2025-10-15T16:48:31,050 Created temporary directory: /tmp/pip-build-tracker-mmbztcmw 2025-10-15T16:48:31,051 Initialized build tracking at /tmp/pip-build-tracker-mmbztcmw 2025-10-15T16:48:31,051 Created build tracker: /tmp/pip-build-tracker-mmbztcmw 2025-10-15T16:48:31,051 Entered build tracker: /tmp/pip-build-tracker-mmbztcmw 2025-10-15T16:48:31,052 Created temporary directory: /tmp/pip-wheel-aeh0i7f5 2025-10-15T16:48:31,055 Created temporary directory: /tmp/pip-ephem-wheel-cache-vdhz330o 2025-10-15T16:48:31,112 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-15T16:48:31,115 2 location(s) to search for versions of gff3tool: 2025-10-15T16:48:31,115 * https://pypi.org/simple/gff3tool/ 2025-10-15T16:48:31,115 * https://www.piwheels.org/simple/gff3tool/ 2025-10-15T16:48:31,115 Fetching project page and analyzing links: https://pypi.org/simple/gff3tool/ 2025-10-15T16:48:31,115 Getting page https://pypi.org/simple/gff3tool/ 2025-10-15T16:48:31,116 Found index url https://pypi.org/simple/ 2025-10-15T16:48:31,186 Fetched page https://pypi.org/simple/gff3tool/ as application/vnd.pypi.simple.v1+json 2025-10-15T16:48:31,188 Found link https://files.pythonhosted.org/packages/71/33/dac2be6f38dd40d4f914814e7afe2cc5391f1bfecc77439612284de537a1/gff3tool-1.1.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.1.0 2025-10-15T16:48:31,189 Found link https://files.pythonhosted.org/packages/a1/f1/6630128adac220623c28a5f5ed4e6cfa070589143a0b2151237c20923149/gff3tool-1.3.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.3.0 2025-10-15T16:48:31,189 Found link https://files.pythonhosted.org/packages/71/cb/9b9d73fd7171571b9ad063fa3a6aac684aeebc7e958a37e2423c690d5110/gff3tool-1.4.1.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.1 2025-10-15T16:48:31,189 Found link https://files.pythonhosted.org/packages/23/bb/0b7952dfc7fb8992e6d7349eb55cbbe51e6c0750d57e33c01de5be39da46/gff3tool-1.4.2.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.2 2025-10-15T16:48:31,189 Found link https://files.pythonhosted.org/packages/7c/79/b59b3e47735edfe2ac2a9334c8e2836d63c0899b51f9badc416ae07e8353/gff3tool-1.4.3.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.3 2025-10-15T16:48:31,189 Found link https://files.pythonhosted.org/packages/cf/33/8cd85764a601bf3a5e0116f8b457c308294ec9c25139aacade6e21860335/gff3tool-1.4.4.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.4 2025-10-15T16:48:31,190 Skipping link: No binaries permitted for gff3tool: https://files.pythonhosted.org/packages/2a/4c/a16d0aae5fa870fc7630eb0536042fd3e0494467efd9f27cea6090cdbbe0/gff3tool-1.4.5-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/gff3tool/) 2025-10-15T16:48:31,190 Found link https://files.pythonhosted.org/packages/f8/78/330f714b6e771d69079128a44f61830c9ce22969eaa3b176dafb94c48809/gff3tool-1.4.5.tar.gz (from https://pypi.org/simple/gff3tool/), version: 1.4.5 2025-10-15T16:48:31,190 Found link https://files.pythonhosted.org/packages/8a/82/0f528dc498d7fdfbd6b8a968ed1cfee43ffa55461e77830a22f606aea3bb/gff3tool-2.0.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.0.0 2025-10-15T16:48:31,190 Found link https://files.pythonhosted.org/packages/aa/b3/cecb768a048bf2e661f0e77bf3208ed8ef203acbd93107b1f00d7b57da1e/gff3tool-2.0.1.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.0.1 2025-10-15T16:48:31,190 Found link https://files.pythonhosted.org/packages/21/2e/7e77d34adec82b4d896c8959c7993534810f8bc43cc374e984e5635bbf94/gff3tool-2.0.3.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.0.3 2025-10-15T16:48:31,190 Found link https://files.pythonhosted.org/packages/7f/12/d177f42f6e3a73dae82fd5cc89e7404de121ab381e5454ca8da11110d88a/gff3tool-2.1.0.tar.gz (from https://pypi.org/simple/gff3tool/), version: 2.1.0 2025-10-15T16:48:31,191 Fetching project page and analyzing links: https://www.piwheels.org/simple/gff3tool/ 2025-10-15T16:48:31,191 Getting page https://www.piwheels.org/simple/gff3tool/ 2025-10-15T16:48:31,192 Found index url https://www.piwheels.org/simple/ 2025-10-15T16:48:31,306 Fetched page https://www.piwheels.org/simple/gff3tool/ as text/html 2025-10-15T16:48:31,313 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp311-cp311-linux_armv6l.whl#sha256=866502237ec1e32fd2caee5c04df61c4464dc7db901009e864c3f53ff3f43d94 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,314 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp311-cp311-linux_armv7l.whl#sha256=866502237ec1e32fd2caee5c04df61c4464dc7db901009e864c3f53ff3f43d94 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,314 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp35-cp35m-linux_armv6l.whl#sha256=5eef1c37d908cd2d30f368726348cf85a26dc4d95abc8131735de5c720d7975b (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,314 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp35-cp35m-linux_armv7l.whl#sha256=5eef1c37d908cd2d30f368726348cf85a26dc4d95abc8131735de5c720d7975b (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,314 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp37-cp37m-linux_armv6l.whl#sha256=cfe6edebe5cd63bcd5cd38e34377d8c34eb8fdc675d148da65e75d4399db5ff6 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,314 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp37-cp37m-linux_armv7l.whl#sha256=cfe6edebe5cd63bcd5cd38e34377d8c34eb8fdc675d148da65e75d4399db5ff6 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,314 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp39-cp39-linux_armv6l.whl#sha256=acb5d3cb45afefe5eab3c74db7b776dda5cf59ce38bb15cbde8edddd6079c343 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,315 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.1.0-cp39-cp39-linux_armv7l.whl#sha256=acb5d3cb45afefe5eab3c74db7b776dda5cf59ce38bb15cbde8edddd6079c343 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,315 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp311-cp311-linux_armv6l.whl#sha256=95e1e75ca03aacb334f33561f347c21a95265b3d091aad9a31329060ff7c1931 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,315 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp311-cp311-linux_armv7l.whl#sha256=95e1e75ca03aacb334f33561f347c21a95265b3d091aad9a31329060ff7c1931 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,315 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp35-cp35m-linux_armv6l.whl#sha256=ce80154080e74e3fb30b340e7a76661a4b8f3d78c6104490aa6da9c40fdc91d6 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,315 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp35-cp35m-linux_armv7l.whl#sha256=ce80154080e74e3fb30b340e7a76661a4b8f3d78c6104490aa6da9c40fdc91d6 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,315 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp37-cp37m-linux_armv6l.whl#sha256=79c3e33604c37bc449a60874dbc1520dde9140874fb47948d3a087eeec48f52f (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,315 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp37-cp37m-linux_armv7l.whl#sha256=79c3e33604c37bc449a60874dbc1520dde9140874fb47948d3a087eeec48f52f (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,316 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp39-cp39-linux_armv6l.whl#sha256=66d9164d8245e216f080754a89df8cda4192f034e99a32532198ccf3c38f6faa (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,316 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp39-cp39-linux_armv7l.whl#sha256=66d9164d8245e216f080754a89df8cda4192f034e99a32532198ccf3c38f6faa (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,316 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp313-cp313-linux_armv6l.whl#sha256=03c08d66d1f98279928ecc7638ce330448af8b9dbad848a8bdea016b154c98f7 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,316 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.3-cp313-cp313-linux_armv7l.whl#sha256=03c08d66d1f98279928ecc7638ce330448af8b9dbad848a8bdea016b154c98f7 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,316 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp35-cp35m-linux_armv6l.whl#sha256=baa47b3147a931daf4958a447f96979e4448707996cc9d60ac45ad3ebb8e9c1f (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,316 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp35-cp35m-linux_armv7l.whl#sha256=baa47b3147a931daf4958a447f96979e4448707996cc9d60ac45ad3ebb8e9c1f (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,317 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp34-cp34m-linux_armv6l.whl#sha256=fa519097d18d8d8239808e305f0bb0549b3dd93a72ed8d5ea6f45d785e6bef11 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,317 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp34-cp34m-linux_armv7l.whl#sha256=fa519097d18d8d8239808e305f0bb0549b3dd93a72ed8d5ea6f45d785e6bef11 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,317 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp37-cp37m-linux_armv7l.whl#sha256=88be7d8c71c322212fdc989a672f6e0f10ed299cb5615d7d34f70058a0d6f928 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,317 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp37-cp37m-linux_armv6l.whl#sha256=88be7d8c71c322212fdc989a672f6e0f10ed299cb5615d7d34f70058a0d6f928 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,317 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp39-cp39-linux_armv6l.whl#sha256=a89f1ece9e20b3183b0eba298b269f1c4b0109af60b409f5d3f7bc0be4914bfd (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,317 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp39-cp39-linux_armv7l.whl#sha256=a89f1ece9e20b3183b0eba298b269f1c4b0109af60b409f5d3f7bc0be4914bfd (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,317 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp311-cp311-linux_armv6l.whl#sha256=a9753f3c49fd1cb2cdd4a192e12efbded3d886fc08011031e9ebaeaf96095389 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,318 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp311-cp311-linux_armv7l.whl#sha256=a9753f3c49fd1cb2cdd4a192e12efbded3d886fc08011031e9ebaeaf96095389 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,318 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp313-cp313-linux_armv6l.whl#sha256=8ccb0023797e7a3b97eefc0af2ba5b4b6a46ba6d93e94d33185ae9aa3d8d14e6 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,318 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.1-cp313-cp313-linux_armv7l.whl#sha256=8ccb0023797e7a3b97eefc0af2ba5b4b6a46ba6d93e94d33185ae9aa3d8d14e6 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,318 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=7dbbba3501c691ddb06f2ace77ee9897d1e51e32f6e05430923d4a5e53b86174 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,318 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=7dbbba3501c691ddb06f2ace77ee9897d1e51e32f6e05430923d4a5e53b86174 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,318 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp35-cp35m-linux_armv6l.whl#sha256=a6d1a1bf91d08ad305f7476e9a3439e57749b4091c112cbf4f73569a4f711a68 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,318 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp35-cp35m-linux_armv7l.whl#sha256=a6d1a1bf91d08ad305f7476e9a3439e57749b4091c112cbf4f73569a4f711a68 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,319 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=0be9d0d0079481fcbd19198c4fba52c6703b11b043e14bc17cd9b7863857efde (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,319 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=0be9d0d0079481fcbd19198c4fba52c6703b11b043e14bc17cd9b7863857efde (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,319 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp34-cp34m-linux_armv7l.whl#sha256=a6197f7982794de21eb411313c8591f643ea19667efba72907a0fbafd47ca4e7 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,319 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp34-cp34m-linux_armv6l.whl#sha256=a6197f7982794de21eb411313c8591f643ea19667efba72907a0fbafd47ca4e7 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,319 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp311-cp311-linux_armv6l.whl#sha256=036c36c64ae995bbd9b6234e9f0b2fdaed36e2a4869fa2885c0fa449d01f6bd1 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,319 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp311-cp311-linux_armv7l.whl#sha256=036c36c64ae995bbd9b6234e9f0b2fdaed36e2a4869fa2885c0fa449d01f6bd1 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,319 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp313-cp313-linux_armv6l.whl#sha256=36aca49c8ccdad145128cb794485f2cf06dd81b090083dca9db6aab38738ea84 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,320 Skipping link: No binaries permitted for gff3tool: https://www.piwheels.org/simple/gff3tool/gff3tool-2.0.0-cp313-cp313-linux_armv7l.whl#sha256=36aca49c8ccdad145128cb794485f2cf06dd81b090083dca9db6aab38738ea84 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,320 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-1.3.0-py3-none-any.whl#sha256=f993f46b60c812a88426ea96ad2c23aa521aee04c8bdad4016e21d03d6186291 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,320 Skipping link: No binaries permitted for gff3tool: https://archive1.piwheels.org/simple/gff3tool/gff3tool-1.1.0-py3-none-any.whl#sha256=f5eefabf7e1b27382cef033e939fd956121ebf02ae4e7085b83ade5f98c69d90 (from https://www.piwheels.org/simple/gff3tool/) 2025-10-15T16:48:31,320 Skipping link: not a file: https://www.piwheels.org/simple/gff3tool/ 2025-10-15T16:48:31,320 Skipping link: not a file: https://pypi.org/simple/gff3tool/ 2025-10-15T16:48:31,346 Given no hashes to check 1 links for project 'gff3tool': discarding no candidates 2025-10-15T16:48:31,347 Collecting gff3tool==2.1.0 2025-10-15T16:48:31,348 Created temporary directory: /tmp/pip-unpack-ikjrfved 2025-10-15T16:48:31,483 Downloading gff3tool-2.1.0.tar.gz (83 kB) 2025-10-15T16:48:31,561 Added gff3tool==2.1.0 from https://files.pythonhosted.org/packages/7f/12/d177f42f6e3a73dae82fd5cc89e7404de121ab381e5454ca8da11110d88a/gff3tool-2.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-mmbztcmw' 2025-10-15T16:48:31,562 Running setup.py (path:/tmp/pip-wheel-aeh0i7f5/gff3tool_89fe137b235644928ca83be60855ad56/setup.py) egg_info for package gff3tool 2025-10-15T16:48:31,563 Created temporary directory: /tmp/pip-pip-egg-info-tzd5kmef 2025-10-15T16:48:31,563 Preparing metadata (setup.py): started 2025-10-15T16:48:31,564 Running command python setup.py egg_info 2025-10-15T16:48:32,235 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'dist-dir' in 'sdist' (setup.cfg), please use the underscore name 'dist_dir' instead. 2025-10-15T16:48:32,235 !! 2025-10-15T16:48:32,235 ******************************************************************************** 2025-10-15T16:48:32,235 Usage of dash-separated 'dist-dir' will not be supported in future 2025-10-15T16:48:32,236 versions. Please use the underscore name 'dist_dir' instead. 2025-10-15T16:48:32,236 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-10-15T16:48:32,236 or your builds will no longer be supported. 2025-10-15T16:48:32,236 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-10-15T16:48:32,236 ******************************************************************************** 2025-10-15T16:48:32,236 !! 2025-10-15T16:48:32,236 opt = self._enforce_underscore(opt, section) 2025-10-15T16:48:32,236 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-10-15T16:48:32,237 !! 2025-10-15T16:48:32,237 ******************************************************************************** 2025-10-15T16:48:32,237 Usage of dash-separated 'description-file' will not be supported in future 2025-10-15T16:48:32,237 versions. Please use the underscore name 'description_file' instead. 2025-10-15T16:48:32,237 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-10-15T16:48:32,237 or your builds will no longer be supported. 2025-10-15T16:48:32,237 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-10-15T16:48:32,237 ******************************************************************************** 2025-10-15T16:48:32,238 !! 2025-10-15T16:48:32,238 opt = self._enforce_underscore(opt, section) 2025-10-15T16:48:32,238 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'long-description-content-type' in 'metadata' (setup.cfg), please use the underscore name 'long_description_content_type' instead. 2025-10-15T16:48:32,238 !! 2025-10-15T16:48:32,238 ******************************************************************************** 2025-10-15T16:48:32,238 Usage of dash-separated 'long-description-content-type' will not be supported in future 2025-10-15T16:48:32,238 versions. Please use the underscore name 'long_description_content_type' instead. 2025-10-15T16:48:32,238 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-10-15T16:48:32,239 or your builds will no longer be supported. 2025-10-15T16:48:32,239 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-10-15T16:48:32,239 ******************************************************************************** 2025-10-15T16:48:32,239 !! 2025-10-15T16:48:32,239 opt = self._enforce_underscore(opt, section) 2025-10-15T16:48:32,673 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'dist-dir' in 'sdist' (setup.cfg), please use the underscore name 'dist_dir' instead. 2025-10-15T16:48:32,673 !! 2025-10-15T16:48:32,673 ******************************************************************************** 2025-10-15T16:48:32,674 Usage of dash-separated 'dist-dir' will not be supported in future 2025-10-15T16:48:32,674 versions. Please use the underscore name 'dist_dir' instead. 2025-10-15T16:48:32,674 (Affected: gff3tool). 2025-10-15T16:48:32,674 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-10-15T16:48:32,674 or your builds will no longer be supported. 2025-10-15T16:48:32,674 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-10-15T16:48:32,674 ******************************************************************************** 2025-10-15T16:48:32,674 !! 2025-10-15T16:48:32,674 opt = self._enforce_underscore(opt, section) 2025-10-15T16:48:32,675 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-10-15T16:48:32,675 !! 2025-10-15T16:48:32,675 ******************************************************************************** 2025-10-15T16:48:32,675 Usage of dash-separated 'description-file' will not be supported in future 2025-10-15T16:48:32,675 versions. Please use the underscore name 'description_file' instead. 2025-10-15T16:48:32,675 (Affected: gff3tool). 2025-10-15T16:48:32,675 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-10-15T16:48:32,675 or your builds will no longer be supported. 2025-10-15T16:48:32,676 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-10-15T16:48:32,676 ******************************************************************************** 2025-10-15T16:48:32,676 !! 2025-10-15T16:48:32,676 opt = self._enforce_underscore(opt, section) 2025-10-15T16:48:32,676 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'long-description-content-type' in 'metadata' (setup.cfg), please use the underscore name 'long_description_content_type' instead. 2025-10-15T16:48:32,676 !! 2025-10-15T16:48:32,676 ******************************************************************************** 2025-10-15T16:48:32,676 Usage of dash-separated 'long-description-content-type' will not be supported in future 2025-10-15T16:48:32,676 versions. Please use the underscore name 'long_description_content_type' instead. 2025-10-15T16:48:32,677 (Affected: gff3tool). 2025-10-15T16:48:32,677 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-10-15T16:48:32,677 or your builds will no longer be supported. 2025-10-15T16:48:32,677 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-10-15T16:48:32,677 ******************************************************************************** 2025-10-15T16:48:32,677 !! 2025-10-15T16:48:32,677 opt = self._enforce_underscore(opt, section) 2025-10-15T16:48:32,677 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-15T16:48:32,678 !! 2025-10-15T16:48:32,678 ******************************************************************************** 2025-10-15T16:48:32,678 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-15T16:48:32,678 License :: Public Domain 2025-10-15T16:48:32,678 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-15T16:48:32,678 ******************************************************************************** 2025-10-15T16:48:32,678 !! 2025-10-15T16:48:32,678 self._finalize_license_expression() 2025-10-15T16:48:32,750 running egg_info 2025-10-15T16:48:32,826 creating /tmp/pip-pip-egg-info-tzd5kmef/gff3tool.egg-info 2025-10-15T16:48:32,826 writing /tmp/pip-pip-egg-info-tzd5kmef/gff3tool.egg-info/PKG-INFO 2025-10-15T16:48:32,827 writing dependency_links to /tmp/pip-pip-egg-info-tzd5kmef/gff3tool.egg-info/dependency_links.txt 2025-10-15T16:48:32,828 writing entry points to /tmp/pip-pip-egg-info-tzd5kmef/gff3tool.egg-info/entry_points.txt 2025-10-15T16:48:32,828 writing top-level names to /tmp/pip-pip-egg-info-tzd5kmef/gff3tool.egg-info/top_level.txt 2025-10-15T16:48:32,829 writing manifest file '/tmp/pip-pip-egg-info-tzd5kmef/gff3tool.egg-info/SOURCES.txt' 2025-10-15T16:48:32,984 reading manifest file '/tmp/pip-pip-egg-info-tzd5kmef/gff3tool.egg-info/SOURCES.txt' 2025-10-15T16:48:32,985 reading manifest template 'MANIFEST.in' 2025-10-15T16:48:32,990 writing manifest file '/tmp/pip-pip-egg-info-tzd5kmef/gff3tool.egg-info/SOURCES.txt' 2025-10-15T16:48:33,098 Preparing metadata (setup.py): finished with status 'done' 2025-10-15T16:48:33,103 Source in /tmp/pip-wheel-aeh0i7f5/gff3tool_89fe137b235644928ca83be60855ad56 has version 2.1.0, which satisfies requirement gff3tool==2.1.0 from https://files.pythonhosted.org/packages/7f/12/d177f42f6e3a73dae82fd5cc89e7404de121ab381e5454ca8da11110d88a/gff3tool-2.1.0.tar.gz 2025-10-15T16:48:33,104 Removed gff3tool==2.1.0 from https://files.pythonhosted.org/packages/7f/12/d177f42f6e3a73dae82fd5cc89e7404de121ab381e5454ca8da11110d88a/gff3tool-2.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-mmbztcmw' 2025-10-15T16:48:33,108 Created temporary directory: /tmp/pip-unpack-fd2ydvyk 2025-10-15T16:48:33,108 Created temporary directory: /tmp/pip-unpack-iglshass 2025-10-15T16:48:33,108 Building wheels for collected packages: gff3tool 2025-10-15T16:48:33,110 Created temporary directory: /tmp/pip-wheel-19ni3ji4 2025-10-15T16:48:33,110 DEPRECATION: Building 'gff3tool' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'gff3tool'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-10-15T16:48:33,111 Building wheel for gff3tool (setup.py): started 2025-10-15T16:48:33,112 Destination directory: /tmp/pip-wheel-19ni3ji4 2025-10-15T16:48:33,112 Running command python setup.py bdist_wheel 2025-10-15T16:48:33,767 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'dist-dir' in 'sdist' (setup.cfg), please use the underscore name 'dist_dir' instead. 2025-10-15T16:48:33,767 !! 2025-10-15T16:48:33,767 ******************************************************************************** 2025-10-15T16:48:33,767 Usage of dash-separated 'dist-dir' will not be supported in future 2025-10-15T16:48:33,767 versions. Please use the underscore name 'dist_dir' instead. 2025-10-15T16:48:33,767 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-10-15T16:48:33,767 or your builds will no longer be supported. 2025-10-15T16:48:33,768 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-10-15T16:48:33,768 ******************************************************************************** 2025-10-15T16:48:33,768 !! 2025-10-15T16:48:33,768 opt = self._enforce_underscore(opt, section) 2025-10-15T16:48:33,768 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-10-15T16:48:33,768 !! 2025-10-15T16:48:33,768 ******************************************************************************** 2025-10-15T16:48:33,768 Usage of dash-separated 'description-file' will not be supported in future 2025-10-15T16:48:33,769 versions. Please use the underscore name 'description_file' instead. 2025-10-15T16:48:33,769 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-10-15T16:48:33,769 or your builds will no longer be supported. 2025-10-15T16:48:33,769 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-10-15T16:48:33,769 ******************************************************************************** 2025-10-15T16:48:33,769 !! 2025-10-15T16:48:33,769 opt = self._enforce_underscore(opt, section) 2025-10-15T16:48:33,769 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'long-description-content-type' in 'metadata' (setup.cfg), please use the underscore name 'long_description_content_type' instead. 2025-10-15T16:48:33,770 !! 2025-10-15T16:48:33,770 ******************************************************************************** 2025-10-15T16:48:33,770 Usage of dash-separated 'long-description-content-type' will not be supported in future 2025-10-15T16:48:33,770 versions. Please use the underscore name 'long_description_content_type' instead. 2025-10-15T16:48:33,770 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-10-15T16:48:33,770 or your builds will no longer be supported. 2025-10-15T16:48:33,770 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-10-15T16:48:33,770 ******************************************************************************** 2025-10-15T16:48:33,771 !! 2025-10-15T16:48:33,771 opt = self._enforce_underscore(opt, section) 2025-10-15T16:48:34,195 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'dist-dir' in 'sdist' (setup.cfg), please use the underscore name 'dist_dir' instead. 2025-10-15T16:48:34,195 !! 2025-10-15T16:48:34,195 ******************************************************************************** 2025-10-15T16:48:34,195 Usage of dash-separated 'dist-dir' will not be supported in future 2025-10-15T16:48:34,195 versions. Please use the underscore name 'dist_dir' instead. 2025-10-15T16:48:34,195 (Affected: gff3tool). 2025-10-15T16:48:34,196 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-10-15T16:48:34,196 or your builds will no longer be supported. 2025-10-15T16:48:34,196 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-10-15T16:48:34,196 ******************************************************************************** 2025-10-15T16:48:34,196 !! 2025-10-15T16:48:34,196 opt = self._enforce_underscore(opt, section) 2025-10-15T16:48:34,196 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-10-15T16:48:34,196 !! 2025-10-15T16:48:34,197 ******************************************************************************** 2025-10-15T16:48:34,197 Usage of dash-separated 'description-file' will not be supported in future 2025-10-15T16:48:34,197 versions. Please use the underscore name 'description_file' instead. 2025-10-15T16:48:34,197 (Affected: gff3tool). 2025-10-15T16:48:34,197 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-10-15T16:48:34,197 or your builds will no longer be supported. 2025-10-15T16:48:34,197 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-10-15T16:48:34,197 ******************************************************************************** 2025-10-15T16:48:34,198 !! 2025-10-15T16:48:34,198 opt = self._enforce_underscore(opt, section) 2025-10-15T16:48:34,198 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'long-description-content-type' in 'metadata' (setup.cfg), please use the underscore name 'long_description_content_type' instead. 2025-10-15T16:48:34,198 !! 2025-10-15T16:48:34,198 ******************************************************************************** 2025-10-15T16:48:34,198 Usage of dash-separated 'long-description-content-type' will not be supported in future 2025-10-15T16:48:34,198 versions. Please use the underscore name 'long_description_content_type' instead. 2025-10-15T16:48:34,198 (Affected: gff3tool). 2025-10-15T16:48:34,198 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-10-15T16:48:34,199 or your builds will no longer be supported. 2025-10-15T16:48:34,199 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-10-15T16:48:34,199 ******************************************************************************** 2025-10-15T16:48:34,199 !! 2025-10-15T16:48:34,199 opt = self._enforce_underscore(opt, section) 2025-10-15T16:48:34,199 /usr/local/lib/python3.13/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-15T16:48:34,199 !! 2025-10-15T16:48:34,199 ******************************************************************************** 2025-10-15T16:48:34,200 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-15T16:48:34,200 License :: Public Domain 2025-10-15T16:48:34,200 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-15T16:48:34,200 ******************************************************************************** 2025-10-15T16:48:34,200 !! 2025-10-15T16:48:34,200 self._finalize_license_expression() 2025-10-15T16:48:34,200 running bdist_wheel 2025-10-15T16:48:34,495 running build 2025-10-15T16:48:49,408 /tmp/pip-wheel-aeh0i7f5/gff3tool_89fe137b235644928ca83be60855ad56/setup.py:62: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. 2025-10-15T16:48:49,408 tar.extractall(blast_path) 2025-10-15T16:48:58,231 /usr/local/lib/python3.13/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-10-15T16:48:58,231 !! 2025-10-15T16:48:58,232 ******************************************************************************** 2025-10-15T16:48:58,232 Please avoid running ``setup.py`` directly. 2025-10-15T16:48:58,232 Instead, use pypa/build, pypa/installer or other 2025-10-15T16:48:58,232 standards-based tools. 2025-10-15T16:48:58,232 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-10-15T16:48:58,232 or your builds will no longer be supported. 2025-10-15T16:48:58,232 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-10-15T16:48:58,232 ******************************************************************************** 2025-10-15T16:48:58,233 !! 2025-10-15T16:48:58,233 self.initialize_options() 2025-10-15T16:48:58,306 installing to build/bdist.linux-armv7l/wheel 2025-10-15T16:48:58,306 running install 2025-10-15T16:48:58,328 running install_lib 2025-10-15T16:48:58,401 running build_py 2025-10-15T16:48:58,480 creating build/lib/gff3tool 2025-10-15T16:48:58,480 copying gff3tool/__init__.py -> build/lib/gff3tool 2025-10-15T16:48:58,481 creating build/lib/gff3tool/lib 2025-10-15T16:48:58,482 copying gff3tool/lib/utils.py -> build/lib/gff3tool/lib 2025-10-15T16:48:58,482 copying gff3tool/lib/replace_OGS.py -> build/lib/gff3tool/lib 2025-10-15T16:48:58,483 copying gff3tool/lib/id_processor.py -> build/lib/gff3tool/lib 2025-10-15T16:48:58,484 copying gff3tool/lib/gff3_ID_generator.py -> build/lib/gff3tool/lib 2025-10-15T16:48:58,484 copying gff3tool/lib/__init__.py -> build/lib/gff3tool/lib 2025-10-15T16:48:58,485 creating build/lib/gff3tool/bin 2025-10-15T16:48:58,485 copying gff3tool/bin/version.py -> build/lib/gff3tool/bin 2025-10-15T16:48:58,486 copying gff3tool/bin/gff3_to_fasta.py -> build/lib/gff3tool/bin 2025-10-15T16:48:58,486 copying gff3tool/bin/gff3_sort.py -> build/lib/gff3tool/bin 2025-10-15T16:48:58,487 copying gff3tool/bin/gff3_merge.py -> build/lib/gff3tool/bin 2025-10-15T16:48:58,487 copying gff3tool/bin/gff3_fix.py -> build/lib/gff3tool/bin 2025-10-15T16:48:58,488 copying gff3tool/bin/gff3_QC.py -> build/lib/gff3tool/bin 2025-10-15T16:48:58,488 copying gff3tool/bin/__init__.py -> build/lib/gff3tool/bin 2025-10-15T16:48:58,489 creating build/lib/gff3tool/lib/single_feature 2025-10-15T16:48:58,489 copying gff3tool/lib/single_feature/single_feature.py -> build/lib/gff3tool/lib/single_feature 2025-10-15T16:48:58,490 copying gff3tool/lib/single_feature/__init__.py -> build/lib/gff3tool/lib/single_feature 2025-10-15T16:48:58,491 creating build/lib/gff3tool/lib/intra_model 2025-10-15T16:48:58,491 copying gff3tool/lib/intra_model/intra_model.py -> build/lib/gff3tool/lib/intra_model 2025-10-15T16:48:58,491 copying gff3tool/lib/intra_model/__init__.py -> build/lib/gff3tool/lib/intra_model 2025-10-15T16:48:58,492 creating build/lib/gff3tool/lib/inter_model 2025-10-15T16:48:58,492 copying gff3tool/lib/inter_model/inter_model.py -> build/lib/gff3tool/lib/inter_model 2025-10-15T16:48:58,493 copying gff3tool/lib/inter_model/__init__.py -> build/lib/gff3tool/lib/inter_model 2025-10-15T16:48:58,494 creating build/lib/gff3tool/lib/gff3_merge 2025-10-15T16:48:58,494 copying gff3tool/lib/gff3_merge/revision.py -> build/lib/gff3tool/lib/gff3_merge 2025-10-15T16:48:58,495 copying gff3tool/lib/gff3_merge/merge.py -> build/lib/gff3tool/lib/gff3_merge 2025-10-15T16:48:58,495 copying gff3tool/lib/gff3_merge/auto_replace_tag.py -> build/lib/gff3tool/lib/gff3_merge 2025-10-15T16:48:58,496 copying gff3tool/lib/gff3_merge/__init__.py -> build/lib/gff3tool/lib/gff3_merge 2025-10-15T16:48:58,496 creating build/lib/gff3tool/lib/gff3_fix 2025-10-15T16:48:58,497 copying gff3tool/lib/gff3_fix/fix.py -> build/lib/gff3tool/lib/gff3_fix 2025-10-15T16:48:58,497 copying gff3tool/lib/gff3_fix/__init__.py -> build/lib/gff3tool/lib/gff3_fix 2025-10-15T16:48:58,498 creating build/lib/gff3tool/lib/gff3 2025-10-15T16:48:58,498 copying gff3tool/lib/gff3/gff3.py -> build/lib/gff3tool/lib/gff3 2025-10-15T16:48:58,499 copying gff3tool/lib/gff3/__init__.py -> build/lib/gff3tool/lib/gff3 2025-10-15T16:48:58,500 creating build/lib/gff3tool/lib/function4gff 2025-10-15T16:48:58,500 copying gff3tool/lib/function4gff/function4gff.py -> build/lib/gff3tool/lib/function4gff 2025-10-15T16:48:58,501 copying gff3tool/lib/function4gff/__init__.py -> build/lib/gff3tool/lib/function4gff 2025-10-15T16:48:58,501 creating build/lib/gff3tool/lib/ERROR 2025-10-15T16:48:58,502 copying gff3tool/lib/ERROR/__init__.py -> build/lib/gff3tool/lib/ERROR 2025-10-15T16:48:58,502 copying gff3tool/lib/ERROR/ERROR.py -> build/lib/gff3tool/lib/ERROR 2025-10-15T16:48:58,503 running egg_info 2025-10-15T16:48:58,579 writing gff3tool.egg-info/PKG-INFO 2025-10-15T16:48:58,580 writing dependency_links to gff3tool.egg-info/dependency_links.txt 2025-10-15T16:48:58,580 writing entry points to gff3tool.egg-info/entry_points.txt 2025-10-15T16:48:58,581 writing top-level names to gff3tool.egg-info/top_level.txt 2025-10-15T16:48:58,663 reading manifest file 'gff3tool.egg-info/SOURCES.txt' 2025-10-15T16:48:58,666 reading manifest template 'MANIFEST.in' 2025-10-15T16:48:58,673 writing manifest file 'gff3tool.egg-info/SOURCES.txt' 2025-10-15T16:48:58,676 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'gff3tool.lib.auto_assignment' is absent from the `packages` configuration. 2025-10-15T16:48:58,676 !! 2025-10-15T16:48:58,676 ******************************************************************************** 2025-10-15T16:48:58,676 ############################ 2025-10-15T16:48:58,676 # Package would be ignored # 2025-10-15T16:48:58,677 ############################ 2025-10-15T16:48:58,677 Python recognizes 'gff3tool.lib.auto_assignment' as an importable package[^1], 2025-10-15T16:48:58,677 but it is absent from setuptools' `packages` configuration. 2025-10-15T16:48:58,677 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T16:48:58,677 package, please make sure that 'gff3tool.lib.auto_assignment' is explicitly added 2025-10-15T16:48:58,677 to the `packages` configuration field. 2025-10-15T16:48:58,677 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T16:48:58,677 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T16:48:58,677 instead of `find_packages(...)`/`find:`). 2025-10-15T16:48:58,678 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T16:48:58,678 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T16:48:58,678 If you don't want 'gff3tool.lib.auto_assignment' to be distributed and are 2025-10-15T16:48:58,678 already explicitly excluding 'gff3tool.lib.auto_assignment' via 2025-10-15T16:48:58,678 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T16:48:58,678 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T16:48:58,678 combination with a more fine grained `package-data` configuration. 2025-10-15T16:48:58,678 You can read more about "package data files" on setuptools documentation page: 2025-10-15T16:48:58,679 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T16:48:58,679 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T16:48:58,679 even if it does not contain any `.py` files. 2025-10-15T16:48:58,679 On the other hand, currently there is no concept of package data 2025-10-15T16:48:58,679 directory, all directories are treated like packages. 2025-10-15T16:48:58,679 ******************************************************************************** 2025-10-15T16:48:58,679 !! 2025-10-15T16:48:58,679 check.warn(importable) 2025-10-15T16:48:58,680 /usr/local/lib/python3.13/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'gff3tool.lib.check_gene_parent' is absent from the `packages` configuration. 2025-10-15T16:48:58,680 !! 2025-10-15T16:48:58,680 ******************************************************************************** 2025-10-15T16:48:58,680 ############################ 2025-10-15T16:48:58,680 # Package would be ignored # 2025-10-15T16:48:58,680 ############################ 2025-10-15T16:48:58,680 Python recognizes 'gff3tool.lib.check_gene_parent' as an importable package[^1], 2025-10-15T16:48:58,680 but it is absent from setuptools' `packages` configuration. 2025-10-15T16:48:58,680 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-15T16:48:58,681 package, please make sure that 'gff3tool.lib.check_gene_parent' is explicitly added 2025-10-15T16:48:58,681 to the `packages` configuration field. 2025-10-15T16:48:58,681 Alternatively, you can also rely on setuptools' discovery methods 2025-10-15T16:48:58,681 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-15T16:48:58,681 instead of `find_packages(...)`/`find:`). 2025-10-15T16:48:58,681 You can read more about "package discovery" on setuptools documentation page: 2025-10-15T16:48:58,681 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-15T16:48:58,682 If you don't want 'gff3tool.lib.check_gene_parent' to be distributed and are 2025-10-15T16:48:58,682 already explicitly excluding 'gff3tool.lib.check_gene_parent' via 2025-10-15T16:48:58,682 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-15T16:48:58,682 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-15T16:48:58,682 combination with a more fine grained `package-data` configuration. 2025-10-15T16:48:58,682 You can read more about "package data files" on setuptools documentation page: 2025-10-15T16:48:58,682 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-15T16:48:58,682 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-15T16:48:58,683 even if it does not contain any `.py` files. 2025-10-15T16:48:58,683 On the other hand, currently there is no concept of package data 2025-10-15T16:48:58,683 directory, all directories are treated like packages. 2025-10-15T16:48:58,683 ******************************************************************************** 2025-10-15T16:48:58,683 !! 2025-10-15T16:48:58,683 check.warn(importable) 2025-10-15T16:48:58,683 copying gff3tool/lib.md -> build/lib/gff3tool 2025-10-15T16:48:58,683 creating build/lib/gff3tool/lib/auto_assignment 2025-10-15T16:48:58,683 copying gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl -> build/lib/gff3tool/lib/auto_assignment 2025-10-15T16:48:58,684 copying gff3tool/lib/auto_assignment/find_match.pl -> build/lib/gff3tool/lib/auto_assignment 2025-10-15T16:48:58,684 copying gff3tool/lib/auto_assignment/gen_spreadsheet.pl -> build/lib/gff3tool/lib/auto_assignment 2025-10-15T16:48:58,685 creating build/lib/gff3tool/lib/check_gene_parent 2025-10-15T16:48:58,685 copying gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl -> build/lib/gff3tool/lib/check_gene_parent 2025-10-15T16:48:58,686 creating build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:48:58,686 copying gff3tool/lib/ncbi-blast+/bin/blast_formatter -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:48:58,803 copying gff3tool/lib/ncbi-blast+/bin/blastdb_aliastool -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:48:58,875 copying gff3tool/lib/ncbi-blast+/bin/blastdbcheck -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:48:58,956 copying gff3tool/lib/ncbi-blast+/bin/blastdbcmd -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:48:59,059 copying gff3tool/lib/ncbi-blast+/bin/blastn -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:48:59,173 copying gff3tool/lib/ncbi-blast+/bin/blastp -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:48:59,287 copying gff3tool/lib/ncbi-blast+/bin/blastx -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:48:59,402 copying gff3tool/lib/ncbi-blast+/bin/convert2blastmask -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:48:59,477 copying gff3tool/lib/ncbi-blast+/bin/deltablast -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:48:59,595 copying gff3tool/lib/ncbi-blast+/bin/dustmasker -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:48:59,672 copying gff3tool/lib/ncbi-blast+/bin/legacy_blast.pl -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:48:59,673 copying gff3tool/lib/ncbi-blast+/bin/makeblastdb -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:48:59,756 copying gff3tool/lib/ncbi-blast+/bin/makembindex -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:48:59,835 copying gff3tool/lib/ncbi-blast+/bin/makeprofiledb -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:48:59,913 copying gff3tool/lib/ncbi-blast+/bin/psiblast -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:00,029 copying gff3tool/lib/ncbi-blast+/bin/rpsblast -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:00,146 copying gff3tool/lib/ncbi-blast+/bin/rpstblastn -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:00,255 copying gff3tool/lib/ncbi-blast+/bin/segmasker -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:00,327 copying gff3tool/lib/ncbi-blast+/bin/tblastn -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:00,435 copying gff3tool/lib/ncbi-blast+/bin/tblastx -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:00,544 copying gff3tool/lib/ncbi-blast+/bin/update_blastdb.pl -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:00,545 copying gff3tool/lib/ncbi-blast+/bin/windowmasker -> build/lib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:00,631 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib 2025-10-15T16:49:00,632 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool 2025-10-15T16:49:00,632 copying build/lib/gff3tool/lib.md -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool 2025-10-15T16:49:00,633 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/bin 2025-10-15T16:49:00,633 copying build/lib/gff3tool/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/bin 2025-10-15T16:49:00,634 copying build/lib/gff3tool/bin/gff3_QC.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/bin 2025-10-15T16:49:00,634 copying build/lib/gff3tool/bin/gff3_fix.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/bin 2025-10-15T16:49:00,634 copying build/lib/gff3tool/bin/gff3_merge.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/bin 2025-10-15T16:49:00,635 copying build/lib/gff3tool/bin/gff3_sort.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/bin 2025-10-15T16:49:00,635 copying build/lib/gff3tool/bin/gff3_to_fasta.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/bin 2025-10-15T16:49:00,636 copying build/lib/gff3tool/bin/version.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/bin 2025-10-15T16:49:00,636 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib 2025-10-15T16:49:00,637 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+ 2025-10-15T16:49:00,637 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:00,637 copying build/lib/gff3tool/lib/ncbi-blast+/bin/windowmasker -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:00,711 copying build/lib/gff3tool/lib/ncbi-blast+/bin/update_blastdb.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:00,711 copying build/lib/gff3tool/lib/ncbi-blast+/bin/tblastx -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:00,805 copying build/lib/gff3tool/lib/ncbi-blast+/bin/tblastn -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:00,899 copying build/lib/gff3tool/lib/ncbi-blast+/bin/segmasker -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:00,962 copying build/lib/gff3tool/lib/ncbi-blast+/bin/rpstblastn -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:01,058 copying build/lib/gff3tool/lib/ncbi-blast+/bin/rpsblast -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:01,166 copying build/lib/gff3tool/lib/ncbi-blast+/bin/psiblast -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:01,276 copying build/lib/gff3tool/lib/ncbi-blast+/bin/makeprofiledb -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:01,349 copying build/lib/gff3tool/lib/ncbi-blast+/bin/makembindex -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:01,422 copying build/lib/gff3tool/lib/ncbi-blast+/bin/makeblastdb -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:01,499 copying build/lib/gff3tool/lib/ncbi-blast+/bin/legacy_blast.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:01,499 copying build/lib/gff3tool/lib/ncbi-blast+/bin/dustmasker -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:01,570 copying build/lib/gff3tool/lib/ncbi-blast+/bin/deltablast -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:01,680 copying build/lib/gff3tool/lib/ncbi-blast+/bin/convert2blastmask -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:01,751 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastx -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:01,867 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastp -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:01,990 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastn -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:02,107 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastdbcmd -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:02,211 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastdbcheck -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:02,294 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastdb_aliastool -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:02,368 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blast_formatter -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin 2025-10-15T16:49:02,484 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/check_gene_parent 2025-10-15T16:49:02,484 copying build/lib/gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/check_gene_parent 2025-10-15T16:49:02,485 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/auto_assignment 2025-10-15T16:49:02,485 copying build/lib/gff3tool/lib/auto_assignment/gen_spreadsheet.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/auto_assignment 2025-10-15T16:49:02,486 copying build/lib/gff3tool/lib/auto_assignment/find_match.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/auto_assignment 2025-10-15T16:49:02,486 copying build/lib/gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/auto_assignment 2025-10-15T16:49:02,487 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ERROR 2025-10-15T16:49:02,487 copying build/lib/gff3tool/lib/ERROR/ERROR.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ERROR 2025-10-15T16:49:02,488 copying build/lib/gff3tool/lib/ERROR/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/ERROR 2025-10-15T16:49:02,488 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/function4gff 2025-10-15T16:49:02,488 copying build/lib/gff3tool/lib/function4gff/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/function4gff 2025-10-15T16:49:02,489 copying build/lib/gff3tool/lib/function4gff/function4gff.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/function4gff 2025-10-15T16:49:02,489 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3 2025-10-15T16:49:02,490 copying build/lib/gff3tool/lib/gff3/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3 2025-10-15T16:49:02,490 copying build/lib/gff3tool/lib/gff3/gff3.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3 2025-10-15T16:49:02,491 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_fix 2025-10-15T16:49:02,491 copying build/lib/gff3tool/lib/gff3_fix/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_fix 2025-10-15T16:49:02,491 copying build/lib/gff3tool/lib/gff3_fix/fix.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_fix 2025-10-15T16:49:02,492 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_merge 2025-10-15T16:49:02,492 copying build/lib/gff3tool/lib/gff3_merge/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_merge 2025-10-15T16:49:02,493 copying build/lib/gff3tool/lib/gff3_merge/auto_replace_tag.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_merge 2025-10-15T16:49:02,493 copying build/lib/gff3tool/lib/gff3_merge/merge.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_merge 2025-10-15T16:49:02,494 copying build/lib/gff3tool/lib/gff3_merge/revision.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_merge 2025-10-15T16:49:02,495 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/inter_model 2025-10-15T16:49:02,495 copying build/lib/gff3tool/lib/inter_model/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/inter_model 2025-10-15T16:49:02,495 copying build/lib/gff3tool/lib/inter_model/inter_model.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/inter_model 2025-10-15T16:49:02,496 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/intra_model 2025-10-15T16:49:02,496 copying build/lib/gff3tool/lib/intra_model/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/intra_model 2025-10-15T16:49:02,497 copying build/lib/gff3tool/lib/intra_model/intra_model.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/intra_model 2025-10-15T16:49:02,497 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/single_feature 2025-10-15T16:49:02,497 copying build/lib/gff3tool/lib/single_feature/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/single_feature 2025-10-15T16:49:02,498 copying build/lib/gff3tool/lib/single_feature/single_feature.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib/single_feature 2025-10-15T16:49:02,498 copying build/lib/gff3tool/lib/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib 2025-10-15T16:49:02,499 copying build/lib/gff3tool/lib/gff3_ID_generator.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib 2025-10-15T16:49:02,499 copying build/lib/gff3tool/lib/id_processor.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib 2025-10-15T16:49:02,499 copying build/lib/gff3tool/lib/replace_OGS.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib 2025-10-15T16:49:02,500 copying build/lib/gff3tool/lib/utils.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool/lib 2025-10-15T16:49:02,500 copying build/lib/gff3tool/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool 2025-10-15T16:49:02,501 running install_egg_info 2025-10-15T16:49:02,640 Copying gff3tool.egg-info to build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.data/purelib/gff3tool-2.1.0-py3.13.egg-info 2025-10-15T16:49:02,642 running install_scripts 2025-10-15T16:49:02,694 creating build/bdist.linux-armv7l/wheel/gff3tool-2.1.0.dist-info/WHEEL 2025-10-15T16:49:02,695 creating '/tmp/pip-wheel-19ni3ji4/gff3tool-2.1.0-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-10-15T16:49:02,696 adding 'gff3tool-2.1.0.data/purelib/gff3tool/__init__.py' 2025-10-15T16:49:02,697 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib.md' 2025-10-15T16:49:02,697 adding 'gff3tool-2.1.0.data/purelib/gff3tool/bin/__init__.py' 2025-10-15T16:49:02,698 adding 'gff3tool-2.1.0.data/purelib/gff3tool/bin/gff3_QC.py' 2025-10-15T16:49:02,699 adding 'gff3tool-2.1.0.data/purelib/gff3tool/bin/gff3_fix.py' 2025-10-15T16:49:02,701 adding 'gff3tool-2.1.0.data/purelib/gff3tool/bin/gff3_merge.py' 2025-10-15T16:49:02,703 adding 'gff3tool-2.1.0.data/purelib/gff3tool/bin/gff3_sort.py' 2025-10-15T16:49:02,706 adding 'gff3tool-2.1.0.data/purelib/gff3tool/bin/gff3_to_fasta.py' 2025-10-15T16:49:02,707 adding 'gff3tool-2.1.0.data/purelib/gff3tool/bin/version.py' 2025-10-15T16:49:02,707 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/__init__.py' 2025-10-15T16:49:02,709 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_ID_generator.py' 2025-10-15T16:49:02,711 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/id_processor.py' 2025-10-15T16:49:02,714 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/replace_OGS.py' 2025-10-15T16:49:02,715 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/utils.py' 2025-10-15T16:49:02,716 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ERROR/ERROR.py' 2025-10-15T16:49:02,717 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ERROR/__init__.py' 2025-10-15T16:49:02,718 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl' 2025-10-15T16:49:02,719 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/auto_assignment/find_match.pl' 2025-10-15T16:49:02,720 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/auto_assignment/gen_spreadsheet.pl' 2025-10-15T16:49:02,721 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl' 2025-10-15T16:49:02,722 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/function4gff/__init__.py' 2025-10-15T16:49:02,723 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/function4gff/function4gff.py' 2025-10-15T16:49:02,724 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3/__init__.py' 2025-10-15T16:49:02,731 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3/gff3.py' 2025-10-15T16:49:02,733 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_fix/__init__.py' 2025-10-15T16:49:02,736 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_fix/fix.py' 2025-10-15T16:49:02,737 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_merge/__init__.py' 2025-10-15T16:49:02,738 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_merge/auto_replace_tag.py' 2025-10-15T16:49:02,739 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_merge/merge.py' 2025-10-15T16:49:02,741 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/gff3_merge/revision.py' 2025-10-15T16:49:02,741 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/inter_model/__init__.py' 2025-10-15T16:49:02,742 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/inter_model/inter_model.py' 2025-10-15T16:49:02,743 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/intra_model/__init__.py' 2025-10-15T16:49:02,745 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/intra_model/intra_model.py' 2025-10-15T16:49:07,702 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/blast_formatter' 2025-10-15T16:49:10,994 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastdb_aliastool' 2025-10-15T16:49:14,616 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastdbcheck' 2025-10-15T16:49:19,158 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastdbcmd' 2025-10-15T16:49:24,292 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastn' 2025-10-15T16:49:29,437 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastp' 2025-10-15T16:49:34,575 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastx' 2025-10-15T16:49:38,008 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/convert2blastmask' 2025-10-15T16:49:43,113 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/deltablast' 2025-10-15T16:49:46,580 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/dustmasker' 2025-10-15T16:49:46,715 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/legacy_blast.pl' 2025-10-15T16:49:50,243 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/makeblastdb' 2025-10-15T16:49:53,737 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/makembindex' 2025-10-15T16:49:57,147 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/makeprofiledb' 2025-10-15T16:50:02,231 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/psiblast' 2025-10-15T16:50:07,365 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/rpsblast' 2025-10-15T16:50:12,496 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/rpstblastn' 2025-10-15T16:50:15,999 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/segmasker' 2025-10-15T16:50:21,068 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/tblastn' 2025-10-15T16:50:26,196 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/tblastx' 2025-10-15T16:50:26,398 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/update_blastdb.pl' 2025-10-15T16:50:30,248 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/ncbi-blast+/bin/windowmasker' 2025-10-15T16:50:30,406 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/single_feature/__init__.py' 2025-10-15T16:50:30,407 adding 'gff3tool-2.1.0.data/purelib/gff3tool/lib/single_feature/single_feature.py' 2025-10-15T16:50:30,409 adding 'gff3tool-2.1.0.dist-info/METADATA' 2025-10-15T16:50:30,410 adding 'gff3tool-2.1.0.dist-info/WHEEL' 2025-10-15T16:50:30,410 adding 'gff3tool-2.1.0.dist-info/entry_points.txt' 2025-10-15T16:50:30,411 adding 'gff3tool-2.1.0.dist-info/top_level.txt' 2025-10-15T16:50:30,413 adding 'gff3tool-2.1.0.dist-info/RECORD' 2025-10-15T16:50:30,414 removing build/bdist.linux-armv7l/wheel 2025-10-15T16:50:30,708 Building wheel for gff3tool (setup.py): finished with status 'done' 2025-10-15T16:50:32,472 Created wheel for gff3tool: filename=gff3tool-2.1.0-cp313-cp313-linux_armv7l.whl size=177059742 sha256=da39307fd0c1a163a530318622066a1d3b3c06ce22a6b823476f7ba623f6d5b2 2025-10-15T16:50:32,473 Stored in directory: /tmp/pip-ephem-wheel-cache-vdhz330o/wheels/ab/2d/b3/3dbd50491691a9de00a0cd1e51aed6cecf202b97a62b5ce023 2025-10-15T16:50:32,483 Successfully built gff3tool 2025-10-15T16:50:32,842 Removed build tracker: '/tmp/pip-build-tracker-mmbztcmw'