2025-10-15T14:23:35,814 Created temporary directory: /tmp/pip-ephem-wheel-cache-uxm6wsim 2025-10-15T14:23:35,816 Created temporary directory: /tmp/pip-build-tracker-5dyyi6cl 2025-10-15T14:23:35,816 Initialized build tracking at /tmp/pip-build-tracker-5dyyi6cl 2025-10-15T14:23:35,817 Created build tracker: /tmp/pip-build-tracker-5dyyi6cl 2025-10-15T14:23:35,817 Entered build tracker: /tmp/pip-build-tracker-5dyyi6cl 2025-10-15T14:23:35,818 Created temporary directory: /tmp/pip-wheel-lb3zz5yy 2025-10-15T14:23:35,821 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-15T14:23:35,823 Created temporary directory: /tmp/pip-ephem-wheel-cache-pnwyecle 2025-10-15T14:23:35,851 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-15T14:23:35,854 2 location(s) to search for versions of fibsem: 2025-10-15T14:23:35,854 * https://pypi.org/simple/fibsem/ 2025-10-15T14:23:35,854 * https://www.piwheels.org/simple/fibsem/ 2025-10-15T14:23:35,855 Fetching project page and analyzing links: https://pypi.org/simple/fibsem/ 2025-10-15T14:23:35,856 Getting page https://pypi.org/simple/fibsem/ 2025-10-15T14:23:35,857 Found index url https://pypi.org/simple 2025-10-15T14:23:36,071 Fetched page https://pypi.org/simple/fibsem/ as application/vnd.pypi.simple.v1+json 2025-10-15T14:23:36,081 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/4c/cf/0ed2a796e278cf9de3d52e287cc7d8d9892c21c0a00920a9ff30f5033a56/fibsem-0.2.1a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,081 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/ad/73/b8cf8db0dba6e191be400b025e534b4f6d7d18c39d86428101720ee58e4e/fibsem-0.2.1a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,082 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/d7/30/b93e42954d23659272a1b8ac6f3dd60da6eff0df55fc4d31bb515f6934eb/fibsem-0.2.2a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,083 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/c8/8f/4bfbe20bfa2ca615b74ad68a1317c1b61df9a93f5f8c9df9e223c9b20623/fibsem-0.2.2a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,084 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/7c/63/681df259de02d04424d8e71530649f0949504d5b31aaf5086651b5804d0c/fibsem-0.2.3a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,084 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/36/98/67400e49fe61d7e9e58d04099a516c039d4493a9ce346276a2cb37774dcd/fibsem-0.2.3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,085 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/39/cc/5b8579067af3dc74509ceaba38d5117cde72f44a85ca8bcc56f5ebee7260/fibsem-0.2.4-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,086 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/43/13/625dba2d4741c02a3e6c970399a725b644b9a058dadb2f5fea9e9420b4e3/fibsem-0.2.5-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,087 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/87/1d/1562b356490f6c485f927c52d4b36e774bd5b9588d7a8da4a3dc9432db01/fibsem-0.3.0a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,088 Found link https://files.pythonhosted.org/packages/ad/3e/400c07e0574bbab09f711951db2f6ad3f367a8feff8f6cbafa7af89fd67a/fibsem-0.3.0a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0a0 2025-10-15T14:23:36,089 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/df/fb/4bad22a49352a49befdb7d1513163de5d8d1a4cfb0e60fa3ac4c67f20482/fibsem-0.3.0a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,090 Found link https://files.pythonhosted.org/packages/4e/58/d870caa49f7754b016226db2b7f0ec101164622fc2e82511e7bae7f95af6/fibsem-0.3.0a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0a1 2025-10-15T14:23:36,091 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/05/51/0a0cc14778c2ae7f68a601aa26821327fc35e08bc81546ba6e3d10bc704f/fibsem-0.3.0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,092 Found link https://files.pythonhosted.org/packages/fc/2b/fea39a412194d35634c6d7f2e0768021aa0f024b880a17251a3f377e1c5c/fibsem-0.3.0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0 2025-10-15T14:23:36,093 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/32/8b/d53be8a146bfa866e850b13e6b80977d4c1bc527852fc4d0c0cfe0b6fc56/fibsem-0.3.1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,094 Found link https://files.pythonhosted.org/packages/52/84/03322d031fa283e8c468f6e706d59b3efe59dbb4e2341ffa012c5f68c127/fibsem-0.3.1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.1 2025-10-15T14:23:36,094 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/07/65/22b4f873c57c647b123c552214de8f533f12706e6ff2b419f08b02c6f421/fibsem-0.3.2a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,096 Found link https://files.pythonhosted.org/packages/78/de/5da6cf780c6ae414322a1fd3ae2f80223b2ab197b5045886658688b67986/fibsem-0.3.2a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.2a1 2025-10-15T14:23:36,097 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/f1/9d/ddd526104faf19ad44ad941b136dc14a30e289abdfdffba15bc11d34580d/fibsem-0.3.2-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,098 Found link https://files.pythonhosted.org/packages/ef/10/13c01c548f92955d5069ea9caebdd1023f876a338bc336ac42356f609ee3/fibsem-0.3.2.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.2 2025-10-15T14:23:36,099 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/11/d6/ca062c93720e61354700869b036fbf65a1c66d5ce32d7d6c4bc341aacc1b/fibsem-0.3.3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,100 Found link https://files.pythonhosted.org/packages/4e/ae/8048dff3e2eeb2c922176c5c412f1aed2346897e814bb76d175a9c1cd82e/fibsem-0.3.3.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.3 2025-10-15T14:23:36,101 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/21/59/9dd2fd247baf0dcb2eed618b0f769f5bc1536091bc1496b73c0938f40c46/fibsem-0.3.4-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,102 Found link https://files.pythonhosted.org/packages/9f/62/1216f24d3f73e3d59fdd03335ac32354d65b09adf33df98bbe0e5557435c/fibsem-0.3.4.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.4 2025-10-15T14:23:36,103 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/33/da/3b0edd81d35e70a37a7c6971bc14cf6f1319bbb2f6134a154a8b28438ae7/fibsem-0.3.5a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,104 Found link https://files.pythonhosted.org/packages/3d/9c/ab22b6240afebb565dc876215d16bc04f542f0ff2e613c67b4672f9204c2/fibsem-0.3.5a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.3.5a0 2025-10-15T14:23:36,105 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/0f/a4/5e57da3c16013f96e4561ad7e626c80effe866291c940fec4e5fbae41422/fibsem-0.3.5a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,106 Found link https://files.pythonhosted.org/packages/f9/e9/9befd7e3843a21457f35f510c64de8e6838290535a98a395fa6e5908bf02/fibsem-0.3.5a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.3.5a1 2025-10-15T14:23:36,107 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/75/eb/25cdfe7f1f81b41f7fbbd9cf96b56a98d7f4742591e5c3a8fb339a069a7d/fibsem-0.3.5-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,108 Found link https://files.pythonhosted.org/packages/8a/7e/10d7149bc1716834fedc742963e72fcc96bd285123f16709977bcb2684e9/fibsem-0.3.5.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.3.5 2025-10-15T14:23:36,109 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/ae/f8/9c2df761ed582f1c2c92c7c46b6ee4aa2a8f1619d6e401de8385fc6e00e9/fibsem-0.4.0a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,110 Found link https://files.pythonhosted.org/packages/64/12/714c2603b3b3b4ebcfac53ade0c2ed0d224ab2a8bd917afd9fe00d5413d5/fibsem-0.4.0a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.0a0 2025-10-15T14:23:36,111 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/95/33/9eefd81e39af42a7532203895ed23f99a09f414d85b6e9284aa476b102bc/fibsem-0.4.0a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,112 Found link https://files.pythonhosted.org/packages/1e/5e/26a692b01fbe9c5364137c3148600c9e2233781c9a0e34c8bfe1da84893d/fibsem-0.4.0a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.0a1 2025-10-15T14:23:36,113 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/ec/ff/909e849d3be278770eb1508a10e2f939921f5ab95efa8c89a151c4521fa2/fibsem-0.4.0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,114 Found link https://files.pythonhosted.org/packages/89/99/54e5d7dcca80171de48c15cffa723ebf5faf35d9200751a7b14f034219c9/fibsem-0.4.0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.0 2025-10-15T14:23:36,115 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/b7/54/92008c36160b8efa013e845b339c19a50667ab80d8cd211a0b0136e4a378/fibsem-0.4.1a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,116 Found link https://files.pythonhosted.org/packages/09/b9/b86de8ca0eac74efc8b1e2377d831c85ab8d262ad6adf5bdb8bf88d709ea/fibsem-0.4.1a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a0 2025-10-15T14:23:36,117 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/b0/20/91878a10a278dbf43d56e655b3713730fd3a0a6335ced331bd4af4fc874e/fibsem-0.4.1a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,118 Found link https://files.pythonhosted.org/packages/e5/17/b068e52e2c71cdc8828a5f0f31a356c0b7e09cb265efc2ffa08b2ab70ec9/fibsem-0.4.1a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a1 2025-10-15T14:23:36,119 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/eb/f7/bc7aef2af42dbf3f5648ddd9c4c7930481ede0645e443a87d87e23dc3f08/fibsem-0.4.1a2-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,120 Found link https://files.pythonhosted.org/packages/9e/83/be802fe2f6e6fb705ebac5145db3d3a939d1b5e1327cb5bb8ad45c5f4305/fibsem-0.4.1a2.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a2 2025-10-15T14:23:36,122 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/15/82/c99977c3335d171af14c03d2f53a4a1bd048224ed87c01f80bc24340b105/fibsem-0.4.1a3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,123 Found link https://files.pythonhosted.org/packages/f9/e9/54e857b1e5bb2b435024c52d8abb0b427ef158d26586e52a86f434714e0c/fibsem-0.4.1a3.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a3 2025-10-15T14:23:36,123 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/d0/9c/60e16a3d93af71b12812af969a172d1b9d369b960f60943f10ece0a2d167/fibsem-0.4.1a4-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,124 Found link https://files.pythonhosted.org/packages/19/7c/6056a88900926891a94bffde93b3a015c9c4dc5dfa9befff3f3933894309/fibsem-0.4.1a4.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a4 2025-10-15T14:23:36,125 Fetching project page and analyzing links: https://www.piwheels.org/simple/fibsem/ 2025-10-15T14:23:36,126 Getting page https://www.piwheels.org/simple/fibsem/ 2025-10-15T14:23:36,128 Found index url https://www.piwheels.org/simple 2025-10-15T14:23:36,312 Fetched page https://www.piwheels.org/simple/fibsem/ as text/html 2025-10-15T14:23:36,319 Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.4.1a4-py3-none-any.whl#sha256=2f04e69d16c03c706c43703b5ce41458efa13fe47eaa337b74e0d806509d3612 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,319 Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.4.1a3-py3-none-any.whl#sha256=620cc24270b7a249a18139807818849e86a947f852c570645bc9f2c3b71db009 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,320 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a2-py3-none-any.whl#sha256=5557b81b8968a7f877b11c83853ed170098f2ee12566d77d98858c338aafc987 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,321 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a1-py3-none-any.whl#sha256=434323dc920982d3a11a05f9a371b789c651c079f5b3f52b4e0f9767e023a66d (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,321 Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.4.1a0-py3-none-any.whl#sha256=8cdf5947bf8ac28f8c66c56b535af7e4642d6ef9e668f3d3b7c2152ded7de2a9 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,322 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.0a1-py3-none-any.whl#sha256=35162b65a87e942fdae287f95d40ff34365a9fc9e91bce94cc45ebc8282649f4 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,322 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.0a0-py3-none-any.whl#sha256=ca3bfce078100cd46e8df58808fc5047703e27d0a7caee586a6752762440536f (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,323 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.5-py3-none-any.whl#sha256=f8cb477984f69afce9e1c14235d4b8e40a1f277935b6f52ef50c0eca324cd39e (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,324 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.5a1-py3-none-any.whl#sha256=77b52127685127a616d9707a30d4cb10f49b742d812f27d3e89e5c56bfdce097 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,324 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.5a0-py3-none-any.whl#sha256=d78b21af3febbdf8bf524f0bc121a306f875d0db18bac01bcca54e4e9a1e51e2 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2025-10-15T14:23:36,325 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.4-py3-none-any.whl#sha256=935ab1545a500df6e9fec6103fc7f2bbcd2709303844c87d666bb1d16193beab (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,325 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.3-py3-none-any.whl#sha256=a7b254be73ea431bbe9eba8b7fd7b425ad830568cfbf5ec0b574b350178d2e76 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,326 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.2-py3-none-any.whl#sha256=8dad9ff09be4720143e8d4a3866d6b17ed08c732b68f47dd110d400bfe2be28e (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,326 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.2a1-py3-none-any.whl#sha256=f5309995df9eadda9e861edc7dd4d07452210426b10d4c4da4c2b405eb8e2ac4 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,327 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.1-py3-none-any.whl#sha256=72ca906da40a31401ad7636438566ad77e6d6ef434c85d4517c7411645c41027 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,327 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.0-py3-none-any.whl#sha256=61d366cbae13eecb465c904050eba503bb875f93c6e743eedcfae3ca9cf5e2ac (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,328 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.0a1-py3-none-any.whl#sha256=21ae6ee6be3ad2f8832a6d457a20aea2627a25340a672d8a42f9f0488d8a710c (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,328 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.0a0-py3-none-any.whl#sha256=4e29ec9054961edc9242d2cb332c01000bcb0574069ad23261e41ac7f1489a4f (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2025-10-15T14:23:36,329 Skipping link: not a file: https://www.piwheels.org/simple/fibsem/ 2025-10-15T14:23:36,330 Skipping link: not a file: https://pypi.org/simple/fibsem/ 2025-10-15T14:23:36,350 Given no hashes to check 1 links for project 'fibsem': discarding no candidates 2025-10-15T14:23:36,368 Collecting fibsem==0.4.0 2025-10-15T14:23:36,370 Created temporary directory: /tmp/pip-unpack-wtlmenaq 2025-10-15T14:23:36,505 Downloading fibsem-0.4.0.tar.gz (9.9 MB) 2025-10-15T14:23:38,218 Added fibsem==0.4.0 from https://files.pythonhosted.org/packages/89/99/54e5d7dcca80171de48c15cffa723ebf5faf35d9200751a7b14f034219c9/fibsem-0.4.0.tar.gz to build tracker '/tmp/pip-build-tracker-5dyyi6cl' 2025-10-15T14:23:38,225 Created temporary directory: /tmp/pip-build-env-a9ht2hx7 2025-10-15T14:23:38,230 Installing build dependencies: started 2025-10-15T14:23:38,231 Running command pip subprocess to install build dependencies 2025-10-15T14:23:39,394 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-10-15T14:23:40,013 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-15T14:23:40,036 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-15T14:23:41,843 Collecting setuptools>=45 2025-10-15T14:23:41,944 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-10-15T14:23:42,225 Collecting wheel 2025-10-15T14:23:42,243 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2025-10-15T14:23:42,581 Collecting setuptools_scm[toml]>=6.2 2025-10-15T14:23:42,606 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.1-py3-none-any.whl (62 kB) 2025-10-15T14:23:42,805 Collecting packaging>=20 2025-10-15T14:23:42,821 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2025-10-15T14:23:45,887 Installing collected packages: wheel, setuptools, packaging, setuptools_scm 2025-10-15T14:23:46,129 Creating /tmp/pip-build-env-a9ht2hx7/overlay/local/bin 2025-10-15T14:23:46,131 changing mode of /tmp/pip-build-env-a9ht2hx7/overlay/local/bin/wheel to 755 2025-10-15T14:23:50,104 changing mode of /tmp/pip-build-env-a9ht2hx7/overlay/local/bin/setuptools-scm to 755 2025-10-15T14:23:50,135 Successfully installed packaging-25.0 setuptools-80.9.0 setuptools_scm-9.2.1 wheel-0.45.1 2025-10-15T14:23:50,423 Installing build dependencies: finished with status 'done' 2025-10-15T14:23:50,430 Getting requirements to build wheel: started 2025-10-15T14:23:50,432 Running command Getting requirements to build wheel 2025-10-15T14:23:51,088 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-10-15T14:23:51,128 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-15T14:23:51,128 !! 2025-10-15T14:23:51,130 ******************************************************************************** 2025-10-15T14:23:51,131 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-15T14:23:51,132 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-15T14:23:51,133 or your builds will no longer be supported. 2025-10-15T14:23:51,134 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-15T14:23:51,134 ******************************************************************************** 2025-10-15T14:23:51,135 !! 2025-10-15T14:23:51,136 corresp(dist, value, root_dir) 2025-10-15T14:23:51,220 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-15T14:23:51,220 !! 2025-10-15T14:23:51,221 ******************************************************************************** 2025-10-15T14:23:51,222 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-15T14:23:51,223 License :: OSI Approved :: MIT License 2025-10-15T14:23:51,224 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-15T14:23:51,225 ******************************************************************************** 2025-10-15T14:23:51,226 !! 2025-10-15T14:23:51,227 dist._finalize_license_expression() 2025-10-15T14:23:51,228 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-15T14:23:51,228 !! 2025-10-15T14:23:51,229 ******************************************************************************** 2025-10-15T14:23:51,230 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-15T14:23:51,231 License :: OSI Approved :: MIT License 2025-10-15T14:23:51,232 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-15T14:23:51,232 ******************************************************************************** 2025-10-15T14:23:51,233 !! 2025-10-15T14:23:51,234 self._finalize_license_expression() 2025-10-15T14:23:51,236 running egg_info 2025-10-15T14:23:51,244 writing fibsem.egg-info/PKG-INFO 2025-10-15T14:23:51,254 writing dependency_links to fibsem.egg-info/dependency_links.txt 2025-10-15T14:23:51,256 writing entry points to fibsem.egg-info/entry_points.txt 2025-10-15T14:23:51,262 writing requirements to fibsem.egg-info/requires.txt 2025-10-15T14:23:51,263 writing top-level names to fibsem.egg-info/top_level.txt 2025-10-15T14:23:51,315 listing git files failed - pretending there aren't any 2025-10-15T14:23:51,322 reading manifest file 'fibsem.egg-info/SOURCES.txt' 2025-10-15T14:23:51,359 reading manifest template 'MANIFEST.in' 2025-10-15T14:23:51,361 warning: no previously-included files matching '__pycache__' found under directory '*' 2025-10-15T14:23:51,362 warning: no previously-included files matching '*.py[co]' found under directory '*' 2025-10-15T14:23:51,363 warning: no previously-included files matching '*.ui' found under directory '*' 2025-10-15T14:23:51,364 adding license file 'LICENSE' 2025-10-15T14:23:51,373 writing manifest file 'fibsem.egg-info/SOURCES.txt' 2025-10-15T14:23:51,476 Getting requirements to build wheel: finished with status 'done' 2025-10-15T14:23:51,479 Created temporary directory: /tmp/pip-modern-metadata-2y3sced0 2025-10-15T14:23:51,482 Preparing metadata (pyproject.toml): started 2025-10-15T14:23:51,483 Running command Preparing metadata (pyproject.toml) 2025-10-15T14:23:52,083 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-10-15T14:23:52,123 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-15T14:23:52,123 !! 2025-10-15T14:23:52,124 ******************************************************************************** 2025-10-15T14:23:52,125 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-15T14:23:52,126 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-15T14:23:52,127 or your builds will no longer be supported. 2025-10-15T14:23:52,128 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-15T14:23:52,128 ******************************************************************************** 2025-10-15T14:23:52,129 !! 2025-10-15T14:23:52,130 corresp(dist, value, root_dir) 2025-10-15T14:23:52,210 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-15T14:23:52,211 !! 2025-10-15T14:23:52,212 ******************************************************************************** 2025-10-15T14:23:52,212 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-15T14:23:52,214 License :: OSI Approved :: MIT License 2025-10-15T14:23:52,215 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-15T14:23:52,216 ******************************************************************************** 2025-10-15T14:23:52,217 !! 2025-10-15T14:23:52,217 dist._finalize_license_expression() 2025-10-15T14:23:52,218 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-15T14:23:52,219 !! 2025-10-15T14:23:52,220 ******************************************************************************** 2025-10-15T14:23:52,220 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-15T14:23:52,221 License :: OSI Approved :: MIT License 2025-10-15T14:23:52,222 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-15T14:23:52,222 ******************************************************************************** 2025-10-15T14:23:52,223 !! 2025-10-15T14:23:52,223 self._finalize_license_expression() 2025-10-15T14:23:52,227 running dist_info 2025-10-15T14:23:52,241 creating /tmp/pip-modern-metadata-2y3sced0/fibsem.egg-info 2025-10-15T14:23:52,242 writing /tmp/pip-modern-metadata-2y3sced0/fibsem.egg-info/PKG-INFO 2025-10-15T14:23:52,253 writing dependency_links to /tmp/pip-modern-metadata-2y3sced0/fibsem.egg-info/dependency_links.txt 2025-10-15T14:23:52,254 writing entry points to /tmp/pip-modern-metadata-2y3sced0/fibsem.egg-info/entry_points.txt 2025-10-15T14:23:52,260 writing requirements to /tmp/pip-modern-metadata-2y3sced0/fibsem.egg-info/requires.txt 2025-10-15T14:23:52,262 writing top-level names to /tmp/pip-modern-metadata-2y3sced0/fibsem.egg-info/top_level.txt 2025-10-15T14:23:52,263 writing manifest file '/tmp/pip-modern-metadata-2y3sced0/fibsem.egg-info/SOURCES.txt' 2025-10-15T14:23:52,309 listing git files failed - pretending there aren't any 2025-10-15T14:23:52,316 reading manifest file '/tmp/pip-modern-metadata-2y3sced0/fibsem.egg-info/SOURCES.txt' 2025-10-15T14:23:52,318 reading manifest template 'MANIFEST.in' 2025-10-15T14:23:52,319 warning: no previously-included files matching '__pycache__' found under directory '*' 2025-10-15T14:23:52,320 warning: no previously-included files matching '*.py[co]' found under directory '*' 2025-10-15T14:23:52,321 warning: no previously-included files matching '*.ui' found under directory '*' 2025-10-15T14:23:52,322 adding license file 'LICENSE' 2025-10-15T14:23:52,324 writing manifest file '/tmp/pip-modern-metadata-2y3sced0/fibsem.egg-info/SOURCES.txt' 2025-10-15T14:23:52,325 creating '/tmp/pip-modern-metadata-2y3sced0/fibsem-0.4.0.dist-info' 2025-10-15T14:23:52,458 Preparing metadata (pyproject.toml): finished with status 'done' 2025-10-15T14:23:52,463 Source in /tmp/pip-wheel-lb3zz5yy/fibsem_8f2987a0bbf04e5ab3c8e914044677f5 has version 0.4.0, which satisfies requirement fibsem==0.4.0 from https://files.pythonhosted.org/packages/89/99/54e5d7dcca80171de48c15cffa723ebf5faf35d9200751a7b14f034219c9/fibsem-0.4.0.tar.gz 2025-10-15T14:23:52,464 Removed fibsem==0.4.0 from https://files.pythonhosted.org/packages/89/99/54e5d7dcca80171de48c15cffa723ebf5faf35d9200751a7b14f034219c9/fibsem-0.4.0.tar.gz from build tracker '/tmp/pip-build-tracker-5dyyi6cl' 2025-10-15T14:23:52,470 Created temporary directory: /tmp/pip-unpack-aw009kfw 2025-10-15T14:23:52,470 Building wheels for collected packages: fibsem 2025-10-15T14:23:52,475 Created temporary directory: /tmp/pip-wheel-m9weqs6e 2025-10-15T14:23:52,475 Destination directory: /tmp/pip-wheel-m9weqs6e 2025-10-15T14:23:52,477 Building wheel for fibsem (pyproject.toml): started 2025-10-15T14:23:52,479 Running command Building wheel for fibsem (pyproject.toml) 2025-10-15T14:23:53,064 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-10-15T14:23:53,102 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-15T14:23:53,103 !! 2025-10-15T14:23:53,104 ******************************************************************************** 2025-10-15T14:23:53,105 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-15T14:23:53,106 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-15T14:23:53,106 or your builds will no longer be supported. 2025-10-15T14:23:53,107 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-15T14:23:53,107 ******************************************************************************** 2025-10-15T14:23:53,108 !! 2025-10-15T14:23:53,109 corresp(dist, value, root_dir) 2025-10-15T14:23:53,184 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-15T14:23:53,184 !! 2025-10-15T14:23:53,185 ******************************************************************************** 2025-10-15T14:23:53,186 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-15T14:23:53,187 License :: OSI Approved :: MIT License 2025-10-15T14:23:53,188 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-15T14:23:53,188 ******************************************************************************** 2025-10-15T14:23:53,189 !! 2025-10-15T14:23:53,190 dist._finalize_license_expression() 2025-10-15T14:23:53,191 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-15T14:23:53,192 !! 2025-10-15T14:23:53,193 ******************************************************************************** 2025-10-15T14:23:53,194 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-15T14:23:53,195 License :: OSI Approved :: MIT License 2025-10-15T14:23:53,196 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-15T14:23:53,197 ******************************************************************************** 2025-10-15T14:23:53,198 !! 2025-10-15T14:23:53,199 self._finalize_license_expression() 2025-10-15T14:23:53,200 running bdist_wheel 2025-10-15T14:23:53,220 running build 2025-10-15T14:23:53,221 running build_py 2025-10-15T14:23:53,229 creating build/lib/fibsem 2025-10-15T14:23:53,231 copying fibsem/alignment.py -> build/lib/fibsem 2025-10-15T14:23:53,234 copying fibsem/conversions.py -> build/lib/fibsem 2025-10-15T14:23:53,236 copying fibsem/__init__.py -> build/lib/fibsem 2025-10-15T14:23:53,238 copying fibsem/movement.py -> build/lib/fibsem 2025-10-15T14:23:53,240 copying fibsem/calibration.py -> build/lib/fibsem 2025-10-15T14:23:53,242 copying fibsem/microscope.py -> build/lib/fibsem 2025-10-15T14:23:53,248 copying fibsem/acquire.py -> build/lib/fibsem 2025-10-15T14:23:53,251 copying fibsem/gis.py -> build/lib/fibsem 2025-10-15T14:23:53,253 copying fibsem/configuration.py -> build/lib/fibsem 2025-10-15T14:23:53,255 copying fibsem/utils.py -> build/lib/fibsem 2025-10-15T14:23:53,258 copying fibsem/constants.py -> build/lib/fibsem 2025-10-15T14:23:53,259 copying fibsem/config.py -> build/lib/fibsem 2025-10-15T14:23:53,262 copying fibsem/structures.py -> build/lib/fibsem 2025-10-15T14:23:53,265 copying fibsem/validation.py -> build/lib/fibsem 2025-10-15T14:23:53,268 running egg_info 2025-10-15T14:23:53,281 writing fibsem.egg-info/PKG-INFO 2025-10-15T14:23:53,291 writing dependency_links to fibsem.egg-info/dependency_links.txt 2025-10-15T14:23:53,293 writing entry points to fibsem.egg-info/entry_points.txt 2025-10-15T14:23:53,298 writing requirements to fibsem.egg-info/requires.txt 2025-10-15T14:23:53,299 writing top-level names to fibsem.egg-info/top_level.txt 2025-10-15T14:23:53,334 listing git files failed - pretending there aren't any 2025-10-15T14:23:53,340 reading manifest file 'fibsem.egg-info/SOURCES.txt' 2025-10-15T14:23:53,353 reading manifest template 'MANIFEST.in' 2025-10-15T14:23:53,355 warning: no previously-included files matching '__pycache__' found under directory '*' 2025-10-15T14:23:53,356 warning: no previously-included files matching '*.py[co]' found under directory '*' 2025-10-15T14:23:53,357 warning: no previously-included files matching '*.ui' found under directory '*' 2025-10-15T14:23:53,358 adding license file 'LICENSE' 2025-10-15T14:23:53,367 writing manifest file 'fibsem.egg-info/SOURCES.txt' 2025-10-15T14:23:53,369 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.chat' is absent from the `packages` configuration. 2025-10-15T14:23:53,370 !! 2025-10-15T14:23:53,371 ******************************************************************************** 2025-10-15T14:23:53,371 ############################ 2025-10-15T14:23:53,372 # Package would be ignored # 2025-10-15T14:23:53,372 ############################ 2025-10-15T14:23:53,373 Python recognizes 'fibsem.chat' as an importable package[^1], 2025-10-15T14:23:53,373 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,374 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,375 package, please make sure that 'fibsem.chat' is explicitly added 2025-10-15T14:23:53,375 to the `packages` configuration field. 2025-10-15T14:23:53,376 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,377 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,377 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,378 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,379 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,381 If you don't want 'fibsem.chat' to be distributed and are 2025-10-15T14:23:53,381 already explicitly excluding 'fibsem.chat' via 2025-10-15T14:23:53,382 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,382 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,383 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,384 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,385 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,387 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,387 even if it does not contain any `.py` files. 2025-10-15T14:23:53,388 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,388 directory, all directories are treated like packages. 2025-10-15T14:23:53,389 ******************************************************************************** 2025-10-15T14:23:53,390 !! 2025-10-15T14:23:53,390 check.warn(importable) 2025-10-15T14:23:53,391 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.config' is absent from the `packages` configuration. 2025-10-15T14:23:53,391 !! 2025-10-15T14:23:53,393 ******************************************************************************** 2025-10-15T14:23:53,393 ############################ 2025-10-15T14:23:53,394 # Package would be ignored # 2025-10-15T14:23:53,394 ############################ 2025-10-15T14:23:53,394 Python recognizes 'fibsem.config' as an importable package[^1], 2025-10-15T14:23:53,395 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,396 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,396 package, please make sure that 'fibsem.config' is explicitly added 2025-10-15T14:23:53,396 to the `packages` configuration field. 2025-10-15T14:23:53,397 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,398 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,398 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,399 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,399 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,400 If you don't want 'fibsem.config' to be distributed and are 2025-10-15T14:23:53,401 already explicitly excluding 'fibsem.config' via 2025-10-15T14:23:53,401 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,401 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,402 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,403 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,404 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,405 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,405 even if it does not contain any `.py` files. 2025-10-15T14:23:53,406 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,406 directory, all directories are treated like packages. 2025-10-15T14:23:53,407 ******************************************************************************** 2025-10-15T14:23:53,408 !! 2025-10-15T14:23:53,408 check.warn(importable) 2025-10-15T14:23:53,409 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.db' is absent from the `packages` configuration. 2025-10-15T14:23:53,409 !! 2025-10-15T14:23:53,410 ******************************************************************************** 2025-10-15T14:23:53,411 ############################ 2025-10-15T14:23:53,411 # Package would be ignored # 2025-10-15T14:23:53,412 ############################ 2025-10-15T14:23:53,412 Python recognizes 'fibsem.db' as an importable package[^1], 2025-10-15T14:23:53,413 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,414 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,414 package, please make sure that 'fibsem.db' is explicitly added 2025-10-15T14:23:53,415 to the `packages` configuration field. 2025-10-15T14:23:53,416 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,416 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,417 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,418 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,419 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,420 If you don't want 'fibsem.db' to be distributed and are 2025-10-15T14:23:53,420 already explicitly excluding 'fibsem.db' via 2025-10-15T14:23:53,420 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,421 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,421 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,422 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,422 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,424 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,424 even if it does not contain any `.py` files. 2025-10-15T14:23:53,424 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,425 directory, all directories are treated like packages. 2025-10-15T14:23:53,425 ******************************************************************************** 2025-10-15T14:23:53,426 !! 2025-10-15T14:23:53,426 check.warn(importable) 2025-10-15T14:23:53,427 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.db.v2' is absent from the `packages` configuration. 2025-10-15T14:23:53,427 !! 2025-10-15T14:23:53,428 ******************************************************************************** 2025-10-15T14:23:53,428 ############################ 2025-10-15T14:23:53,428 # Package would be ignored # 2025-10-15T14:23:53,429 ############################ 2025-10-15T14:23:53,429 Python recognizes 'fibsem.db.v2' as an importable package[^1], 2025-10-15T14:23:53,430 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,431 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,431 package, please make sure that 'fibsem.db.v2' is explicitly added 2025-10-15T14:23:53,432 to the `packages` configuration field. 2025-10-15T14:23:53,433 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,433 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,434 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,435 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,436 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,437 If you don't want 'fibsem.db.v2' to be distributed and are 2025-10-15T14:23:53,437 already explicitly excluding 'fibsem.db.v2' via 2025-10-15T14:23:53,438 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,438 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,439 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,440 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,441 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,442 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,442 even if it does not contain any `.py` files. 2025-10-15T14:23:53,443 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,443 directory, all directories are treated like packages. 2025-10-15T14:23:53,444 ******************************************************************************** 2025-10-15T14:23:53,445 !! 2025-10-15T14:23:53,445 check.warn(importable) 2025-10-15T14:23:53,446 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.db.v3' is absent from the `packages` configuration. 2025-10-15T14:23:53,447 !! 2025-10-15T14:23:53,447 ******************************************************************************** 2025-10-15T14:23:53,448 ############################ 2025-10-15T14:23:53,448 # Package would be ignored # 2025-10-15T14:23:53,448 ############################ 2025-10-15T14:23:53,449 Python recognizes 'fibsem.db.v3' as an importable package[^1], 2025-10-15T14:23:53,449 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,450 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,450 package, please make sure that 'fibsem.db.v3' is explicitly added 2025-10-15T14:23:53,451 to the `packages` configuration field. 2025-10-15T14:23:53,451 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,452 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,452 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,453 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,454 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,454 If you don't want 'fibsem.db.v3' to be distributed and are 2025-10-15T14:23:53,455 already explicitly excluding 'fibsem.db.v3' via 2025-10-15T14:23:53,455 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,456 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,456 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,457 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,458 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,460 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,460 even if it does not contain any `.py` files. 2025-10-15T14:23:53,460 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,461 directory, all directories are treated like packages. 2025-10-15T14:23:53,461 ******************************************************************************** 2025-10-15T14:23:53,462 !! 2025-10-15T14:23:53,463 check.warn(importable) 2025-10-15T14:23:53,463 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.detection' is absent from the `packages` configuration. 2025-10-15T14:23:53,466 !! 2025-10-15T14:23:53,467 ******************************************************************************** 2025-10-15T14:23:53,468 ############################ 2025-10-15T14:23:53,468 # Package would be ignored # 2025-10-15T14:23:53,469 ############################ 2025-10-15T14:23:53,469 Python recognizes 'fibsem.detection' as an importable package[^1], 2025-10-15T14:23:53,470 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,471 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,471 package, please make sure that 'fibsem.detection' is explicitly added 2025-10-15T14:23:53,472 to the `packages` configuration field. 2025-10-15T14:23:53,473 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,474 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,474 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,476 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,476 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,477 If you don't want 'fibsem.detection' to be distributed and are 2025-10-15T14:23:53,478 already explicitly excluding 'fibsem.detection' via 2025-10-15T14:23:53,478 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,479 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,479 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,480 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,481 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,483 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,483 even if it does not contain any `.py` files. 2025-10-15T14:23:53,484 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,484 directory, all directories are treated like packages. 2025-10-15T14:23:53,484 ******************************************************************************** 2025-10-15T14:23:53,485 !! 2025-10-15T14:23:53,486 check.warn(importable) 2025-10-15T14:23:53,486 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.detection.test_images' is absent from the `packages` configuration. 2025-10-15T14:23:53,487 !! 2025-10-15T14:23:53,488 ******************************************************************************** 2025-10-15T14:23:53,488 ############################ 2025-10-15T14:23:53,489 # Package would be ignored # 2025-10-15T14:23:53,490 ############################ 2025-10-15T14:23:53,490 Python recognizes 'fibsem.detection.test_images' as an importable package[^1], 2025-10-15T14:23:53,491 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,492 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,492 package, please make sure that 'fibsem.detection.test_images' is explicitly added 2025-10-15T14:23:53,493 to the `packages` configuration field. 2025-10-15T14:23:53,494 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,495 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,495 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,496 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,497 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,498 If you don't want 'fibsem.detection.test_images' to be distributed and are 2025-10-15T14:23:53,499 already explicitly excluding 'fibsem.detection.test_images' via 2025-10-15T14:23:53,499 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,500 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,501 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,502 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,503 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,504 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,505 even if it does not contain any `.py` files. 2025-10-15T14:23:53,506 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,506 directory, all directories are treated like packages. 2025-10-15T14:23:53,507 ******************************************************************************** 2025-10-15T14:23:53,508 !! 2025-10-15T14:23:53,508 check.warn(importable) 2025-10-15T14:23:53,509 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.detection.test_images.serial' is absent from the `packages` configuration. 2025-10-15T14:23:53,509 !! 2025-10-15T14:23:53,510 ******************************************************************************** 2025-10-15T14:23:53,511 ############################ 2025-10-15T14:23:53,511 # Package would be ignored # 2025-10-15T14:23:53,512 ############################ 2025-10-15T14:23:53,512 Python recognizes 'fibsem.detection.test_images.serial' as an importable package[^1], 2025-10-15T14:23:53,513 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,514 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,514 package, please make sure that 'fibsem.detection.test_images.serial' is explicitly added 2025-10-15T14:23:53,515 to the `packages` configuration field. 2025-10-15T14:23:53,516 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,516 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,517 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,518 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,519 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,520 If you don't want 'fibsem.detection.test_images.serial' to be distributed and are 2025-10-15T14:23:53,521 already explicitly excluding 'fibsem.detection.test_images.serial' via 2025-10-15T14:23:53,521 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,522 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,523 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,524 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,525 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,526 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,527 even if it does not contain any `.py` files. 2025-10-15T14:23:53,528 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,528 directory, all directories are treated like packages. 2025-10-15T14:23:53,529 ******************************************************************************** 2025-10-15T14:23:53,530 !! 2025-10-15T14:23:53,530 check.warn(importable) 2025-10-15T14:23:53,531 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.imaging' is absent from the `packages` configuration. 2025-10-15T14:23:53,531 !! 2025-10-15T14:23:53,533 ******************************************************************************** 2025-10-15T14:23:53,533 ############################ 2025-10-15T14:23:53,534 # Package would be ignored # 2025-10-15T14:23:53,534 ############################ 2025-10-15T14:23:53,535 Python recognizes 'fibsem.imaging' as an importable package[^1], 2025-10-15T14:23:53,535 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,537 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,537 package, please make sure that 'fibsem.imaging' is explicitly added 2025-10-15T14:23:53,537 to the `packages` configuration field. 2025-10-15T14:23:53,538 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,539 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,539 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,540 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,541 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,542 If you don't want 'fibsem.imaging' to be distributed and are 2025-10-15T14:23:53,543 already explicitly excluding 'fibsem.imaging' via 2025-10-15T14:23:53,543 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,544 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,544 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,545 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,546 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,547 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,548 even if it does not contain any `.py` files. 2025-10-15T14:23:53,548 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,549 directory, all directories are treated like packages. 2025-10-15T14:23:53,550 ******************************************************************************** 2025-10-15T14:23:53,551 !! 2025-10-15T14:23:53,551 check.warn(importable) 2025-10-15T14:23:53,552 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.microscopes' is absent from the `packages` configuration. 2025-10-15T14:23:53,552 !! 2025-10-15T14:23:53,553 ******************************************************************************** 2025-10-15T14:23:53,554 ############################ 2025-10-15T14:23:53,554 # Package would be ignored # 2025-10-15T14:23:53,555 ############################ 2025-10-15T14:23:53,555 Python recognizes 'fibsem.microscopes' as an importable package[^1], 2025-10-15T14:23:53,556 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,557 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,558 package, please make sure that 'fibsem.microscopes' is explicitly added 2025-10-15T14:23:53,558 to the `packages` configuration field. 2025-10-15T14:23:53,559 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,560 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,560 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,561 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,562 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,564 If you don't want 'fibsem.microscopes' to be distributed and are 2025-10-15T14:23:53,564 already explicitly excluding 'fibsem.microscopes' via 2025-10-15T14:23:53,565 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,565 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,566 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,567 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,568 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,570 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,570 even if it does not contain any `.py` files. 2025-10-15T14:23:53,571 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,571 directory, all directories are treated like packages. 2025-10-15T14:23:53,572 ******************************************************************************** 2025-10-15T14:23:53,573 !! 2025-10-15T14:23:53,574 check.warn(importable) 2025-10-15T14:23:53,574 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.milling' is absent from the `packages` configuration. 2025-10-15T14:23:53,575 !! 2025-10-15T14:23:53,575 ******************************************************************************** 2025-10-15T14:23:53,576 ############################ 2025-10-15T14:23:53,576 # Package would be ignored # 2025-10-15T14:23:53,577 ############################ 2025-10-15T14:23:53,577 Python recognizes 'fibsem.milling' as an importable package[^1], 2025-10-15T14:23:53,578 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,579 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,579 package, please make sure that 'fibsem.milling' is explicitly added 2025-10-15T14:23:53,580 to the `packages` configuration field. 2025-10-15T14:23:53,581 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,581 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,581 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,582 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,583 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,585 If you don't want 'fibsem.milling' to be distributed and are 2025-10-15T14:23:53,585 already explicitly excluding 'fibsem.milling' via 2025-10-15T14:23:53,586 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,586 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,587 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,588 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,589 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,591 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,591 even if it does not contain any `.py` files. 2025-10-15T14:23:53,592 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,592 directory, all directories are treated like packages. 2025-10-15T14:23:53,593 ******************************************************************************** 2025-10-15T14:23:53,594 !! 2025-10-15T14:23:53,595 check.warn(importable) 2025-10-15T14:23:53,595 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.milling.patterning' is absent from the `packages` configuration. 2025-10-15T14:23:53,596 !! 2025-10-15T14:23:53,597 ******************************************************************************** 2025-10-15T14:23:53,598 ############################ 2025-10-15T14:23:53,599 # Package would be ignored # 2025-10-15T14:23:53,599 ############################ 2025-10-15T14:23:53,600 Python recognizes 'fibsem.milling.patterning' as an importable package[^1], 2025-10-15T14:23:53,600 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,602 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,602 package, please make sure that 'fibsem.milling.patterning' is explicitly added 2025-10-15T14:23:53,603 to the `packages` configuration field. 2025-10-15T14:23:53,604 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,604 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,605 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,606 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,612 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,616 If you don't want 'fibsem.milling.patterning' to be distributed and are 2025-10-15T14:23:53,619 already explicitly excluding 'fibsem.milling.patterning' via 2025-10-15T14:23:53,621 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,622 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,622 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,633 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,640 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,645 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,647 even if it does not contain any `.py` files. 2025-10-15T14:23:53,653 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,656 directory, all directories are treated like packages. 2025-10-15T14:23:53,656 ******************************************************************************** 2025-10-15T14:23:53,658 !! 2025-10-15T14:23:53,659 check.warn(importable) 2025-10-15T14:23:53,660 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.milling.strategy' is absent from the `packages` configuration. 2025-10-15T14:23:53,662 !! 2025-10-15T14:23:53,666 ******************************************************************************** 2025-10-15T14:23:53,672 ############################ 2025-10-15T14:23:53,674 # Package would be ignored # 2025-10-15T14:23:53,674 ############################ 2025-10-15T14:23:53,675 Python recognizes 'fibsem.milling.strategy' as an importable package[^1], 2025-10-15T14:23:53,675 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,677 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,677 package, please make sure that 'fibsem.milling.strategy' is explicitly added 2025-10-15T14:23:53,678 to the `packages` configuration field. 2025-10-15T14:23:53,679 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,679 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,680 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,681 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,682 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,687 If you don't want 'fibsem.milling.strategy' to be distributed and are 2025-10-15T14:23:53,689 already explicitly excluding 'fibsem.milling.strategy' via 2025-10-15T14:23:53,693 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,700 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,702 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,709 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,716 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,723 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,724 even if it does not contain any `.py` files. 2025-10-15T14:23:53,726 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,728 directory, all directories are treated like packages. 2025-10-15T14:23:53,729 ******************************************************************************** 2025-10-15T14:23:53,732 !! 2025-10-15T14:23:53,734 check.warn(importable) 2025-10-15T14:23:53,736 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.segmentation' is absent from the `packages` configuration. 2025-10-15T14:23:53,737 !! 2025-10-15T14:23:53,740 ******************************************************************************** 2025-10-15T14:23:53,741 ############################ 2025-10-15T14:23:53,742 # Package would be ignored # 2025-10-15T14:23:53,742 ############################ 2025-10-15T14:23:53,743 Python recognizes 'fibsem.segmentation' as an importable package[^1], 2025-10-15T14:23:53,743 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,744 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,745 package, please make sure that 'fibsem.segmentation' is explicitly added 2025-10-15T14:23:53,745 to the `packages` configuration field. 2025-10-15T14:23:53,746 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,747 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,747 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,748 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,749 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,750 If you don't want 'fibsem.segmentation' to be distributed and are 2025-10-15T14:23:53,751 already explicitly excluding 'fibsem.segmentation' via 2025-10-15T14:23:53,751 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,752 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,752 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,753 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,754 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,756 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,756 even if it does not contain any `.py` files. 2025-10-15T14:23:53,757 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,757 directory, all directories are treated like packages. 2025-10-15T14:23:53,758 ******************************************************************************** 2025-10-15T14:23:53,759 !! 2025-10-15T14:23:53,760 check.warn(importable) 2025-10-15T14:23:53,761 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.segmentation.docs' is absent from the `packages` configuration. 2025-10-15T14:23:53,761 !! 2025-10-15T14:23:53,762 ******************************************************************************** 2025-10-15T14:23:53,762 ############################ 2025-10-15T14:23:53,763 # Package would be ignored # 2025-10-15T14:23:53,763 ############################ 2025-10-15T14:23:53,764 Python recognizes 'fibsem.segmentation.docs' as an importable package[^1], 2025-10-15T14:23:53,764 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,765 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,766 package, please make sure that 'fibsem.segmentation.docs' is explicitly added 2025-10-15T14:23:53,766 to the `packages` configuration field. 2025-10-15T14:23:53,767 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,767 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,768 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,769 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,770 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,772 If you don't want 'fibsem.segmentation.docs' to be distributed and are 2025-10-15T14:23:53,772 already explicitly excluding 'fibsem.segmentation.docs' via 2025-10-15T14:23:53,772 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,773 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,773 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,774 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,775 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,777 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,778 even if it does not contain any `.py` files. 2025-10-15T14:23:53,778 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,779 directory, all directories are treated like packages. 2025-10-15T14:23:53,780 ******************************************************************************** 2025-10-15T14:23:53,781 !! 2025-10-15T14:23:53,781 check.warn(importable) 2025-10-15T14:23:53,782 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.segmentation.docs.imgs.combined' is absent from the `packages` configuration. 2025-10-15T14:23:53,782 !! 2025-10-15T14:23:53,784 ******************************************************************************** 2025-10-15T14:23:53,784 ############################ 2025-10-15T14:23:53,785 # Package would be ignored # 2025-10-15T14:23:53,785 ############################ 2025-10-15T14:23:53,786 Python recognizes 'fibsem.segmentation.docs.imgs.combined' as an importable package[^1], 2025-10-15T14:23:53,786 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,787 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,788 package, please make sure that 'fibsem.segmentation.docs.imgs.combined' is explicitly added 2025-10-15T14:23:53,788 to the `packages` configuration field. 2025-10-15T14:23:53,790 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,790 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,791 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,792 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,793 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,794 If you don't want 'fibsem.segmentation.docs.imgs.combined' to be distributed and are 2025-10-15T14:23:53,794 already explicitly excluding 'fibsem.segmentation.docs.imgs.combined' via 2025-10-15T14:23:53,795 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,795 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,796 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,796 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,798 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,800 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,800 even if it does not contain any `.py` files. 2025-10-15T14:23:53,801 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,801 directory, all directories are treated like packages. 2025-10-15T14:23:53,801 ******************************************************************************** 2025-10-15T14:23:53,802 !! 2025-10-15T14:23:53,803 check.warn(importable) 2025-10-15T14:23:53,804 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.segmentation.docs.imgs.labelled' is absent from the `packages` configuration. 2025-10-15T14:23:53,805 !! 2025-10-15T14:23:53,806 ******************************************************************************** 2025-10-15T14:23:53,806 ############################ 2025-10-15T14:23:53,807 # Package would be ignored # 2025-10-15T14:23:53,807 ############################ 2025-10-15T14:23:53,808 Python recognizes 'fibsem.segmentation.docs.imgs.labelled' as an importable package[^1], 2025-10-15T14:23:53,808 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,809 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,810 package, please make sure that 'fibsem.segmentation.docs.imgs.labelled' is explicitly added 2025-10-15T14:23:53,810 to the `packages` configuration field. 2025-10-15T14:23:53,812 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,812 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,813 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,814 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,815 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,816 If you don't want 'fibsem.segmentation.docs.imgs.labelled' to be distributed and are 2025-10-15T14:23:53,816 already explicitly excluding 'fibsem.segmentation.docs.imgs.labelled' via 2025-10-15T14:23:53,817 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,818 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,818 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,819 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,821 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,822 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,823 even if it does not contain any `.py` files. 2025-10-15T14:23:53,823 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,824 directory, all directories are treated like packages. 2025-10-15T14:23:53,825 ******************************************************************************** 2025-10-15T14:23:53,825 !! 2025-10-15T14:23:53,826 check.warn(importable) 2025-10-15T14:23:53,826 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.segmentation.docs.imgs.raw' is absent from the `packages` configuration. 2025-10-15T14:23:53,827 !! 2025-10-15T14:23:53,828 ******************************************************************************** 2025-10-15T14:23:53,828 ############################ 2025-10-15T14:23:53,829 # Package would be ignored # 2025-10-15T14:23:53,829 ############################ 2025-10-15T14:23:53,830 Python recognizes 'fibsem.segmentation.docs.imgs.raw' as an importable package[^1], 2025-10-15T14:23:53,830 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,831 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,832 package, please make sure that 'fibsem.segmentation.docs.imgs.raw' is explicitly added 2025-10-15T14:23:53,832 to the `packages` configuration field. 2025-10-15T14:23:53,833 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,834 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,834 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,835 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,836 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,837 If you don't want 'fibsem.segmentation.docs.imgs.raw' to be distributed and are 2025-10-15T14:23:53,837 already explicitly excluding 'fibsem.segmentation.docs.imgs.raw' via 2025-10-15T14:23:53,838 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,838 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,839 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,840 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,841 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,842 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,843 even if it does not contain any `.py` files. 2025-10-15T14:23:53,843 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,844 directory, all directories are treated like packages. 2025-10-15T14:23:53,844 ******************************************************************************** 2025-10-15T14:23:53,845 !! 2025-10-15T14:23:53,846 check.warn(importable) 2025-10-15T14:23:53,846 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.segmentation.models' is absent from the `packages` configuration. 2025-10-15T14:23:53,847 !! 2025-10-15T14:23:53,848 ******************************************************************************** 2025-10-15T14:23:53,848 ############################ 2025-10-15T14:23:53,849 # Package would be ignored # 2025-10-15T14:23:53,850 ############################ 2025-10-15T14:23:53,850 Python recognizes 'fibsem.segmentation.models' as an importable package[^1], 2025-10-15T14:23:53,851 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,852 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,852 package, please make sure that 'fibsem.segmentation.models' is explicitly added 2025-10-15T14:23:53,852 to the `packages` configuration field. 2025-10-15T14:23:53,853 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,854 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,854 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,855 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,856 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,857 If you don't want 'fibsem.segmentation.models' to be distributed and are 2025-10-15T14:23:53,857 already explicitly excluding 'fibsem.segmentation.models' via 2025-10-15T14:23:53,857 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,858 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,858 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,859 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,860 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,861 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,862 even if it does not contain any `.py` files. 2025-10-15T14:23:53,862 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,863 directory, all directories are treated like packages. 2025-10-15T14:23:53,863 ******************************************************************************** 2025-10-15T14:23:53,864 !! 2025-10-15T14:23:53,865 check.warn(importable) 2025-10-15T14:23:53,865 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.tools' is absent from the `packages` configuration. 2025-10-15T14:23:53,866 !! 2025-10-15T14:23:53,867 ******************************************************************************** 2025-10-15T14:23:53,867 ############################ 2025-10-15T14:23:53,868 # Package would be ignored # 2025-10-15T14:23:53,868 ############################ 2025-10-15T14:23:53,869 Python recognizes 'fibsem.tools' as an importable package[^1], 2025-10-15T14:23:53,869 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,870 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,871 package, please make sure that 'fibsem.tools' is explicitly added 2025-10-15T14:23:53,871 to the `packages` configuration field. 2025-10-15T14:23:53,872 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,873 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,873 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,874 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,876 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,877 If you don't want 'fibsem.tools' to be distributed and are 2025-10-15T14:23:53,878 already explicitly excluding 'fibsem.tools' via 2025-10-15T14:23:53,878 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,879 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,879 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,880 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,881 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,882 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,883 even if it does not contain any `.py` files. 2025-10-15T14:23:53,883 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,884 directory, all directories are treated like packages. 2025-10-15T14:23:53,884 ******************************************************************************** 2025-10-15T14:23:53,885 !! 2025-10-15T14:23:53,885 check.warn(importable) 2025-10-15T14:23:53,886 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.ui' is absent from the `packages` configuration. 2025-10-15T14:23:53,886 !! 2025-10-15T14:23:53,887 ******************************************************************************** 2025-10-15T14:23:53,888 ############################ 2025-10-15T14:23:53,888 # Package would be ignored # 2025-10-15T14:23:53,889 ############################ 2025-10-15T14:23:53,889 Python recognizes 'fibsem.ui' as an importable package[^1], 2025-10-15T14:23:53,890 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,891 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,891 package, please make sure that 'fibsem.ui' is explicitly added 2025-10-15T14:23:53,892 to the `packages` configuration field. 2025-10-15T14:23:53,893 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,893 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,894 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,895 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,896 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,897 If you don't want 'fibsem.ui' to be distributed and are 2025-10-15T14:23:53,897 already explicitly excluding 'fibsem.ui' via 2025-10-15T14:23:53,898 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,898 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,899 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,900 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,901 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,902 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,903 even if it does not contain any `.py` files. 2025-10-15T14:23:53,903 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,904 directory, all directories are treated like packages. 2025-10-15T14:23:53,904 ******************************************************************************** 2025-10-15T14:23:53,906 !! 2025-10-15T14:23:53,906 check.warn(importable) 2025-10-15T14:23:53,907 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.ui.napari' is absent from the `packages` configuration. 2025-10-15T14:23:53,907 !! 2025-10-15T14:23:53,909 ******************************************************************************** 2025-10-15T14:23:53,910 ############################ 2025-10-15T14:23:53,914 # Package would be ignored # 2025-10-15T14:23:53,917 ############################ 2025-10-15T14:23:53,922 Python recognizes 'fibsem.ui.napari' as an importable package[^1], 2025-10-15T14:23:53,923 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,927 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,929 package, please make sure that 'fibsem.ui.napari' is explicitly added 2025-10-15T14:23:53,931 to the `packages` configuration field. 2025-10-15T14:23:53,938 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,939 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,943 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,950 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,957 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,963 If you don't want 'fibsem.ui.napari' to be distributed and are 2025-10-15T14:23:53,965 already explicitly excluding 'fibsem.ui.napari' via 2025-10-15T14:23:53,966 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:53,967 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:53,968 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:53,969 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:53,970 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:53,972 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:53,972 even if it does not contain any `.py` files. 2025-10-15T14:23:53,973 On the other hand, currently there is no concept of package data 2025-10-15T14:23:53,973 directory, all directories are treated like packages. 2025-10-15T14:23:53,974 ******************************************************************************** 2025-10-15T14:23:53,975 !! 2025-10-15T14:23:53,975 check.warn(importable) 2025-10-15T14:23:53,976 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.ui.qtdesigner_files' is absent from the `packages` configuration. 2025-10-15T14:23:53,977 !! 2025-10-15T14:23:53,978 ******************************************************************************** 2025-10-15T14:23:53,978 ############################ 2025-10-15T14:23:53,979 # Package would be ignored # 2025-10-15T14:23:53,979 ############################ 2025-10-15T14:23:53,980 Python recognizes 'fibsem.ui.qtdesigner_files' as an importable package[^1], 2025-10-15T14:23:53,980 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:53,982 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:53,982 package, please make sure that 'fibsem.ui.qtdesigner_files' is explicitly added 2025-10-15T14:23:53,983 to the `packages` configuration field. 2025-10-15T14:23:53,984 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:53,985 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:53,985 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:53,986 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:53,988 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:53,989 If you don't want 'fibsem.ui.qtdesigner_files' to be distributed and are 2025-10-15T14:23:53,997 already explicitly excluding 'fibsem.ui.qtdesigner_files' via 2025-10-15T14:23:54,004 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:54,014 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:54,020 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:54,021 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:54,023 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:54,035 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:54,043 even if it does not contain any `.py` files. 2025-10-15T14:23:54,049 On the other hand, currently there is no concept of package data 2025-10-15T14:23:54,050 directory, all directories are treated like packages. 2025-10-15T14:23:54,050 ******************************************************************************** 2025-10-15T14:23:54,052 !! 2025-10-15T14:23:54,063 check.warn(importable) 2025-10-15T14:23:54,080 /tmp/pip-build-env-a9ht2hx7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'fibsem.util' is absent from the `packages` configuration. 2025-10-15T14:23:54,086 !! 2025-10-15T14:23:54,092 ******************************************************************************** 2025-10-15T14:23:54,107 ############################ 2025-10-15T14:23:54,108 # Package would be ignored # 2025-10-15T14:23:54,108 ############################ 2025-10-15T14:23:54,109 Python recognizes 'fibsem.util' as an importable package[^1], 2025-10-15T14:23:54,109 but it is absent from setuptools' `packages` configuration. 2025-10-15T14:23:54,110 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T14:23:54,111 package, please make sure that 'fibsem.util' is explicitly added 2025-10-15T14:23:54,112 to the `packages` configuration field. 2025-10-15T14:23:54,116 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T14:23:54,116 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T14:23:54,117 instead of `find_packages(...)`/`find:`). 2025-10-15T14:23:54,122 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T14:23:54,125 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T14:23:54,128 If you don't want 'fibsem.util' to be distributed and are 2025-10-15T14:23:54,129 already explicitly excluding 'fibsem.util' via 2025-10-15T14:23:54,130 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T14:23:54,131 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T14:23:54,132 combination with a more fine grained `package-data` configuration. 2025-10-15T14:23:54,134 You can read more about "package data files" on setuptools documentation page: 2025-10-15T14:23:54,136 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T14:23:54,152 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T14:23:54,153 even if it does not contain any `.py` files. 2025-10-15T14:23:54,155 On the other hand, currently there is no concept of package data 2025-10-15T14:23:54,156 directory, all directories are treated like packages. 2025-10-15T14:23:54,157 ******************************************************************************** 2025-10-15T14:23:54,163 !! 2025-10-15T14:23:54,166 check.warn(importable) 2025-10-15T14:23:54,167 creating build/lib/fibsem/chat 2025-10-15T14:23:54,167 copying fibsem/chat/.gitignore -> build/lib/fibsem/chat 2025-10-15T14:23:54,170 copying fibsem/chat/main.py -> build/lib/fibsem/chat 2025-10-15T14:23:54,175 copying fibsem/chat/requirements.txt -> build/lib/fibsem/chat 2025-10-15T14:23:54,178 creating build/lib/fibsem/config 2025-10-15T14:23:54,179 copying fibsem/config/deposition.dbp -> build/lib/fibsem/config 2025-10-15T14:23:54,179 copying fibsem/config/microscope-configuration.yaml -> build/lib/fibsem/config 2025-10-15T14:23:54,180 copying fibsem/config/odemis-configuration.yaml -> build/lib/fibsem/config 2025-10-15T14:23:54,180 copying fibsem/config/positions.yaml -> build/lib/fibsem/config 2025-10-15T14:23:54,181 copying fibsem/config/protocol.yaml -> build/lib/fibsem/config 2025-10-15T14:23:54,181 copying fibsem/config/tescan_manipulator.yaml -> build/lib/fibsem/config 2025-10-15T14:23:54,181 copying fibsem/config/tfs-aquilos2-configuration.yaml -> build/lib/fibsem/config 2025-10-15T14:23:54,182 copying fibsem/config/tfs-arctis-configuration.yaml -> build/lib/fibsem/config 2025-10-15T14:23:54,182 copying fibsem/config/tfs-hydra-configuration.yaml -> build/lib/fibsem/config 2025-10-15T14:23:54,183 creating build/lib/fibsem/db 2025-10-15T14:23:54,183 copying fibsem/db/app.py -> build/lib/fibsem/db 2025-10-15T14:23:54,184 copying fibsem/db/config.yaml -> build/lib/fibsem/db 2025-10-15T14:23:54,184 copying fibsem/db/notebook.ipynb -> build/lib/fibsem/db 2025-10-15T14:23:54,185 copying fibsem/db/util.py -> build/lib/fibsem/db 2025-10-15T14:23:54,185 creating build/lib/fibsem/db/v2 2025-10-15T14:23:54,186 copying fibsem/db/v2/app.py -> build/lib/fibsem/db/v2 2025-10-15T14:23:54,186 copying fibsem/db/v2/models.py -> build/lib/fibsem/db/v2 2025-10-15T14:23:54,187 copying fibsem/db/v2/notebook.ipynb -> build/lib/fibsem/db/v2 2025-10-15T14:23:54,188 copying fibsem/db/v2/util.py -> build/lib/fibsem/db/v2 2025-10-15T14:23:54,188 creating build/lib/fibsem/db/v3 2025-10-15T14:23:54,189 copying fibsem/db/v3/app.py -> build/lib/fibsem/db/v3 2025-10-15T14:23:54,190 copying fibsem/db/v3/models.py -> build/lib/fibsem/db/v3 2025-10-15T14:23:54,191 copying fibsem/db/v3/notebook.ipynb -> build/lib/fibsem/db/v3 2025-10-15T14:23:54,194 copying fibsem/db/v3/util.py -> build/lib/fibsem/db/v3 2025-10-15T14:23:54,197 creating build/lib/fibsem/detection 2025-10-15T14:23:54,204 copying fibsem/detection/__init__.py -> build/lib/fibsem/detection 2025-10-15T14:23:54,206 copying fibsem/detection/config-autolamella-liftout-hf-mega.yaml -> build/lib/fibsem/detection 2025-10-15T14:23:54,207 copying fibsem/detection/config-autolamella-liftout.yaml -> build/lib/fibsem/detection 2025-10-15T14:23:54,209 copying fibsem/detection/config-autolamella-serial-liftout-hf-mega.yaml -> build/lib/fibsem/detection 2025-10-15T14:23:54,210 copying fibsem/detection/config-autolamella-serial-liftout.yaml -> build/lib/fibsem/detection 2025-10-15T14:23:54,212 copying fibsem/detection/config-autolamella-waffle-v2-hf-mega.yaml -> build/lib/fibsem/detection 2025-10-15T14:23:54,212 copying fibsem/detection/config-autolamella-waffle-v2.yaml -> build/lib/fibsem/detection 2025-10-15T14:23:54,214 copying fibsem/detection/config-autolamella-waffle.yml -> build/lib/fibsem/detection 2025-10-15T14:23:54,219 copying fibsem/detection/config-autoliftout-dm-embryo.yml -> build/lib/fibsem/detection 2025-10-15T14:23:54,220 copying fibsem/detection/detection.py -> build/lib/fibsem/detection 2025-10-15T14:23:54,222 copying fibsem/detection/evaluation.py -> build/lib/fibsem/detection 2025-10-15T14:23:54,225 copying fibsem/detection/run_evaluation.py -> build/lib/fibsem/detection 2025-10-15T14:23:54,225 copying fibsem/detection/test_image.tif -> build/lib/fibsem/detection 2025-10-15T14:23:54,226 copying fibsem/detection/test_image_2.tif -> build/lib/fibsem/detection 2025-10-15T14:23:54,229 copying fibsem/detection/utils.py -> build/lib/fibsem/detection 2025-10-15T14:23:54,240 creating build/lib/fibsem/detection/test_images 2025-10-15T14:23:54,241 copying fibsem/detection/test_images/test_needle_mask.tif -> build/lib/fibsem/detection/test_images 2025-10-15T14:23:54,242 copying fibsem/detection/test_images/test_needle_mask2.tif -> build/lib/fibsem/detection/test_images 2025-10-15T14:23:54,244 copying fibsem/detection/test_images/test_needle_mask3.tif -> build/lib/fibsem/detection/test_images 2025-10-15T14:23:54,249 creating build/lib/fibsem/detection/test_images/serial 2025-10-15T14:23:54,252 copying fibsem/detection/test_images/serial/serial_liftout_mask_00.tif -> build/lib/fibsem/detection/test_images/serial 2025-10-15T14:23:54,253 copying fibsem/detection/test_images/serial/serial_liftout_mask_01.tif -> build/lib/fibsem/detection/test_images/serial 2025-10-15T14:23:54,253 copying fibsem/detection/test_images/serial/serial_liftout_mask_02.tif -> build/lib/fibsem/detection/test_images/serial 2025-10-15T14:23:54,254 copying fibsem/detection/test_images/serial/serial_liftout_mask_03.tif -> build/lib/fibsem/detection/test_images/serial 2025-10-15T14:23:54,254 copying fibsem/detection/test_images/serial/serial_liftout_mask_04.tif -> build/lib/fibsem/detection/test_images/serial 2025-10-15T14:23:54,255 copying fibsem/detection/test_images/serial/serial_liftout_mask_05.tif -> build/lib/fibsem/detection/test_images/serial 2025-10-15T14:23:54,256 copying fibsem/detection/test_images/serial/serial_liftout_mask_06.tif -> build/lib/fibsem/detection/test_images/serial 2025-10-15T14:23:54,265 copying fibsem/detection/test_images/serial/serial_liftout_mask_07.tif -> build/lib/fibsem/detection/test_images/serial 2025-10-15T14:23:54,266 creating build/lib/fibsem/imaging 2025-10-15T14:23:54,267 copying fibsem/imaging/.gitkeep -> build/lib/fibsem/imaging 2025-10-15T14:23:54,269 copying fibsem/imaging/__init__.py -> build/lib/fibsem/imaging 2025-10-15T14:23:54,271 copying fibsem/imaging/autogamma.py -> build/lib/fibsem/imaging 2025-10-15T14:23:54,273 copying fibsem/imaging/masks.py -> build/lib/fibsem/imaging 2025-10-15T14:23:54,275 copying fibsem/imaging/spot.py -> build/lib/fibsem/imaging 2025-10-15T14:23:54,277 copying fibsem/imaging/tiled.py -> build/lib/fibsem/imaging 2025-10-15T14:23:54,278 copying fibsem/imaging/utils.py -> build/lib/fibsem/imaging 2025-10-15T14:23:54,279 creating build/lib/fibsem/microscopes 2025-10-15T14:23:54,279 copying fibsem/microscopes/odemis_microscope.py -> build/lib/fibsem/microscopes 2025-10-15T14:23:54,280 creating build/lib/fibsem/milling 2025-10-15T14:23:54,281 copying fibsem/milling/__init__.py -> build/lib/fibsem/milling 2025-10-15T14:23:54,281 copying fibsem/milling/base.py -> build/lib/fibsem/milling 2025-10-15T14:23:54,282 copying fibsem/milling/config.py -> build/lib/fibsem/milling 2025-10-15T14:23:54,282 copying fibsem/milling/core.py -> build/lib/fibsem/milling 2025-10-15T14:23:54,283 copying fibsem/milling/milling_notebook.ipynb -> build/lib/fibsem/milling 2025-10-15T14:23:54,283 creating build/lib/fibsem/milling/patterning 2025-10-15T14:23:54,284 copying fibsem/milling/patterning/patterns.py -> build/lib/fibsem/milling/patterning 2025-10-15T14:23:54,284 copying fibsem/milling/patterning/patterns2.py -> build/lib/fibsem/milling/patterning 2025-10-15T14:23:54,285 copying fibsem/milling/patterning/plotting.py -> build/lib/fibsem/milling/patterning 2025-10-15T14:23:54,286 creating build/lib/fibsem/milling/strategy 2025-10-15T14:23:54,286 copying fibsem/milling/strategy/__init__.py -> build/lib/fibsem/milling/strategy 2025-10-15T14:23:54,287 copying fibsem/milling/strategy/overtilt.py -> build/lib/fibsem/milling/strategy 2025-10-15T14:23:54,287 copying fibsem/milling/strategy/standard.py -> build/lib/fibsem/milling/strategy 2025-10-15T14:23:54,288 creating build/lib/fibsem/segmentation 2025-10-15T14:23:54,289 copying fibsem/segmentation/README.md -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,289 copying fibsem/segmentation/__init__.py -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,290 copying fibsem/segmentation/_nnunet.py -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,290 copying fibsem/segmentation/adaptive_model.py -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,290 copying fibsem/segmentation/augmentation.ipynb -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,291 copying fibsem/segmentation/config-autolamella-mega-v4-xl.yml -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,292 copying fibsem/segmentation/config-autolamella-mega-v4.yml -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,292 copying fibsem/segmentation/config-autolamella-mega-v5.yml -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,292 copying fibsem/segmentation/config-autolamella-waffle4.yml -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,293 copying fibsem/segmentation/config.py -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,293 copying fibsem/segmentation/config.yml -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,294 copying fibsem/segmentation/dataset.py -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,295 copying fibsem/segmentation/example.ipynb -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,295 copying fibsem/segmentation/hf_segmentation_model.py -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,296 copying fibsem/segmentation/huggingface.ipynb -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,296 copying fibsem/segmentation/inference.py -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,297 copying fibsem/segmentation/model.py -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,297 copying fibsem/segmentation/nnunet_model.py -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,298 copying fibsem/segmentation/onnx_model.py -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,298 copying fibsem/segmentation/requirements.txt -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,299 copying fibsem/segmentation/sam_model.py -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,299 copying fibsem/segmentation/segmentation_config.yaml -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,300 copying fibsem/segmentation/test_image.tif -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,300 copying fibsem/segmentation/train.py -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,301 copying fibsem/segmentation/utils.py -> build/lib/fibsem/segmentation 2025-10-15T14:23:54,301 creating build/lib/fibsem/segmentation/docs 2025-10-15T14:23:54,302 copying fibsem/segmentation/docs/example_napari.png -> build/lib/fibsem/segmentation/docs 2025-10-15T14:23:54,302 creating build/lib/fibsem/segmentation/docs/imgs/combined 2025-10-15T14:23:54,303 copying fibsem/segmentation/docs/imgs/combined/combined.jpg -> build/lib/fibsem/segmentation/docs/imgs/combined 2025-10-15T14:23:54,303 creating build/lib/fibsem/segmentation/docs/imgs/labelled 2025-10-15T14:23:54,304 copying fibsem/segmentation/docs/imgs/labelled/label.tif -> build/lib/fibsem/segmentation/docs/imgs/labelled 2025-10-15T14:23:54,304 creating build/lib/fibsem/segmentation/docs/imgs/raw 2025-10-15T14:23:54,305 copying fibsem/segmentation/docs/imgs/raw/image.tif -> build/lib/fibsem/segmentation/docs/imgs/raw 2025-10-15T14:23:54,305 creating build/lib/fibsem/segmentation/models 2025-10-15T14:23:54,306 copying fibsem/segmentation/models/.gitkeep -> build/lib/fibsem/segmentation/models 2025-10-15T14:23:54,306 creating build/lib/fibsem/tools 2025-10-15T14:23:54,307 copying fibsem/tools/_parser.py -> build/lib/fibsem/tools 2025-10-15T14:23:54,307 copying fibsem/tools/run_manipulator_calibration.py -> build/lib/fibsem/tools 2025-10-15T14:23:54,308 copying fibsem/tools/run_split_dataset.py -> build/lib/fibsem/tools 2025-10-15T14:23:54,309 copying fibsem/tools/telemetry.py -> build/lib/fibsem/tools 2025-10-15T14:23:54,309 creating build/lib/fibsem/ui 2025-10-15T14:23:54,310 copying fibsem/ui/.gitkeep -> build/lib/fibsem/ui 2025-10-15T14:23:54,310 copying fibsem/ui/FibsemAlignmentWidget.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,311 copying fibsem/ui/FibsemCryoDepositionWidget.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,311 copying fibsem/ui/FibsemCryoDepositionWidget_qt.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,312 copying fibsem/ui/FibsemEmbeddedDetectionWidget.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,312 copying fibsem/ui/FibsemFeatureLabellingUI.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,314 copying fibsem/ui/FibsemGISWidget.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,316 copying fibsem/ui/FibsemImageSettingsWidget.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,319 copying fibsem/ui/FibsemImageViewer.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,322 copying fibsem/ui/FibsemLabellingUI.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,324 copying fibsem/ui/FibsemManipulatorWidget.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,327 copying fibsem/ui/FibsemMicroscopeConfigurationWidget.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,329 copying fibsem/ui/FibsemMicroscopeConfigurationWidgetBase.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,332 copying fibsem/ui/FibsemMillingWidget.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,335 copying fibsem/ui/FibsemMinimapWidget.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,338 copying fibsem/ui/FibsemModelTrainingWidget.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,340 copying fibsem/ui/FibsemMovementWidget.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,343 copying fibsem/ui/FibsemMultiChemWidget.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,345 copying fibsem/ui/FibsemPositionsWidget.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,348 copying fibsem/ui/FibsemSegmentationModelWidget.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,350 copying fibsem/ui/FibsemSystemSetupWidget.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,353 copying fibsem/ui/FibsemUI.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,355 copying fibsem/ui/__init__.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,357 copying fibsem/ui/stylesheets.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,360 copying fibsem/ui/utils.py -> build/lib/fibsem/ui 2025-10-15T14:23:54,362 creating build/lib/fibsem/ui/napari 2025-10-15T14:23:54,363 copying fibsem/ui/napari/patterns.py -> build/lib/fibsem/ui/napari 2025-10-15T14:23:54,366 copying fibsem/ui/napari/properties.py -> build/lib/fibsem/ui/napari 2025-10-15T14:23:54,368 copying fibsem/ui/napari/utilities.py -> build/lib/fibsem/ui/napari 2025-10-15T14:23:54,371 creating build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,372 copying fibsem/ui/qtdesigner_files/CurrentAlignmentWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,374 copying fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,377 copying fibsem/ui/qtdesigner_files/FibsemEmbeddedDetectionWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,379 copying fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,381 copying fibsem/ui/qtdesigner_files/FibsemGISWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,384 copying fibsem/ui/qtdesigner_files/FibsemLabellingUI.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,386 copying fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,389 copying fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,391 copying fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidgetBase.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,394 copying fibsem/ui/qtdesigner_files/FibsemMillingWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,397 copying fibsem/ui/qtdesigner_files/FibsemMinimapWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,400 copying fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,403 copying fibsem/ui/qtdesigner_files/FibsemMovementWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,405 copying fibsem/ui/qtdesigner_files/FibsemMultiChemWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,408 copying fibsem/ui/qtdesigner_files/FibsemPositionsWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,410 copying fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,412 copying fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,414 copying fibsem/ui/qtdesigner_files/FibsemUI.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,416 copying fibsem/ui/qtdesigner_files/ImageSettingsWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,419 copying fibsem/ui/qtdesigner_files/detection_dialog.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,421 copying fibsem/ui/qtdesigner_files/image_viewer.py -> build/lib/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,424 creating build/lib/fibsem/util 2025-10-15T14:23:54,425 copying fibsem/util/__init__.py -> build/lib/fibsem/util 2025-10-15T14:23:54,427 copying fibsem/util/filename.py -> build/lib/fibsem/util 2025-10-15T14:23:54,442 installing to build/bdist.linux-armv7l/wheel 2025-10-15T14:23:54,443 running install 2025-10-15T14:23:54,466 running install_lib 2025-10-15T14:23:54,473 creating build/bdist.linux-armv7l/wheel 2025-10-15T14:23:54,476 creating build/bdist.linux-armv7l/wheel/fibsem 2025-10-15T14:23:54,477 copying build/lib/fibsem/alignment.py -> build/bdist.linux-armv7l/wheel/./fibsem 2025-10-15T14:23:54,480 copying build/lib/fibsem/conversions.py -> build/bdist.linux-armv7l/wheel/./fibsem 2025-10-15T14:23:54,482 copying build/lib/fibsem/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem 2025-10-15T14:23:54,484 creating build/bdist.linux-armv7l/wheel/fibsem/config 2025-10-15T14:23:54,485 copying build/lib/fibsem/config/tfs-hydra-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2025-10-15T14:23:54,487 copying build/lib/fibsem/config/positions.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2025-10-15T14:23:54,489 copying build/lib/fibsem/config/microscope-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2025-10-15T14:23:54,491 copying build/lib/fibsem/config/tfs-aquilos2-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2025-10-15T14:23:54,493 copying build/lib/fibsem/config/tescan_manipulator.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2025-10-15T14:23:54,495 copying build/lib/fibsem/config/tfs-arctis-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2025-10-15T14:23:54,497 copying build/lib/fibsem/config/deposition.dbp -> build/bdist.linux-armv7l/wheel/./fibsem/config 2025-10-15T14:23:54,499 copying build/lib/fibsem/config/odemis-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2025-10-15T14:23:54,501 copying build/lib/fibsem/config/protocol.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2025-10-15T14:23:54,503 copying build/lib/fibsem/movement.py -> build/bdist.linux-armv7l/wheel/./fibsem 2025-10-15T14:23:54,504 copying build/lib/fibsem/calibration.py -> build/bdist.linux-armv7l/wheel/./fibsem 2025-10-15T14:23:54,507 creating build/bdist.linux-armv7l/wheel/fibsem/util 2025-10-15T14:23:54,508 copying build/lib/fibsem/util/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/util 2025-10-15T14:23:54,510 copying build/lib/fibsem/util/filename.py -> build/bdist.linux-armv7l/wheel/./fibsem/util 2025-10-15T14:23:54,512 copying build/lib/fibsem/microscope.py -> build/bdist.linux-armv7l/wheel/./fibsem 2025-10-15T14:23:54,517 copying build/lib/fibsem/acquire.py -> build/bdist.linux-armv7l/wheel/./fibsem 2025-10-15T14:23:54,520 copying build/lib/fibsem/gis.py -> build/bdist.linux-armv7l/wheel/./fibsem 2025-10-15T14:23:54,522 creating build/bdist.linux-armv7l/wheel/fibsem/detection 2025-10-15T14:23:54,523 copying build/lib/fibsem/detection/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2025-10-15T14:23:54,530 copying build/lib/fibsem/detection/test_image_2.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2025-10-15T14:23:54,556 copying build/lib/fibsem/detection/config-autolamella-serial-liftout-hf-mega.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2025-10-15T14:23:54,558 copying build/lib/fibsem/detection/detection.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2025-10-15T14:23:54,560 copying build/lib/fibsem/detection/config-autoliftout-dm-embryo.yml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2025-10-15T14:23:54,562 copying build/lib/fibsem/detection/config-autolamella-liftout.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2025-10-15T14:23:54,564 creating build/bdist.linux-armv7l/wheel/fibsem/detection/test_images 2025-10-15T14:23:54,565 creating build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2025-10-15T14:23:54,567 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_00.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2025-10-15T14:23:54,569 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_03.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2025-10-15T14:23:54,571 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_04.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2025-10-15T14:23:54,574 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_06.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2025-10-15T14:23:54,576 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_02.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2025-10-15T14:23:54,579 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_05.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2025-10-15T14:23:54,581 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_01.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2025-10-15T14:23:54,583 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_07.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2025-10-15T14:23:54,586 copying build/lib/fibsem/detection/test_images/test_needle_mask2.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images 2025-10-15T14:23:54,588 copying build/lib/fibsem/detection/test_images/test_needle_mask3.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images 2025-10-15T14:23:54,590 copying build/lib/fibsem/detection/test_images/test_needle_mask.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images 2025-10-15T14:23:54,610 copying build/lib/fibsem/detection/test_image.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2025-10-15T14:23:54,634 copying build/lib/fibsem/detection/config-autolamella-waffle-v2-hf-mega.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2025-10-15T14:23:54,636 copying build/lib/fibsem/detection/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2025-10-15T14:23:54,638 copying build/lib/fibsem/detection/run_evaluation.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2025-10-15T14:23:54,640 copying build/lib/fibsem/detection/config-autolamella-liftout-hf-mega.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2025-10-15T14:23:54,642 copying build/lib/fibsem/detection/config-autolamella-serial-liftout.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2025-10-15T14:23:54,643 copying build/lib/fibsem/detection/config-autolamella-waffle.yml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2025-10-15T14:23:54,645 copying build/lib/fibsem/detection/config-autolamella-waffle-v2.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2025-10-15T14:23:54,647 copying build/lib/fibsem/detection/evaluation.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2025-10-15T14:23:54,650 creating build/bdist.linux-armv7l/wheel/fibsem/milling 2025-10-15T14:23:54,651 copying build/lib/fibsem/milling/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2025-10-15T14:23:54,653 creating build/bdist.linux-armv7l/wheel/fibsem/milling/patterning 2025-10-15T14:23:54,654 copying build/lib/fibsem/milling/patterning/patterns.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2025-10-15T14:23:54,657 copying build/lib/fibsem/milling/patterning/plotting.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2025-10-15T14:23:54,659 copying build/lib/fibsem/milling/patterning/patterns2.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2025-10-15T14:23:54,661 copying build/lib/fibsem/milling/base.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2025-10-15T14:23:54,663 copying build/lib/fibsem/milling/config.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2025-10-15T14:23:54,665 copying build/lib/fibsem/milling/core.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2025-10-15T14:23:54,668 creating build/bdist.linux-armv7l/wheel/fibsem/milling/strategy 2025-10-15T14:23:54,669 copying build/lib/fibsem/milling/strategy/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/strategy 2025-10-15T14:23:54,670 copying build/lib/fibsem/milling/strategy/overtilt.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/strategy 2025-10-15T14:23:54,673 copying build/lib/fibsem/milling/strategy/standard.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/strategy 2025-10-15T14:23:54,674 copying build/lib/fibsem/milling/milling_notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2025-10-15T14:23:54,677 creating build/bdist.linux-armv7l/wheel/fibsem/tools 2025-10-15T14:23:54,678 copying build/lib/fibsem/tools/telemetry.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2025-10-15T14:23:54,681 copying build/lib/fibsem/tools/run_split_dataset.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2025-10-15T14:23:54,683 copying build/lib/fibsem/tools/_parser.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2025-10-15T14:23:54,685 copying build/lib/fibsem/tools/run_manipulator_calibration.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2025-10-15T14:23:54,687 copying build/lib/fibsem/configuration.py -> build/bdist.linux-armv7l/wheel/./fibsem 2025-10-15T14:23:54,689 copying build/lib/fibsem/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem 2025-10-15T14:23:54,691 copying build/lib/fibsem/constants.py -> build/bdist.linux-armv7l/wheel/./fibsem 2025-10-15T14:23:54,694 creating build/bdist.linux-armv7l/wheel/fibsem/ui 2025-10-15T14:23:54,695 copying build/lib/fibsem/ui/FibsemFeatureLabellingUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,698 copying build/lib/fibsem/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,699 copying build/lib/fibsem/ui/FibsemLabellingUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,702 creating build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,703 copying build/lib/fibsem/ui/qtdesigner_files/CurrentAlignmentWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,706 copying build/lib/fibsem/ui/qtdesigner_files/ImageSettingsWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,708 copying build/lib/fibsem/ui/qtdesigner_files/FibsemLabellingUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,711 copying build/lib/fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,713 copying build/lib/fibsem/ui/qtdesigner_files/image_viewer.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,716 copying build/lib/fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,718 copying build/lib/fibsem/ui/qtdesigner_files/FibsemGISWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,720 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMultiChemWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,722 copying build/lib/fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,725 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMovementWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,727 copying build/lib/fibsem/ui/qtdesigner_files/FibsemUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,729 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMillingWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,731 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMinimapWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,734 copying build/lib/fibsem/ui/qtdesigner_files/detection_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,736 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidgetBase.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,739 copying build/lib/fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,741 copying build/lib/fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,743 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,745 copying build/lib/fibsem/ui/qtdesigner_files/FibsemEmbeddedDetectionWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,747 copying build/lib/fibsem/ui/qtdesigner_files/FibsemPositionsWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,749 copying build/lib/fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2025-10-15T14:23:54,751 copying build/lib/fibsem/ui/FibsemSystemSetupWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,753 copying build/lib/fibsem/ui/FibsemCryoDepositionWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,755 copying build/lib/fibsem/ui/FibsemGISWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,757 copying build/lib/fibsem/ui/FibsemMultiChemWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,759 copying build/lib/fibsem/ui/FibsemModelTrainingWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,761 creating build/bdist.linux-armv7l/wheel/fibsem/ui/napari 2025-10-15T14:23:54,762 copying build/lib/fibsem/ui/napari/patterns.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/napari 2025-10-15T14:23:54,765 copying build/lib/fibsem/ui/napari/properties.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/napari 2025-10-15T14:23:54,767 copying build/lib/fibsem/ui/napari/utilities.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/napari 2025-10-15T14:23:54,769 copying build/lib/fibsem/ui/FibsemMovementWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,772 copying build/lib/fibsem/ui/FibsemUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,774 copying build/lib/fibsem/ui/FibsemMillingWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,777 copying build/lib/fibsem/ui/FibsemMinimapWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,780 copying build/lib/fibsem/ui/FibsemMicroscopeConfigurationWidgetBase.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,782 copying build/lib/fibsem/ui/FibsemImageSettingsWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,785 copying build/lib/fibsem/ui/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,787 copying build/lib/fibsem/ui/FibsemManipulatorWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,789 copying build/lib/fibsem/ui/FibsemAlignmentWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,791 copying build/lib/fibsem/ui/FibsemCryoDepositionWidget_qt.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,793 copying build/lib/fibsem/ui/FibsemMicroscopeConfigurationWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,795 copying build/lib/fibsem/ui/FibsemEmbeddedDetectionWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,797 copying build/lib/fibsem/ui/FibsemPositionsWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,799 copying build/lib/fibsem/ui/FibsemSegmentationModelWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,801 copying build/lib/fibsem/ui/stylesheets.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,802 copying build/lib/fibsem/ui/FibsemImageViewer.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,805 copying build/lib/fibsem/ui/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2025-10-15T14:23:54,806 creating build/bdist.linux-armv7l/wheel/fibsem/chat 2025-10-15T14:23:54,807 copying build/lib/fibsem/chat/requirements.txt -> build/bdist.linux-armv7l/wheel/./fibsem/chat 2025-10-15T14:23:54,809 copying build/lib/fibsem/chat/main.py -> build/bdist.linux-armv7l/wheel/./fibsem/chat 2025-10-15T14:23:54,811 copying build/lib/fibsem/chat/.gitignore -> build/bdist.linux-armv7l/wheel/./fibsem/chat 2025-10-15T14:23:54,813 creating build/bdist.linux-armv7l/wheel/fibsem/db 2025-10-15T14:23:54,814 copying build/lib/fibsem/db/notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/db 2025-10-15T14:23:54,817 copying build/lib/fibsem/db/app.py -> build/bdist.linux-armv7l/wheel/./fibsem/db 2025-10-15T14:23:54,819 copying build/lib/fibsem/db/util.py -> build/bdist.linux-armv7l/wheel/./fibsem/db 2025-10-15T14:23:54,821 copying build/lib/fibsem/db/config.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/db 2025-10-15T14:23:54,823 creating build/bdist.linux-armv7l/wheel/fibsem/db/v2 2025-10-15T14:23:54,824 copying build/lib/fibsem/db/v2/notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/db/v2 2025-10-15T14:23:54,826 copying build/lib/fibsem/db/v2/models.py -> build/bdist.linux-armv7l/wheel/./fibsem/db/v2 2025-10-15T14:23:54,829 copying build/lib/fibsem/db/v2/app.py -> build/bdist.linux-armv7l/wheel/./fibsem/db/v2 2025-10-15T14:23:54,830 copying build/lib/fibsem/db/v2/util.py -> build/bdist.linux-armv7l/wheel/./fibsem/db/v2 2025-10-15T14:23:54,833 creating build/bdist.linux-armv7l/wheel/fibsem/db/v3 2025-10-15T14:23:54,834 copying build/lib/fibsem/db/v3/notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/db/v3 2025-10-15T14:23:54,836 copying build/lib/fibsem/db/v3/models.py -> build/bdist.linux-armv7l/wheel/./fibsem/db/v3 2025-10-15T14:23:54,838 copying build/lib/fibsem/db/v3/app.py -> build/bdist.linux-armv7l/wheel/./fibsem/db/v3 2025-10-15T14:23:54,840 copying build/lib/fibsem/db/v3/util.py -> build/bdist.linux-armv7l/wheel/./fibsem/db/v3 2025-10-15T14:23:54,842 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation 2025-10-15T14:23:54,843 copying build/lib/fibsem/segmentation/hf_segmentation_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:54,845 copying build/lib/fibsem/segmentation/sam_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:54,848 copying build/lib/fibsem/segmentation/train.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:54,850 copying build/lib/fibsem/segmentation/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:54,851 copying build/lib/fibsem/segmentation/onnx_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:54,854 copying build/lib/fibsem/segmentation/config-autolamella-mega-v5.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:54,855 copying build/lib/fibsem/segmentation/augmentation.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:54,858 copying build/lib/fibsem/segmentation/config-autolamella-mega-v4.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:54,859 copying build/lib/fibsem/segmentation/requirements.txt -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:54,861 copying build/lib/fibsem/segmentation/example.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:54,864 copying build/lib/fibsem/segmentation/config-autolamella-mega-v4-xl.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:54,866 copying build/lib/fibsem/segmentation/huggingface.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:54,869 copying build/lib/fibsem/segmentation/nnunet_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:54,870 copying build/lib/fibsem/segmentation/inference.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:54,873 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs 2025-10-15T14:23:54,901 copying build/lib/fibsem/segmentation/docs/example_napari.png -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs 2025-10-15T14:23:54,970 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs 2025-10-15T14:23:54,972 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/raw 2025-10-15T14:23:54,973 copying build/lib/fibsem/segmentation/docs/imgs/raw/image.tif -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs/imgs/raw 2025-10-15T14:23:55,002 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/labelled 2025-10-15T14:23:55,018 copying build/lib/fibsem/segmentation/docs/imgs/labelled/label.tif -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs/imgs/labelled 2025-10-15T14:23:55,044 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/combined 2025-10-15T14:23:55,054 copying build/lib/fibsem/segmentation/docs/imgs/combined/combined.jpg -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs/imgs/combined 2025-10-15T14:23:55,077 copying build/lib/fibsem/segmentation/dataset.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:55,085 copying build/lib/fibsem/segmentation/test_image.tif -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:55,106 copying build/lib/fibsem/segmentation/config-autolamella-waffle4.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:55,108 copying build/lib/fibsem/segmentation/model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:55,110 copying build/lib/fibsem/segmentation/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:55,112 copying build/lib/fibsem/segmentation/_nnunet.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:55,115 copying build/lib/fibsem/segmentation/README.md -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:55,117 copying build/lib/fibsem/segmentation/config.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:55,119 copying build/lib/fibsem/segmentation/segmentation_config.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:55,121 copying build/lib/fibsem/segmentation/config.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:55,123 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/models 2025-10-15T14:23:55,124 copying build/lib/fibsem/segmentation/models/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/models 2025-10-15T14:23:55,126 copying build/lib/fibsem/segmentation/adaptive_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2025-10-15T14:23:55,128 copying build/lib/fibsem/config.py -> build/bdist.linux-armv7l/wheel/./fibsem 2025-10-15T14:23:55,130 copying build/lib/fibsem/structures.py -> build/bdist.linux-armv7l/wheel/./fibsem 2025-10-15T14:23:55,133 creating build/bdist.linux-armv7l/wheel/fibsem/imaging 2025-10-15T14:23:55,134 copying build/lib/fibsem/imaging/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2025-10-15T14:23:55,136 copying build/lib/fibsem/imaging/spot.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2025-10-15T14:23:55,138 copying build/lib/fibsem/imaging/masks.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2025-10-15T14:23:55,140 copying build/lib/fibsem/imaging/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2025-10-15T14:23:55,142 copying build/lib/fibsem/imaging/tiled.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2025-10-15T14:23:55,145 copying build/lib/fibsem/imaging/autogamma.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2025-10-15T14:23:55,147 copying build/lib/fibsem/imaging/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2025-10-15T14:23:55,149 creating build/bdist.linux-armv7l/wheel/fibsem/microscopes 2025-10-15T14:23:55,150 copying build/lib/fibsem/microscopes/odemis_microscope.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2025-10-15T14:23:55,153 copying build/lib/fibsem/validation.py -> build/bdist.linux-armv7l/wheel/./fibsem 2025-10-15T14:23:55,155 running install_egg_info 2025-10-15T14:23:55,162 Copying fibsem.egg-info to build/bdist.linux-armv7l/wheel/./fibsem-0.4.0-py3.11.egg-info 2025-10-15T14:23:55,174 running install_scripts 2025-10-15T14:23:55,186 creating build/bdist.linux-armv7l/wheel/fibsem-0.4.0.dist-info/WHEEL 2025-10-15T14:23:55,189 creating '/tmp/pip-wheel-m9weqs6e/.tmp-xxluav2o/fibsem-0.4.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-10-15T14:23:55,191 adding 'fibsem/__init__.py' 2025-10-15T14:23:55,193 adding 'fibsem/acquire.py' 2025-10-15T14:23:55,197 adding 'fibsem/alignment.py' 2025-10-15T14:23:55,199 adding 'fibsem/calibration.py' 2025-10-15T14:23:55,201 adding 'fibsem/config.py' 2025-10-15T14:23:55,203 adding 'fibsem/configuration.py' 2025-10-15T14:23:55,204 adding 'fibsem/constants.py' 2025-10-15T14:23:55,205 adding 'fibsem/conversions.py' 2025-10-15T14:23:55,207 adding 'fibsem/gis.py' 2025-10-15T14:23:55,231 adding 'fibsem/microscope.py' 2025-10-15T14:23:55,234 adding 'fibsem/movement.py' 2025-10-15T14:23:55,242 adding 'fibsem/structures.py' 2025-10-15T14:23:55,245 adding 'fibsem/utils.py' 2025-10-15T14:23:55,247 adding 'fibsem/validation.py' 2025-10-15T14:23:55,249 adding 'fibsem/chat/.gitignore' 2025-10-15T14:23:55,250 adding 'fibsem/chat/main.py' 2025-10-15T14:23:55,251 adding 'fibsem/chat/requirements.txt' 2025-10-15T14:23:55,253 adding 'fibsem/config/deposition.dbp' 2025-10-15T14:23:55,255 adding 'fibsem/config/microscope-configuration.yaml' 2025-10-15T14:23:55,256 adding 'fibsem/config/odemis-configuration.yaml' 2025-10-15T14:23:55,257 adding 'fibsem/config/positions.yaml' 2025-10-15T14:23:55,259 adding 'fibsem/config/protocol.yaml' 2025-10-15T14:23:55,260 adding 'fibsem/config/tescan_manipulator.yaml' 2025-10-15T14:23:55,261 adding 'fibsem/config/tfs-aquilos2-configuration.yaml' 2025-10-15T14:23:55,263 adding 'fibsem/config/tfs-arctis-configuration.yaml' 2025-10-15T14:23:55,265 adding 'fibsem/config/tfs-hydra-configuration.yaml' 2025-10-15T14:23:55,267 adding 'fibsem/db/app.py' 2025-10-15T14:23:55,268 adding 'fibsem/db/config.yaml' 2025-10-15T14:23:55,270 adding 'fibsem/db/notebook.ipynb' 2025-10-15T14:23:55,272 adding 'fibsem/db/util.py' 2025-10-15T14:23:55,273 adding 'fibsem/db/v2/app.py' 2025-10-15T14:23:55,275 adding 'fibsem/db/v2/models.py' 2025-10-15T14:23:55,276 adding 'fibsem/db/v2/notebook.ipynb' 2025-10-15T14:23:55,278 adding 'fibsem/db/v2/util.py' 2025-10-15T14:23:55,279 adding 'fibsem/db/v3/app.py' 2025-10-15T14:23:55,281 adding 'fibsem/db/v3/models.py' 2025-10-15T14:23:55,282 adding 'fibsem/db/v3/notebook.ipynb' 2025-10-15T14:23:55,283 adding 'fibsem/db/v3/util.py' 2025-10-15T14:23:55,285 adding 'fibsem/detection/__init__.py' 2025-10-15T14:23:55,286 adding 'fibsem/detection/config-autolamella-liftout-hf-mega.yaml' 2025-10-15T14:23:55,287 adding 'fibsem/detection/config-autolamella-liftout.yaml' 2025-10-15T14:23:55,288 adding 'fibsem/detection/config-autolamella-serial-liftout-hf-mega.yaml' 2025-10-15T14:23:55,289 adding 'fibsem/detection/config-autolamella-serial-liftout.yaml' 2025-10-15T14:23:55,291 adding 'fibsem/detection/config-autolamella-waffle-v2-hf-mega.yaml' 2025-10-15T14:23:55,292 adding 'fibsem/detection/config-autolamella-waffle-v2.yaml' 2025-10-15T14:23:55,293 adding 'fibsem/detection/config-autolamella-waffle.yml' 2025-10-15T14:23:55,294 adding 'fibsem/detection/config-autoliftout-dm-embryo.yml' 2025-10-15T14:23:55,300 adding 'fibsem/detection/detection.py' 2025-10-15T14:23:55,303 adding 'fibsem/detection/evaluation.py' 2025-10-15T14:23:55,304 adding 'fibsem/detection/run_evaluation.py' 2025-10-15T14:23:55,731 adding 'fibsem/detection/test_image.tif' 2025-10-15T14:23:56,027 adding 'fibsem/detection/test_image_2.tif' 2025-10-15T14:23:56,039 adding 'fibsem/detection/utils.py' 2025-10-15T14:23:56,041 adding 'fibsem/detection/test_images/test_needle_mask.tif' 2025-10-15T14:23:56,043 adding 'fibsem/detection/test_images/test_needle_mask2.tif' 2025-10-15T14:23:56,044 adding 'fibsem/detection/test_images/test_needle_mask3.tif' 2025-10-15T14:23:56,047 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_00.tif' 2025-10-15T14:23:56,050 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_01.tif' 2025-10-15T14:23:56,052 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_02.tif' 2025-10-15T14:23:56,055 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_03.tif' 2025-10-15T14:23:56,057 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_04.tif' 2025-10-15T14:23:56,059 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_05.tif' 2025-10-15T14:23:56,061 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_06.tif' 2025-10-15T14:23:56,064 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_07.tif' 2025-10-15T14:23:56,066 adding 'fibsem/imaging/.gitkeep' 2025-10-15T14:23:56,067 adding 'fibsem/imaging/__init__.py' 2025-10-15T14:23:56,068 adding 'fibsem/imaging/autogamma.py' 2025-10-15T14:23:56,070 adding 'fibsem/imaging/masks.py' 2025-10-15T14:23:56,071 adding 'fibsem/imaging/spot.py' 2025-10-15T14:23:56,074 adding 'fibsem/imaging/tiled.py' 2025-10-15T14:23:56,075 adding 'fibsem/imaging/utils.py' 2025-10-15T14:23:56,079 adding 'fibsem/microscopes/odemis_microscope.py' 2025-10-15T14:23:56,081 adding 'fibsem/milling/__init__.py' 2025-10-15T14:23:56,083 adding 'fibsem/milling/base.py' 2025-10-15T14:23:56,084 adding 'fibsem/milling/config.py' 2025-10-15T14:23:56,086 adding 'fibsem/milling/core.py' 2025-10-15T14:23:56,088 adding 'fibsem/milling/milling_notebook.ipynb' 2025-10-15T14:23:56,092 adding 'fibsem/milling/patterning/patterns.py' 2025-10-15T14:23:56,096 adding 'fibsem/milling/patterning/patterns2.py' 2025-10-15T14:23:56,098 adding 'fibsem/milling/patterning/plotting.py' 2025-10-15T14:23:56,100 adding 'fibsem/milling/strategy/__init__.py' 2025-10-15T14:23:56,101 adding 'fibsem/milling/strategy/overtilt.py' 2025-10-15T14:23:56,103 adding 'fibsem/milling/strategy/standard.py' 2025-10-15T14:23:56,105 adding 'fibsem/segmentation/README.md' 2025-10-15T14:23:56,106 adding 'fibsem/segmentation/__init__.py' 2025-10-15T14:23:56,108 adding 'fibsem/segmentation/_nnunet.py' 2025-10-15T14:23:56,109 adding 'fibsem/segmentation/adaptive_model.py' 2025-10-15T14:23:56,111 adding 'fibsem/segmentation/augmentation.ipynb' 2025-10-15T14:23:56,112 adding 'fibsem/segmentation/config-autolamella-mega-v4-xl.yml' 2025-10-15T14:23:56,113 adding 'fibsem/segmentation/config-autolamella-mega-v4.yml' 2025-10-15T14:23:56,114 adding 'fibsem/segmentation/config-autolamella-mega-v5.yml' 2025-10-15T14:23:56,115 adding 'fibsem/segmentation/config-autolamella-waffle4.yml' 2025-10-15T14:23:56,116 adding 'fibsem/segmentation/config.py' 2025-10-15T14:23:56,118 adding 'fibsem/segmentation/config.yml' 2025-10-15T14:23:56,119 adding 'fibsem/segmentation/dataset.py' 2025-10-15T14:23:56,130 adding 'fibsem/segmentation/example.ipynb' 2025-10-15T14:23:56,132 adding 'fibsem/segmentation/hf_segmentation_model.py' 2025-10-15T14:23:56,134 adding 'fibsem/segmentation/huggingface.ipynb' 2025-10-15T14:23:56,135 adding 'fibsem/segmentation/inference.py' 2025-10-15T14:23:56,137 adding 'fibsem/segmentation/model.py' 2025-10-15T14:23:56,138 adding 'fibsem/segmentation/nnunet_model.py' 2025-10-15T14:23:56,141 adding 'fibsem/segmentation/onnx_model.py' 2025-10-15T14:23:56,142 adding 'fibsem/segmentation/requirements.txt' 2025-10-15T14:23:56,143 adding 'fibsem/segmentation/sam_model.py' 2025-10-15T14:23:56,144 adding 'fibsem/segmentation/segmentation_config.yaml' 2025-10-15T14:23:56,293 adding 'fibsem/segmentation/test_image.tif' 2025-10-15T14:23:56,304 adding 'fibsem/segmentation/train.py' 2025-10-15T14:23:56,306 adding 'fibsem/segmentation/utils.py' 2025-10-15T14:23:56,662 adding 'fibsem/segmentation/docs/example_napari.png' 2025-10-15T14:23:56,821 adding 'fibsem/segmentation/docs/imgs/combined/combined.jpg' 2025-10-15T14:23:56,872 adding 'fibsem/segmentation/docs/imgs/labelled/label.tif' 2025-10-15T14:23:57,034 adding 'fibsem/segmentation/docs/imgs/raw/image.tif' 2025-10-15T14:23:57,044 adding 'fibsem/segmentation/models/.gitkeep' 2025-10-15T14:23:57,046 adding 'fibsem/tools/_parser.py' 2025-10-15T14:23:57,047 adding 'fibsem/tools/run_manipulator_calibration.py' 2025-10-15T14:23:57,048 adding 'fibsem/tools/run_split_dataset.py' 2025-10-15T14:23:57,050 adding 'fibsem/tools/telemetry.py' 2025-10-15T14:23:57,052 adding 'fibsem/ui/.gitkeep' 2025-10-15T14:23:57,053 adding 'fibsem/ui/FibsemAlignmentWidget.py' 2025-10-15T14:23:57,055 adding 'fibsem/ui/FibsemCryoDepositionWidget.py' 2025-10-15T14:23:57,056 adding 'fibsem/ui/FibsemCryoDepositionWidget_qt.py' 2025-10-15T14:23:57,058 adding 'fibsem/ui/FibsemEmbeddedDetectionWidget.py' 2025-10-15T14:23:57,061 adding 'fibsem/ui/FibsemFeatureLabellingUI.py' 2025-10-15T14:23:57,062 adding 'fibsem/ui/FibsemGISWidget.py' 2025-10-15T14:23:57,066 adding 'fibsem/ui/FibsemImageSettingsWidget.py' 2025-10-15T14:23:57,068 adding 'fibsem/ui/FibsemImageViewer.py' 2025-10-15T14:23:57,071 adding 'fibsem/ui/FibsemLabellingUI.py' 2025-10-15T14:23:57,073 adding 'fibsem/ui/FibsemManipulatorWidget.py' 2025-10-15T14:23:57,075 adding 'fibsem/ui/FibsemMicroscopeConfigurationWidget.py' 2025-10-15T14:23:57,077 adding 'fibsem/ui/FibsemMicroscopeConfigurationWidgetBase.py' 2025-10-15T14:23:57,083 adding 'fibsem/ui/FibsemMillingWidget.py' 2025-10-15T14:23:57,087 adding 'fibsem/ui/FibsemMinimapWidget.py' 2025-10-15T14:23:57,089 adding 'fibsem/ui/FibsemModelTrainingWidget.py' 2025-10-15T14:23:57,092 adding 'fibsem/ui/FibsemMovementWidget.py' 2025-10-15T14:23:57,093 adding 'fibsem/ui/FibsemMultiChemWidget.py' 2025-10-15T14:23:57,094 adding 'fibsem/ui/FibsemPositionsWidget.py' 2025-10-15T14:23:57,096 adding 'fibsem/ui/FibsemSegmentationModelWidget.py' 2025-10-15T14:23:57,098 adding 'fibsem/ui/FibsemSystemSetupWidget.py' 2025-10-15T14:23:57,099 adding 'fibsem/ui/FibsemUI.py' 2025-10-15T14:23:57,100 adding 'fibsem/ui/__init__.py' 2025-10-15T14:23:57,102 adding 'fibsem/ui/stylesheets.py' 2025-10-15T14:23:57,103 adding 'fibsem/ui/utils.py' 2025-10-15T14:23:57,106 adding 'fibsem/ui/napari/patterns.py' 2025-10-15T14:23:57,108 adding 'fibsem/ui/napari/properties.py' 2025-10-15T14:23:57,109 adding 'fibsem/ui/napari/utilities.py' 2025-10-15T14:23:57,111 adding 'fibsem/ui/qtdesigner_files/CurrentAlignmentWidget.py' 2025-10-15T14:23:57,112 adding 'fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py' 2025-10-15T14:23:57,113 adding 'fibsem/ui/qtdesigner_files/FibsemEmbeddedDetectionWidget.py' 2025-10-15T14:23:57,115 adding 'fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py' 2025-10-15T14:23:57,116 adding 'fibsem/ui/qtdesigner_files/FibsemGISWidget.py' 2025-10-15T14:23:57,118 adding 'fibsem/ui/qtdesigner_files/FibsemLabellingUI.py' 2025-10-15T14:23:57,119 adding 'fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py' 2025-10-15T14:23:57,120 adding 'fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py' 2025-10-15T14:23:57,123 adding 'fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidgetBase.py' 2025-10-15T14:23:57,126 adding 'fibsem/ui/qtdesigner_files/FibsemMillingWidget.py' 2025-10-15T14:23:57,128 adding 'fibsem/ui/qtdesigner_files/FibsemMinimapWidget.py' 2025-10-15T14:23:57,130 adding 'fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py' 2025-10-15T14:23:57,132 adding 'fibsem/ui/qtdesigner_files/FibsemMovementWidget.py' 2025-10-15T14:23:57,133 adding 'fibsem/ui/qtdesigner_files/FibsemMultiChemWidget.py' 2025-10-15T14:23:57,134 adding 'fibsem/ui/qtdesigner_files/FibsemPositionsWidget.py' 2025-10-15T14:23:57,135 adding 'fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py' 2025-10-15T14:23:57,137 adding 'fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py' 2025-10-15T14:23:57,138 adding 'fibsem/ui/qtdesigner_files/FibsemUI.py' 2025-10-15T14:23:57,140 adding 'fibsem/ui/qtdesigner_files/ImageSettingsWidget.py' 2025-10-15T14:23:57,142 adding 'fibsem/ui/qtdesigner_files/detection_dialog.py' 2025-10-15T14:23:57,144 adding 'fibsem/ui/qtdesigner_files/image_viewer.py' 2025-10-15T14:23:57,146 adding 'fibsem/util/__init__.py' 2025-10-15T14:23:57,147 adding 'fibsem/util/filename.py' 2025-10-15T14:23:57,149 adding 'fibsem-0.4.0.dist-info/licenses/LICENSE' 2025-10-15T14:23:57,151 adding 'fibsem-0.4.0.dist-info/METADATA' 2025-10-15T14:23:57,152 adding 'fibsem-0.4.0.dist-info/WHEEL' 2025-10-15T14:23:57,153 adding 'fibsem-0.4.0.dist-info/entry_points.txt' 2025-10-15T14:23:57,154 adding 'fibsem-0.4.0.dist-info/top_level.txt' 2025-10-15T14:23:57,157 adding 'fibsem-0.4.0.dist-info/RECORD' 2025-10-15T14:23:57,259 removing build/bdist.linux-armv7l/wheel 2025-10-15T14:23:57,409 Building wheel for fibsem (pyproject.toml): finished with status 'done' 2025-10-15T14:23:57,606 Created wheel for fibsem: filename=fibsem-0.4.0-py3-none-any.whl size=9743565 sha256=d51667917771fa9625169eb96dbaca2b235a8ab7dc5f1ad678102966817c27b7 2025-10-15T14:23:57,607 Stored in directory: /tmp/pip-ephem-wheel-cache-pnwyecle/wheels/cd/d0/1f/032867bfe33090d5ec5e7cdd7bcda293179441dc73f3a6b380 2025-10-15T14:23:57,627 Successfully built fibsem 2025-10-15T14:23:57,850 Removed build tracker: '/tmp/pip-build-tracker-5dyyi6cl'