copying onecodex/lib/files.py -> build/lib/onecodex/lib 2025-10-14T20:19:55,175 creating build/lib/onecodex/notebooks 2025-10-14T20:19:55,176 copying onecodex/notebooks/__init__.py -> build/lib/onecodex/notebooks 2025-10-14T20:19:55,178 copying onecodex/notebooks/report.py -> build/lib/onecodex/notebooks 2025-10-14T20:19:55,180 copying onecodex/notebooks/exporters.py -> build/lib/onecodex/notebooks 2025-10-14T20:19:55,183 creating build/lib/onecodex/scripts 2025-10-14T20:19:55,184 copying onecodex/scripts/__init__.py -> build/lib/onecodex/scripts 2025-10-14T20:19:55,186 copying onecodex/scripts/subset_reads.py -> build/lib/onecodex/scripts 2025-10-14T20:19:55,189 creating build/lib/onecodex/models 2025-10-14T20:19:55,190 copying onecodex/models/__init__.py -> build/lib/onecodex/models 2025-10-14T20:19:55,193 copying onecodex/models/misc.py -> build/lib/onecodex/models 2025-10-14T20:19:55,195 copying onecodex/models/genome.py -> build/lib/onecodex/models 2025-10-14T20:19:55,197 copying onecodex/models/helpers.py -> build/lib/onecodex/models 2025-10-14T20:19:55,200 copying onecodex/models/collection.py -> build/lib/onecodex/models 2025-10-14T20:19:55,202 copying onecodex/models/analysis.py -> build/lib/onecodex/models 2025-10-14T20:19:55,205 copying onecodex/models/base.py -> build/lib/onecodex/models 2025-10-14T20:19:55,208 copying onecodex/models/sample.py -> build/lib/onecodex/models 2025-10-14T20:19:55,211 creating build/lib/onecodex/models/schemas 2025-10-14T20:19:55,212 copying onecodex/models/schemas/__init__.py -> build/lib/onecodex/models/schemas 2025-10-14T20:19:55,214 copying onecodex/models/schemas/misc.py -> build/lib/onecodex/models/schemas 2025-10-14T20:19:55,217 copying onecodex/models/schemas/genome.py -> build/lib/onecodex/models/schemas 2025-10-14T20:19:55,219 copying onecodex/models/schemas/analysis.py -> build/lib/onecodex/models/schemas 2025-10-14T20:19:55,221 copying onecodex/models/schemas/base.py -> build/lib/onecodex/models/schemas 2025-10-14T20:19:55,223 copying onecodex/models/schemas/sample.py -> build/lib/onecodex/models/schemas 2025-10-14T20:19:55,226 copying onecodex/models/schemas/types.py -> build/lib/onecodex/models/schemas 2025-10-14T20:19:55,229 running egg_info 2025-10-14T20:19:55,243 writing onecodex.egg-info/PKG-INFO 2025-10-14T20:19:55,256 writing dependency_links to onecodex.egg-info/dependency_links.txt 2025-10-14T20:19:55,259 writing entry points to onecodex.egg-info/entry_points.txt 2025-10-14T20:19:55,267 writing requirements to onecodex.egg-info/requires.txt 2025-10-14T20:19:55,269 writing top-level names to onecodex.egg-info/top_level.txt 2025-10-14T20:19:55,312 listing git files failed - pretending there aren't any 2025-10-14T20:19:55,319 reading manifest file 'onecodex.egg-info/SOURCES.txt' 2025-10-14T20:19:55,329 reading manifest template 'MANIFEST.in' 2025-10-14T20:19:55,332 warning: no files found matching 'pytest.ini' 2025-10-14T20:19:55,333 warning: no directories found matching 'licenses' 2025-10-14T20:19:55,333 adding license file 'LICENSE' 2025-10-14T20:19:55,342 writing manifest file 'onecodex.egg-info/SOURCES.txt' 2025-10-14T20:19:55,355 copying docs/.gitignore -> build/lib/docs 2025-10-14T20:19:55,357 copying docs/Makefile -> build/lib/docs 2025-10-14T20:19:55,359 copying docs/index.rst -> build/lib/docs 2025-10-14T20:19:55,362 copying docs/models.rst -> build/lib/docs 2025-10-14T20:19:55,364 copying docs/notebooks.rst -> build/lib/docs 2025-10-14T20:19:55,366 copying docs/readme.md -> build/lib/docs 2025-10-14T20:19:55,369 copying docs/requirements.txt -> build/lib/docs 2025-10-14T20:19:55,371 copying docs/sample_collection.rst -> build/lib/docs 2025-10-14T20:19:55,373 copying docs/statistics.rst -> build/lib/docs 2025-10-14T20:19:55,376 copying docs/taxonomy.rst -> build/lib/docs 2025-10-14T20:19:55,378 copying docs/visualization.rst -> build/lib/docs 2025-10-14T20:19:55,380 creating build/lib/notebook_examples 2025-10-14T20:19:55,382 copying notebook_examples/example.ipynb -> build/lib/notebook_examples 2025-10-14T20:19:55,385 copying notebook_examples/notebooks_demo.ipynb -> build/lib/notebook_examples 2025-10-14T20:19:55,388 creating build/lib/onecodex/assets 2025-10-14T20:19:55,390 copying onecodex/assets/notebook_template.css -> build/lib/onecodex/assets 2025-10-14T20:19:55,393 copying onecodex/assets/notebook_template.scss -> build/lib/onecodex/assets 2025-10-14T20:19:55,396 copying onecodex/assets/notebook_template.tpl -> build/lib/onecodex/assets 2025-10-14T20:19:55,398 copying onecodex/assets/one_codex_logo.png -> build/lib/onecodex/assets 2025-10-14T20:19:55,402 creating build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,403 copying onecodex/assets/fonts/FiraSans-Light.otf -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,410 copying onecodex/assets/fonts/FiraSans-Light.woff2 -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,415 copying onecodex/assets/fonts/FiraSans-LightItalic.otf -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,423 copying onecodex/assets/fonts/FiraSans-LightItalic.woff2 -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,428 copying onecodex/assets/fonts/FiraSans-Medium.otf -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,435 copying onecodex/assets/fonts/FiraSans-Medium.woff2 -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,440 copying onecodex/assets/fonts/FiraSans-MediumItalic.otf -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,448 copying onecodex/assets/fonts/FiraSans-MediumItalic.woff2 -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,452 copying onecodex/assets/fonts/FiraSans-Regular.otf -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,459 copying onecodex/assets/fonts/FiraSans-Regular.woff2 -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,464 copying onecodex/assets/fonts/FiraSans-RegularItalic.otf -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,471 copying onecodex/assets/fonts/FiraSans-RegularItalic.woff2 -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,476 copying onecodex/assets/fonts/FiraSans-SemiBold.otf -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,483 copying onecodex/assets/fonts/FiraSans-SemiBold.woff2 -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,488 copying onecodex/assets/fonts/FiraSans-SemiBoldItalic.otf -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,495 copying onecodex/assets/fonts/FiraSans-SemiBoldItalic.woff2 -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,500 copying onecodex/assets/fonts/FiraSansCondensed-Regular.otf -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,503 copying onecodex/assets/fonts/FiraSansCondensed-RegularItalic.otf -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,507 copying onecodex/assets/fonts/FiraSansCondensed-SemiBold.otf -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,511 copying onecodex/assets/fonts/FiraSansCondensed-SemiboldItalic.otf -> build/lib/onecodex/assets/fonts 2025-10-14T20:19:55,514 creating build/lib/docs/notebook_examples 2025-10-14T20:19:55,515 copying docs/notebook_examples/notebooks_demo.ipynb -> build/lib/docs/notebook_examples 2025-10-14T20:19:55,518 creating build/lib/docs/_static 2025-10-14T20:19:55,519 copying docs/_static/one_codex_logo.png -> build/lib/docs/_static 2025-10-14T20:19:55,539 installing to build/bdist.linux-armv7l/wheel 2025-10-14T20:19:55,540 running install 2025-10-14T20:19:55,563 running install_lib 2025-10-14T20:19:55,570 creating build/bdist.linux-armv7l/wheel 2025-10-14T20:19:55,572 creating build/bdist.linux-armv7l/wheel/onecodex 2025-10-14T20:19:55,573 copying build/lib/onecodex/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex 2025-10-14T20:19:55,575 copying build/lib/onecodex/api.py -> build/bdist.linux-armv7l/wheel/./onecodex 2025-10-14T20:19:55,578 copying build/lib/onecodex/distance.py -> build/bdist.linux-armv7l/wheel/./onecodex 2025-10-14T20:19:55,580 copying build/lib/onecodex/auth.py -> build/bdist.linux-armv7l/wheel/./onecodex 2025-10-14T20:19:55,582 copying build/lib/onecodex/version.py -> build/bdist.linux-armv7l/wheel/./onecodex 2025-10-14T20:19:55,584 copying build/lib/onecodex/metadata_upload.py -> build/bdist.linux-armv7l/wheel/./onecodex 2025-10-14T20:19:55,586 copying build/lib/onecodex/input_helpers.py -> build/bdist.linux-armv7l/wheel/./onecodex 2025-10-14T20:19:55,588 copying build/lib/onecodex/analyses.py -> build/bdist.linux-armv7l/wheel/./onecodex 2025-10-14T20:19:55,591 creating build/bdist.linux-armv7l/wheel/onecodex/viz 2025-10-14T20:19:55,592 copying build/lib/onecodex/viz/_bargraph.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2025-10-14T20:19:55,594 copying build/lib/onecodex/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2025-10-14T20:19:55,597 copying build/lib/onecodex/viz/_heatmap.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2025-10-14T20:19:55,599 copying build/lib/onecodex/viz/_distance.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2025-10-14T20:19:55,602 copying build/lib/onecodex/viz/_primitives.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2025-10-14T20:19:55,604 copying build/lib/onecodex/viz/_functional.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2025-10-14T20:19:55,607 copying build/lib/onecodex/viz/_metadata.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2025-10-14T20:19:55,610 copying build/lib/onecodex/viz/_pca.py -> build/bdist.linux-armv7l/wheel/./onecodex/viz 2025-10-14T20:19:55,613 creating build/bdist.linux-armv7l/wheel/onecodex/lib 2025-10-14T20:19:55,614 copying build/lib/onecodex/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2025-10-14T20:19:55,616 copying build/lib/onecodex/lib/upload.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2025-10-14T20:19:55,619 copying build/lib/onecodex/lib/download.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2025-10-14T20:19:55,622 copying build/lib/onecodex/lib/enums.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2025-10-14T20:19:55,625 copying build/lib/onecodex/lib/auth.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2025-10-14T20:19:55,627 copying build/lib/onecodex/lib/files.py -> build/bdist.linux-armv7l/wheel/./onecodex/lib 2025-10-14T20:19:55,630 copying build/lib/onecodex/dataframes.py -> build/bdist.linux-armv7l/wheel/./onecodex 2025-10-14T20:19:55,633 copying build/lib/onecodex/utils.py -> build/bdist.linux-armv7l/wheel/./onecodex 2025-10-14T20:19:55,637 copying build/lib/onecodex/taxonomy.py -> build/bdist.linux-armv7l/wheel/./onecodex 2025-10-14T20:19:55,640 creating build/bdist.linux-armv7l/wheel/onecodex/assets 2025-10-14T20:19:55,642 copying build/lib/onecodex/assets/notebook_template.tpl -> build/bdist.linux-armv7l/wheel/./onecodex/assets 2025-10-14T20:19:55,645 creating build/bdist.linux-armv7l/wheel/onecodex/assets/fonts 2025-10-14T20:19:55,647 copying build/lib/onecodex/assets/fonts/FiraSansCondensed-Regular.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,652 copying build/lib/onecodex/assets/fonts/FiraSans-RegularItalic.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,662 copying build/lib/onecodex/assets/fonts/FiraSans-Regular.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,668 copying build/lib/onecodex/assets/fonts/FiraSans-MediumItalic.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,678 copying build/lib/onecodex/assets/fonts/FiraSansCondensed-SemiBold.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,683 copying build/lib/onecodex/assets/fonts/FiraSans-Medium.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,688 copying build/lib/onecodex/assets/fonts/FiraSans-SemiBoldItalic.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,698 copying build/lib/onecodex/assets/fonts/FiraSans-RegularItalic.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,702 copying build/lib/onecodex/assets/fonts/FiraSans-Regular.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,709 copying build/lib/onecodex/assets/fonts/FiraSansCondensed-SemiboldItalic.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,712 copying build/lib/onecodex/assets/fonts/FiraSans-Light.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,719 copying build/lib/onecodex/assets/fonts/FiraSans-Light.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,724 copying build/lib/onecodex/assets/fonts/FiraSans-LightItalic.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,731 copying build/lib/onecodex/assets/fonts/FiraSansCondensed-RegularItalic.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,734 copying build/lib/onecodex/assets/fonts/FiraSans-SemiBold.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,739 copying build/lib/onecodex/assets/fonts/FiraSans-Medium.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,748 copying build/lib/onecodex/assets/fonts/FiraSans-SemiBoldItalic.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,753 copying build/lib/onecodex/assets/fonts/FiraSans-SemiBold.otf -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,760 copying build/lib/onecodex/assets/fonts/FiraSans-MediumItalic.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,765 copying build/lib/onecodex/assets/fonts/FiraSans-LightItalic.woff2 -> build/bdist.linux-armv7l/wheel/./onecodex/assets/fonts 2025-10-14T20:19:55,770 copying build/lib/onecodex/assets/notebook_template.css -> build/bdist.linux-armv7l/wheel/./onecodex/assets 2025-10-14T20:19:55,772 copying build/lib/onecodex/assets/notebook_template.scss -> build/bdist.linux-armv7l/wheel/./onecodex/assets 2025-10-14T20:19:55,774 copying build/lib/onecodex/assets/one_codex_logo.png -> build/bdist.linux-armv7l/wheel/./onecodex/assets 2025-10-14T20:19:55,778 creating build/bdist.linux-armv7l/wheel/onecodex/notebooks 2025-10-14T20:19:55,779 copying build/lib/onecodex/notebooks/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/notebooks 2025-10-14T20:19:55,780 copying build/lib/onecodex/notebooks/report.py -> build/bdist.linux-armv7l/wheel/./onecodex/notebooks 2025-10-14T20:19:55,783 copying build/lib/onecodex/notebooks/exporters.py -> build/bdist.linux-armv7l/wheel/./onecodex/notebooks 2025-10-14T20:19:55,786 creating build/bdist.linux-armv7l/wheel/onecodex/scripts 2025-10-14T20:19:55,787 copying build/lib/onecodex/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/scripts 2025-10-14T20:19:55,788 copying build/lib/onecodex/scripts/subset_reads.py -> build/bdist.linux-armv7l/wheel/./onecodex/scripts 2025-10-14T20:19:55,791 copying build/lib/onecodex/cli.py -> build/bdist.linux-armv7l/wheel/./onecodex 2025-10-14T20:19:55,794 creating build/bdist.linux-armv7l/wheel/onecodex/models 2025-10-14T20:19:55,795 copying build/lib/onecodex/models/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2025-10-14T20:19:55,797 copying build/lib/onecodex/models/misc.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2025-10-14T20:19:55,799 copying build/lib/onecodex/models/genome.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2025-10-14T20:19:55,802 copying build/lib/onecodex/models/helpers.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2025-10-14T20:19:55,804 copying build/lib/onecodex/models/collection.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2025-10-14T20:19:55,806 copying build/lib/onecodex/models/analysis.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2025-10-14T20:19:55,809 copying build/lib/onecodex/models/base.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2025-10-14T20:19:55,811 copying build/lib/onecodex/models/sample.py -> build/bdist.linux-armv7l/wheel/./onecodex/models 2025-10-14T20:19:55,814 creating build/bdist.linux-armv7l/wheel/onecodex/models/schemas 2025-10-14T20:19:55,815 copying build/lib/onecodex/models/schemas/__init__.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2025-10-14T20:19:55,817 copying build/lib/onecodex/models/schemas/misc.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2025-10-14T20:19:55,819 copying build/lib/onecodex/models/schemas/genome.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2025-10-14T20:19:55,821 copying build/lib/onecodex/models/schemas/analysis.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2025-10-14T20:19:55,822 copying build/lib/onecodex/models/schemas/base.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2025-10-14T20:19:55,824 copying build/lib/onecodex/models/schemas/sample.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2025-10-14T20:19:55,826 copying build/lib/onecodex/models/schemas/types.py -> build/bdist.linux-armv7l/wheel/./onecodex/models/schemas 2025-10-14T20:19:55,828 copying build/lib/onecodex/stats.py -> build/bdist.linux-armv7l/wheel/./onecodex 2025-10-14T20:19:55,831 copying build/lib/onecodex/exceptions.py -> build/bdist.linux-armv7l/wheel/./onecodex 2025-10-14T20:19:55,833 creating build/bdist.linux-armv7l/wheel/docs 2025-10-14T20:19:55,835 copying build/lib/docs/Makefile -> build/bdist.linux-armv7l/wheel/./docs 2025-10-14T20:19:55,836 copying build/lib/docs/sample_collection.rst -> build/bdist.linux-armv7l/wheel/./docs 2025-10-14T20:19:55,838 copying build/lib/docs/taxonomy.rst -> build/bdist.linux-armv7l/wheel/./docs 2025-10-14T20:19:55,840 copying build/lib/docs/conf.py -> build/bdist.linux-armv7l/wheel/./docs 2025-10-14T20:19:55,842 copying build/lib/docs/readme.md -> build/bdist.linux-armv7l/wheel/./docs 2025-10-14T20:19:55,844 copying build/lib/docs/statistics.rst -> build/bdist.linux-armv7l/wheel/./docs 2025-10-14T20:19:55,845 copying build/lib/docs/requirements.txt -> build/bdist.linux-armv7l/wheel/./docs 2025-10-14T20:19:55,847 copying build/lib/docs/index.rst -> build/bdist.linux-armv7l/wheel/./docs 2025-10-14T20:19:55,849 copying build/lib/docs/notebooks.rst -> build/bdist.linux-armv7l/wheel/./docs 2025-10-14T20:19:55,851 creating build/bdist.linux-armv7l/wheel/docs/notebook_examples 2025-10-14T20:19:55,852 copying build/lib/docs/notebook_examples/notebooks_demo.ipynb -> build/bdist.linux-armv7l/wheel/./docs/notebook_examples 2025-10-14T20:19:55,854 copying build/lib/docs/.gitignore -> build/bdist.linux-armv7l/wheel/./docs 2025-10-14T20:19:55,856 copying build/lib/docs/models.rst -> build/bdist.linux-armv7l/wheel/./docs 2025-10-14T20:19:55,858 creating build/bdist.linux-armv7l/wheel/docs/_static 2025-10-14T20:19:55,859 copying build/lib/docs/_static/one_codex_logo.png -> build/bdist.linux-armv7l/wheel/./docs/_static 2025-10-14T20:19:55,862 copying build/lib/docs/visualization.rst -> build/bdist.linux-armv7l/wheel/./docs 2025-10-14T20:19:55,864 creating build/bdist.linux-armv7l/wheel/notebook_examples 2025-10-14T20:19:55,865 copying build/lib/notebook_examples/example.ipynb -> build/bdist.linux-armv7l/wheel/./notebook_examples 2025-10-14T20:19:55,867 copying build/lib/notebook_examples/notebooks_demo.ipynb -> build/bdist.linux-armv7l/wheel/./notebook_examples 2025-10-14T20:19:55,869 running install_egg_info 2025-10-14T20:19:55,876 Copying onecodex.egg-info to build/bdist.linux-armv7l/wheel/./onecodex-0.19.1-py3.11.egg-info 2025-10-14T20:19:55,890 running install_scripts 2025-10-14T20:19:55,902 creating build/bdist.linux-armv7l/wheel/onecodex-0.19.1.dist-info/WHEEL 2025-10-14T20:19:55,904 creating '/tmp/pip-wheel-jzd96a_3/.tmp-bnu97uh2/onecodex-0.19.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-10-14T20:19:55,906 adding 'docs/.gitignore' 2025-10-14T20:19:55,907 adding 'docs/Makefile' 2025-10-14T20:19:55,909 adding 'docs/conf.py' 2025-10-14T20:19:55,910 adding 'docs/index.rst' 2025-10-14T20:19:55,911 adding 'docs/models.rst' 2025-10-14T20:19:55,913 adding 'docs/notebooks.rst' 2025-10-14T20:19:55,914 adding 'docs/readme.md' 2025-10-14T20:19:55,915 adding 'docs/requirements.txt' 2025-10-14T20:19:55,916 adding 'docs/sample_collection.rst' 2025-10-14T20:19:55,917 adding 'docs/statistics.rst' 2025-10-14T20:19:55,918 adding 'docs/taxonomy.rst' 2025-10-14T20:19:55,920 adding 'docs/visualization.rst' 2025-10-14T20:19:55,923 adding 'docs/_static/one_codex_logo.png' 2025-10-14T20:19:55,926 adding 'docs/notebook_examples/notebooks_demo.ipynb' 2025-10-14T20:19:55,928 adding 'notebook_examples/example.ipynb' 2025-10-14T20:19:55,929 adding 'notebook_examples/notebooks_demo.ipynb' 2025-10-14T20:19:55,931 adding 'onecodex/__init__.py' 2025-10-14T20:19:55,935 adding 'onecodex/analyses.py' 2025-10-14T20:19:55,936 adding 'onecodex/api.py' 2025-10-14T20:19:55,938 adding 'onecodex/auth.py' 2025-10-14T20:19:55,940 adding 'onecodex/cli.py' 2025-10-14T20:19:55,942 adding 'onecodex/dataframes.py' 2025-10-14T20:19:55,944 adding 'onecodex/distance.py' 2025-10-14T20:19:55,945 adding 'onecodex/exceptions.py' 2025-10-14T20:19:55,947 adding 'onecodex/input_helpers.py' 2025-10-14T20:19:55,949 adding 'onecodex/metadata_upload.py' 2025-10-14T20:19:55,951 adding 'onecodex/stats.py' 2025-10-14T20:19:55,953 adding 'onecodex/taxonomy.py' 2025-10-14T20:19:55,955 adding 'onecodex/utils.py' 2025-10-14T20:19:55,957 adding 'onecodex/version.py' 2025-10-14T20:19:55,959 adding 'onecodex/assets/notebook_template.css' 2025-10-14T20:19:55,960 adding 'onecodex/assets/notebook_template.scss' 2025-10-14T20:19:55,961 adding 'onecodex/assets/notebook_template.tpl' 2025-10-14T20:19:55,964 adding 'onecodex/assets/one_codex_logo.png' 2025-10-14T20:19:56,008 adding 'onecodex/assets/fonts/FiraSans-Light.otf' 2025-10-14T20:19:56,023 adding 'onecodex/assets/fonts/FiraSans-Light.woff2' 2025-10-14T20:19:56,067 adding 'onecodex/assets/fonts/FiraSans-LightItalic.otf' 2025-10-14T20:19:56,083 adding 'onecodex/assets/fonts/FiraSans-LightItalic.woff2' 2025-10-14T20:19:56,127 adding 'onecodex/assets/fonts/FiraSans-Medium.otf' 2025-10-14T20:19:56,143 adding 'onecodex/assets/fonts/FiraSans-Medium.woff2' 2025-10-14T20:19:56,188 adding 'onecodex/assets/fonts/FiraSans-MediumItalic.otf' 2025-10-14T20:19:56,205 adding 'onecodex/assets/fonts/FiraSans-MediumItalic.woff2' 2025-10-14T20:19:56,246 adding 'onecodex/assets/fonts/FiraSans-Regular.otf' 2025-10-14T20:19:56,261 adding 'onecodex/assets/fonts/FiraSans-Regular.woff2' 2025-10-14T20:19:56,304 adding 'onecodex/assets/fonts/FiraSans-RegularItalic.otf' 2025-10-14T20:19:56,320 adding 'onecodex/assets/fonts/FiraSans-RegularItalic.woff2' 2025-10-14T20:19:56,365 adding 'onecodex/assets/fonts/FiraSans-SemiBold.otf' 2025-10-14T20:19:56,381 adding 'onecodex/assets/fonts/FiraSans-SemiBold.woff2' 2025-10-14T20:19:56,426 adding 'onecodex/assets/fonts/FiraSans-SemiBoldItalic.otf' 2025-10-14T20:19:56,443 adding 'onecodex/assets/fonts/FiraSans-SemiBoldItalic.woff2' 2025-10-14T20:19:56,454 adding 'onecodex/assets/fonts/FiraSansCondensed-Regular.otf' 2025-10-14T20:19:56,465 adding 'onecodex/assets/fonts/FiraSansCondensed-RegularItalic.otf' 2025-10-14T20:19:56,477 adding 'onecodex/assets/fonts/FiraSansCondensed-SemiBold.otf' 2025-10-14T20:19:56,488 adding 'onecodex/assets/fonts/FiraSansCondensed-SemiboldItalic.otf' 2025-10-14T20:19:56,490 adding 'onecodex/lib/__init__.py' 2025-10-14T20:19:56,491 adding 'onecodex/lib/auth.py' 2025-10-14T20:19:56,493 adding 'onecodex/lib/download.py' 2025-10-14T20:19:56,494 adding 'onecodex/lib/enums.py' 2025-10-14T20:19:56,496 adding 'onecodex/lib/files.py' 2025-10-14T20:19:56,498 adding 'onecodex/lib/upload.py' 2025-10-14T20:19:56,500 adding 'onecodex/models/__init__.py' 2025-10-14T20:19:56,502 adding 'onecodex/models/analysis.py' 2025-10-14T20:19:56,504 adding 'onecodex/models/base.py' 2025-10-14T20:19:56,508 adding 'onecodex/models/collection.py' 2025-10-14T20:19:56,509 adding 'onecodex/models/genome.py' 2025-10-14T20:19:56,511 adding 'onecodex/models/helpers.py' 2025-10-14T20:19:56,512 adding 'onecodex/models/misc.py' 2025-10-14T20:19:56,514 adding 'onecodex/models/sample.py' 2025-10-14T20:19:56,516 adding 'onecodex/models/schemas/__init__.py' 2025-10-14T20:19:56,517 adding 'onecodex/models/schemas/analysis.py' 2025-10-14T20:19:56,518 adding 'onecodex/models/schemas/base.py' 2025-10-14T20:19:56,520 adding 'onecodex/models/schemas/genome.py' 2025-10-14T20:19:56,521 adding 'onecodex/models/schemas/misc.py' 2025-10-14T20:19:56,522 adding 'onecodex/models/schemas/sample.py' 2025-10-14T20:19:56,524 adding 'onecodex/models/schemas/types.py' 2025-10-14T20:19:56,525 adding 'onecodex/notebooks/__init__.py' 2025-10-14T20:19:56,527 adding 'onecodex/notebooks/exporters.py' 2025-10-14T20:19:56,529 adding 'onecodex/notebooks/report.py' 2025-10-14T20:19:56,531 adding 'onecodex/scripts/__init__.py' 2025-10-14T20:19:56,533 adding 'onecodex/scripts/subset_reads.py' 2025-10-14T20:19:56,535 adding 'onecodex/viz/__init__.py' 2025-10-14T20:19:56,537 adding 'onecodex/viz/_bargraph.py' 2025-10-14T20:19:56,540 adding 'onecodex/viz/_distance.py' 2025-10-14T20:19:56,541 adding 'onecodex/viz/_functional.py' 2025-10-14T20:19:56,543 adding 'onecodex/viz/_heatmap.py' 2025-10-14T20:19:56,545 adding 'onecodex/viz/_metadata.py' 2025-10-14T20:19:56,547 adding 'onecodex/viz/_pca.py' 2025-10-14T20:19:56,549 adding 'onecodex/viz/_primitives.py' 2025-10-14T20:19:56,552 adding 'onecodex-0.19.1.dist-info/licenses/LICENSE' 2025-10-14T20:19:56,554 adding 'onecodex-0.19.1.dist-info/METADATA' 2025-10-14T20:19:56,555 adding 'onecodex-0.19.1.dist-info/WHEEL' 2025-10-14T20:19:56,556 adding 'onecodex-0.19.1.dist-info/entry_points.txt' 2025-10-14T20:19:56,557 adding 'onecodex-0.19.1.dist-info/top_level.txt' 2025-10-14T20:19:56,558 adding 'onecodex-0.19.1.dist-info/RECORD' 2025-10-14T20:19:56,589 removing build/bdist.linux-armv7l/wheel 2025-10-14T20:19:56,718 Building wheel for onecodex (pyproject.toml): finished with status 'done' 2025-10-14T20:19:56,785 Created wheel for onecodex: filename=onecodex-0.19.1-py3-none-any.whl size=2965948 sha256=59ff6dbb3dec2412924553998737f2d5d2ce872255d3ed59ce22be6de7b6eb51 2025-10-14T20:19:56,787 Stored in directory: /tmp/pip-ephem-wheel-cache-k6lzr5an/wheels/cb/ef/5e/31e6f7cae4275e7d74c44138805e5e002f1105bc6a7443bd3b 2025-10-14T20:19:56,804 Successfully built onecodex 2025-10-14T20:19:56,907 Removed build tracker: '/tmp/pip-build-tracker-2klu3h7x'