2025-10-15T09:40:10,433 Created temporary directory: /tmp/pip-build-tracker-f90zexbi 2025-10-15T09:40:10,434 Initialized build tracking at /tmp/pip-build-tracker-f90zexbi 2025-10-15T09:40:10,434 Created build tracker: /tmp/pip-build-tracker-f90zexbi 2025-10-15T09:40:10,434 Entered build tracker: /tmp/pip-build-tracker-f90zexbi 2025-10-15T09:40:10,434 Created temporary directory: /tmp/pip-wheel-gakwmpom 2025-10-15T09:40:10,438 Created temporary directory: /tmp/pip-ephem-wheel-cache-dhl__hwk 2025-10-15T09:40:10,502 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-15T09:40:10,504 2 location(s) to search for versions of forgi: 2025-10-15T09:40:10,504 * https://pypi.org/simple/forgi/ 2025-10-15T09:40:10,504 * https://www.piwheels.org/simple/forgi/ 2025-10-15T09:40:10,505 Fetching project page and analyzing links: https://pypi.org/simple/forgi/ 2025-10-15T09:40:10,505 Getting page https://pypi.org/simple/forgi/ 2025-10-15T09:40:10,506 Found index url https://pypi.org/simple/ 2025-10-15T09:40:10,655 Fetched page https://pypi.org/simple/forgi/ as application/vnd.pypi.simple.v1+json 2025-10-15T09:40:10,662 Skipping link: unsupported archive format: .exe: https://files.pythonhosted.org/packages/66/40/1e40afc410037da78b10b08eb1f681c3c4d4514abf774f93f255b9746b90/forgi-0.1.linux-x86_64.exe (from https://pypi.org/simple/forgi/) 2025-10-15T09:40:10,663 Found link https://files.pythonhosted.org/packages/e7/1a/d38508a857d7ac4c4e75464529fa9834bbaf96078e62d6b93e831c86c0bb/forgi-0.1.tar.gz (from https://pypi.org/simple/forgi/), version: 0.1 2025-10-15T09:40:10,663 Skipping link: unsupported archive format: .exe: https://files.pythonhosted.org/packages/26/0f/024735a6e6d3077c5bfb5cfc2c398a66d293e4a6192ee88357edbeb66f09/forgi-0.20.linux-x86_64.exe (from https://pypi.org/simple/forgi/) 2025-10-15T09:40:10,664 Found link https://files.pythonhosted.org/packages/f8/47/5b68cdb14c10ff946b7b53d130dbf644cdcb8663aee0f4a7a467094fa8e9/forgi-0.20.tar.gz (from https://pypi.org/simple/forgi/), version: 0.20 2025-10-15T09:40:10,664 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/e4/70/94d2e42b6a8f96fd38e57fe1d3cc05335ac2e7e3b6599223701321356e0e/forgi-1.0-py2.py3-none-any.whl (from https://pypi.org/simple/forgi/) 2025-10-15T09:40:10,664 Found link https://files.pythonhosted.org/packages/16/4e/a9b9cb9341a045b4febd75549314df78b7a09e801bdb835b10576b938b9d/forgi-1.0.tar.gz (from https://pypi.org/simple/forgi/), version: 1.0 2025-10-15T09:40:10,665 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/86/f7/812cba6327ac40a33d986b7d698a6d2193e64e7dfcd570abc6b4f86aede5/forgi-1.1-py2.py3-none-any.whl (from https://pypi.org/simple/forgi/) 2025-10-15T09:40:10,665 Found link https://files.pythonhosted.org/packages/61/29/273df63c66c18e8909aff10f66e9406f598f656659894405b1ad10b20654/forgi-1.1.tar.gz (from https://pypi.org/simple/forgi/), version: 1.1 2025-10-15T09:40:10,665 Found link https://files.pythonhosted.org/packages/69/94/583f97307ee7c68d8b3844c2171dd13d79aa64d38a4f05e7847bd7d98e28/forgi-2.0.1.tar.gz (from https://pypi.org/simple/forgi/), version: 2.0.1 2025-10-15T09:40:10,666 Found link https://files.pythonhosted.org/packages/ea/95/2fdfc3636ce7957d2581ef9813cd49af123afd718c4bcb41486dadd5babc/forgi-2.0.2.tar.gz (from https://pypi.org/simple/forgi/), version: 2.0.2 2025-10-15T09:40:10,666 Found link https://files.pythonhosted.org/packages/61/6d/54b072d5cb0acb992b981772e33d7f7a0dca1f4e7bbc1e5c799fa0eb380d/forgi-2.1.1.tar.gz (from https://pypi.org/simple/forgi/), version: 2.1.1 2025-10-15T09:40:10,667 Found link https://files.pythonhosted.org/packages/bb/50/206944d64095dd07960398f5d350a00c96e7f29689c64ae559292ba7cd20/forgi-2.1.2.tar.gz (from https://pypi.org/simple/forgi/), version: 2.1.2 2025-10-15T09:40:10,667 Found link https://files.pythonhosted.org/packages/cd/d8/31485b259d48619ff38ea6aa48ac2e5a04bd069a41846f2bc5b6b3d8b740/forgi-2.2.0.tar.gz (from https://pypi.org/simple/forgi/), version: 2.2.0 2025-10-15T09:40:10,667 Found link https://files.pythonhosted.org/packages/6b/6c/0767b9c276049346a1d6cc262d0adc99cda5a9eef64b590840677adf08ad/forgi-2.2.1.tar.gz (from https://pypi.org/simple/forgi/), version: 2.2.1 2025-10-15T09:40:10,668 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/41/96/74f23211eae17a7c2bd9b5683a4affa73e0197de09f081786c44839a3b86/forgi-2.2.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-10-15T09:40:10,668 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/c0/1f/80dfe394416cb3001586ef7f89203ea3e89ff4ecd27025927efeb6e52185/forgi-2.2.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-10-15T09:40:10,668 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/64/9e/ff9b8e397f4422341d493659e4fd298e257869eba6f42ef30b640f565c04/forgi-2.2.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-10-15T09:40:10,669 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/4d/87/785b11d57bf235cf35de5eae23b455a5281de184d08265a256a0c375bf39/forgi-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-10-15T09:40:10,669 Found link https://files.pythonhosted.org/packages/15/04/70c9e02d6c1cdd4a645f890411cc9cc346945d3fd4297c51185a883e042e/forgi-2.2.2.tar.gz (from https://pypi.org/simple/forgi/), version: 2.2.2 2025-10-15T09:40:10,669 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/d4/52/d6db1b63fa768fff0e8391993b1268b785f9937a6d3b5af76fdf3bfcf2db/forgi-2.2.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-10-15T09:40:10,670 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/9f/36/87d4606643d588a1a472e16b8365a20c4cfa83857b321b98e809d4597319/forgi-2.2.3-cp311-cp311-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-10-15T09:40:10,670 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/af/70/dea14557281b0a9427b9c6dd145bff00df18eeeb980634b6f14525326bff/forgi-2.2.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-10-15T09:40:10,670 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/c0/45/2c9cd672e2622ddba2323562db375783bb28dee1d9510ab70743d0308012/forgi-2.2.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-10-15T09:40:10,670 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/15/01/129655179fece949a98d94db022177c52af1a53d8db3a38d1beeb4009a94/forgi-2.2.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-10-15T09:40:10,671 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/1b/a1/d5082a78a51b95d3ce654c21b6e14101ab1b7dcb583ce63a56502918959a/forgi-2.2.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-10-15T09:40:10,671 Skipping link: No binaries permitted for forgi: https://files.pythonhosted.org/packages/77/d5/086e3c8d5be2b8478bc84090c7a7b5adfd0900f5ce7a4be0cbe6ca5eebea/forgi-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/forgi/) 2025-10-15T09:40:10,671 Found link https://files.pythonhosted.org/packages/52/6b/743f2dd63c17845cfac90ad996932c4da691c0a600b07b0937301b2933cb/forgi-2.2.3.tar.gz (from https://pypi.org/simple/forgi/), version: 2.2.3 2025-10-15T09:40:10,672 Fetching project page and analyzing links: https://www.piwheels.org/simple/forgi/ 2025-10-15T09:40:10,672 Getting page https://www.piwheels.org/simple/forgi/ 2025-10-15T09:40:10,673 Found index url https://www.piwheels.org/simple/ 2025-10-15T09:40:10,770 Fetched page https://www.piwheels.org/simple/forgi/ as text/html 2025-10-15T09:40:10,777 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.3-cp311-cp311-linux_armv6l.whl#sha256=b027f5e7b0f7b46db75366c151b91416ed29ef1f6190489eb63d081d71ff6a67 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,777 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.3-cp311-cp311-linux_armv7l.whl#sha256=b027f5e7b0f7b46db75366c151b91416ed29ef1f6190489eb63d081d71ff6a67 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,777 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.3-cp37-cp37m-linux_armv6l.whl#sha256=8468ee2dcd344b3bb6315e4406433334f1cd884c2787504fc8bbfc63c4ed6cf6 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,778 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.3-cp37-cp37m-linux_armv7l.whl#sha256=8468ee2dcd344b3bb6315e4406433334f1cd884c2787504fc8bbfc63c4ed6cf6 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,778 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.3-cp39-cp39-linux_armv6l.whl#sha256=16d857958089fdb4da47c7bcbdb6468c0ed18945fc6e9005e3e2a62cb2b0cda3 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,778 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.3-cp39-cp39-linux_armv7l.whl#sha256=16d857958089fdb4da47c7bcbdb6468c0ed18945fc6e9005e3e2a62cb2b0cda3 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,778 Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.2.3-cp313-cp313-linux_armv6l.whl#sha256=3d63bd1e07b16bc7bbe98f3a75bf83cf50d450d80d098ee62352b1be6d223978 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,778 Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.2.3-cp313-cp313-linux_armv7l.whl#sha256=3d63bd1e07b16bc7bbe98f3a75bf83cf50d450d80d098ee62352b1be6d223978 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,778 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.2-cp39-cp39-linux_armv6l.whl#sha256=5d0330ff6aa2005e316c859df18383e5edc15ef2a55219d65fbd44614699955f (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,778 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.2-cp39-cp39-linux_armv7l.whl#sha256=5d0330ff6aa2005e316c859df18383e5edc15ef2a55219d65fbd44614699955f (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,778 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.2-cp37-cp37m-linux_armv6l.whl#sha256=4fd5cad6f7136b0688788fb72048f1db223ca322d71fd82290526b5e24638e90 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,779 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.2-cp37-cp37m-linux_armv7l.whl#sha256=4fd5cad6f7136b0688788fb72048f1db223ca322d71fd82290526b5e24638e90 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,779 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.1-cp37-cp37m-linux_armv6l.whl#sha256=e18b86582585f10c731579fb798ccdd9c07b446511f4285502befb39c9e03ab1 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,779 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.1-cp37-cp37m-linux_armv7l.whl#sha256=e18b86582585f10c731579fb798ccdd9c07b446511f4285502befb39c9e03ab1 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,779 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.0-cp37-cp37m-linux_armv6l.whl#sha256=ccd711cccc31d4e49f3d8d88cc5459d7c6c496890a1e651df48a024e1a9675ae (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,779 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.2.0-cp37-cp37m-linux_armv7l.whl#sha256=ccd711cccc31d4e49f3d8d88cc5459d7c6c496890a1e651df48a024e1a9675ae (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,779 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.1.2-cp35-cp35m-linux_armv6l.whl#sha256=c2780f924bfbbbf78b23f481945f17f1232cf043138502c8a7242dd9c04310ba (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,779 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.1.2-cp35-cp35m-linux_armv7l.whl#sha256=c2780f924bfbbbf78b23f481945f17f1232cf043138502c8a7242dd9c04310ba (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,779 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.1.2-cp37-cp37m-linux_armv6l.whl#sha256=09ed6e7a446e5f1d34b68e7af188265e09b6bd4d51dc84c7d0d190a08966fb79 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,780 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.1.2-cp37-cp37m-linux_armv7l.whl#sha256=09ed6e7a446e5f1d34b68e7af188265e09b6bd4d51dc84c7d0d190a08966fb79 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,780 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.1.2-cp39-cp39-linux_armv6l.whl#sha256=4d8967854ad1577550cea92b6474561726648c605f63ab598218f7ee1c21b1ee (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,780 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.1.2-cp39-cp39-linux_armv7l.whl#sha256=4d8967854ad1577550cea92b6474561726648c605f63ab598218f7ee1c21b1ee (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,780 Skipping link: No binaries permitted for forgi: https://www.piwheels.org/simple/forgi/forgi-2.1.2-cp313-cp313-linux_armv6l.whl#sha256=bc49e7c03c0b590875d66e0f274ed0244251dc63dac3e335a9b8108322cb8c8d (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,780 Skipping link: No binaries permitted for forgi: 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https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,781 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.2-cp35-cp35m-linux_armv6l.whl#sha256=c74109d24a39f8eddaffb0933304aefa113c6828a6955ab5db29715f91ea8611 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,781 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.2-cp35-cp35m-linux_armv7l.whl#sha256=c74109d24a39f8eddaffb0933304aefa113c6828a6955ab5db29715f91ea8611 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,781 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.2-cp37-cp37m-linux_armv6l.whl#sha256=f26a2514fd959f03f692bd823ce87ed95de9f2769ddb5386a39afb945d7c7b17 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,781 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.2-cp37-cp37m-linux_armv7l.whl#sha256=f26a2514fd959f03f692bd823ce87ed95de9f2769ddb5386a39afb945d7c7b17 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,781 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.1-cp39-cp39-linux_armv6l.whl#sha256=e96b8376cebbb6f9a9b49d8d88a027e58f790aada95f37814c7cf8fab8f7a606 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,781 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.1-cp39-cp39-linux_armv7l.whl#sha256=e96b8376cebbb6f9a9b49d8d88a027e58f790aada95f37814c7cf8fab8f7a606 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,781 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.1-cp35-cp35m-linux_armv6l.whl#sha256=261b20a637cc9b006dcb9866174c2d3c4cfa0f0375bd1aa38950c8ccd867dcdd (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,781 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.1-cp35-cp35m-linux_armv7l.whl#sha256=261b20a637cc9b006dcb9866174c2d3c4cfa0f0375bd1aa38950c8ccd867dcdd (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,782 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.1-cp37-cp37m-linux_armv6l.whl#sha256=5917ef47b38ba9bd489d8299f12812ea7a17d8f10783e0fe4c4f184a2bae3018 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,782 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-2.0.1-cp37-cp37m-linux_armv7l.whl#sha256=5917ef47b38ba9bd489d8299f12812ea7a17d8f10783e0fe4c4f184a2bae3018 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,782 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-1.1-py2.py3-none-any.whl#sha256=a13ed8456dad061d5c5f05609847f58aa713a49993e7923dceadb036dfb92f54 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,782 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-1.0-py2.py3-none-any.whl#sha256=d5f6c5bad4475c9a6820816e07d9c2bea6ee364c9f45ea6214cc55e18513e381 (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,782 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-0.20-py3-none-any.whl#sha256=fe868f38af84d0ed687e6344436930f427f9d154975e10cac9d5ff634a40d16a (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,782 Skipping link: No binaries permitted for forgi: https://archive1.piwheels.org/simple/forgi/forgi-0.1-py3-none-any.whl#sha256=74cf37eb8412b8c4a6cc74b32257f5257d71148ad9051c4d9227b689036c1adf (from https://www.piwheels.org/simple/forgi/) 2025-10-15T09:40:10,782 Skipping link: not a file: https://www.piwheels.org/simple/forgi/ 2025-10-15T09:40:10,782 Skipping link: not a file: https://pypi.org/simple/forgi/ 2025-10-15T09:40:10,810 Given no hashes to check 1 links for project 'forgi': discarding no candidates 2025-10-15T09:40:10,811 Collecting forgi==2.0.1 2025-10-15T09:40:10,813 Created temporary directory: /tmp/pip-unpack-rspacv53 2025-10-15T09:40:10,956 Downloading forgi-2.0.1.tar.gz (26.6 MB) 2025-10-15T09:40:16,318 Added forgi==2.0.1 from https://files.pythonhosted.org/packages/69/94/583f97307ee7c68d8b3844c2171dd13d79aa64d38a4f05e7847bd7d98e28/forgi-2.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-f90zexbi' 2025-10-15T09:40:16,320 Running setup.py (path:/tmp/pip-wheel-gakwmpom/forgi_e5b097a1f952401680191550fc34401f/setup.py) egg_info for package forgi 2025-10-15T09:40:16,320 Created temporary directory: /tmp/pip-pip-egg-info-gna3kkfe 2025-10-15T09:40:16,320 Preparing metadata (setup.py): started 2025-10-15T09:40:16,321 Running command python setup.py egg_info 2025-10-15T09:40:17,149 fatal: not a git repository (or any parent up to mount point /) 2025-10-15T09:40:17,150 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-10-15T09:40:18,503 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-15T09:40:18,503 !! 2025-10-15T09:40:18,504 ******************************************************************************** 2025-10-15T09:40:18,504 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-15T09:40:18,504 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-10-15T09:40:18,504 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-15T09:40:18,504 ******************************************************************************** 2025-10-15T09:40:18,504 !! 2025-10-15T09:40:18,505 self._finalize_license_expression() 2025-10-15T09:40:18,578 INFO:root:running egg_info 2025-10-15T09:40:18,653 INFO:root:creating /tmp/pip-pip-egg-info-gna3kkfe/forgi.egg-info 2025-10-15T09:40:18,654 INFO:root:writing /tmp/pip-pip-egg-info-gna3kkfe/forgi.egg-info/PKG-INFO 2025-10-15T09:40:18,659 INFO:root:writing dependency_links to /tmp/pip-pip-egg-info-gna3kkfe/forgi.egg-info/dependency_links.txt 2025-10-15T09:40:18,662 INFO:root:writing requirements to /tmp/pip-pip-egg-info-gna3kkfe/forgi.egg-info/requires.txt 2025-10-15T09:40:18,662 INFO:root:writing top-level names to /tmp/pip-pip-egg-info-gna3kkfe/forgi.egg-info/top_level.txt 2025-10-15T09:40:18,662 INFO:root:writing manifest file '/tmp/pip-pip-egg-info-gna3kkfe/forgi.egg-info/SOURCES.txt' 2025-10-15T09:40:18,892 INFO:root:reading manifest file '/tmp/pip-pip-egg-info-gna3kkfe/forgi.egg-info/SOURCES.txt' 2025-10-15T09:40:18,893 INFO:root:adding license file 'LICENSE' 2025-10-15T09:40:18,893 INFO:root:adding license file 'CREDITS' 2025-10-15T09:40:18,898 INFO:root:writing manifest file '/tmp/pip-pip-egg-info-gna3kkfe/forgi.egg-info/SOURCES.txt' 2025-10-15T09:40:19,073 Preparing metadata (setup.py): finished with status 'done' 2025-10-15T09:40:19,078 Source in /tmp/pip-wheel-gakwmpom/forgi_e5b097a1f952401680191550fc34401f has version 2.0.1, which satisfies requirement forgi==2.0.1 from https://files.pythonhosted.org/packages/69/94/583f97307ee7c68d8b3844c2171dd13d79aa64d38a4f05e7847bd7d98e28/forgi-2.0.1.tar.gz 2025-10-15T09:40:19,079 Removed forgi==2.0.1 from https://files.pythonhosted.org/packages/69/94/583f97307ee7c68d8b3844c2171dd13d79aa64d38a4f05e7847bd7d98e28/forgi-2.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-f90zexbi' 2025-10-15T09:40:19,088 Created temporary directory: /tmp/pip-unpack-_zi_91p7 2025-10-15T09:40:19,088 Created temporary directory: /tmp/pip-unpack-qpw78q3h 2025-10-15T09:40:19,088 Building wheels for collected packages: forgi 2025-10-15T09:40:19,090 Created temporary directory: /tmp/pip-wheel-znhusugb 2025-10-15T09:40:19,090 DEPRECATION: Building 'forgi' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'forgi'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-10-15T09:40:19,091 Building wheel for forgi (setup.py): started 2025-10-15T09:40:19,092 Destination directory: /tmp/pip-wheel-znhusugb 2025-10-15T09:40:19,092 Running command python setup.py bdist_wheel 2025-10-15T09:40:19,889 fatal: not a git repository (or any parent up to mount point /) 2025-10-15T09:40:19,889 Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). 2025-10-15T09:40:20,864 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-15T09:40:20,865 !! 2025-10-15T09:40:20,865 ******************************************************************************** 2025-10-15T09:40:20,865 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-15T09:40:20,865 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-10-15T09:40:20,865 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-15T09:40:20,865 ******************************************************************************** 2025-10-15T09:40:20,866 !! 2025-10-15T09:40:20,866 self._finalize_license_expression() 2025-10-15T09:40:20,866 INFO:root:running bdist_wheel 2025-10-15T09:40:21,155 INFO:root:running build 2025-10-15T09:40:21,156 INFO:root:running build_py 2025-10-15T09:40:21,157 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi 2025-10-15T09:40:21,157 INFO:root:copying forgi/whitelist.py -> build/lib.linux-armv7l-cpython-313/forgi 2025-10-15T09:40:21,158 INFO:root:copying forgi/config.py -> build/lib.linux-armv7l-cpython-313/forgi 2025-10-15T09:40:21,159 INFO:root:copying forgi/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi 2025-10-15T09:40:21,159 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/graph 2025-10-15T09:40:21,160 INFO:root:copying forgi/graph/transform_graphs.py -> build/lib.linux-armv7l-cpython-313/forgi/graph 2025-10-15T09:40:21,160 INFO:root:copying forgi/graph/sequence.py -> build/lib.linux-armv7l-cpython-313/forgi/graph 2025-10-15T09:40:21,161 INFO:root:copying forgi/graph/residue.py -> build/lib.linux-armv7l-cpython-313/forgi/graph 2025-10-15T09:40:21,161 INFO:root:copying forgi/graph/bulge_graph.py -> build/lib.linux-armv7l-cpython-313/forgi/graph 2025-10-15T09:40:21,162 INFO:root:copying forgi/graph/_graph_construction.py -> build/lib.linux-armv7l-cpython-313/forgi/graph 2025-10-15T09:40:21,163 INFO:root:copying forgi/graph/_cofold.py -> build/lib.linux-armv7l-cpython-313/forgi/graph 2025-10-15T09:40:21,164 INFO:root:copying forgi/graph/_basegraph.py -> build/lib.linux-armv7l-cpython-313/forgi/graph 2025-10-15T09:40:21,164 INFO:root:copying forgi/graph/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/graph 2025-10-15T09:40:21,165 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/threedee 2025-10-15T09:40:21,165 INFO:root:copying forgi/threedee/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee 2025-10-15T09:40:21,166 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-10-15T09:40:21,166 INFO:root:copying forgi/threedee/model/transform_cg.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-10-15T09:40:21,167 INFO:root:copying forgi/threedee/model/stats.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-10-15T09:40:21,167 INFO:root:copying forgi/threedee/model/similarity.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-10-15T09:40:21,168 INFO:root:copying forgi/threedee/model/linecloud.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-10-15T09:40:21,168 INFO:root:copying forgi/threedee/model/descriptors.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-10-15T09:40:21,169 INFO:root:copying forgi/threedee/model/coarse_grain.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-10-15T09:40:21,170 INFO:root:copying forgi/threedee/model/_ensemble2.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-10-15T09:40:21,170 INFO:root:copying forgi/threedee/model/_ensemble.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-10-15T09:40:21,171 INFO:root:copying forgi/threedee/model/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/model 2025-10-15T09:40:21,172 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-10-15T09:40:21,172 INFO:root:copying forgi/utilities/stuff.py -> build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-10-15T09:40:21,173 INFO:root:copying forgi/utilities/observedDict.py -> build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-10-15T09:40:21,173 INFO:root:copying forgi/utilities/numbered_dotbracket.py -> build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-10-15T09:40:21,174 INFO:root:copying forgi/utilities/graph.py -> build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-10-15T09:40:21,174 INFO:root:copying forgi/utilities/exceptions.py -> build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-10-15T09:40:21,175 INFO:root:copying forgi/utilities/debug.py -> build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-10-15T09:40:21,175 INFO:root:copying forgi/utilities/commandline_utils.py -> build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-10-15T09:40:21,176 INFO:root:copying forgi/utilities/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/utilities 2025-10-15T09:40:21,177 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-10-15T09:40:21,177 INFO:root:copying forgi/threedee/utilities/virtual_residues.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-10-15T09:40:21,177 INFO:root:copying forgi/threedee/utilities/vector.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-10-15T09:40:21,178 INFO:root:copying forgi/threedee/utilities/pdb.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-10-15T09:40:21,179 INFO:root:copying forgi/threedee/utilities/my_math.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-10-15T09:40:21,179 INFO:root:copying forgi/threedee/utilities/modified_res_lookup.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-10-15T09:40:21,180 INFO:root:copying forgi/threedee/utilities/modified_res.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-10-15T09:40:21,181 INFO:root:copying forgi/threedee/utilities/mcannotate.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-10-15T09:40:21,181 INFO:root:copying forgi/threedee/utilities/graph_pdb.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-10-15T09:40:21,182 INFO:root:copying forgi/threedee/utilities/cytvec_setup.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-10-15T09:40:21,183 INFO:root:copying forgi/threedee/utilities/average_stem_vres_atom_positions.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-10-15T09:40:21,183 INFO:root:copying forgi/threedee/utilities/_dssr.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-10-15T09:40:21,184 INFO:root:copying forgi/threedee/utilities/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-10-15T09:40:21,184 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/threedee/classification 2025-10-15T09:40:21,185 INFO:root:copying forgi/threedee/classification/aminor.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/classification 2025-10-15T09:40:21,185 INFO:root:copying forgi/threedee/classification/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/classification 2025-10-15T09:40:21,186 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/threedee/classification/_training 2025-10-15T09:40:21,186 INFO:root:copying forgi/threedee/classification/_training/train_aminor.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/classification/_training 2025-10-15T09:40:21,187 INFO:root:copying forgi/threedee/classification/_training/aminor_training.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/classification/_training 2025-10-15T09:40:21,187 INFO:root:copying forgi/threedee/classification/_training/_parse_utils.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/classification/_training 2025-10-15T09:40:21,188 INFO:root:copying forgi/threedee/classification/_training/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/classification/_training 2025-10-15T09:40:21,189 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone 2025-10-15T09:40:21,189 INFO:root:copying forgi/_k2n_standalone/rna2d.py -> build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone 2025-10-15T09:40:21,190 INFO:root:copying forgi/_k2n_standalone/output.py -> build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone 2025-10-15T09:40:21,190 INFO:root:copying forgi/_k2n_standalone/knotted2nested.py -> build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone 2025-10-15T09:40:21,191 INFO:root:copying forgi/_k2n_standalone/knots.py -> build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone 2025-10-15T09:40:21,192 INFO:root:copying forgi/_k2n_standalone/dict2d.py -> build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone 2025-10-15T09:40:21,192 INFO:root:copying forgi/_k2n_standalone/ct_simple.py -> build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone 2025-10-15T09:40:21,193 INFO:root:copying forgi/_k2n_standalone/bpseq.py -> build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone 2025-10-15T09:40:21,193 INFO:root:copying forgi/_k2n_standalone/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/_k2n_standalone 2025-10-15T09:40:21,194 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/threedee/visual 2025-10-15T09:40:21,194 INFO:root:copying forgi/threedee/visual/pymol.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/visual 2025-10-15T09:40:21,195 INFO:root:copying forgi/threedee/visual/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/threedee/visual 2025-10-15T09:40:21,195 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/visual 2025-10-15T09:40:21,196 INFO:root:copying forgi/visual/mplotlib.py -> build/lib.linux-armv7l-cpython-313/forgi/visual 2025-10-15T09:40:21,196 INFO:root:copying forgi/visual/fornac.py -> build/lib.linux-armv7l-cpython-313/forgi/visual 2025-10-15T09:40:21,197 INFO:root:copying forgi/visual/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/visual 2025-10-15T09:40:21,197 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/projection 2025-10-15T09:40:21,198 INFO:root:copying forgi/projection/projection2d.py -> build/lib.linux-armv7l-cpython-313/forgi/projection 2025-10-15T09:40:21,198 INFO:root:copying forgi/projection/hausdorff.py -> build/lib.linux-armv7l-cpython-313/forgi/projection 2025-10-15T09:40:21,199 INFO:root:copying forgi/projection/__init__.py -> build/lib.linux-armv7l-cpython-313/forgi/projection 2025-10-15T09:40:21,206 INFO:root:creating build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,206 INFO:root:copying forgi/threedee/data/ideal_1_9_10_18.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,207 INFO:root:copying forgi/threedee/data/ideal_1_8_9_16.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,207 INFO:root:copying forgi/threedee/data/ideal_1_7_8_14.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,208 INFO:root:copying forgi/threedee/data/ideal_1_6_7_12.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,208 INFO:root:copying forgi/threedee/data/ideal_1_5_6_10.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,209 INFO:root:copying forgi/threedee/data/ideal_1_4_5_8.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,210 INFO:root:copying forgi/threedee/data/ideal_1_40_41_80.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,211 INFO:root:copying forgi/threedee/data/ideal_1_3_4_6.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,211 INFO:root:copying forgi/threedee/data/ideal_1_39_40_78.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,212 INFO:root:copying forgi/threedee/data/ideal_1_38_39_76.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,213 INFO:root:copying forgi/threedee/data/ideal_1_37_38_74.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,215 INFO:root:copying forgi/threedee/data/ideal_1_36_37_72.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,216 INFO:root:copying forgi/threedee/data/ideal_1_35_36_70.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,217 INFO:root:copying forgi/threedee/data/ideal_1_34_35_68.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,218 INFO:root:copying forgi/threedee/data/ideal_1_33_34_66.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,219 INFO:root:copying forgi/threedee/data/ideal_1_32_33_64.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,220 INFO:root:copying forgi/threedee/data/ideal_1_31_32_62.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,221 INFO:root:copying forgi/threedee/data/ideal_1_30_31_60.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,222 INFO:root:copying forgi/threedee/data/ideal_1_2_3_4.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,222 INFO:root:copying forgi/threedee/data/ideal_1_29_30_58.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,223 INFO:root:copying forgi/threedee/data/ideal_1_28_29_56.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,224 INFO:root:copying forgi/threedee/data/ideal_1_27_28_54.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,225 INFO:root:copying forgi/threedee/data/ideal_1_26_27_52.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,226 INFO:root:copying forgi/threedee/data/ideal_1_25_26_50.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,227 INFO:root:copying forgi/threedee/data/ideal_1_24_25_48.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,227 INFO:root:copying forgi/threedee/data/ideal_1_23_24_46.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,228 INFO:root:copying forgi/threedee/data/ideal_1_22_23_44.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,229 INFO:root:copying forgi/threedee/data/ideal_1_21_22_42.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,230 INFO:root:copying forgi/threedee/data/ideal_1_20_21_40.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,231 INFO:root:copying forgi/threedee/data/ideal_1_1_2_2.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,232 INFO:root:copying forgi/threedee/data/ideal_1_19_20_38.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,232 INFO:root:copying forgi/threedee/data/ideal_1_18_19_36.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,233 INFO:root:copying forgi/threedee/data/ideal_1_17_18_34.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,234 INFO:root:copying forgi/threedee/data/ideal_1_16_17_32.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,235 INFO:root:copying forgi/threedee/data/ideal_1_15_16_30.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,235 INFO:root:copying forgi/threedee/data/ideal_1_14_15_28.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,236 INFO:root:copying forgi/threedee/data/ideal_1_13_14_26.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,237 INFO:root:copying forgi/threedee/data/ideal_1_12_13_24.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,238 INFO:root:copying forgi/threedee/data/ideal_1_11_12_22.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,238 INFO:root:copying forgi/threedee/data/ideal_1_10_11_20.pdb -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,239 INFO:root:copying forgi/threedee/data/average_atom_positions.json -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,502 INFO:root:copying forgi/threedee/data/aminor_geometries.csv -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,586 INFO:root:copying forgi/threedee/data/aminor_params.json -> build/lib.linux-armv7l-cpython-313/forgi/threedee/data 2025-10-15T09:40:21,589 INFO:root:running build_ext 2025-10-15T09:40:21,599 INFO:root:building '' extension 2025-10-15T09:40:21,600 INFO:root:creating build/temp.linux-armv7l-cpython-313/forgi/threedee/utilities 2025-10-15T09:40:21,600 INFO:root:arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -I/usr/local/lib/python3.13/dist-packages/numpy/_core/include -I/usr/include/python3.13 -c forgi/threedee/utilities/cytvec.c -o build/temp.linux-armv7l-cpython-313/forgi/threedee/utilities/cytvec.o 2025-10-15T09:40:22,479 forgi/threedee/utilities/cytvec.c:215:12: fatal error: longintrepr.h: No such file or directory 2025-10-15T09:40:22,479 215 | #include "longintrepr.h" 2025-10-15T09:40:22,479 | ^~~~~~~~~~~~~~~ 2025-10-15T09:40:22,479 compilation terminated. 2025-10-15T09:40:22,486 WARNING:/tmp/pip-wheel-gakwmpom/forgi_e5b097a1f952401680191550fc34401f/setup.py:The C extension could not be compiled 2025-10-15T09:40:22,787 INFO:root:running bdist_wheel 2025-10-15T09:40:22,788 INFO:root:running build 2025-10-15T09:40:22,789 INFO:root:running build_py 2025-10-15T09:40:22,789 INFO:root:creating build/lib/forgi 2025-10-15T09:40:22,790 INFO:root:copying forgi/whitelist.py -> build/lib/forgi 2025-10-15T09:40:22,790 INFO:root:copying forgi/config.py -> build/lib/forgi 2025-10-15T09:40:22,791 INFO:root:copying forgi/__init__.py -> build/lib/forgi 2025-10-15T09:40:22,792 INFO:root:creating build/lib/forgi/graph 2025-10-15T09:40:22,792 INFO:root:copying forgi/graph/transform_graphs.py -> build/lib/forgi/graph 2025-10-15T09:40:22,792 INFO:root:copying forgi/graph/sequence.py -> build/lib/forgi/graph 2025-10-15T09:40:22,793 INFO:root:copying forgi/graph/residue.py -> build/lib/forgi/graph 2025-10-15T09:40:22,794 INFO:root:copying forgi/graph/bulge_graph.py -> build/lib/forgi/graph 2025-10-15T09:40:22,794 INFO:root:copying forgi/graph/_graph_construction.py -> build/lib/forgi/graph 2025-10-15T09:40:22,795 INFO:root:copying forgi/graph/_cofold.py -> build/lib/forgi/graph 2025-10-15T09:40:22,796 INFO:root:copying forgi/graph/_basegraph.py -> build/lib/forgi/graph 2025-10-15T09:40:22,796 INFO:root:copying forgi/graph/__init__.py -> build/lib/forgi/graph 2025-10-15T09:40:22,797 INFO:root:creating build/lib/forgi/threedee 2025-10-15T09:40:22,797 INFO:root:copying forgi/threedee/__init__.py -> build/lib/forgi/threedee 2025-10-15T09:40:22,798 INFO:root:creating build/lib/forgi/threedee/model 2025-10-15T09:40:22,798 INFO:root:copying forgi/threedee/model/transform_cg.py -> build/lib/forgi/threedee/model 2025-10-15T09:40:22,799 INFO:root:copying forgi/threedee/model/stats.py -> build/lib/forgi/threedee/model 2025-10-15T09:40:22,799 INFO:root:copying forgi/threedee/model/similarity.py -> build/lib/forgi/threedee/model 2025-10-15T09:40:22,800 INFO:root:copying forgi/threedee/model/linecloud.py -> build/lib/forgi/threedee/model 2025-10-15T09:40:22,800 INFO:root:copying forgi/threedee/model/descriptors.py -> build/lib/forgi/threedee/model 2025-10-15T09:40:22,801 INFO:root:copying forgi/threedee/model/coarse_grain.py -> build/lib/forgi/threedee/model 2025-10-15T09:40:22,802 INFO:root:copying forgi/threedee/model/_ensemble2.py -> build/lib/forgi/threedee/model 2025-10-15T09:40:22,802 INFO:root:copying forgi/threedee/model/_ensemble.py -> build/lib/forgi/threedee/model 2025-10-15T09:40:22,803 INFO:root:copying forgi/threedee/model/__init__.py -> build/lib/forgi/threedee/model 2025-10-15T09:40:22,804 INFO:root:creating build/lib/forgi/utilities 2025-10-15T09:40:22,804 INFO:root:copying forgi/utilities/stuff.py -> build/lib/forgi/utilities 2025-10-15T09:40:22,805 INFO:root:copying forgi/utilities/observedDict.py -> build/lib/forgi/utilities 2025-10-15T09:40:22,805 INFO:root:copying forgi/utilities/numbered_dotbracket.py -> build/lib/forgi/utilities 2025-10-15T09:40:22,806 INFO:root:copying forgi/utilities/graph.py -> build/lib/forgi/utilities 2025-10-15T09:40:22,806 INFO:root:copying forgi/utilities/exceptions.py -> build/lib/forgi/utilities 2025-10-15T09:40:22,807 INFO:root:copying forgi/utilities/debug.py -> build/lib/forgi/utilities 2025-10-15T09:40:22,807 INFO:root:copying forgi/utilities/commandline_utils.py -> build/lib/forgi/utilities 2025-10-15T09:40:22,808 INFO:root:copying forgi/utilities/__init__.py -> build/lib/forgi/utilities 2025-10-15T09:40:22,808 INFO:root:creating build/lib/forgi/threedee/utilities 2025-10-15T09:40:22,809 INFO:root:copying forgi/threedee/utilities/virtual_residues.py -> build/lib/forgi/threedee/utilities 2025-10-15T09:40:22,809 INFO:root:copying forgi/threedee/utilities/vector.py -> build/lib/forgi/threedee/utilities 2025-10-15T09:40:22,810 INFO:root:copying forgi/threedee/utilities/pdb.py -> build/lib/forgi/threedee/utilities 2025-10-15T09:40:22,811 INFO:root:copying forgi/threedee/utilities/my_math.py -> build/lib/forgi/threedee/utilities 2025-10-15T09:40:22,811 INFO:root:copying forgi/threedee/utilities/modified_res_lookup.py -> build/lib/forgi/threedee/utilities 2025-10-15T09:40:22,812 INFO:root:copying forgi/threedee/utilities/modified_res.py -> build/lib/forgi/threedee/utilities 2025-10-15T09:40:22,813 INFO:root:copying forgi/threedee/utilities/mcannotate.py -> build/lib/forgi/threedee/utilities 2025-10-15T09:40:22,813 INFO:root:copying forgi/threedee/utilities/graph_pdb.py -> build/lib/forgi/threedee/utilities 2025-10-15T09:40:22,814 INFO:root:copying forgi/threedee/utilities/cytvec_setup.py -> build/lib/forgi/threedee/utilities 2025-10-15T09:40:22,815 INFO:root:copying forgi/threedee/utilities/average_stem_vres_atom_positions.py -> build/lib/forgi/threedee/utilities 2025-10-15T09:40:22,815 INFO:root:copying forgi/threedee/utilities/_dssr.py -> build/lib/forgi/threedee/utilities 2025-10-15T09:40:22,816 INFO:root:copying forgi/threedee/utilities/__init__.py -> build/lib/forgi/threedee/utilities 2025-10-15T09:40:22,816 INFO:root:creating build/lib/forgi/threedee/classification 2025-10-15T09:40:22,817 INFO:root:copying forgi/threedee/classification/aminor.py -> build/lib/forgi/threedee/classification 2025-10-15T09:40:22,817 INFO:root:copying forgi/threedee/classification/__init__.py -> build/lib/forgi/threedee/classification 2025-10-15T09:40:22,818 INFO:root:creating build/lib/forgi/threedee/classification/_training 2025-10-15T09:40:22,818 INFO:root:copying forgi/threedee/classification/_training/train_aminor.py -> build/lib/forgi/threedee/classification/_training 2025-10-15T09:40:22,819 INFO:root:copying forgi/threedee/classification/_training/aminor_training.py -> build/lib/forgi/threedee/classification/_training 2025-10-15T09:40:22,819 INFO:root:copying forgi/threedee/classification/_training/_parse_utils.py -> build/lib/forgi/threedee/classification/_training 2025-10-15T09:40:22,820 INFO:root:copying forgi/threedee/classification/_training/__init__.py -> build/lib/forgi/threedee/classification/_training 2025-10-15T09:40:22,821 INFO:root:creating build/lib/forgi/_k2n_standalone 2025-10-15T09:40:22,821 INFO:root:copying forgi/_k2n_standalone/rna2d.py -> build/lib/forgi/_k2n_standalone 2025-10-15T09:40:22,821 INFO:root:copying forgi/_k2n_standalone/output.py -> build/lib/forgi/_k2n_standalone 2025-10-15T09:40:22,822 INFO:root:copying forgi/_k2n_standalone/knotted2nested.py -> build/lib/forgi/_k2n_standalone 2025-10-15T09:40:22,823 INFO:root:copying forgi/_k2n_standalone/knots.py -> build/lib/forgi/_k2n_standalone 2025-10-15T09:40:22,823 INFO:root:copying forgi/_k2n_standalone/dict2d.py -> build/lib/forgi/_k2n_standalone 2025-10-15T09:40:22,824 INFO:root:copying forgi/_k2n_standalone/ct_simple.py -> build/lib/forgi/_k2n_standalone 2025-10-15T09:40:22,824 INFO:root:copying forgi/_k2n_standalone/bpseq.py -> build/lib/forgi/_k2n_standalone 2025-10-15T09:40:22,825 INFO:root:copying forgi/_k2n_standalone/__init__.py -> build/lib/forgi/_k2n_standalone 2025-10-15T09:40:22,826 INFO:root:creating build/lib/forgi/threedee/visual 2025-10-15T09:40:22,826 INFO:root:copying forgi/threedee/visual/pymol.py -> build/lib/forgi/threedee/visual 2025-10-15T09:40:22,826 INFO:root:copying forgi/threedee/visual/__init__.py -> build/lib/forgi/threedee/visual 2025-10-15T09:40:22,827 INFO:root:creating build/lib/forgi/visual 2025-10-15T09:40:22,827 INFO:root:copying forgi/visual/mplotlib.py -> build/lib/forgi/visual 2025-10-15T09:40:22,828 INFO:root:copying forgi/visual/fornac.py -> build/lib/forgi/visual 2025-10-15T09:40:22,829 INFO:root:copying forgi/visual/__init__.py -> build/lib/forgi/visual 2025-10-15T09:40:22,829 INFO:root:creating build/lib/forgi/projection 2025-10-15T09:40:22,830 INFO:root:copying forgi/projection/projection2d.py -> build/lib/forgi/projection 2025-10-15T09:40:22,830 INFO:root:copying forgi/projection/hausdorff.py -> build/lib/forgi/projection 2025-10-15T09:40:22,831 INFO:root:copying forgi/projection/__init__.py -> build/lib/forgi/projection 2025-10-15T09:40:22,837 INFO:root:creating build/lib/forgi/threedee/data 2025-10-15T09:40:22,837 INFO:root:copying forgi/threedee/data/ideal_1_9_10_18.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,837 INFO:root:copying forgi/threedee/data/ideal_1_8_9_16.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,838 INFO:root:copying forgi/threedee/data/ideal_1_7_8_14.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,839 INFO:root:copying forgi/threedee/data/ideal_1_6_7_12.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,839 INFO:root:copying forgi/threedee/data/ideal_1_5_6_10.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,840 INFO:root:copying forgi/threedee/data/ideal_1_4_5_8.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,840 INFO:root:copying forgi/threedee/data/ideal_1_40_41_80.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,842 INFO:root:copying forgi/threedee/data/ideal_1_3_4_6.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,842 INFO:root:copying forgi/threedee/data/ideal_1_39_40_78.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,843 INFO:root:copying forgi/threedee/data/ideal_1_38_39_76.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,844 INFO:root:copying forgi/threedee/data/ideal_1_37_38_74.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,845 INFO:root:copying forgi/threedee/data/ideal_1_36_37_72.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,846 INFO:root:copying forgi/threedee/data/ideal_1_35_36_70.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,847 INFO:root:copying forgi/threedee/data/ideal_1_34_35_68.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,848 INFO:root:copying forgi/threedee/data/ideal_1_33_34_66.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,849 INFO:root:copying forgi/threedee/data/ideal_1_32_33_64.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,850 INFO:root:copying forgi/threedee/data/ideal_1_31_32_62.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,851 INFO:root:copying forgi/threedee/data/ideal_1_30_31_60.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,852 INFO:root:copying forgi/threedee/data/ideal_1_2_3_4.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,853 INFO:root:copying forgi/threedee/data/ideal_1_29_30_58.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,854 INFO:root:copying forgi/threedee/data/ideal_1_28_29_56.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,854 INFO:root:copying forgi/threedee/data/ideal_1_27_28_54.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,855 INFO:root:copying forgi/threedee/data/ideal_1_26_27_52.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,856 INFO:root:copying forgi/threedee/data/ideal_1_25_26_50.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,857 INFO:root:copying forgi/threedee/data/ideal_1_24_25_48.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,858 INFO:root:copying forgi/threedee/data/ideal_1_23_24_46.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,859 INFO:root:copying forgi/threedee/data/ideal_1_22_23_44.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,860 INFO:root:copying forgi/threedee/data/ideal_1_21_22_42.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,860 INFO:root:copying forgi/threedee/data/ideal_1_20_21_40.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,861 INFO:root:copying forgi/threedee/data/ideal_1_1_2_2.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,862 INFO:root:copying forgi/threedee/data/ideal_1_19_20_38.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,863 INFO:root:copying forgi/threedee/data/ideal_1_18_19_36.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,863 INFO:root:copying forgi/threedee/data/ideal_1_17_18_34.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,864 INFO:root:copying forgi/threedee/data/ideal_1_16_17_32.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,865 INFO:root:copying forgi/threedee/data/ideal_1_15_16_30.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,865 INFO:root:copying forgi/threedee/data/ideal_1_14_15_28.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,866 INFO:root:copying forgi/threedee/data/ideal_1_13_14_26.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,867 INFO:root:copying forgi/threedee/data/ideal_1_12_13_24.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,868 INFO:root:copying forgi/threedee/data/ideal_1_11_12_22.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,868 INFO:root:copying forgi/threedee/data/ideal_1_10_11_20.pdb -> build/lib/forgi/threedee/data 2025-10-15T09:40:22,869 INFO:root:copying forgi/threedee/data/average_atom_positions.json -> build/lib/forgi/threedee/data 2025-10-15T09:40:23,120 INFO:root:copying forgi/threedee/data/aminor_geometries.csv -> build/lib/forgi/threedee/data 2025-10-15T09:40:23,202 INFO:root:copying forgi/threedee/data/aminor_params.json -> build/lib/forgi/threedee/data 2025-10-15T09:40:23,205 INFO:root:running build_scripts 2025-10-15T09:40:23,206 INFO:root:creating build/scripts-3.13 2025-10-15T09:40:23,206 INFO:root:copying and adjusting examples/rnaConvert.py -> build/scripts-3.13 2025-10-15T09:40:23,207 INFO:root:copying and adjusting examples/describe_cg.py -> build/scripts-3.13 2025-10-15T09:40:23,207 INFO:root:copying and adjusting examples/compare_RNA.py -> build/scripts-3.13 2025-10-15T09:40:23,208 INFO:root:copying and adjusting examples/visualize_rna.py -> build/scripts-3.13 2025-10-15T09:40:23,208 INFO:root:copying and adjusting examples/pseudoknot_analyzer.py -> build/scripts-3.13 2025-10-15T09:40:23,210 INFO:root:copying and adjusting examples/forgi_config.py -> build/scripts-3.13 2025-10-15T09:40:23,210 INFO:root:changing mode of build/scripts-3.13/rnaConvert.py from 644 to 755 2025-10-15T09:40:23,210 INFO:root:changing mode of build/scripts-3.13/describe_cg.py from 644 to 755 2025-10-15T09:40:23,210 INFO:root:changing mode of build/scripts-3.13/compare_RNA.py from 644 to 755 2025-10-15T09:40:23,210 INFO:root:changing mode of build/scripts-3.13/visualize_rna.py from 644 to 755 2025-10-15T09:40:23,210 INFO:root:changing mode of build/scripts-3.13/pseudoknot_analyzer.py from 644 to 755 2025-10-15T09:40:23,210 INFO:root:changing mode of build/scripts-3.13/forgi_config.py from 644 to 755 2025-10-15T09:40:23,295 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-10-15T09:40:23,295 !! 2025-10-15T09:40:23,295 ******************************************************************************** 2025-10-15T09:40:23,295 Please avoid running ``setup.py`` directly. 2025-10-15T09:40:23,295 Instead, use pypa/build, pypa/installer or other 2025-10-15T09:40:23,296 standards-based tools. 2025-10-15T09:40:23,296 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-10-15T09:40:23,296 or your builds will no longer be supported. 2025-10-15T09:40:23,296 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-10-15T09:40:23,296 ******************************************************************************** 2025-10-15T09:40:23,296 !! 2025-10-15T09:40:23,296 self.initialize_options() 2025-10-15T09:40:23,369 INFO:root:installing to build/bdist.linux-armv7l/wheel 2025-10-15T09:40:23,369 INFO:root:running install 2025-10-15T09:40:23,392 INFO:root:running install_lib 2025-10-15T09:40:23,466 INFO:root:creating build/bdist.linux-armv7l/wheel 2025-10-15T09:40:23,467 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi 2025-10-15T09:40:23,467 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/projection 2025-10-15T09:40:23,468 INFO:root:copying build/lib/forgi/projection/__init__.py -> build/bdist.linux-armv7l/wheel/./forgi/projection 2025-10-15T09:40:23,468 INFO:root:copying build/lib/forgi/projection/hausdorff.py -> build/bdist.linux-armv7l/wheel/./forgi/projection 2025-10-15T09:40:23,469 INFO:root:copying build/lib/forgi/projection/projection2d.py -> build/bdist.linux-armv7l/wheel/./forgi/projection 2025-10-15T09:40:23,469 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/visual 2025-10-15T09:40:23,470 INFO:root:copying build/lib/forgi/visual/__init__.py -> build/bdist.linux-armv7l/wheel/./forgi/visual 2025-10-15T09:40:23,470 INFO:root:copying build/lib/forgi/visual/fornac.py -> build/bdist.linux-armv7l/wheel/./forgi/visual 2025-10-15T09:40:23,470 INFO:root:copying build/lib/forgi/visual/mplotlib.py -> build/bdist.linux-armv7l/wheel/./forgi/visual 2025-10-15T09:40:23,471 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/_k2n_standalone 2025-10-15T09:40:23,471 INFO:root:copying build/lib/forgi/_k2n_standalone/__init__.py -> build/bdist.linux-armv7l/wheel/./forgi/_k2n_standalone 2025-10-15T09:40:23,472 INFO:root:copying build/lib/forgi/_k2n_standalone/bpseq.py -> build/bdist.linux-armv7l/wheel/./forgi/_k2n_standalone 2025-10-15T09:40:23,472 INFO:root:copying build/lib/forgi/_k2n_standalone/ct_simple.py -> build/bdist.linux-armv7l/wheel/./forgi/_k2n_standalone 2025-10-15T09:40:23,472 INFO:root:copying build/lib/forgi/_k2n_standalone/dict2d.py -> build/bdist.linux-armv7l/wheel/./forgi/_k2n_standalone 2025-10-15T09:40:23,473 INFO:root:copying build/lib/forgi/_k2n_standalone/knots.py -> build/bdist.linux-armv7l/wheel/./forgi/_k2n_standalone 2025-10-15T09:40:23,474 INFO:root:copying build/lib/forgi/_k2n_standalone/knotted2nested.py -> build/bdist.linux-armv7l/wheel/./forgi/_k2n_standalone 2025-10-15T09:40:23,474 INFO:root:copying build/lib/forgi/_k2n_standalone/output.py -> build/bdist.linux-armv7l/wheel/./forgi/_k2n_standalone 2025-10-15T09:40:23,474 INFO:root:copying build/lib/forgi/_k2n_standalone/rna2d.py -> build/bdist.linux-armv7l/wheel/./forgi/_k2n_standalone 2025-10-15T09:40:23,475 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/utilities 2025-10-15T09:40:23,475 INFO:root:copying build/lib/forgi/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./forgi/utilities 2025-10-15T09:40:23,476 INFO:root:copying build/lib/forgi/utilities/commandline_utils.py -> build/bdist.linux-armv7l/wheel/./forgi/utilities 2025-10-15T09:40:23,476 INFO:root:copying build/lib/forgi/utilities/debug.py -> build/bdist.linux-armv7l/wheel/./forgi/utilities 2025-10-15T09:40:23,476 INFO:root:copying build/lib/forgi/utilities/exceptions.py -> build/bdist.linux-armv7l/wheel/./forgi/utilities 2025-10-15T09:40:23,477 INFO:root:copying build/lib/forgi/utilities/graph.py -> build/bdist.linux-armv7l/wheel/./forgi/utilities 2025-10-15T09:40:23,477 INFO:root:copying build/lib/forgi/utilities/numbered_dotbracket.py -> build/bdist.linux-armv7l/wheel/./forgi/utilities 2025-10-15T09:40:23,477 INFO:root:copying build/lib/forgi/utilities/observedDict.py -> build/bdist.linux-armv7l/wheel/./forgi/utilities 2025-10-15T09:40:23,478 INFO:root:copying build/lib/forgi/utilities/stuff.py -> build/bdist.linux-armv7l/wheel/./forgi/utilities 2025-10-15T09:40:23,478 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/threedee 2025-10-15T09:40:23,479 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/threedee/data 2025-10-15T09:40:23,479 INFO:root:copying build/lib/forgi/threedee/data/aminor_params.json -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,480 INFO:root:copying build/lib/forgi/threedee/data/aminor_geometries.csv -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,563 INFO:root:copying build/lib/forgi/threedee/data/average_atom_positions.json -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,826 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_10_11_20.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,827 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_11_12_22.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,827 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_12_13_24.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,828 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_13_14_26.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,828 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_14_15_28.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,829 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_15_16_30.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,830 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_16_17_32.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,830 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_17_18_34.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,831 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_18_19_36.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,831 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_19_20_38.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,832 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_1_2_2.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,832 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_20_21_40.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,833 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_21_22_42.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,834 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_22_23_44.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,834 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_23_24_46.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,835 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_24_25_48.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,836 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_25_26_50.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,836 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_26_27_52.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,837 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_27_28_54.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,838 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_28_29_56.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,839 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_29_30_58.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,839 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_2_3_4.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,840 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_30_31_60.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,841 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_31_32_62.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,841 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_32_33_64.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,842 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_33_34_66.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,843 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_34_35_68.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,844 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_35_36_70.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,845 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_36_37_72.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,845 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_37_38_74.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,846 INFO:root:copying build/lib/forgi/threedee/data/ideal_1_38_39_76.pdb -> build/bdist.linux-armv7l/wheel/./forgi/threedee/data 2025-10-15T09:40:23,847 INFO:root:copying 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build/bdist.linux-armv7l/wheel/./forgi/threedee/classification/_training 2025-10-15T09:40:23,855 INFO:root:copying build/lib/forgi/threedee/classification/_training/_parse_utils.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/classification/_training 2025-10-15T09:40:23,855 INFO:root:copying build/lib/forgi/threedee/classification/_training/aminor_training.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/classification/_training 2025-10-15T09:40:23,856 INFO:root:copying build/lib/forgi/threedee/classification/_training/train_aminor.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/classification/_training 2025-10-15T09:40:23,856 INFO:root:copying build/lib/forgi/threedee/classification/__init__.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/classification 2025-10-15T09:40:23,856 INFO:root:copying build/lib/forgi/threedee/classification/aminor.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/classification 2025-10-15T09:40:23,857 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/threedee/utilities 2025-10-15T09:40:23,857 INFO:root:copying build/lib/forgi/threedee/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/utilities 2025-10-15T09:40:23,858 INFO:root:copying build/lib/forgi/threedee/utilities/_dssr.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/utilities 2025-10-15T09:40:23,858 INFO:root:copying build/lib/forgi/threedee/utilities/average_stem_vres_atom_positions.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/utilities 2025-10-15T09:40:23,858 INFO:root:copying build/lib/forgi/threedee/utilities/cytvec_setup.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/utilities 2025-10-15T09:40:23,859 INFO:root:copying build/lib/forgi/threedee/utilities/graph_pdb.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/utilities 2025-10-15T09:40:23,859 INFO:root:copying build/lib/forgi/threedee/utilities/mcannotate.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/utilities 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build/bdist.linux-armv7l/wheel/forgi/threedee/model 2025-10-15T09:40:23,863 INFO:root:copying build/lib/forgi/threedee/model/__init__.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/model 2025-10-15T09:40:23,864 INFO:root:copying build/lib/forgi/threedee/model/_ensemble.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/model 2025-10-15T09:40:23,864 INFO:root:copying build/lib/forgi/threedee/model/_ensemble2.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/model 2025-10-15T09:40:23,865 INFO:root:copying build/lib/forgi/threedee/model/coarse_grain.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/model 2025-10-15T09:40:23,865 INFO:root:copying build/lib/forgi/threedee/model/descriptors.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/model 2025-10-15T09:40:23,866 INFO:root:copying build/lib/forgi/threedee/model/linecloud.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/model 2025-10-15T09:40:23,866 INFO:root:copying build/lib/forgi/threedee/model/similarity.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/model 2025-10-15T09:40:23,867 INFO:root:copying build/lib/forgi/threedee/model/stats.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/model 2025-10-15T09:40:23,867 INFO:root:copying build/lib/forgi/threedee/model/transform_cg.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee/model 2025-10-15T09:40:23,867 INFO:root:copying build/lib/forgi/threedee/__init__.py -> build/bdist.linux-armv7l/wheel/./forgi/threedee 2025-10-15T09:40:23,868 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi/graph 2025-10-15T09:40:23,868 INFO:root:copying build/lib/forgi/graph/__init__.py -> build/bdist.linux-armv7l/wheel/./forgi/graph 2025-10-15T09:40:23,869 INFO:root:copying build/lib/forgi/graph/_basegraph.py -> build/bdist.linux-armv7l/wheel/./forgi/graph 2025-10-15T09:40:23,869 INFO:root:copying build/lib/forgi/graph/_cofold.py -> build/bdist.linux-armv7l/wheel/./forgi/graph 2025-10-15T09:40:23,869 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install_data 2025-10-15T09:40:23,949 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi-2.0.1.data/data 2025-10-15T09:40:23,950 INFO:root:copying CREDITS -> build/bdist.linux-armv7l/wheel/forgi-2.0.1.data/data/. 2025-10-15T09:40:23,950 INFO:root:copying LICENSE -> build/bdist.linux-armv7l/wheel/forgi-2.0.1.data/data/. 2025-10-15T09:40:23,951 INFO:root:running install_egg_info 2025-10-15T09:40:24,036 INFO:root:running egg_info 2025-10-15T09:40:24,108 INFO:root:writing forgi.egg-info/PKG-INFO 2025-10-15T09:40:24,113 INFO:root:writing dependency_links to forgi.egg-info/dependency_links.txt 2025-10-15T09:40:24,116 INFO:root:writing requirements to forgi.egg-info/requires.txt 2025-10-15T09:40:24,116 INFO:root:writing top-level names to forgi.egg-info/top_level.txt 2025-10-15T09:40:24,199 INFO:root:reading manifest file 'forgi.egg-info/SOURCES.txt' 2025-10-15T09:40:24,206 INFO:root:adding license file 'LICENSE' 2025-10-15T09:40:24,206 INFO:root:adding license file 'CREDITS' 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build/bdist.linux-armv7l/wheel/forgi-2.0.1.data/scripts 2025-10-15T09:40:24,218 INFO:root:copying build/scripts-3.13/rnaConvert.py -> build/bdist.linux-armv7l/wheel/forgi-2.0.1.data/scripts 2025-10-15T09:40:24,218 INFO:root:changing mode of build/bdist.linux-armv7l/wheel/forgi-2.0.1.data/scripts/forgi_config.py to 755 2025-10-15T09:40:24,218 INFO:root:changing mode of build/bdist.linux-armv7l/wheel/forgi-2.0.1.data/scripts/pseudoknot_analyzer.py to 755 2025-10-15T09:40:24,218 INFO:root:changing mode of build/bdist.linux-armv7l/wheel/forgi-2.0.1.data/scripts/visualize_rna.py to 755 2025-10-15T09:40:24,218 INFO:root:changing mode of build/bdist.linux-armv7l/wheel/forgi-2.0.1.data/scripts/compare_RNA.py to 755 2025-10-15T09:40:24,218 INFO:root:changing mode of build/bdist.linux-armv7l/wheel/forgi-2.0.1.data/scripts/describe_cg.py to 755 2025-10-15T09:40:24,219 INFO:root:changing mode of build/bdist.linux-armv7l/wheel/forgi-2.0.1.data/scripts/rnaConvert.py to 755 2025-10-15T09:40:24,221 INFO:root:creating build/bdist.linux-armv7l/wheel/forgi-2.0.1.dist-info/WHEEL 2025-10-15T09:40:24,222 INFO:wheel:creating '/tmp/pip-wheel-znhusugb/forgi-2.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-10-15T09:40:24,224 INFO:wheel:adding 'forgi/__init__.py' 2025-10-15T09:40:24,224 INFO:wheel:adding 'forgi/config.py' 2025-10-15T09:40:24,225 INFO:wheel:adding 'forgi/whitelist.py' 2025-10-15T09:40:24,226 INFO:wheel:adding 'forgi/_k2n_standalone/__init__.py' 2025-10-15T09:40:24,227 INFO:wheel:adding 'forgi/_k2n_standalone/bpseq.py' 2025-10-15T09:40:24,228 INFO:wheel:adding 'forgi/_k2n_standalone/ct_simple.py' 2025-10-15T09:40:24,232 INFO:wheel:adding 'forgi/_k2n_standalone/dict2d.py' 2025-10-15T09:40:24,240 INFO:wheel:adding 'forgi/_k2n_standalone/knots.py' 2025-10-15T09:40:24,242 INFO:wheel:adding 'forgi/_k2n_standalone/knotted2nested.py' 2025-10-15T09:40:24,243 INFO:wheel:adding 'forgi/_k2n_standalone/output.py' 2025-10-15T09:40:24,245 INFO:wheel:adding 'forgi/_k2n_standalone/rna2d.py' 2025-10-15T09:40:24,245 INFO:wheel:adding 'forgi/graph/__init__.py' 2025-10-15T09:40:24,246 INFO:wheel:adding 'forgi/graph/_basegraph.py' 2025-10-15T09:40:24,248 INFO:wheel:adding 'forgi/graph/_cofold.py' 2025-10-15T09:40:24,250 INFO:wheel:adding 'forgi/graph/_graph_construction.py' 2025-10-15T09:40:24,262 INFO:wheel:adding 'forgi/graph/bulge_graph.py' 2025-10-15T09:40:24,263 INFO:wheel:adding 'forgi/graph/residue.py' 2025-10-15T09:40:24,267 INFO:wheel:adding 'forgi/graph/sequence.py' 2025-10-15T09:40:24,268 INFO:wheel:adding 'forgi/graph/transform_graphs.py' 2025-10-15T09:40:24,268 INFO:wheel:adding 'forgi/projection/__init__.py' 2025-10-15T09:40:24,271 INFO:wheel:adding 'forgi/projection/hausdorff.py' 2025-10-15T09:40:24,276 INFO:wheel:adding 'forgi/projection/projection2d.py' 2025-10-15T09:40:24,277 INFO:wheel:adding 'forgi/threedee/__init__.py' 2025-10-15T09:40:24,278 INFO:wheel:adding 'forgi/threedee/classification/__init__.py' 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2025-10-15T09:40:36,169 INFO:root:removing build/bdist.linux-armv7l/wheel 2025-10-15T09:40:36,205 INFO:/tmp/pip-wheel-gakwmpom/forgi_e5b097a1f952401680191550fc34401f/setup.py:Installed forgi without faster compiled C-code. 2025-10-15T09:40:36,385 Building wheel for forgi (setup.py): finished with status 'done' 2025-10-15T09:40:36,660 Created wheel for forgi: filename=forgi-2.0.1-py3-none-any.whl size=27258083 sha256=243090090e75895361f83ec86056751d171ff198876b8cbe7386f6fac033a7eb 2025-10-15T09:40:36,661 Stored in directory: /tmp/pip-ephem-wheel-cache-dhl__hwk/wheels/46/ac/3c/990c53c1928d0224f5526b8d8f2288acd5b1eaa9c004033b75 2025-10-15T09:40:36,673 Successfully built forgi 2025-10-15T09:40:36,729 Removed build tracker: '/tmp/pip-build-tracker-f90zexbi'