2025-10-15T21:23:52,377 Created temporary directory: /tmp/pip-ephem-wheel-cache-w80c_ijb
2025-10-15T21:23:52,379 Created temporary directory: /tmp/pip-build-tracker-ilq5zwt_
2025-10-15T21:23:52,380 Initialized build tracking at /tmp/pip-build-tracker-ilq5zwt_
2025-10-15T21:23:52,381 Created build tracker: /tmp/pip-build-tracker-ilq5zwt_
2025-10-15T21:23:52,381 Entered build tracker: /tmp/pip-build-tracker-ilq5zwt_
2025-10-15T21:23:52,382 Created temporary directory: /tmp/pip-wheel-wx3ue562
2025-10-15T21:23:52,387 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-15T21:23:52,390 Created temporary directory: /tmp/pip-ephem-wheel-cache-568iq3mn
2025-10-15T21:23:52,428 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-15T21:23:52,434 2 location(s) to search for versions of unifrac:
2025-10-15T21:23:52,434 * https://pypi.org/simple/unifrac/
2025-10-15T21:23:52,434 * https://www.piwheels.org/simple/unifrac/
2025-10-15T21:23:52,435 Fetching project page and analyzing links: https://pypi.org/simple/unifrac/
2025-10-15T21:23:52,436 Getting page https://pypi.org/simple/unifrac/
2025-10-15T21:23:52,437 Found index url https://pypi.org/simple
2025-10-15T21:23:52,681 Fetched page https://pypi.org/simple/unifrac/ as application/vnd.pypi.simple.v1+json
2025-10-15T21:23:52,683   Found link https://files.pythonhosted.org/packages/be/89/683b0925dadf0c63f015aba45e56d943a738caa70f736233e8654dc4a713/unifrac-0.10.0.tar.gz (from https://pypi.org/simple/unifrac/), version: 0.10.0
2025-10-15T21:23:52,684   Found link https://files.pythonhosted.org/packages/c4/fe/bf6d6113ab675272f6eb6e593d6842e4f2c074ee9152b6f4316a621462f7/unifrac-0.20.1.tar.gz (from https://pypi.org/simple/unifrac/), version: 0.20.1
2025-10-15T21:23:52,684   Found link https://files.pythonhosted.org/packages/ef/40/fcc8a73f40b27682661cad19dac3fbc0ed4f5cd3593d86939b2eb7309956/unifrac-0.20.3.tar.gz (from https://pypi.org/simple/unifrac/), version: 0.20.3
2025-10-15T21:23:52,685   Found link https://files.pythonhosted.org/packages/6c/bd/f07d42bb11485de31f99fc08665ec6615d9a35d795124082452f38714e17/unifrac-1.3.2.tar.gz (from https://pypi.org/simple/unifrac/), version: 1.3.2
2025-10-15T21:23:52,686   Found link https://files.pythonhosted.org/packages/44/eb/f8ab4718919f5be3f0a6d6e279dcfb92a7d2c2a2fc8b66e51f54724ff148/unifrac-1.5.tar.gz (from https://pypi.org/simple/unifrac/), version: 1.5
2025-10-15T21:23:52,687 Fetching project page and analyzing links: https://www.piwheels.org/simple/unifrac/
2025-10-15T21:23:52,687 Getting page https://www.piwheels.org/simple/unifrac/
2025-10-15T21:23:52,688 Found index url https://www.piwheels.org/simple
2025-10-15T21:23:52,844 Fetched page https://www.piwheels.org/simple/unifrac/ as text/html
2025-10-15T21:23:52,845 Skipping link: not a file: https://www.piwheels.org/simple/unifrac/
2025-10-15T21:23:52,846 Skipping link: not a file: https://pypi.org/simple/unifrac/
2025-10-15T21:23:52,865 Given no hashes to check 1 links for project 'unifrac': discarding no candidates
2025-10-15T21:23:52,883 Collecting unifrac==1.5
2025-10-15T21:23:52,885   Created temporary directory: /tmp/pip-unpack-3i1gwctw
2025-10-15T21:23:53,098   Downloading unifrac-1.5.tar.gz (270 kB)
2025-10-15T21:23:53,299   Added unifrac==1.5 from https://files.pythonhosted.org/packages/44/eb/f8ab4718919f5be3f0a6d6e279dcfb92a7d2c2a2fc8b66e51f54724ff148/unifrac-1.5.tar.gz to build tracker '/tmp/pip-build-tracker-ilq5zwt_'
2025-10-15T21:23:53,308   Created temporary directory: /tmp/pip-build-env-2gctqdy0
2025-10-15T21:23:53,312   Installing build dependencies: started
2025-10-15T21:23:53,314   Running command pip subprocess to install build dependencies
2025-10-15T21:23:54,469   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-10-15T21:23:55,058   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-15T21:23:55,081   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-15T21:23:56,869   Collecting setuptools>=42.0.0
2025-10-15T21:23:56,989     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-10-15T21:23:58,857   Collecting cython>=0.26
2025-10-15T21:23:58,880     Using cached cython-3.1.4-py3-none-any.whl (1.2 MB)
2025-10-15T21:23:59,140   Collecting biom-format
2025-10-15T21:23:59,154     Downloading https://www.piwheels.org/simple/biom-format/biom_format-2.1.17-cp311-cp311-linux_armv7l.whl (12.2 MB)
2025-10-15T21:24:00,034        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.2/12.2 MB 13.1 MB/s eta 0:00:00
2025-10-15T21:24:01,496     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2025-10-15T21:24:01,504     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2025-10-15T21:24:01,511     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2025-10-15T21:24:01,518     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2025-10-15T21:24:01,525     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2025-10-15T21:24:02,318   Collecting numpy
2025-10-15T21:24:02,742     Using cached https://www.piwheels.org/simple/numpy/numpy-2.3.3-cp311-cp311-linux_armv7l.whl (6.1 MB)
2025-10-15T21:24:03,296   Collecting h5py>=3.3.0
2025-10-15T21:24:03,815     Using cached https://www.piwheels.org/simple/h5py/h5py-3.15.0-cp311-cp311-linux_armv7l.whl (7.4 MB)
2025-10-15T21:24:04,179   Collecting scikit-bio>=0.6.0
2025-10-15T21:24:04,414     Downloading https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp311-cp311-linux_armv7l.whl (7.2 MB)
2025-10-15T21:24:04,913        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.2/7.2 MB 14.7 MB/s eta 0:00:00
2025-10-15T21:24:05,266   Collecting click
2025-10-15T21:24:05,285     Using cached https://www.piwheels.org/simple/click/click-8.3.0-py3-none-any.whl (107 kB)
2025-10-15T21:24:05,855     Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/99/f1/c00d6be56e1a718a3068079e3ec8ce044d7179345280f6a3f5066068af0d/scipy-1.6.2.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.10)
2025-10-15T21:24:05,861     Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/fe/fd/8704c7b7b34cdac850485e638346025ca57c5a859934b9aa1be5399b33b7/scipy-1.6.3.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.10)
2025-10-15T21:24:05,866     Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/bb/bb/944f559d554df6c9adf037aa9fc982a9706ee0e96c0d5beac701cb158900/scipy-1.7.0.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.10)
2025-10-15T21:24:05,872     Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/47/33/a24aec22b7be7fdb10ec117a95e1e4099890d8bbc6646902f443fc7719d1/scipy-1.7.1.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.10)
2025-10-15T21:24:05,878     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/0e/23/58c4f995475a2a97cb5f4a032aedaf881ad87cd976a7180c55118d105a1d/scipy-1.7.2.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.11)
2025-10-15T21:24:05,885     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/61/67/1a654b96309c991762ee9bc39c363fc618076b155fe52d295211cf2536c7/scipy-1.7.3.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.7,<3.11)
2025-10-15T21:24:05,892     Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/c0/ad/e3c052ed4e0027a8abef0a5e8441a044427d252d17d9aee06d56e62fc698/scipy-1.8.0rc1.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11)
2025-10-15T21:24:05,898     Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/29/d2/151a54944b333e465f98804dced31dab1284f3c37b752b9cefa710b64681/scipy-1.8.0rc2.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11)
2025-10-15T21:24:05,904     Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/e4/26/83dd1c6378513a6241d984bda9f08c512b6e35fff13fba3acc1b3c195f02/scipy-1.8.0rc3.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11)
2025-10-15T21:24:05,910     Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/22/78/056cc43e7737811b6f50886788a940f852773dd9804f5365952805db9648/scipy-1.8.0rc4.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11)
2025-10-15T21:24:05,917     Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/b4/a2/4faa34bf0cdbefd5c706625f1234987795f368eb4e97bde9d6f46860843e/scipy-1.8.0.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11)
2025-10-15T21:24:05,923     Link requires a different Python (3.11.2 not in: '>=3.8,<3.11'): https://files.pythonhosted.org/packages/26/b5/9330f004b9a3b2b6a31f59f46f1617ce9ca15c0e7fe64288c20385a05c9d/scipy-1.8.1.tar.gz (from https://pypi.org/simple/scipy/) (requires-python:>=3.8,<3.11)
2025-10-15T21:24:06,340   Collecting scipy>=1.3.1
2025-10-15T21:24:08,402     Using cached https://www.piwheels.org/simple/scipy/scipy-1.16.2-cp311-cp311-linux_armv7l.whl (22.9 MB)
2025-10-15T21:24:10,221   Collecting pandas>=0.20.0
2025-10-15T21:24:11,094     Using cached https://www.piwheels.org/simple/pandas/pandas-2.3.3-cp311-cp311-linux_armv7l.whl (12.4 MB)
2025-10-15T21:24:11,773   Collecting requests>=2.20.0
2025-10-15T21:24:11,796     Using cached https://www.piwheels.org/simple/requests/requests-2.32.5-py3-none-any.whl (64 kB)
2025-10-15T21:24:12,009   Collecting decorator>=3.4.2
2025-10-15T21:24:12,024     Using cached https://www.piwheels.org/simple/decorator/decorator-5.2.1-py3-none-any.whl (8.9 kB)
2025-10-15T21:24:12,257   Collecting natsort>=4.0.3
2025-10-15T21:24:12,276     Using cached https://www.piwheels.org/simple/natsort/natsort-8.4.0-py3-none-any.whl (38 kB)
2025-10-15T21:24:12,791   Collecting statsmodels>=0.14.0
2025-10-15T21:24:12,978     Downloading https://archive1.piwheels.org/simple/statsmodels/statsmodels-0.14.4-cp311-cp311-linux_armv7l.whl (22.1 MB)
2025-10-15T21:24:14,952        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 22.1/22.1 MB 6.8 MB/s eta 0:00:00
2025-10-15T21:24:15,746   Collecting patsy>=0.5.0
2025-10-15T21:24:15,755     Downloading https://www.piwheels.org/simple/patsy/patsy-1.0.1-py2.py3-none-any.whl (232 kB)
2025-10-15T21:24:15,788        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 232.9/232.9 kB 9.2 MB/s eta 0:00:00
2025-10-15T21:24:16,234   Collecting python-dateutil>=2.8.2
2025-10-15T21:24:16,264     Using cached https://www.piwheels.org/simple/python-dateutil/python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
2025-10-15T21:24:16,571   Collecting pytz>=2020.1
2025-10-15T21:24:16,609     Using cached https://www.piwheels.org/simple/pytz/pytz-2025.2-py3-none-any.whl (509 kB)
2025-10-15T21:24:16,753   Collecting tzdata>=2022.7
2025-10-15T21:24:16,789     Using cached https://www.piwheels.org/simple/tzdata/tzdata-2025.2-py2.py3-none-any.whl (347 kB)
2025-10-15T21:24:17,579   Collecting charset_normalizer<4,>=2
2025-10-15T21:24:17,587     Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_armv7l.manylinux_2_17_armv7l.manylinux_2_31_armv7l.whl (142 kB)
2025-10-15T21:24:17,713   Collecting idna<4,>=2.5
2025-10-15T21:24:17,731     Using cached https://www.piwheels.org/simple/idna/idna-3.11-py3-none-any.whl (71 kB)
2025-10-15T21:24:18,081   Collecting urllib3<3,>=1.21.1
2025-10-15T21:24:18,120     Using cached https://www.piwheels.org/simple/urllib3/urllib3-2.5.0-py3-none-any.whl (129 kB)
2025-10-15T21:24:18,333   Collecting certifi>=2017.4.17
2025-10-15T21:24:18,360     Using cached https://www.piwheels.org/simple/certifi/certifi-2025.10.5-py3-none-any.whl (163 kB)
2025-10-15T21:24:18,967   Collecting packaging>=21.3
2025-10-15T21:24:18,984     Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB)
2025-10-15T21:24:19,158   Collecting six>=1.5
2025-10-15T21:24:19,172     Using cached https://www.piwheels.org/simple/six/six-1.17.0-py2.py3-none-any.whl (11 kB)
2025-10-15T21:24:23,161   Installing collected packages: pytz, urllib3, tzdata, six, setuptools, packaging, numpy, natsort, idna, decorator, cython, click, charset_normalizer, certifi, scipy, requests, python-dateutil, patsy, h5py, pandas, statsmodels, biom-format, scikit-bio
2025-10-15T21:24:38,161     Creating /tmp/pip-build-env-2gctqdy0/overlay/local/bin
2025-10-15T21:24:38,163     changing mode of /tmp/pip-build-env-2gctqdy0/overlay/local/bin/f2py to 755
2025-10-15T21:24:38,165     changing mode of /tmp/pip-build-env-2gctqdy0/overlay/local/bin/numpy-config to 755
2025-10-15T21:24:38,290     changing mode of /tmp/pip-build-env-2gctqdy0/overlay/local/bin/natsort to 755
2025-10-15T21:24:41,538     changing mode of /tmp/pip-build-env-2gctqdy0/overlay/local/bin/cygdb to 755
2025-10-15T21:24:41,540     changing mode of /tmp/pip-build-env-2gctqdy0/overlay/local/bin/cython to 755
2025-10-15T21:24:41,543     changing mode of /tmp/pip-build-env-2gctqdy0/overlay/local/bin/cythonize to 755
2025-10-15T21:24:41,981     changing mode of /tmp/pip-build-env-2gctqdy0/overlay/local/bin/normalizer to 755
2025-10-15T21:25:38,758     changing mode of /tmp/pip-build-env-2gctqdy0/overlay/local/bin/biom to 755
2025-10-15T21:25:43,087   Successfully installed biom-format-2.1.17 certifi-2025.10.5 charset_normalizer-3.4.4 click-8.3.0 cython-3.1.4 decorator-5.2.1 h5py-3.15.0 idna-3.11 natsort-8.4.0 numpy-2.3.3 packaging-25.0 pandas-2.3.3 patsy-1.0.1 python-dateutil-2.9.0.post0 pytz-2025.2 requests-2.32.5 scikit-bio-0.6.3 scipy-1.16.2 setuptools-80.9.0 six-1.17.0 statsmodels-0.14.4 tzdata-2025.2 urllib3-2.5.0
2025-10-15T21:25:43,807   Installing build dependencies: finished with status 'done'
2025-10-15T21:25:43,815   Getting requirements to build wheel: started
2025-10-15T21:25:43,817   Running command Getting requirements to build wheel
2025-10-15T21:25:51,894   Compiling unifrac/_api.pyx because it changed.
2025-10-15T21:25:51,895   [1/1] Cythonizing unifrac/_api.pyx
2025-10-15T21:25:52,004   running egg_info
2025-10-15T21:25:52,016   writing unifrac.egg-info/PKG-INFO
2025-10-15T21:25:52,023   writing dependency_links to unifrac.egg-info/dependency_links.txt
2025-10-15T21:25:52,027   writing requirements to unifrac.egg-info/requires.txt
2025-10-15T21:25:52,028   writing top-level names to unifrac.egg-info/top_level.txt
2025-10-15T21:25:52,060   dependency /tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-15T21:25:52,061   dependency /tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-15T21:25:52,061   dependency /tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-15T21:25:52,061   dependency /tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-15T21:25:52,062   dependency /tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-15T21:25:52,071   reading manifest file 'unifrac.egg-info/SOURCES.txt'
2025-10-15T21:25:52,074   reading manifest template 'MANIFEST.in'
2025-10-15T21:25:52,077   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2025-10-15T21:25:52,077   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2025-10-15T21:25:52,078   warning: no previously-included files matching '.git' found anywhere in distribution
2025-10-15T21:25:52,079   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-10-15T21:25:52,080   warning: no previously-included files matching '.*.swp' found anywhere in distribution
2025-10-15T21:25:52,080   adding license file 'LICENSE'
2025-10-15T21:25:52,083   writing manifest file 'unifrac.egg-info/SOURCES.txt'
2025-10-15T21:25:52,662   Getting requirements to build wheel: finished with status 'done'
2025-10-15T21:25:52,665   Created temporary directory: /tmp/pip-modern-metadata-l39yrbyo
2025-10-15T21:25:52,668   Preparing metadata (pyproject.toml): started
2025-10-15T21:25:52,669   Running command Preparing metadata (pyproject.toml)
2025-10-15T21:25:54,308   running dist_info
2025-10-15T21:25:54,330   creating /tmp/pip-modern-metadata-l39yrbyo/unifrac.egg-info
2025-10-15T21:25:54,331   writing /tmp/pip-modern-metadata-l39yrbyo/unifrac.egg-info/PKG-INFO
2025-10-15T21:25:54,339   writing dependency_links to /tmp/pip-modern-metadata-l39yrbyo/unifrac.egg-info/dependency_links.txt
2025-10-15T21:25:54,344   writing requirements to /tmp/pip-modern-metadata-l39yrbyo/unifrac.egg-info/requires.txt
2025-10-15T21:25:54,345   writing top-level names to /tmp/pip-modern-metadata-l39yrbyo/unifrac.egg-info/top_level.txt
2025-10-15T21:25:54,346   writing manifest file '/tmp/pip-modern-metadata-l39yrbyo/unifrac.egg-info/SOURCES.txt'
2025-10-15T21:25:54,375   dependency /tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-15T21:25:54,376   dependency /tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-15T21:25:54,377   dependency /tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-15T21:25:54,377   dependency /tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-15T21:25:54,378   dependency /tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-15T21:25:54,387   reading manifest file '/tmp/pip-modern-metadata-l39yrbyo/unifrac.egg-info/SOURCES.txt'
2025-10-15T21:25:54,389   reading manifest template 'MANIFEST.in'
2025-10-15T21:25:54,392   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2025-10-15T21:25:54,393   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2025-10-15T21:25:54,393   warning: no previously-included files matching '.git' found anywhere in distribution
2025-10-15T21:25:54,394   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-10-15T21:25:54,395   warning: no previously-included files matching '.*.swp' found anywhere in distribution
2025-10-15T21:25:54,396   adding license file 'LICENSE'
2025-10-15T21:25:54,399   writing manifest file '/tmp/pip-modern-metadata-l39yrbyo/unifrac.egg-info/SOURCES.txt'
2025-10-15T21:25:54,400   creating '/tmp/pip-modern-metadata-l39yrbyo/unifrac-1.5.dist-info'
2025-10-15T21:25:54,613   Preparing metadata (pyproject.toml): finished with status 'done'
2025-10-15T21:25:54,618   Source in /tmp/pip-wheel-wx3ue562/unifrac_00c3404c3da441f99a2f8d4a2ce43f58 has version 1.5, which satisfies requirement unifrac==1.5 from https://files.pythonhosted.org/packages/44/eb/f8ab4718919f5be3f0a6d6e279dcfb92a7d2c2a2fc8b66e51f54724ff148/unifrac-1.5.tar.gz
2025-10-15T21:25:54,620   Removed unifrac==1.5 from https://files.pythonhosted.org/packages/44/eb/f8ab4718919f5be3f0a6d6e279dcfb92a7d2c2a2fc8b66e51f54724ff148/unifrac-1.5.tar.gz from build tracker '/tmp/pip-build-tracker-ilq5zwt_'
2025-10-15T21:25:54,626 Created temporary directory: /tmp/pip-unpack-gl2t6a26
2025-10-15T21:25:54,627 Building wheels for collected packages: unifrac
2025-10-15T21:25:54,631   Created temporary directory: /tmp/pip-wheel-ezhdz54x
2025-10-15T21:25:54,632   Destination directory: /tmp/pip-wheel-ezhdz54x
2025-10-15T21:25:54,634   Building wheel for unifrac (pyproject.toml): started
2025-10-15T21:25:54,635   Running command Building wheel for unifrac (pyproject.toml)
2025-10-15T21:25:56,250   running bdist_wheel
2025-10-15T21:25:56,281   running build
2025-10-15T21:25:56,282   running build_py
2025-10-15T21:25:56,296   creating build/lib.linux-armv7l-cpython-311/unifrac
2025-10-15T21:25:56,298   copying unifrac/_meta.py -> build/lib.linux-armv7l-cpython-311/unifrac
2025-10-15T21:25:56,300   copying unifrac/__init__.py -> build/lib.linux-armv7l-cpython-311/unifrac
2025-10-15T21:25:56,302   copying unifrac/_methods.py -> build/lib.linux-armv7l-cpython-311/unifrac
2025-10-15T21:25:56,307   creating build/lib.linux-armv7l-cpython-311/unifrac/tests
2025-10-15T21:25:56,308   copying unifrac/tests/test_methods.py -> build/lib.linux-armv7l-cpython-311/unifrac/tests
2025-10-15T21:25:56,311   copying unifrac/tests/test_api.py -> build/lib.linux-armv7l-cpython-311/unifrac/tests
2025-10-15T21:25:56,314   copying unifrac/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/unifrac/tests
2025-10-15T21:25:56,318   creating build/lib.linux-armv7l-cpython-311/unifrac/tests/data
2025-10-15T21:25:56,319   copying unifrac/tests/data/t1.newick -> build/lib.linux-armv7l-cpython-311/unifrac/tests/data
2025-10-15T21:25:56,321   copying unifrac/tests/data/crawford.tre -> build/lib.linux-armv7l-cpython-311/unifrac/tests/data
2025-10-15T21:25:56,324   copying unifrac/tests/data/crawford.biom -> build/lib.linux-armv7l-cpython-311/unifrac/tests/data
2025-10-15T21:25:56,328   copying unifrac/tests/data/test.faith.exp -> build/lib.linux-armv7l-cpython-311/unifrac/tests/data
2025-10-15T21:25:56,330   copying unifrac/tests/data/e2.biom -> build/lib.linux-armv7l-cpython-311/unifrac/tests/data
2025-10-15T21:25:56,333   copying unifrac/tests/data/crawford.group.tsv -> build/lib.linux-armv7l-cpython-311/unifrac/tests/data
2025-10-15T21:25:56,336   copying unifrac/tests/data/t2.newick -> build/lib.linux-armv7l-cpython-311/unifrac/tests/data
2025-10-15T21:25:56,338   copying unifrac/tests/data/e1.biom -> build/lib.linux-armv7l-cpython-311/unifrac/tests/data
2025-10-15T21:25:56,341   running build_ext
2025-10-15T21:25:56,342   Compiling SSU
2025-10-15T21:25:56,350   Traceback (most recent call last):
2025-10-15T21:25:56,350     File "/usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
2025-10-15T21:25:56,351       main()
2025-10-15T21:25:56,351     File "/usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
2025-10-15T21:25:56,352       json_out['return_val'] = hook(**hook_input['kwargs'])
2025-10-15T21:25:56,352                                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-10-15T21:25:56,353     File "/usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 251, in build_wheel
2025-10-15T21:25:56,353       return _build_backend().build_wheel(wheel_directory, config_settings,
2025-10-15T21:25:56,354              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-10-15T21:25:56,354     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 435, in build_wheel
2025-10-15T21:25:56,355       return _build(['bdist_wheel', '--dist-info-dir', str(metadata_directory)])
2025-10-15T21:25:56,355              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-10-15T21:25:56,356     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 423, in _build
2025-10-15T21:25:56,356       return self._build_with_temp_dir(
2025-10-15T21:25:56,357              ^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-10-15T21:25:56,357     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 404, in _build_with_temp_dir
2025-10-15T21:25:56,358       self.run_setup()
2025-10-15T21:25:56,359     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 317, in run_setup
2025-10-15T21:25:56,359       exec(code, locals())
2025-10-15T21:25:56,360     File "<string>", line 93, in <module>
2025-10-15T21:25:56,360     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/__init__.py", line 115, in setup
2025-10-15T21:25:56,361       return distutils.core.setup(**attrs)
2025-10-15T21:25:56,361              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2025-10-15T21:25:56,362     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 186, in setup
2025-10-15T21:25:56,362       return run_commands(dist)
2025-10-15T21:25:56,363              ^^^^^^^^^^^^^^^^^^
2025-10-15T21:25:56,364     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands
2025-10-15T21:25:56,364       dist.run_commands()
2025-10-15T21:25:56,365     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands
2025-10-15T21:25:56,365       self.run_command(cmd)
2025-10-15T21:25:56,366     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-10-15T21:25:56,366       super().run_command(command)
2025-10-15T21:25:56,367     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-10-15T21:25:56,368       cmd_obj.run()
2025-10-15T21:25:56,368     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run
2025-10-15T21:25:56,369       self.run_command("build")
2025-10-15T21:25:56,369     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command
2025-10-15T21:25:56,370       self.distribution.run_command(command)
2025-10-15T21:25:56,370     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-10-15T21:25:56,371       super().run_command(command)
2025-10-15T21:25:56,372     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-10-15T21:25:56,372       cmd_obj.run()
2025-10-15T21:25:56,373     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/command/build.py", line 135, in run
2025-10-15T21:25:56,374       self.run_command(cmd_name)
2025-10-15T21:25:56,375     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command
2025-10-15T21:25:56,376       self.distribution.run_command(command)
2025-10-15T21:25:56,376     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1102, in run_command
2025-10-15T21:25:56,377       super().run_command(command)
2025-10-15T21:25:56,378     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command
2025-10-15T21:25:56,378       cmd_obj.run()
2025-10-15T21:25:56,379     File "<string>", line 57, in run
2025-10-15T21:25:56,380     File "<string>", line 61, in run_compile_ssu
2025-10-15T21:25:56,381     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 384, in execute
2025-10-15T21:25:56,381       util.execute(func, args, msg, dry_run=self.dry_run)
2025-10-15T21:25:56,382     File "/tmp/pip-build-env-2gctqdy0/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/util.py", line 334, in execute
2025-10-15T21:25:56,383       func(*args)
2025-10-15T21:25:56,384     File "<string>", line 46, in compile_ssu
2025-10-15T21:25:56,385   TypeError: unsupported operand type(s) for +: 'NoneType' and 'str'
2025-10-15T21:25:56,539   ERROR: [present-rich] Building wheel for unifrac (pyproject.toml) exited with 1
2025-10-15T21:25:56,552   [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpop_z3p15[/]
2025-10-15T21:25:56,553   [bold magenta]cwd[/]: /tmp/pip-wheel-wx3ue562/unifrac_00c3404c3da441f99a2f8d4a2ce43f58
2025-10-15T21:25:56,554   Building wheel for unifrac (pyproject.toml): finished with status 'error'
2025-10-15T21:25:56,556   ERROR: Failed building wheel for unifrac
2025-10-15T21:25:56,558 Failed to build unifrac
2025-10-15T21:25:56,559 ERROR: Failed to build one or more wheels
2025-10-15T21:25:56,561 Exception information:
2025-10-15T21:25:56,561 Traceback (most recent call last):
2025-10-15T21:25:56,561   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper
2025-10-15T21:25:56,561     status = run_func(*args)
2025-10-15T21:25:56,561              ^^^^^^^^^^^^^^^
2025-10-15T21:25:56,561   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper
2025-10-15T21:25:56,561     return func(self, options, args)
2025-10-15T21:25:56,561            ^^^^^^^^^^^^^^^^^^^^^^^^^
2025-10-15T21:25:56,561   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 201, in run
2025-10-15T21:25:56,561     raise CommandError("Failed to build one or more wheels")
2025-10-15T21:25:56,561 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-10-15T21:25:56,565 Removed build tracker: '/tmp/pip-build-tracker-ilq5zwt_'