2025-10-15T10:42:25,967 Created temporary directory: /tmp/pip-ephem-wheel-cache-3wvb_gw6 2025-10-15T10:42:25,969 Created temporary directory: /tmp/pip-build-tracker-3hrtelu3 2025-10-15T10:42:25,970 Initialized build tracking at /tmp/pip-build-tracker-3hrtelu3 2025-10-15T10:42:25,970 Created build tracker: /tmp/pip-build-tracker-3hrtelu3 2025-10-15T10:42:25,971 Entered build tracker: /tmp/pip-build-tracker-3hrtelu3 2025-10-15T10:42:25,971 Created temporary directory: /tmp/pip-wheel-ufih5zrs 2025-10-15T10:42:25,975 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-15T10:42:25,977 Created temporary directory: /tmp/pip-ephem-wheel-cache-sc9oekne 2025-10-15T10:42:26,001 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-15T10:42:26,004 2 location(s) to search for versions of deeptime: 2025-10-15T10:42:26,004 * https://pypi.org/simple/deeptime/ 2025-10-15T10:42:26,004 * https://www.piwheels.org/simple/deeptime/ 2025-10-15T10:42:26,005 Fetching project page and analyzing links: https://pypi.org/simple/deeptime/ 2025-10-15T10:42:26,006 Getting page https://pypi.org/simple/deeptime/ 2025-10-15T10:42:26,007 Found index url https://pypi.org/simple 2025-10-15T10:42:26,215 Fetched page https://pypi.org/simple/deeptime/ as application/vnd.pypi.simple.v1+json 2025-10-15T10:42:26,227 Found link https://files.pythonhosted.org/packages/07/c4/b761099571753ebd6659deed4897791fc5fd3dd8c3f6c521db81f193909f/deeptime-0.0.0.tar.gz (from https://pypi.org/simple/deeptime/), version: 0.0.0 2025-10-15T10:42:26,228 Found link https://files.pythonhosted.org/packages/c6/86/815d4473eab8c36b40746c0a3d279c7e48a647682b838d05ea7c97bfd61f/deeptime-0.2.1.tar.gz (from https://pypi.org/simple/deeptime/), version: 0.2.1 2025-10-15T10:42:26,229 Found link https://files.pythonhosted.org/packages/ba/f4/f8e7c16012f20dac97a2e1e41ba8265b6f10e490ac21b24dd6137da0de23/deeptime-0.2.2.tar.gz (from https://pypi.org/simple/deeptime/), version: 0.2.2 2025-10-15T10:42:26,230 Found link https://files.pythonhosted.org/packages/ab/bc/6f2a26eae7bec6d4d24ab67bff7ab843d4c75b7c6395e8dbe913437a2501/deeptime-0.2.3.tar.gz (from https://pypi.org/simple/deeptime/) (requires-python:>= 3.6), version: 0.2.3 2025-10-15T10:42:26,231 Found link https://files.pythonhosted.org/packages/f3/52/46346b8e6c7b53d1315e10605c79b5e86b85ad42426a35a1e05d1f76d924/deeptime-0.2.4.tar.gz (from https://pypi.org/simple/deeptime/) (requires-python:>= 3.6), version: 0.2.4 2025-10-15T10:42:26,232 Found link https://files.pythonhosted.org/packages/a4/c4/4cb345a0e83ee8ecd6245933280524b04781638a113477eac4d0342dac17/deeptime-0.2.5.tar.gz (from https://pypi.org/simple/deeptime/) (requires-python:>= 3.6), version: 0.2.5 2025-10-15T10:42:26,233 Found link https://files.pythonhosted.org/packages/58/02/f69b89d4e6a4ded6dc5539d32b1615e6f85472b33ea2b26b8a3809060b4a/deeptime-0.2.6.tar.gz (from https://pypi.org/simple/deeptime/) (requires-python:>= 3.6), version: 0.2.6 2025-10-15T10:42:26,234 Found link https://files.pythonhosted.org/packages/62/68/9199459d80a21196a31958442c2de9b955473e1537198103b6c1548a8fad/deeptime-0.2.7.tar.gz (from https://pypi.org/simple/deeptime/) (requires-python:>= 3.6), version: 0.2.7 2025-10-15T10:42:26,235 Found link https://files.pythonhosted.org/packages/3c/6d/4f1918d7e21ca329f0ad7447d29ea6b4ec8ad78d9cbc2a784a7677563fb3/deeptime-0.2.8.tar.gz (from https://pypi.org/simple/deeptime/) (requires-python:>= 3.6), version: 0.2.8 2025-10-15T10:42:26,236 Found link https://files.pythonhosted.org/packages/26/8a/90d0bd3f1c0868f0470f6195c10d567ef3530155a83f37ee1e68a3e150da/deeptime-0.2.9.tar.gz (from https://pypi.org/simple/deeptime/) (requires-python:>= 3.6), version: 0.2.9 2025-10-15T10:42:26,237 Found link https://files.pythonhosted.org/packages/e1/5f/0c6e5759aa6f5d240aad3bb66096a92d6f9ed33c3ec94730983455e562ce/deeptime-0.3.0.tar.gz (from https://pypi.org/simple/deeptime/) (requires-python:>= 3.6), version: 0.3.0 2025-10-15T10:42:26,238 Found link https://files.pythonhosted.org/packages/5c/81/4c45ac48ff705f5035a3801e8c887fa14f710302f587ad77f56722a58751/deeptime-0.3.1.tar.gz (from https://pypi.org/simple/deeptime/) (requires-python:>= 3.6), version: 0.3.1 2025-10-15T10:42:26,239 Found link https://files.pythonhosted.org/packages/4f/18/0bf984551b16e5e57555112786e42f861b5651b44d704ae9623215754b4e/deeptime-0.4.0.tar.gz (from https://pypi.org/simple/deeptime/) (requires-python:>= 3.6), version: 0.4.0 2025-10-15T10:42:26,240 Found link https://files.pythonhosted.org/packages/a6/53/04b4d558ca7f281a2af2b843105e05aaa22f20418936b19740b835fcfcbc/deeptime-0.4.1.tar.gz (from https://pypi.org/simple/deeptime/) (requires-python:>= 3.7), version: 0.4.1 2025-10-15T10:42:26,241 Found link https://files.pythonhosted.org/packages/0a/d1/33d93dac1e717e71e4bb11ab4fedb503c84e6e23a50b0a9842c5677b2e3c/deeptime-0.4.2.tar.gz (from https://pypi.org/simple/deeptime/) (requires-python:>= 3.7), version: 0.4.2 2025-10-15T10:42:26,242 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/28/37/51ebb6141ebb2fc2b316aa53ce02de31c7d90594d7f8337bded6a4be198b/deeptime-0.4.3-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>= 3.7) 2025-10-15T10:42:26,242 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/67/63/067a9d8dee00d6adf624f30a03e6d9e2df9eeed99acfd0cbe4d39142799b/deeptime-0.4.3-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>= 3.7) 2025-10-15T10:42:26,243 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/5a/a7/400d57eaf7b150d430a7604cf283a50d4b5fe1a1d2c45bdbc0cae97dbd99/deeptime-0.4.3-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>= 3.7) 2025-10-15T10:42:26,244 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/e0/ac/6b8b28f9a9ffede671211a5c2d3de18b674f23e05cfe4b9dee53af477c8e/deeptime-0.4.3-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>= 3.7) 2025-10-15T10:42:26,244 Found link https://files.pythonhosted.org/packages/5e/51/a45b9dd65b2165b3bd2a83f71a8567c22ef43b667ff6c05cdd0561b590f7/deeptime-0.4.3.tar.gz (from https://pypi.org/simple/deeptime/) (requires-python:>= 3.7), version: 0.4.3 2025-10-15T10:42:26,245 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/60/6a/de21d4e22dd3181c3d93380575962c574eb80cf14affb92483a785cf8f54/deeptime-0.4.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,246 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/12/72/256ece6dc4f03330439dbd296983df84348edfca5a5f0f34ff9132effd5a/deeptime-0.4.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,247 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/ab/b5/00076a0f905327aff3c7f24d586cdbf0789530166774950eef056edc1a2e/deeptime-0.4.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,247 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/b5/1e/0d459eab07de6ec1daa13d6724519e55005db6c05e6025790a771629ab47/deeptime-0.4.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,248 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/6a/af/fc5a610617ed293fe537fbb8d00e757a4eddfa45831a292e9efba63e9802/deeptime-0.4.4-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,248 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/82/27/b5037fa44109ee1fe9348f761b65e3569e24f42cec47fe7b1ae890baea83/deeptime-0.4.4-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,249 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/9c/fa/de2c1d1e54d62a240d629753aa76fcded7af7114d57534b80594f85976fa/deeptime-0.4.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,250 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/5c/58/fcd732a54173ba2a7054a568b26bcd76fdb45eabc0349f1a773ebbf5b7ce/deeptime-0.4.4-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,250 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/c5/2c/427a820ae96c999e9d29a595956edf2c0f280f6a89ed2bf697f887964559/deeptime-0.4.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,251 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/8e/7e/c589337e1a9a4608403e6b497f829accd29e5bf7daa881a84b926f676cf6/deeptime-0.4.4-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,251 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/d3/de/abad5b2f690b9ebd83de2b4d8b5e03be5e177e8094e3bb9837e7ae326b7f/deeptime-0.4.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,252 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/c6/e0/60cb56b7a2368c3b43e1495f4e10604ffab166e22a23044e2c6f8ef353cb/deeptime-0.4.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,252 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/a0/29/84841f06f6fdc19bdd9f553de36a056e235b858eafce3be7c1cb0ea00146/deeptime-0.4.4-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,253 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/a5/65/5a0a42d02366e567e349fa86c3840a68a7f93270bb287e8f857e98f8a03d/deeptime-0.4.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,253 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/37/f2/996876757f5a68c225ef72d0b44518acbfe4145578d62767ac6abb2976cf/deeptime-0.4.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,254 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/01/01/cf693a441f59892682820f5b0f6dae135bea7e62ce9bfc2aeefb486244ff/deeptime-0.4.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,255 Found link https://files.pythonhosted.org/packages/73/39/997b4a05ab90ca63a282a7b958c282534bf7950306a69b03b899fe3540e1/deeptime-0.4.4.tar.gz (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8), version: 0.4.4 2025-10-15T10:42:26,256 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/f2/9f/2cfe8655b8d71dc005aef22b948eaec3dfddcace750e6f08234786c8e326/deeptime-0.4.5-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,256 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/66/0d/c814902d5abf243d6d8e7fb3f363c044734c896e7057545a49d22ff7154a/deeptime-0.4.5-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,257 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/d9/97/c029ec4a875973f46a007bfbd6c461a3bbdf6321c41525e5cff9b8a66ae5/deeptime-0.4.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,258 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/4f/4d/4ced244791babe75e07a8c529a63ffa00efd060a7a04956f5b85cd817bdc/deeptime-0.4.5-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,258 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/ec/99/7e94f9bec9a92771c033ab6cc217e28ac94c0106ec60c0e16749193c87cb/deeptime-0.4.5-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,259 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/e3/c1/e10f892f53f10d279a96a2f0d2b2dad3d4543eb420384bed11ad6fa293aa/deeptime-0.4.5-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,259 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/89/5c/ab91de6d72c6dd258185cc4931e708504c6420ecfcb8080d4cb886a3de79/deeptime-0.4.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,260 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/87/df/1e25d583049aa622e08c292e15926fca4a790c6334c79ddda55e01fde80a/deeptime-0.4.5-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,260 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/47/c4/ed58619aedb874978f848cb6a525b436c65f2144f9a5795572838f9aacb7/deeptime-0.4.5-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,261 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/1a/a3/873f0cac65bbab30e0dc5a875cd38993d4991b45ec2ce11a766f90b84179/deeptime-0.4.5-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,261 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/c2/68/4a2efb1dcefaeab852f61b18856f3fe090d79b9e98916e60ca76dd2294d5/deeptime-0.4.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,262 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/35/b2/bf2c48fff66c56c490fb5b8c5868c6f8da32a51fe69b876ec2081956b4ea/deeptime-0.4.5-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,263 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/d1/a2/e332b96d53d631abbbd968eadc1b710143ddea1d5e54ec252d225711683b/deeptime-0.4.5-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,263 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/ec/1c/2ec0c307472e20deb2dd31fb5e8b332f52340abf354d9c752303217fe59e/deeptime-0.4.5-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,264 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/df/c7/0bbae335bbcd08613a3aa7bc995f7bd787f3a9c0bb2e40dfd92f6fb6d946/deeptime-0.4.5-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,265 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/1f/e9/af97df1aa1ad967c2ca3ec9749c8b719d4d3c78948c3345bb3677b1a6f41/deeptime-0.4.5-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,265 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/a1/24/8a4fd8e29b6b7f86060de2e45d149516d59c86061fe70b58517bf7ba34c8/deeptime-0.4.5-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,266 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/14/5c/5e045d59b0b003dffeb2762d44acda9de08e163da3e76ad1e57db0d8f4a1/deeptime-0.4.5-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,267 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/2e/01/498ce6523713745922cf0416ddd8b3220310ca79af36a92bcb5e7b356788/deeptime-0.4.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,267 Skipping link: No binaries permitted for deeptime: https://files.pythonhosted.org/packages/6b/e6/1107b687a09bc10a412fb2faecb28a69798d8e432fd6d6e64f1b56c8749d/deeptime-0.4.5-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8) 2025-10-15T10:42:26,268 Found link https://files.pythonhosted.org/packages/c7/6c/b95ef5fcbb407e6ffa5157200deb2856dde0a0dad0c84280b66eb0634d5d/deeptime-0.4.5.tar.gz (from https://pypi.org/simple/deeptime/) (requires-python:>=3.8), version: 0.4.5 2025-10-15T10:42:26,269 Fetching project page and analyzing links: https://www.piwheels.org/simple/deeptime/ 2025-10-15T10:42:26,269 Getting page https://www.piwheels.org/simple/deeptime/ 2025-10-15T10:42:26,271 Found index url https://www.piwheels.org/simple 2025-10-15T10:42:26,424 Fetched page https://www.piwheels.org/simple/deeptime/ as text/html 2025-10-15T10:42:26,425 Skipping link: No binaries permitted for deeptime: https://archive1.piwheels.org/simple/deeptime/deeptime-0.0.0-py3-none-any.whl#sha256=55f0e1e06c707708507a8c224fbbd8f62ebe29f732a09afa0f278a57db4d240e (from https://www.piwheels.org/simple/deeptime/) 2025-10-15T10:42:26,426 Skipping link: not a file: https://www.piwheels.org/simple/deeptime/ 2025-10-15T10:42:26,427 Skipping link: not a file: https://pypi.org/simple/deeptime/ 2025-10-15T10:42:26,448 Given no hashes to check 1 links for project 'deeptime': discarding no candidates 2025-10-15T10:42:26,466 Collecting deeptime==0.4.5 2025-10-15T10:42:26,468 Created temporary directory: /tmp/pip-unpack-br6h7n3f 2025-10-15T10:42:26,599 Downloading deeptime-0.4.5.tar.gz (465 kB) 2025-10-15T10:42:27,170 Added deeptime==0.4.5 from https://files.pythonhosted.org/packages/c7/6c/b95ef5fcbb407e6ffa5157200deb2856dde0a0dad0c84280b66eb0634d5d/deeptime-0.4.5.tar.gz to build tracker '/tmp/pip-build-tracker-3hrtelu3' 2025-10-15T10:42:27,189 Created temporary directory: /tmp/pip-build-env-z8w1_anf 2025-10-15T10:42:27,194 Installing build dependencies: started 2025-10-15T10:42:27,195 Running command pip subprocess to install build dependencies 2025-10-15T10:42:28,362 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-10-15T10:42:28,951 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-15T10:42:28,974 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-15T10:42:28,976 Ignoring tomli: markers 'python_version < "3.11"' don't match your environment 2025-10-15T10:42:30,758 Collecting setuptools>=42 2025-10-15T10:42:30,936 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-10-15T10:42:31,222 Collecting wheel 2025-10-15T10:42:31,275 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2025-10-15T10:42:31,408 Collecting scikit-build>=0.16 2025-10-15T10:42:31,425 Using cached https://www.piwheels.org/simple/scikit-build/scikit_build-0.18.1-py3-none-any.whl (85 kB) 2025-10-15T10:42:33,173 Collecting cython>=0.29.30 2025-10-15T10:42:33,196 Using cached cython-3.1.4-py3-none-any.whl (1.2 MB) 2025-10-15T10:42:33,437 Collecting pybind11>=2.10.1 2025-10-15T10:42:33,470 Using cached https://www.piwheels.org/simple/pybind11/pybind11-3.0.1-py3-none-any.whl (293 kB) 2025-10-15T10:42:34,450 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-10-15T10:42:34,457 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-10-15T10:42:34,464 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-10-15T10:42:34,471 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-10-15T10:42:34,478 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-10-15T10:42:35,065 Collecting numpy 2025-10-15T10:42:35,677 Using cached https://www.piwheels.org/simple/numpy/numpy-2.3.3-cp311-cp311-linux_armv7l.whl (6.1 MB) 2025-10-15T10:42:36,947 Collecting cmake>=3.24 2025-10-15T10:42:37,308 Using cached cmake-4.1.0-py3-none-manylinux_2_31_armv7l.whl (26.5 MB) 2025-10-15T10:42:38,579 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/99/f1/c00d6be56e1a718a3068079e3ec8ce044d7179345280f6a3f5066068af0d/scipy-1.6.2.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.10) 2025-10-15T10:42:38,585 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/fe/fd/8704c7b7b34cdac850485e638346025ca57c5a859934b9aa1be5399b33b7/scipy-1.6.3.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.10) 2025-10-15T10:42:38,590 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/bb/bb/944f559d554df6c9adf037aa9fc982a9706ee0e96c0d5beac701cb158900/scipy-1.7.0.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.10) 2025-10-15T10:42:38,595 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/47/33/a24aec22b7be7fdb10ec117a95e1e4099890d8bbc6646902f443fc7719d1/scipy-1.7.1.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.10) 2025-10-15T10:42:38,601 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/0e/23/58c4f995475a2a97cb5f4a032aedaf881ad87cd976a7180c55118d105a1d/scipy-1.7.2.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.11) 2025-10-15T10:42:38,608 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/61/67/1a654b96309c991762ee9bc39c363fc618076b155fe52d295211cf2536c7/scipy-1.7.3.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.11) 2025-10-15T10:42:38,614 Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/c0/ad/e3c052ed4e0027a8abef0a5e8441a044427d252d17d9aee06d56e62fc698/scipy-1.8.0rc1.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2025-10-15T10:42:38,620 Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/29/d2/151a54944b333e465f98804dced31dab1284f3c37b752b9cefa710b64681/scipy-1.8.0rc2.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2025-10-15T10:42:38,626 Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/e4/26/83dd1c6378513a6241d984bda9f08c512b6e35fff13fba3acc1b3c195f02/scipy-1.8.0rc3.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2025-10-15T10:42:38,632 Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/22/78/056cc43e7737811b6f50886788a940f852773dd9804f5365952805db9648/scipy-1.8.0rc4.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2025-10-15T10:42:38,638 Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/b4/a2/4faa34bf0cdbefd5c706625f1234987795f368eb4e97bde9d6f46860843e/scipy-1.8.0.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2025-10-15T10:42:38,644 Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/26/b5/9330f004b9a3b2b6a31f59f46f1617ce9ca15c0e7fe64288c20385a05c9d/scipy-1.8.1.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11) 2025-10-15T10:42:39,211 Collecting scipy>=1.9.3 2025-10-15T10:42:40,778 Using cached https://www.piwheels.org/simple/scipy/scipy-1.16.2-cp311-cp311-linux_armv7l.whl (22.9 MB) 2025-10-15T10:42:41,629 Collecting ninja 2025-10-15T10:42:41,635 Using cached ninja-1.13.0-py3-none-manylinux_2_28_armv7l.manylinux_2_31_armv7l.whl (146 kB) 2025-10-15T10:42:41,811 Collecting versioneer[toml]==0.29 2025-10-15T10:42:41,829 Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.29-py3-none-any.whl (46 kB) 2025-10-15T10:42:42,080 Collecting distro 2025-10-15T10:42:42,095 Using cached https://www.piwheels.org/simple/distro/distro-1.9.0-py3-none-any.whl (20 kB) 2025-10-15T10:42:42,260 Collecting packaging 2025-10-15T10:42:42,277 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2025-10-15T10:42:46,062 Installing collected packages: wheel, versioneer, setuptools, pybind11, packaging, numpy, ninja, distro, cython, cmake, scipy, scikit-build 2025-10-15T10:42:46,311 Creating /tmp/pip-build-env-z8w1_anf/overlay/local/bin 2025-10-15T10:42:46,313 changing mode of /tmp/pip-build-env-z8w1_anf/overlay/local/bin/wheel to 755 2025-10-15T10:42:46,349 changing mode of /tmp/pip-build-env-z8w1_anf/overlay/local/bin/versioneer to 755 2025-10-15T10:42:50,174 changing mode of /tmp/pip-build-env-z8w1_anf/overlay/local/bin/pybind11-config to 755 2025-10-15T10:42:59,372 changing mode of /tmp/pip-build-env-z8w1_anf/overlay/local/bin/f2py to 755 2025-10-15T10:42:59,374 changing mode of /tmp/pip-build-env-z8w1_anf/overlay/local/bin/numpy-config to 755 2025-10-15T10:42:59,499 changing mode of /tmp/pip-build-env-z8w1_anf/overlay/local/bin/distro to 755 2025-10-15T10:43:02,464 changing mode of /tmp/pip-build-env-z8w1_anf/overlay/local/bin/cygdb to 755 2025-10-15T10:43:02,466 changing mode of /tmp/pip-build-env-z8w1_anf/overlay/local/bin/cython to 755 2025-10-15T10:43:02,468 changing mode of /tmp/pip-build-env-z8w1_anf/overlay/local/bin/cythonize to 755 2025-10-15T10:43:09,660 changing mode of /tmp/pip-build-env-z8w1_anf/overlay/local/bin/ccmake to 755 2025-10-15T10:43:09,663 changing mode of /tmp/pip-build-env-z8w1_anf/overlay/local/bin/cmake to 755 2025-10-15T10:43:09,665 changing mode of /tmp/pip-build-env-z8w1_anf/overlay/local/bin/cpack to 755 2025-10-15T10:43:09,667 changing mode of /tmp/pip-build-env-z8w1_anf/overlay/local/bin/ctest to 755 2025-10-15T10:43:27,870 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. 2025-10-15T10:43:27,870 conan 2.21.0 requires distro<=1.8.0,>=1.4.0; platform_system == "Linux" or platform_system == "FreeBSD", but you have distro 1.9.0 which is incompatible. 2025-10-15T10:43:27,871 Successfully installed cmake-4.1.0 cython-3.1.4 distro-1.9.0 ninja-1.13.0 numpy-2.3.3 packaging-25.0 pybind11-3.0.1 scikit-build-0.18.1 scipy-1.16.2 setuptools-80.9.0 versioneer-0.29 wheel-0.45.1 2025-10-15T10:43:28,472 Installing build dependencies: finished with status 'done' 2025-10-15T10:43:28,480 Getting requirements to build wheel: started 2025-10-15T10:43:28,481 Running command Getting requirements to build wheel 2025-10-15T10:43:29,729 running egg_info 2025-10-15T10:43:29,739 writing deeptime.egg-info/PKG-INFO 2025-10-15T10:43:29,754 writing dependency_links to deeptime.egg-info/dependency_links.txt 2025-10-15T10:43:29,762 writing requirements to deeptime.egg-info/requires.txt 2025-10-15T10:43:29,763 writing top-level names to deeptime.egg-info/top_level.txt 2025-10-15T10:43:29,840 reading manifest file 'deeptime.egg-info/SOURCES.txt' 2025-10-15T10:43:29,852 reading manifest template 'MANIFEST.in' 2025-10-15T10:43:30,195 warning: no files found matching '*.c' under directory 'deeptime' 2025-10-15T10:43:30,420 warning: no previously-included files matching '*' found under directory 'tests' 2025-10-15T10:43:30,421 no previously-included directories found matching 'tests' 2025-10-15T10:43:30,422 no previously-included directories found matching 'docs' 2025-10-15T10:43:30,423 no previously-included directories found matching '.github' 2025-10-15T10:43:30,424 no previously-included directories found matching '_skbuild' 2025-10-15T10:43:30,425 no previously-included directories found matching 'examples' 2025-10-15T10:43:30,426 no previously-included directories found matching 'cmake-build-*' 2025-10-15T10:43:30,426 adding license file 'LICENSE.txt' 2025-10-15T10:43:30,427 adding license file 'AUTHORS' 2025-10-15T10:43:30,438 writing manifest file 'deeptime.egg-info/SOURCES.txt' 2025-10-15T10:43:30,578 Getting requirements to build wheel: finished with status 'done' 2025-10-15T10:43:30,581 Created temporary directory: /tmp/pip-modern-metadata-358ac7xf 2025-10-15T10:43:30,584 Preparing metadata (pyproject.toml): started 2025-10-15T10:43:30,585 Running command Preparing metadata (pyproject.toml) 2025-10-15T10:43:31,686 running dist_info 2025-10-15T10:43:31,697 creating /tmp/pip-modern-metadata-358ac7xf/deeptime.egg-info 2025-10-15T10:43:31,698 writing /tmp/pip-modern-metadata-358ac7xf/deeptime.egg-info/PKG-INFO 2025-10-15T10:43:31,712 writing dependency_links to /tmp/pip-modern-metadata-358ac7xf/deeptime.egg-info/dependency_links.txt 2025-10-15T10:43:31,721 writing requirements to /tmp/pip-modern-metadata-358ac7xf/deeptime.egg-info/requires.txt 2025-10-15T10:43:31,722 writing top-level names to /tmp/pip-modern-metadata-358ac7xf/deeptime.egg-info/top_level.txt 2025-10-15T10:43:31,723 writing manifest file '/tmp/pip-modern-metadata-358ac7xf/deeptime.egg-info/SOURCES.txt' 2025-10-15T10:43:31,786 reading manifest file '/tmp/pip-modern-metadata-358ac7xf/deeptime.egg-info/SOURCES.txt' 2025-10-15T10:43:31,788 reading manifest template 'MANIFEST.in' 2025-10-15T10:43:32,125 warning: no files found matching '*.c' under directory 'deeptime' 2025-10-15T10:43:32,367 warning: no previously-included files matching '*' found under directory 'tests' 2025-10-15T10:43:32,368 no previously-included directories found matching 'tests' 2025-10-15T10:43:32,368 no previously-included directories found matching 'docs' 2025-10-15T10:43:32,369 no previously-included directories found matching '*.egg-info' 2025-10-15T10:43:32,370 no previously-included directories found matching '.github' 2025-10-15T10:43:32,371 no previously-included directories found matching '_skbuild' 2025-10-15T10:43:32,371 no previously-included directories found matching 'examples' 2025-10-15T10:43:32,372 no previously-included directories found matching 'cmake-build-*' 2025-10-15T10:43:32,373 adding license file 'LICENSE.txt' 2025-10-15T10:43:32,373 adding license file 'AUTHORS' 2025-10-15T10:43:32,382 writing manifest file '/tmp/pip-modern-metadata-358ac7xf/deeptime.egg-info/SOURCES.txt' 2025-10-15T10:43:32,389 creating '/tmp/pip-modern-metadata-358ac7xf/deeptime-0.4.5.dist-info' 2025-10-15T10:43:32,548 Preparing metadata (pyproject.toml): finished with status 'done' 2025-10-15T10:43:32,552 Source in /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada has version 0.4.5, which satisfies requirement deeptime==0.4.5 from https://files.pythonhosted.org/packages/c7/6c/b95ef5fcbb407e6ffa5157200deb2856dde0a0dad0c84280b66eb0634d5d/deeptime-0.4.5.tar.gz 2025-10-15T10:43:32,553 Removed deeptime==0.4.5 from https://files.pythonhosted.org/packages/c7/6c/b95ef5fcbb407e6ffa5157200deb2856dde0a0dad0c84280b66eb0634d5d/deeptime-0.4.5.tar.gz from build tracker '/tmp/pip-build-tracker-3hrtelu3' 2025-10-15T10:43:32,559 Created temporary directory: /tmp/pip-unpack-9bpajc_x 2025-10-15T10:43:32,560 Building wheels for collected packages: deeptime 2025-10-15T10:43:32,564 Created temporary directory: /tmp/pip-wheel-gwuievl2 2025-10-15T10:43:32,565 Destination directory: /tmp/pip-wheel-gwuievl2 2025-10-15T10:43:32,567 Building wheel for deeptime (pyproject.toml): started 2025-10-15T10:43:32,568 Running command Building wheel for deeptime (pyproject.toml) 2025-10-15T10:43:33,607 -------------------------------------------------------------------------------- 2025-10-15T10:43:33,608 -- Trying 'Ninja' generator 2025-10-15T10:43:33,608 -------------------------------- 2025-10-15T10:43:33,609 --------------------------- 2025-10-15T10:43:33,609 ---------------------- 2025-10-15T10:43:33,610 ----------------- 2025-10-15T10:43:33,610 ------------ 2025-10-15T10:43:33,611 ------- 2025-10-15T10:43:33,611 -- 2025-10-15T10:43:33,624 Not searching for unused variables given on the command line. 2025-10-15T10:43:33,625 CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): 2025-10-15T10:43:33,625 Compatibility with CMake < 3.10 will be removed from a future version of 2025-10-15T10:43:33,626 CMake. 2025-10-15T10:43:33,627 Update the VERSION argument value. Or, use the ... syntax 2025-10-15T10:43:33,627 to tell CMake that the project requires at least but has been updated 2025-10-15T10:43:33,628 to work with policies introduced by or earlier. 2025-10-15T10:43:33,901 -- The C compiler identification is GNU 12.2.0 2025-10-15T10:43:34,002 -- Detecting C compiler ABI info 2025-10-15T10:43:34,251 -- Detecting C compiler ABI info - done 2025-10-15T10:43:34,313 -- Check for working C compiler: /usr/bin/cc - skipped 2025-10-15T10:43:34,315 -- Detecting C compile features 2025-10-15T10:43:34,318 -- Detecting C compile features - done 2025-10-15T10:43:34,699 -- The CXX compiler identification is GNU 12.2.0 2025-10-15T10:43:34,757 -- Detecting CXX compiler ABI info 2025-10-15T10:43:35,077 -- Detecting CXX compiler ABI info - done 2025-10-15T10:43:35,142 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2025-10-15T10:43:35,144 -- Detecting CXX compile features 2025-10-15T10:43:35,149 -- Detecting CXX compile features - done 2025-10-15T10:43:35,185 -- Configuring done (1.6s) 2025-10-15T10:43:35,216 -- Generating done (0.0s) 2025-10-15T10:43:35,221 -- Build files have been written to: /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/_cmake_test_compile/build 2025-10-15T10:43:35,231 -- 2025-10-15T10:43:35,231 ------- 2025-10-15T10:43:35,232 ------------ 2025-10-15T10:43:35,233 ----------------- 2025-10-15T10:43:35,233 ---------------------- 2025-10-15T10:43:35,234 --------------------------- 2025-10-15T10:43:35,234 -------------------------------- 2025-10-15T10:43:35,235 -- Trying 'Ninja' generator - success 2025-10-15T10:43:35,235 -------------------------------------------------------------------------------- 2025-10-15T10:43:35,489 Configuring Project 2025-10-15T10:43:35,489 Working directory: 2025-10-15T10:43:35,490 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/_skbuild/linux-armv7l-3.11/cmake-build 2025-10-15T10:43:35,490 Command: 2025-10-15T10:43:35,491 /tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/cmake/data/bin/cmake /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada -G Ninja -DCMAKE_MAKE_PROGRAM:FILEPATH=/usr/bin/ninja --no-warn-unused-cli -DCMAKE_INSTALL_PREFIX:PATH=/tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/_skbuild/linux-armv7l-3.11/cmake-install/deeptime -DPYTHON_VERSION_STRING:STRING=3.11.2 -DSKBUILD:INTERNAL=TRUE -DCMAKE_MODULE_PATH:PATH=/tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/skbuild/resources/cmake -DPYTHON_EXECUTABLE:PATH=/usr/bin/python3 -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.11 -DPYTHON_LIBRARY:PATH=/usr/lib/arm-linux-gnueabihf/libpython3.11.so -DPython_EXECUTABLE:PATH=/usr/bin/python3 -DPython_ROOT_DIR:PATH=/usr -DPython_FIND_REGISTRY:STRING=NEVER -DPython_INCLUDE_DIR:PATH=/usr/include/python3.11 -DPython_NumPy_INCLUDE_DIRS:PATH=/tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -DPython3_EXECUTABLE:PATH=/usr/bin/python3 -DPython3_ROOT_DIR:PATH=/usr -DPython3_FIND_REGISTRY:STRING=NEVER -DPython3_INCLUDE_DIR:PATH=/usr/include/python3.11 -DPython3_NumPy_INCLUDE_DIRS:PATH=/tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -DCMAKE_MAKE_PROGRAM:FILEPATH=/usr/bin/ninja -DDEEPTIME_VERSION=0.4.5 -DDEEPTIME_VERSION_INFO=0.4.5 -DCMAKE_BUILD_TYPE:STRING=Release 2025-10-15T10:43:35,758 Not searching for unused variables given on the command line. 2025-10-15T10:43:35,759 -- The C compiler identification is GNU 12.2.0 2025-10-15T10:43:36,107 -- The CXX compiler identification is GNU 12.2.0 2025-10-15T10:43:36,146 -- Detecting C compiler ABI info 2025-10-15T10:43:36,426 -- Detecting C compiler ABI info - done 2025-10-15T10:43:36,488 -- Check for working C compiler: /usr/bin/cc - skipped 2025-10-15T10:43:36,490 -- Detecting C compile features 2025-10-15T10:43:36,492 -- Detecting C compile features - done 2025-10-15T10:43:36,554 -- Detecting CXX compiler ABI info 2025-10-15T10:43:37,090 -- Detecting CXX compiler ABI info - done 2025-10-15T10:43:37,189 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2025-10-15T10:43:37,191 -- Detecting CXX compile features 2025-10-15T10:43:37,197 -- Detecting CXX compile features - done 2025-10-15T10:43:37,245 -- Got deeptime version 0.4.5 2025-10-15T10:43:37,246 -- Got deeptime full version 0.4.5 2025-10-15T10:43:37,246 -- Building tests: OFF 2025-10-15T10:43:38,324 '/usr/bin/python3' '-c' 'import pybind11; print(pybind11.get_cmake_dir())' 2025-10-15T10:43:38,325 -- Found OpenMP_C: -fopenmp (found suitable version "4.5", minimum required is "4") 2025-10-15T10:43:38,678 -- Found OpenMP_CXX: -fopenmp (found suitable version "4.5", minimum required is "4") 2025-10-15T10:43:38,681 -- Found OpenMP: TRUE (found suitable version "4.5", minimum required is "4") 2025-10-15T10:43:40,122 -- Found Python: /usr/include/python3.11 (found version "3.11.2") found components: Development NumPy Interpreter Development.Module Development.Embed 2025-10-15T10:43:40,287 -- Performing Test HAS_FLTO_AUTO 2025-10-15T10:43:41,323 -- Performing Test HAS_FLTO_AUTO - Success 2025-10-15T10:43:41,325 -- Found pybind11: /tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/pybind11/include (found version "3.0.1") 2025-10-15T10:43:41,705 -- Found Cython: /tmp/pip-build-env-z8w1_anf/overlay/local/bin/cython 2025-10-15T10:43:41,710 CMake Warning (dev) at /tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/skbuild/resources/cmake/FindPythonExtensions.cmake:245 (find_package): 2025-10-15T10:43:41,711 Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules 2025-10-15T10:43:41,711 are removed. Run "cmake --help-policy CMP0148" for policy details. Use 2025-10-15T10:43:41,712 the cmake_policy command to set the policy and suppress this warning. 2025-10-15T10:43:41,713 Call Stack (most recent call first): 2025-10-15T10:43:41,713 deeptime/numeric/CMakeLists.txt:8 (find_package) 2025-10-15T10:43:41,713 This warning is for project developers. Use -Wno-dev to suppress it. 2025-10-15T10:43:41,785 -- Found PythonInterp: /usr/bin/python3 (found version "3.11.2") 2025-10-15T10:43:41,786 CMake Warning (dev) at /tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/skbuild/resources/cmake/FindPythonExtensions.cmake:252 (find_package): 2025-10-15T10:43:41,787 Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules 2025-10-15T10:43:41,787 are removed. Run "cmake --help-policy CMP0148" for policy details. Use 2025-10-15T10:43:41,788 the cmake_policy command to set the policy and suppress this warning. 2025-10-15T10:43:41,789 Call Stack (most recent call first): 2025-10-15T10:43:41,789 deeptime/numeric/CMakeLists.txt:8 (find_package) 2025-10-15T10:43:41,789 This warning is for project developers. Use -Wno-dev to suppress it. 2025-10-15T10:43:41,797 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.11.so (found version "3.11.2") 2025-10-15T10:43:42,265 -- Performing Test Weak Link MODULE -> SHARED (gnu_ld_ignore) - Success 2025-10-15T10:43:42,267 _modinit_prefix:PyInit_ 2025-10-15T10:43:42,366 -- Configuring done (6.9s) 2025-10-15T10:43:42,557 -- Generating done (0.2s) 2025-10-15T10:43:42,563 -- Build files have been written to: /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/_skbuild/linux-armv7l-3.11/cmake-build 2025-10-15T10:44:04,659 [1/26] Generating C source deeptime/numeric/eig_qr.c 2025-10-15T10:44:13,423 [2/26] Building CXX object deeptime/numeric/CMakeFiles/_numeric_bindings.dir/src/numeric_module.cpp.o 2025-10-15T10:44:22,710 [3/26] Building CXX object deeptime/covariance/util/covar_c/CMakeFiles/_covartools.dir/covartools.cpp.o 2025-10-15T10:44:28,304 [4/26] Building CXX object deeptime/basis/CMakeFiles/_basis_bindings.dir/src/basis_bindings.cpp.o 2025-10-15T10:44:30,254 [5/26] Building CXX object deeptime/clustering/CMakeFiles/_clustering_bindings.dir/src/clustering_module.cpp.o 2025-10-15T10:44:35,073 [6/26] Linking CXX shared module deeptime/numeric/_numeric_bindings.cpython-311-arm-linux-gnueabihf.so 2025-10-15T10:44:48,578 [7/26] Linking CXX shared module deeptime/covariance/util/covar_c/_covartools.cpython-311-arm-linux-gnueabihf.so 2025-10-15T10:44:53,101 [8/26] Linking CXX shared module deeptime/basis/_basis_bindings.cpython-311-arm-linux-gnueabihf.so 2025-10-15T10:44:54,604 [9/26] Linking CXX shared module deeptime/clustering/_clustering_bindings.cpython-311-arm-linux-gnueabihf.so 2025-10-15T10:44:56,206 [10/26] Building C object deeptime/numeric/CMakeFiles/eig_qr.dir/eig_qr.c.o 2025-10-15T10:44:56,606 [11/26] Linking C shared module deeptime/numeric/eig_qr.cpython-311-arm-linux-gnueabihf.so 2025-10-15T10:45:21,524 [12/26] Building CXX object deeptime/markov/hmm/CMakeFiles/_hmm_bindings.dir/src/hmm_module.cpp.o 2025-10-15T10:45:21,525 FAILED: deeptime/markov/hmm/CMakeFiles/_hmm_bindings.dir/src/hmm_module.cpp.o 2025-10-15T10:45:21,526 /usr/bin/c++ -DUSE_OPENMP -D_hmm_bindings_EXPORTS -I/tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include -isystem /usr/include/python3.11 -isystem /tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/pybind11/include -O3 -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -flto=auto -fno-fat-lto-objects -fopenmp -MD -MT deeptime/markov/hmm/CMakeFiles/_hmm_bindings.dir/src/hmm_module.cpp.o -MF deeptime/markov/hmm/CMakeFiles/_hmm_bindings.dir/src/hmm_module.cpp.o.d -o deeptime/markov/hmm/CMakeFiles/_hmm_bindings.dir/src/hmm_module.cpp.o -c /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/markov/hmm/src/hmm_module.cpp 2025-10-15T10:45:21,527 In file included from /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/markov/hmm/src/hmm_module.cpp:7: 2025-10-15T10:45:21,528 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h: In instantiation of ‘deeptime::np_array deeptime::markov::hmm::output_models::discrete::generateObservationTrajectory(deeptime::np_array_nfc&, deeptime::np_array_nfc&) [with dtype = float; State = short int; deeptime::np_array = pybind11::array_t; deeptime::np_array_nfc = pybind11::array_t; deeptime::np_array_nfc = pybind11::array_t]’: 2025-10-15T10:45:21,529 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/markov/hmm/src/hmm_module.cpp:20:27: required from here 2025-10-15T10:45:21,529 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: error: no matching function for call to ‘max(pybind11::ssize_t, unsigned int)’ 2025-10-15T10:45:21,530 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,531 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,532 In file included from /usr/include/c++/12/bits/specfun.h:45, 2025-10-15T10:45:21,533 from /usr/include/c++/12/cmath:1935, 2025-10-15T10:45:21,534 from /usr/include/c++/12/math.h:36, 2025-10-15T10:45:21,535 from /usr/include/python3.11/pyport.h:218, 2025-10-15T10:45:21,536 from /usr/include/python3.11/Python.h:38, 2025-10-15T10:45:21,537 from /tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/pybind11/include/pybind11/conduit/wrap_include_python_h.h:44, 2025-10-15T10:45:21,538 from /tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/pybind11/include/pybind11/detail/common.h:12, 2025-10-15T10:45:21,539 from /tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/pybind11/include/pybind11/attr.h:13, 2025-10-15T10:45:21,540 from /tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/pybind11/include/pybind11/detail/class.h:12, 2025-10-15T10:45:21,541 from /tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/pybind11/include/pybind11/pybind11.h:12, 2025-10-15T10:45:21,542 from /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/common.h:3, 2025-10-15T10:45:21,543 from /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/markov/hmm/src/hmm_module.cpp:5: 2025-10-15T10:45:21,544 /usr/include/c++/12/bits/stl_algobase.h:254:5: note: candidate: ‘template constexpr const _Tp& std::max(const _Tp&, const _Tp&)’ 2025-10-15T10:45:21,545 254 | max(const _Tp& __a, const _Tp& __b) 2025-10-15T10:45:21,546 | ^~~ 2025-10-15T10:45:21,547 /usr/include/c++/12/bits/stl_algobase.h:254:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,548 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: deduced conflicting types for parameter ‘const _Tp’ (‘int’ and ‘unsigned int’) 2025-10-15T10:45:21,549 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,550 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,551 /usr/include/c++/12/bits/stl_algobase.h:300:5: note: candidate: ‘template constexpr const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’ 2025-10-15T10:45:21,552 300 | max(const _Tp& __a, const _Tp& __b, _Compare __comp) 2025-10-15T10:45:21,553 | ^~~ 2025-10-15T10:45:21,554 /usr/include/c++/12/bits/stl_algobase.h:300:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,554 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: deduced conflicting types for parameter ‘const _Tp’ (‘int’ and ‘unsigned int’) 2025-10-15T10:45:21,555 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,556 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,557 In file included from /usr/include/c++/12/functional:64, 2025-10-15T10:45:21,558 from /tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/pybind11/include/pybind11/detail/struct_smart_holder.h:54, 2025-10-15T10:45:21,559 from /tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/pybind11/include/pybind11/detail/using_smart_holder.h:8, 2025-10-15T10:45:21,560 from /tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/pybind11/include/pybind11/trampoline_self_life_support.h:8, 2025-10-15T10:45:21,561 from /tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/pybind11/include/pybind11/detail/internals.h:15, 2025-10-15T10:45:21,562 from /tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/pybind11/include/pybind11/detail/native_enum_data.h:9, 2025-10-15T10:45:21,562 from /tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/pybind11/include/pybind11/cast.h:15, 2025-10-15T10:45:21,564 from /tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/pybind11/include/pybind11/attr.h:14: 2025-10-15T10:45:21,564 /usr/include/c++/12/bits/stl_algo.h:5746:5: note: candidate: ‘template constexpr _Tp std::max(initializer_list<_Tp>)’ 2025-10-15T10:45:21,565 5746 | max(initializer_list<_Tp> __l) 2025-10-15T10:45:21,566 | ^~~ 2025-10-15T10:45:21,567 /usr/include/c++/12/bits/stl_algo.h:5746:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,568 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘int’ 2025-10-15T10:45:21,569 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,570 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,571 /usr/include/c++/12/bits/stl_algo.h:5756:5: note: candidate: ‘template constexpr _Tp std::max(initializer_list<_Tp>, _Compare)’ 2025-10-15T10:45:21,572 5756 | max(initializer_list<_Tp> __l, _Compare __comp) 2025-10-15T10:45:21,583 | ^~~ 2025-10-15T10:45:21,584 /usr/include/c++/12/bits/stl_algo.h:5756:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,585 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘int’ 2025-10-15T10:45:21,586 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,587 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,588 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h: In instantiation of ‘deeptime::np_array deeptime::markov::hmm::output_models::discrete::generateObservationTrajectory(deeptime::np_array_nfc&, deeptime::np_array_nfc&) [with dtype = float; State = int; deeptime::np_array = pybind11::array_t; deeptime::np_array_nfc = pybind11::array_t; deeptime::np_array_nfc = pybind11::array_t]’: 2025-10-15T10:45:21,589 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/markov/hmm/src/hmm_module.cpp:22:27: required from here 2025-10-15T10:45:21,590 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: error: no matching function for call to ‘max(pybind11::ssize_t, unsigned int)’ 2025-10-15T10:45:21,591 /usr/include/c++/12/bits/stl_algobase.h:254:5: note: candidate: ‘template constexpr const _Tp& std::max(const _Tp&, const _Tp&)’ 2025-10-15T10:45:21,592 254 | max(const _Tp& __a, const _Tp& __b) 2025-10-15T10:45:21,593 | ^~~ 2025-10-15T10:45:21,594 /usr/include/c++/12/bits/stl_algobase.h:254:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,594 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: deduced conflicting types for parameter ‘const _Tp’ (‘int’ and ‘unsigned int’) 2025-10-15T10:45:21,595 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,596 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,597 /usr/include/c++/12/bits/stl_algobase.h:300:5: note: candidate: ‘template constexpr const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’ 2025-10-15T10:45:21,599 300 | max(const _Tp& __a, const _Tp& __b, _Compare __comp) 2025-10-15T10:45:21,600 | ^~~ 2025-10-15T10:45:21,601 /usr/include/c++/12/bits/stl_algobase.h:300:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,602 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: deduced conflicting types for parameter ‘const _Tp’ (‘int’ and ‘unsigned int’) 2025-10-15T10:45:21,603 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,604 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,605 /usr/include/c++/12/bits/stl_algo.h:5746:5: note: candidate: ‘template constexpr _Tp std::max(initializer_list<_Tp>)’ 2025-10-15T10:45:21,606 5746 | max(initializer_list<_Tp> __l) 2025-10-15T10:45:21,607 | ^~~ 2025-10-15T10:45:21,608 /usr/include/c++/12/bits/stl_algo.h:5746:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,609 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘int’ 2025-10-15T10:45:21,609 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,610 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,611 /usr/include/c++/12/bits/stl_algo.h:5756:5: note: candidate: ‘template constexpr _Tp std::max(initializer_list<_Tp>, _Compare)’ 2025-10-15T10:45:21,612 5756 | max(initializer_list<_Tp> __l, _Compare __comp) 2025-10-15T10:45:21,614 | ^~~ 2025-10-15T10:45:21,615 /usr/include/c++/12/bits/stl_algo.h:5756:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,616 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘int’ 2025-10-15T10:45:21,617 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,617 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,618 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h: In instantiation of ‘deeptime::np_array deeptime::markov::hmm::output_models::discrete::generateObservationTrajectory(deeptime::np_array_nfc&, deeptime::np_array_nfc&) [with dtype = float; State = long long int; deeptime::np_array = pybind11::array_t; deeptime::np_array_nfc = pybind11::array_t; deeptime::np_array_nfc = pybind11::array_t]’: 2025-10-15T10:45:21,619 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/markov/hmm/src/hmm_module.cpp:24:27: required from here 2025-10-15T10:45:21,620 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: error: no matching function for call to ‘max(pybind11::ssize_t, unsigned int)’ 2025-10-15T10:45:21,621 /usr/include/c++/12/bits/stl_algobase.h:254:5: note: candidate: ‘template constexpr const _Tp& std::max(const _Tp&, const _Tp&)’ 2025-10-15T10:45:21,622 254 | max(const _Tp& __a, const _Tp& __b) 2025-10-15T10:45:21,623 | ^~~ 2025-10-15T10:45:21,624 /usr/include/c++/12/bits/stl_algobase.h:254:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,625 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: deduced conflicting types for parameter ‘const _Tp’ (‘int’ and ‘unsigned int’) 2025-10-15T10:45:21,625 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,626 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,627 /usr/include/c++/12/bits/stl_algobase.h:300:5: note: candidate: ‘template constexpr const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’ 2025-10-15T10:45:21,628 300 | max(const _Tp& __a, const _Tp& __b, _Compare __comp) 2025-10-15T10:45:21,629 | ^~~ 2025-10-15T10:45:21,630 /usr/include/c++/12/bits/stl_algobase.h:300:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,631 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: deduced conflicting types for parameter ‘const _Tp’ (‘int’ and ‘unsigned int’) 2025-10-15T10:45:21,632 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,633 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,634 /usr/include/c++/12/bits/stl_algo.h:5746:5: note: candidate: ‘template constexpr _Tp std::max(initializer_list<_Tp>)’ 2025-10-15T10:45:21,635 5746 | max(initializer_list<_Tp> __l) 2025-10-15T10:45:21,636 | ^~~ 2025-10-15T10:45:21,637 /usr/include/c++/12/bits/stl_algo.h:5746:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,638 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘int’ 2025-10-15T10:45:21,639 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,640 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,641 /usr/include/c++/12/bits/stl_algo.h:5756:5: note: candidate: ‘template constexpr _Tp std::max(initializer_list<_Tp>, _Compare)’ 2025-10-15T10:45:21,642 5756 | max(initializer_list<_Tp> __l, _Compare __comp) 2025-10-15T10:45:21,642 | ^~~ 2025-10-15T10:45:21,643 /usr/include/c++/12/bits/stl_algo.h:5756:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,644 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘int’ 2025-10-15T10:45:21,645 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,646 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,647 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h: In instantiation of ‘deeptime::np_array deeptime::markov::hmm::output_models::discrete::generateObservationTrajectory(deeptime::np_array_nfc&, deeptime::np_array_nfc&) [with dtype = double; State = int; deeptime::np_array = pybind11::array_t; deeptime::np_array_nfc = pybind11::array_t; deeptime::np_array_nfc = pybind11::array_t]’: 2025-10-15T10:45:21,647 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/markov/hmm/src/hmm_module.cpp:26:27: required from here 2025-10-15T10:45:21,648 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: error: no matching function for call to ‘max(pybind11::ssize_t, unsigned int)’ 2025-10-15T10:45:21,649 /usr/include/c++/12/bits/stl_algobase.h:254:5: note: candidate: ‘template constexpr const _Tp& std::max(const _Tp&, const _Tp&)’ 2025-10-15T10:45:21,650 254 | max(const _Tp& __a, const _Tp& __b) 2025-10-15T10:45:21,651 | ^~~ 2025-10-15T10:45:21,652 /usr/include/c++/12/bits/stl_algobase.h:254:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,653 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: deduced conflicting types for parameter ‘const _Tp’ (‘int’ and ‘unsigned int’) 2025-10-15T10:45:21,654 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,663 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,664 /usr/include/c++/12/bits/stl_algobase.h:300:5: note: candidate: ‘template constexpr const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’ 2025-10-15T10:45:21,665 300 | max(const _Tp& __a, const _Tp& __b, _Compare __comp) 2025-10-15T10:45:21,666 | ^~~ 2025-10-15T10:45:21,667 /usr/include/c++/12/bits/stl_algobase.h:300:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,668 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: deduced conflicting types for parameter ‘const _Tp’ (‘int’ and ‘unsigned int’) 2025-10-15T10:45:21,669 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,670 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,671 /usr/include/c++/12/bits/stl_algo.h:5746:5: note: candidate: ‘template constexpr _Tp std::max(initializer_list<_Tp>)’ 2025-10-15T10:45:21,671 5746 | max(initializer_list<_Tp> __l) 2025-10-15T10:45:21,672 | ^~~ 2025-10-15T10:45:21,673 /usr/include/c++/12/bits/stl_algo.h:5746:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,674 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘int’ 2025-10-15T10:45:21,675 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,676 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,677 /usr/include/c++/12/bits/stl_algo.h:5756:5: note: candidate: ‘template constexpr _Tp std::max(initializer_list<_Tp>, _Compare)’ 2025-10-15T10:45:21,677 5756 | max(initializer_list<_Tp> __l, _Compare __comp) 2025-10-15T10:45:21,678 | ^~~ 2025-10-15T10:45:21,679 /usr/include/c++/12/bits/stl_algo.h:5756:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,680 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘int’ 2025-10-15T10:45:21,681 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,682 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,683 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h: In instantiation of ‘deeptime::np_array deeptime::markov::hmm::output_models::discrete::generateObservationTrajectory(deeptime::np_array_nfc&, deeptime::np_array_nfc&) [with dtype = double; State = long long int; deeptime::np_array = pybind11::array_t; deeptime::np_array_nfc = pybind11::array_t; deeptime::np_array_nfc = pybind11::array_t]’: 2025-10-15T10:45:21,684 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/markov/hmm/src/hmm_module.cpp:28:27: required from here 2025-10-15T10:45:21,685 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: error: no matching function for call to ‘max(pybind11::ssize_t, unsigned int)’ 2025-10-15T10:45:21,686 /usr/include/c++/12/bits/stl_algobase.h:254:5: note: candidate: ‘template constexpr const _Tp& std::max(const _Tp&, const _Tp&)’ 2025-10-15T10:45:21,686 254 | max(const _Tp& __a, const _Tp& __b) 2025-10-15T10:45:21,688 | ^~~ 2025-10-15T10:45:21,688 /usr/include/c++/12/bits/stl_algobase.h:254:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,689 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: deduced conflicting types for parameter ‘const _Tp’ (‘int’ and ‘unsigned int’) 2025-10-15T10:45:21,690 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,691 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,692 /usr/include/c++/12/bits/stl_algobase.h:300:5: note: candidate: ‘template constexpr const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’ 2025-10-15T10:45:21,693 300 | max(const _Tp& __a, const _Tp& __b, _Compare __comp) 2025-10-15T10:45:21,694 | ^~~ 2025-10-15T10:45:21,695 /usr/include/c++/12/bits/stl_algobase.h:300:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,696 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: deduced conflicting types for parameter ‘const _Tp’ (‘int’ and ‘unsigned int’) 2025-10-15T10:45:21,697 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,698 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,699 /usr/include/c++/12/bits/stl_algo.h:5746:5: note: candidate: ‘template constexpr _Tp std::max(initializer_list<_Tp>)’ 2025-10-15T10:45:21,700 5746 | max(initializer_list<_Tp> __l) 2025-10-15T10:45:21,700 | ^~~ 2025-10-15T10:45:21,701 /usr/include/c++/12/bits/stl_algo.h:5746:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,702 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘int’ 2025-10-15T10:45:21,703 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,704 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:21,705 /usr/include/c++/12/bits/stl_algo.h:5756:5: note: candidate: ‘template constexpr _Tp std::max(initializer_list<_Tp>, _Compare)’ 2025-10-15T10:45:21,706 5756 | max(initializer_list<_Tp> __l, _Compare __comp) 2025-10-15T10:45:21,707 | ^~~ 2025-10-15T10:45:21,707 /usr/include/c++/12/bits/stl_algo.h:5756:5: note: template argument deduction/substitution failed: 2025-10-15T10:45:21,708 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/deeptime/src/include/deeptime/markov/hmm/OutputModelUtils.h:56:34: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘int’ 2025-10-15T10:45:21,709 56 | auto grainSize = std::max(static_cast(1), nTimesteps / nThreads); 2025-10-15T10:45:21,723 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-15T10:45:23,905 [13/26] Building CXX object deeptime/markov/CMakeFiles/_markov_bindings.dir/src/markov_module.cpp.o 2025-10-15T10:45:28,447 [14/26] Building CXX object deeptime/markov/tools/estimation/sparse/CMakeFiles/_mle_sparse_bindings.dir/src/mle_sparse_module.cpp.o 2025-10-15T10:45:34,961 [15/26] Building CXX object deeptime/markov/msm/tram/CMakeFiles/_tram_bindings.dir/_bindings/src/tram_module.cpp.o 2025-10-15T10:45:39,443 [16/26] Building CXX object deeptime/markov/tools/estimation/dense/CMakeFiles/_mle_bindings.dir/src/mle_module.cpp.o 2025-10-15T10:45:46,237 [17/26] Building CXX object deeptime/data/CMakeFiles/_data_bindings.dir/src/data_module.cpp.o 2025-10-15T10:45:46,237 ninja: build stopped: subcommand failed. 2025-10-15T10:45:46,241 Traceback (most recent call last): 2025-10-15T10:45:46,245 File "/tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/skbuild/setuptools_wrap.py", line 668, in setup 2025-10-15T10:45:46,246 cmkr.make(make_args, install_target=cmake_install_target, env=env) 2025-10-15T10:45:46,246 File "/tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/skbuild/cmaker.py", line 696, in make 2025-10-15T10:45:46,247 self.make_impl(clargs=clargs, config=config, source_dir=source_dir, install_target=install_target, env=env) 2025-10-15T10:45:46,247 File "/tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/skbuild/cmaker.py", line 741, in make_impl 2025-10-15T10:45:46,248 raise SKBuildError(msg) 2025-10-15T10:45:46,250 An error occurred while building with CMake. 2025-10-15T10:45:46,251 Command: 2025-10-15T10:45:46,252 /tmp/pip-build-env-z8w1_anf/overlay/local/lib/python3.11/dist-packages/cmake/data/bin/cmake --build . --target install --config Release -- 2025-10-15T10:45:46,253 Install target: 2025-10-15T10:45:46,254 install 2025-10-15T10:45:46,255 Source directory: 2025-10-15T10:45:46,255 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada 2025-10-15T10:45:46,256 Working directory: 2025-10-15T10:45:46,257 /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada/_skbuild/linux-armv7l-3.11/cmake-build 2025-10-15T10:45:46,257 Please check the install target is valid and see CMake's output for more information. 2025-10-15T10:45:46,407 ERROR: [present-rich] Building wheel for deeptime (pyproject.toml) exited with 1 2025-10-15T10:45:46,420 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpz72giv0n[/] 2025-10-15T10:45:46,421 [bold magenta]cwd[/]: /tmp/pip-wheel-ufih5zrs/deeptime_65e3879b33d4486681b7d8d0f517aada 2025-10-15T10:45:46,421 Building wheel for deeptime (pyproject.toml): finished with status 'error' 2025-10-15T10:45:46,423 ERROR: Failed building wheel for deeptime 2025-10-15T10:45:46,425 Failed to build deeptime 2025-10-15T10:45:46,427 ERROR: Failed to build one or more wheels 2025-10-15T10:45:46,428 Exception information: 2025-10-15T10:45:46,428 Traceback (most recent call last): 2025-10-15T10:45:46,428 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2025-10-15T10:45:46,428 status = run_func(*args) 2025-10-15T10:45:46,428 ^^^^^^^^^^^^^^^ 2025-10-15T10:45:46,428 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2025-10-15T10:45:46,428 return func(self, options, args) 2025-10-15T10:45:46,428 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-10-15T10:45:46,428 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2025-10-15T10:45:46,428 raise CommandError("Failed to build one or more wheels") 2025-10-15T10:45:46,428 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-10-15T10:45:46,432 Removed build tracker: '/tmp/pip-build-tracker-3hrtelu3'