2025-10-16T00:27:48,747 Created temporary directory: /tmp/pip-ephem-wheel-cache-wxfvtgug 2025-10-16T00:27:48,748 Created temporary directory: /tmp/pip-build-tracker-inroaxn9 2025-10-16T00:27:48,749 Initialized build tracking at /tmp/pip-build-tracker-inroaxn9 2025-10-16T00:27:48,749 Created build tracker: /tmp/pip-build-tracker-inroaxn9 2025-10-16T00:27:48,750 Entered build tracker: /tmp/pip-build-tracker-inroaxn9 2025-10-16T00:27:48,751 Created temporary directory: /tmp/pip-wheel-woi79xj7 2025-10-16T00:27:48,754 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-16T00:27:48,756 Created temporary directory: /tmp/pip-ephem-wheel-cache-ou20x8tr 2025-10-16T00:27:48,791 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-16T00:27:48,795 2 location(s) to search for versions of fastpdb: 2025-10-16T00:27:48,795 * https://pypi.org/simple/fastpdb/ 2025-10-16T00:27:48,795 * https://www.piwheels.org/simple/fastpdb/ 2025-10-16T00:27:48,795 Fetching project page and analyzing links: https://pypi.org/simple/fastpdb/ 2025-10-16T00:27:48,796 Getting page https://pypi.org/simple/fastpdb/ 2025-10-16T00:27:48,798 Found index url https://pypi.org/simple 2025-10-16T00:27:49,022 Fetched page https://pypi.org/simple/fastpdb/ as application/vnd.pypi.simple.v1+json 2025-10-16T00:27:49,039 Skipping link: No binaries permitted for fastpdb: 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2025-10-16T00:27:49,047 Found link https://files.pythonhosted.org/packages/0f/45/c89dbf394135a55b54f740830ff14eaf1be68803017bfa6f6d9baa6f927b/fastpdb-1.0.0.tar.gz (from https://pypi.org/simple/fastpdb/), version: 1.0.0 2025-10-16T00:27:49,047 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/9c/f7/afd37eb4ffbb2d5e1311896d32f4b2aa2b2eedd1d753cc93adb8c4e417c2/fastpdb-1.0.1-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,048 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/04/d0/694607633d629c9c7e7fb6fdb24ac7302afd80b3ee3fa0f4ddb14ef7c3ed/fastpdb-1.0.1-cp310-cp310-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,048 Skipping link: No binaries permitted for fastpdb: 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https://files.pythonhosted.org/packages/d7/47/1881c2c4bb10f9e641ca665a60b21cae17269c82b18a677e98868c7015b5/fastpdb-1.0.1-cp38-none-win_amd64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,051 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/b2/1b/21fb459bb91ff8f9fd2885029a66811e4c6b6e7f05db1bff0c480f7f38dd/fastpdb-1.0.1-cp39-cp39-macosx_10_7_x86_64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,051 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/c5/27/13c5b806342d0969548e8cba763db77a9cfdc3c322436e29ff3f857332bf/fastpdb-1.0.1-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,052 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/9d/9d/d22244751368b00c696dc2f814e2c6e8d53f3d5db89c56ccf409fd35d8a4/fastpdb-1.0.1-cp39-none-win_amd64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,053 Found link https://files.pythonhosted.org/packages/23/03/8e27897cfe35075a19925847793cc49ed1f24e2ceab7d49fd4b14beb6b2e/fastpdb-1.0.1.tar.gz (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7), version: 1.0.1 2025-10-16T00:27:49,053 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/45/72/83b8814876e7841bfafb60c90a0d8fdee183c8e9665970aca19f5d68f2c5/fastpdb-1.1.0-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,054 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/8d/e3/026e185d752f85aa2df944d98dbdb00370330dd1c03ec914a58ab37f90fd/fastpdb-1.1.0-cp310-cp310-manylinux_2_34_x86_64.whl (from 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https://files.pythonhosted.org/packages/35/82/988b20a3f5dd5a1f6e2af7ba6d1bce79e4489e33b59f3d2aebff6a512c7c/fastpdb-1.1.0-cp39-none-win_amd64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,059 Found link https://files.pythonhosted.org/packages/02/7a/16e28327b66721801ce20babbc2956b2383474eb19117e0bbb53c1a4d479/fastpdb-1.1.0.tar.gz (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7), version: 1.1.0 2025-10-16T00:27:49,060 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/a3/2e/56ed1f5300107402d034d68dc36a34a73be94ec4164fa24703104c3181d7/fastpdb-1.2.0-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,060 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/35/a3/f1ad351fdf75134f5726563bcf3f3b089a63a4c3eee5974f3b066fd14aa9/fastpdb-1.2.0-cp310-cp310-manylinux_2_34_x86_64.whl (from 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fastpdb: https://files.pythonhosted.org/packages/25/1f/da5cec2f019a21eb16854ab42b833a3404bf251b42eee676826a203d7fc5/fastpdb-1.3.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,076 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/3a/2c/0487061795e4778dd015e9a13288f42bd074fe4192f6587140e93f642f8e/fastpdb-1.3.1-cp311-cp311-manylinux_2_34_x86_64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,076 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/07/e3/b41df10e96d1ab1845dfbf4204b5f3c685167d01055320cf33f78f9daefe/fastpdb-1.3.1-cp311-none-win_amd64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,077 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/27/ec/987fd8c94ccf19291c748fbdd630922797c7feaae434d3b51cf59fd3e75c/fastpdb-1.3.1-cp312-cp312-macosx_10_12_x86_64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,078 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/14/bd/db7f03a61767d215ace3d412f8384ab44e8d75b1cd75bc1d8e6e9d0fbe7e/fastpdb-1.3.1-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,078 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/f1/ef/09e9fca2908d600de9a4b08c28f2819a7ef3dbfbcd4c2e8493bfb0eb2bdd/fastpdb-1.3.1-cp312-cp312-manylinux_2_34_x86_64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,079 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/1a/f3/a775bad4eb0bd4974dbebb7901c1764658881eeb847339ec1be733849b61/fastpdb-1.3.1-cp312-none-win_amd64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,080 Found link https://files.pythonhosted.org/packages/90/61/0d4d355944c19cb64a3fb7ec763c3c1823055d4cc374c26adaeb03bd4c75/fastpdb-1.3.1.tar.gz (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7), version: 1.3.1 2025-10-16T00:27:49,081 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/92/20/730f025b1198b2d2ee5ff55d4a207196db47b26d576f09aa62236f70a746/fastpdb-1.3.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,081 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/fe/19/33ab6c7f0aacd9750c51886623fef346665abcbfdc884423e053171bd20a/fastpdb-1.3.2-cp310-cp310-manylinux_2_34_x86_64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,082 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/ea/10/7066bb0346c17d404aa9518d85eddd9eee47ca876238ba846d2f22e2e0c7/fastpdb-1.3.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,083 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/2c/07/3fc583a714294d1acbf1777ed2be77ce4aac267b6f51ec790c739be8e69b/fastpdb-1.3.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,083 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/1c/12/6fbcd263acbe980417d91339618ddd19a04f1ee9f219bd3e273570170754/fastpdb-1.3.2-cp311-cp311-manylinux_2_34_x86_64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,084 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/a9/bc/73dfd89622f4981a03da3dbc9dcf305297234430833727492d87b3394378/fastpdb-1.3.2-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,084 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/5d/28/434abc90f63c607791e767e24dd1cc7dcb88a18bb7e3a332c446f224a9b6/fastpdb-1.3.2-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,085 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/a9/06/87cb69eacdfbd7e429a73c29cb65d5345388f7e5143f11765514b3f3e911/fastpdb-1.3.2-cp312-cp312-manylinux_2_34_x86_64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,085 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/8f/40/353168748592f11ef3808c97a006dc9f6322cc156df99efcd7ee11e50600/fastpdb-1.3.2-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,086 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/a0/85/c3c3985f3a814de969561ba07c715411105c969ec791cbd31bbd35f85c21/fastpdb-1.3.2-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,086 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/a5/e2/f9961726ba2b20f83a15ca4d40c1f1c66f66520b6042d7baf5ef09e2d0c7/fastpdb-1.3.2-cp313-cp313-manylinux_2_34_x86_64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,087 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/f2/55/f13c70bdfbd415ea8fa0044e56c5322447da7da7d3d69e463db1034c9e8d/fastpdb-1.3.2-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,088 Found link https://files.pythonhosted.org/packages/c3/7e/53ed69fd217d1c26d661caa2381bc80d4d966f33fe38e23f9ab9787598ea/fastpdb-1.3.2.tar.gz (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7), version: 1.3.2 2025-10-16T00:27:49,089 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/b3/5a/5ffb286c2592eb2f413b66e9936ef7b47e9a3d5cdb3edc642e85d9a71b70/fastpdb-1.3.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,089 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/64/18/9b33ff3d9a4e9c7e9e8d5cb7a67ef7c2aa2c012487b740e1bebbd0ff1463/fastpdb-1.3.3-cp310-cp310-manylinux_2_34_x86_64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,090 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/9d/bd/07ef90bf1e58ee9c1e10d85efd5b357c9a7a7ececd4312cb9ac9357e4368/fastpdb-1.3.3-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,090 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/3e/7b/15e512f2f0bc91f0d5fee9c0ea1678ef526c6e14e78e0e670911514943ed/fastpdb-1.3.3-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,091 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/a8/56/98dcafe1a951fff635f7e46c8385ce95ae0bb7fb82017497ffa7a9b435b4/fastpdb-1.3.3-cp311-cp311-manylinux_2_34_x86_64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,092 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/b0/9c/0cbc1b77c440d983963c313afe55f69cb7d7be9cb9ac5ba7f20b08e7d0db/fastpdb-1.3.3-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,092 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/a1/cc/7ad17f5dc27c61b76eda8e512e398dbd8efcb3d5ea9e07f8055e0b8b63f9/fastpdb-1.3.3-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,093 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/86/99/123f206acf75648cb8f8316889966095d023f6717231d1c71b296d8ebcf0/fastpdb-1.3.3-cp312-cp312-manylinux_2_34_x86_64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,093 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/ee/2d/eac4b65c0e927aa2f300e6849e7a3865351e51e6f7762674d3ca4732332d/fastpdb-1.3.3-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,094 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/12/11/dd9302a1cdfe0c6a3476aef9e877f65c6450c9e492f644557a9e7b13f6f2/fastpdb-1.3.3-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,094 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/9d/7a/9a48ac419ec2342a4a11c759356ec958df051f0be86cc346e6e2d6bbf5e1/fastpdb-1.3.3-cp313-cp313-manylinux_2_34_x86_64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,095 Skipping link: No binaries permitted for fastpdb: https://files.pythonhosted.org/packages/f6/0f/aa374dc3a535d5b621748fac905079a1e7760668c572d424c8b95a9bb95c/fastpdb-1.3.3-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,096 Found link https://files.pythonhosted.org/packages/9b/0e/21f7131d90e8b0d20d2a78990d20b4f9e549973e6da10b58f4231aa52f96/fastpdb-1.3.3.tar.gz (from https://pypi.org/simple/fastpdb/) (requires-python:>=3.7), version: 1.3.3 2025-10-16T00:27:49,097 Fetching project page and analyzing links: https://www.piwheels.org/simple/fastpdb/ 2025-10-16T00:27:49,098 Getting page https://www.piwheels.org/simple/fastpdb/ 2025-10-16T00:27:49,099 Found index url https://www.piwheels.org/simple 2025-10-16T00:27:49,265 Fetched page https://www.piwheels.org/simple/fastpdb/ as text/html 2025-10-16T00:27:49,273 Skipping link: No binaries permitted for fastpdb: https://www.piwheels.org/simple/fastpdb/fastpdb-1.3.3-cp39-cp39-linux_armv6l.whl#sha256=49d965ffafc9224a6d05468de129afba7363e3a08cf7bfedbd1c2eeb0a987b3a (from https://www.piwheels.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,274 Skipping link: No binaries permitted for fastpdb: https://www.piwheels.org/simple/fastpdb/fastpdb-1.3.3-cp39-cp39-linux_armv7l.whl#sha256=49d965ffafc9224a6d05468de129afba7363e3a08cf7bfedbd1c2eeb0a987b3a (from https://www.piwheels.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,274 Skipping link: No binaries permitted for fastpdb: https://www.piwheels.org/simple/fastpdb/fastpdb-1.3.2-cp39-cp39-linux_armv6l.whl#sha256=15b18e9da67762dda0f089bc090366febcfa603ed41a3a0bb72471abd8eee0a7 (from https://www.piwheels.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,275 Skipping link: No binaries permitted for fastpdb: 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https://archive1.piwheels.org/simple/fastpdb/fastpdb-1.3.0-cp311-cp311-linux_armv6l.whl#sha256=23add1265b1136398ee333eee053719b46780086cad760d606276ceefa297cb4 (from https://www.piwheels.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,281 Skipping link: No binaries permitted for fastpdb: https://archive1.piwheels.org/simple/fastpdb/fastpdb-1.3.0-cp311-cp311-linux_armv7l.whl#sha256=23add1265b1136398ee333eee053719b46780086cad760d606276ceefa297cb4 (from https://www.piwheels.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,281 Skipping link: No binaries permitted for fastpdb: https://archive1.piwheels.org/simple/fastpdb/fastpdb-1.3.0-cp37-cp37m-linux_armv6l.whl#sha256=2ece23441fa0ffae6c101d2ffa15d1ff0c1af4ea3b0f36f06cb8f25f24611fb5 (from https://www.piwheels.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,282 Skipping link: No binaries permitted for fastpdb: https://archive1.piwheels.org/simple/fastpdb/fastpdb-1.3.0-cp37-cp37m-linux_armv7l.whl#sha256=2ece23441fa0ffae6c101d2ffa15d1ff0c1af4ea3b0f36f06cb8f25f24611fb5 (from https://www.piwheels.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,282 Skipping link: No binaries permitted for fastpdb: https://archive1.piwheels.org/simple/fastpdb/fastpdb-1.3.0-cp39-cp39-linux_armv6l.whl#sha256=b26177c3553398821171e8dac461a0edde4d69865f710fcc86046e715821bff9 (from https://www.piwheels.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,283 Skipping link: No binaries permitted for fastpdb: https://archive1.piwheels.org/simple/fastpdb/fastpdb-1.3.0-cp39-cp39-linux_armv7l.whl#sha256=b26177c3553398821171e8dac461a0edde4d69865f710fcc86046e715821bff9 (from https://www.piwheels.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,283 Skipping link: No binaries permitted for fastpdb: https://archive1.piwheels.org/simple/fastpdb/fastpdb-1.2.0-cp311-cp311-linux_armv6l.whl#sha256=7fc7824ecca4770d951586deb32bfc5384b0c996fe46643422a1bac3a31527c3 (from https://www.piwheels.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,284 Skipping link: No binaries permitted for fastpdb: https://archive1.piwheels.org/simple/fastpdb/fastpdb-1.2.0-cp311-cp311-linux_armv7l.whl#sha256=7fc7824ecca4770d951586deb32bfc5384b0c996fe46643422a1bac3a31527c3 (from https://www.piwheels.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,284 Skipping link: No binaries permitted for fastpdb: https://archive1.piwheels.org/simple/fastpdb/fastpdb-1.0.1-cp311-cp311-linux_armv6l.whl#sha256=42fe82c9c9b4118ca35290f6eb7cf1e36087e5a5b422a6c81d764faa5c709473 (from https://www.piwheels.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,285 Skipping link: No binaries permitted for fastpdb: https://archive1.piwheels.org/simple/fastpdb/fastpdb-1.0.1-cp311-cp311-linux_armv7l.whl#sha256=42fe82c9c9b4118ca35290f6eb7cf1e36087e5a5b422a6c81d764faa5c709473 (from https://www.piwheels.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,285 Skipping link: No binaries permitted for fastpdb: https://archive1.piwheels.org/simple/fastpdb/fastpdb-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=1233008ee1a66ee4524f64ad91b33e83b1b279188da4966c308725b036ce927e (from https://www.piwheels.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,286 Skipping link: No binaries permitted for fastpdb: https://archive1.piwheels.org/simple/fastpdb/fastpdb-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=1233008ee1a66ee4524f64ad91b33e83b1b279188da4966c308725b036ce927e (from https://www.piwheels.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,287 Skipping link: No binaries permitted for fastpdb: https://archive1.piwheels.org/simple/fastpdb/fastpdb-0.1.0-cp311-cp311-linux_armv6l.whl#sha256=93da2b68748d1e4f852bbb8e7db36b9bb95e4e68e52a93b600cc2786a8ee2080 (from https://www.piwheels.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,287 Skipping link: No binaries permitted for fastpdb: https://archive1.piwheels.org/simple/fastpdb/fastpdb-0.1.0-cp311-cp311-linux_armv7l.whl#sha256=93da2b68748d1e4f852bbb8e7db36b9bb95e4e68e52a93b600cc2786a8ee2080 (from https://www.piwheels.org/simple/fastpdb/) (requires-python:>=3.7) 2025-10-16T00:27:49,288 Skipping link: not a file: https://www.piwheels.org/simple/fastpdb/ 2025-10-16T00:27:49,288 Skipping link: not a file: https://pypi.org/simple/fastpdb/ 2025-10-16T00:27:49,308 Given no hashes to check 1 links for project 'fastpdb': discarding no candidates 2025-10-16T00:27:49,326 Collecting fastpdb==1.3.3 2025-10-16T00:27:49,328 Created temporary directory: /tmp/pip-unpack-s5v7uxnw 2025-10-16T00:27:49,550 Downloading fastpdb-1.3.3.tar.gz (2.9 MB) 2025-10-16T00:27:50,326 Added fastpdb==1.3.3 from https://files.pythonhosted.org/packages/9b/0e/21f7131d90e8b0d20d2a78990d20b4f9e549973e6da10b58f4231aa52f96/fastpdb-1.3.3.tar.gz to build tracker '/tmp/pip-build-tracker-inroaxn9' 2025-10-16T00:27:50,332 Created temporary directory: /tmp/pip-build-env-jz48p316 2025-10-16T00:27:50,336 Installing build dependencies: started 2025-10-16T00:27:50,338 Running command pip subprocess to install build dependencies 2025-10-16T00:27:51,557 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-10-16T00:27:52,460 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-16T00:27:52,484 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-16T00:27:54,189 Collecting maturin<2.0,>=1.0 2025-10-16T00:27:54,607 Using cached https://www.piwheels.org/simple/maturin/maturin-1.9.6-cp311-cp311-linux_armv7l.whl (5.8 MB) 2025-10-16T00:27:55,717 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-10-16T00:27:55,725 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-10-16T00:27:55,732 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-10-16T00:27:55,740 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-10-16T00:27:55,747 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-10-16T00:27:56,371 Collecting numpy<1.27,>=1.26 2025-10-16T00:27:56,770 Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp311-cp311-linux_armv7l.whl (5.6 MB) 2025-10-16T00:27:59,744 Installing collected packages: numpy, maturin 2025-10-16T00:28:08,132 Creating /tmp/pip-build-env-jz48p316/overlay/local/bin 2025-10-16T00:28:08,134 changing mode of /tmp/pip-build-env-jz48p316/overlay/local/bin/f2py to 755 2025-10-16T00:28:08,599 Successfully installed maturin-1.9.6 numpy-1.26.4 2025-10-16T00:28:08,970 Installing build dependencies: finished with status 'done' 2025-10-16T00:28:08,979 Getting requirements to build wheel: started 2025-10-16T00:28:08,980 Running command Getting requirements to build wheel 2025-10-16T00:28:09,191 Getting requirements to build wheel: finished with status 'done' 2025-10-16T00:28:09,194 Created temporary directory: /tmp/pip-modern-metadata-9b737dqp 2025-10-16T00:28:09,196 Preparing metadata (pyproject.toml): started 2025-10-16T00:28:09,198 Running command Preparing metadata (pyproject.toml) 2025-10-16T00:28:10,983 🍹 Building a mixed python/rust project 2025-10-16T00:28:10,983 🔗 Found pyo3 bindings 2025-10-16T00:28:11,383 🐍 Found CPython 3.11 at /usr/bin/python3 2025-10-16T00:28:11,393 fastpdb-1.3.3.dist-info 2025-10-16T00:28:11,393 Checking for Rust toolchain.... 2025-10-16T00:28:11,394 Running `maturin pep517 write-dist-info --metadata-directory /tmp/pip-modern-metadata-9b737dqp --interpreter /usr/bin/python3` 2025-10-16T00:28:11,417 Preparing metadata (pyproject.toml): finished with status 'done' 2025-10-16T00:28:11,421 Source in /tmp/pip-wheel-woi79xj7/fastpdb_9d3340c39e944fcca1d56cf776304533 has version 1.3.3, which satisfies requirement fastpdb==1.3.3 from https://files.pythonhosted.org/packages/9b/0e/21f7131d90e8b0d20d2a78990d20b4f9e549973e6da10b58f4231aa52f96/fastpdb-1.3.3.tar.gz 2025-10-16T00:28:11,422 Removed fastpdb==1.3.3 from https://files.pythonhosted.org/packages/9b/0e/21f7131d90e8b0d20d2a78990d20b4f9e549973e6da10b58f4231aa52f96/fastpdb-1.3.3.tar.gz from build tracker '/tmp/pip-build-tracker-inroaxn9' 2025-10-16T00:28:11,428 Created temporary directory: /tmp/pip-unpack-63pvw3vh 2025-10-16T00:28:11,429 Building wheels for collected packages: fastpdb 2025-10-16T00:28:11,433 Created temporary directory: /tmp/pip-wheel-zu5l2y4w 2025-10-16T00:28:11,434 Destination directory: /tmp/pip-wheel-zu5l2y4w 2025-10-16T00:28:11,436 Building wheel for fastpdb (pyproject.toml): started 2025-10-16T00:28:11,437 Running command Building wheel for fastpdb (pyproject.toml) 2025-10-16T00:28:11,603 Running `maturin pep517 build-wheel -i /usr/bin/python3 --compatibility off` 2025-10-16T00:28:12,058 🍹 Building a mixed python/rust project 2025-10-16T00:28:12,059 🔗 Found pyo3 bindings 2025-10-16T00:28:12,462 🐍 Found CPython 3.11 at /usr/bin/python3 2025-10-16T00:28:13,034 Compiling target-lexicon v0.13.2 2025-10-16T00:28:13,035 Compiling once_cell v1.21.3 2025-10-16T00:28:13,035 Compiling autocfg v1.4.0 2025-10-16T00:28:13,036 Compiling proc-macro2 v1.0.95 2025-10-16T00:28:15,938 Compiling unicode-ident v1.0.18 2025-10-16T00:28:16,419 Compiling libc v0.2.172 2025-10-16T00:28:17,818 Compiling num-traits v0.2.19 2025-10-16T00:28:19,439 Compiling memoffset v0.9.1 2025-10-16T00:28:20,421 Compiling matrixmultiply v0.3.10 2025-10-16T00:28:21,315 Compiling pyo3-build-config v0.24.2 2025-10-16T00:28:21,431 Compiling heck v0.5.0 2025-10-16T00:28:23,289 Compiling quote v1.0.40 2025-10-16T00:28:25,531 Compiling syn v2.0.101 2025-10-16T00:28:34,044 Compiling rawpointer v0.2.1 2025-10-16T00:28:39,324 Compiling pyo3-macros-backend v0.24.2 2025-10-16T00:28:40,050 Compiling pyo3-ffi v0.24.2 2025-10-16T00:28:40,586 Compiling pyo3 v0.24.2 2025-10-16T00:28:41,878 Compiling numpy v0.24.0 2025-10-16T00:28:42,834 Compiling num-integer v0.1.46 2025-10-16T00:28:44,492 Compiling num-complex v0.4.6 2025-10-16T00:28:46,905 Compiling cfg-if v1.0.0 2025-10-16T00:28:47,127 Compiling indoc v2.0.6 2025-10-16T00:28:48,432 Compiling unindent v0.2.4 2025-10-16T00:28:50,576 Compiling rustc-hash v2.1.1 2025-10-16T00:28:51,133 Compiling ndarray v0.16.1 2025-10-16T00:29:36,159 Compiling pyo3-macros v0.24.2 2025-10-16T00:30:25,524 Compiling fastpdb v1.3.3 (/tmp/pip-wheel-woi79xj7/fastpdb_9d3340c39e944fcca1d56cf776304533) 2025-10-16T00:30:26,221 warning: use of deprecated associated function `numpy::PyArray::>::from_iter_bound`: renamed to `PyArray::from_iter` 2025-10-16T00:30:26,222 --> src/lib.rs:91:22 2025-10-16T00:30:26,223 | 2025-10-16T00:30:26,223 91 | Ok(PyArray1::from_iter_bound( 2025-10-16T00:30:26,224 | ^^^^^^^^^^^^^^^ 2025-10-16T00:30:26,225 | 2025-10-16T00:30:26,225 = note: `#[warn(deprecated)]` on by default 2025-10-16T00:30:26,231 warning: use of deprecated associated function `numpy::PyArray::>::from_iter_bound`: renamed to `PyArray::from_iter` 2025-10-16T00:30:26,231 --> src/lib.rs:99:22 2025-10-16T00:30:26,232 | 2025-10-16T00:30:26,233 99 | Ok(PyArray1::from_iter_bound( 2025-10-16T00:30:26,233 | ^^^^^^^^^^^^^^^ 2025-10-16T00:30:26,287 warning: use of deprecated method `numpy::IntoPyArray::into_pyarray_bound`: renamed to `IntoPyArray::into_pyarray` 2025-10-16T00:30:26,287 --> src/lib.rs:162:51 2025-10-16T00:30:26,288 | 2025-10-16T00:30:26,288 162 | CoordArray::Single(array) => Ok(array.into_pyarray_bound(py)), 2025-10-16T00:30:26,289 | ^^^^^^^^^^^^^^^^^^ 2025-10-16T00:30:26,293 warning: use of deprecated method `numpy::IntoPyArray::into_pyarray_bound`: renamed to `IntoPyArray::into_pyarray` 2025-10-16T00:30:26,294 --> src/lib.rs:177:50 2025-10-16T00:30:26,295 | 2025-10-16T00:30:26,295 177 | CoordArray::Multi(array) => Ok(array.into_pyarray_bound(py)) 2025-10-16T00:30:26,296 | ^^^^^^^^^^^^^^^^^^ 2025-10-16T00:30:26,361 warning: use of deprecated method `numpy::IntoPyArray::into_pyarray_bound`: renamed to `IntoPyArray::into_pyarray` 2025-10-16T00:30:26,362 --> src/lib.rs:308:22 2025-10-16T00:30:26,362 | 2025-10-16T00:30:26,363 308 | chain_id.into_pyarray_bound(py), 2025-10-16T00:30:26,364 | ^^^^^^^^^^^^^^^^^^ 2025-10-16T00:30:26,365 warning: use of deprecated method `numpy::IntoPyArray::into_pyarray_bound`: renamed to `IntoPyArray::into_pyarray` 2025-10-16T00:30:26,366 --> src/lib.rs:309:20 2025-10-16T00:30:26,366 | 2025-10-16T00:30:26,367 309 | res_id.into_pyarray_bound(py), 2025-10-16T00:30:26,367 | ^^^^^^^^^^^^^^^^^^ 2025-10-16T00:30:26,369 warning: use of deprecated method `numpy::IntoPyArray::into_pyarray_bound`: renamed to `IntoPyArray::into_pyarray` 2025-10-16T00:30:26,369 --> src/lib.rs:310:22 2025-10-16T00:30:26,370 | 2025-10-16T00:30:26,371 310 | ins_code.into_pyarray_bound(py), 2025-10-16T00:30:26,371 | ^^^^^^^^^^^^^^^^^^ 2025-10-16T00:30:26,373 warning: use of deprecated method `numpy::IntoPyArray::into_pyarray_bound`: renamed to `IntoPyArray::into_pyarray` 2025-10-16T00:30:26,373 --> src/lib.rs:311:22 2025-10-16T00:30:26,374 | 2025-10-16T00:30:26,374 311 | res_name.into_pyarray_bound(py), 2025-10-16T00:30:26,375 | ^^^^^^^^^^^^^^^^^^ 2025-10-16T00:30:26,376 warning: use of deprecated method `numpy::IntoPyArray::into_pyarray_bound`: renamed to `IntoPyArray::into_pyarray` 2025-10-16T00:30:26,377 --> src/lib.rs:312:20 2025-10-16T00:30:26,378 | 2025-10-16T00:30:26,378 312 | hetero.into_pyarray_bound(py), 2025-10-16T00:30:26,379 | ^^^^^^^^^^^^^^^^^^ 2025-10-16T00:30:26,380 warning: use of deprecated method `numpy::IntoPyArray::into_pyarray_bound`: renamed to `IntoPyArray::into_pyarray` 2025-10-16T00:30:26,381 --> src/lib.rs:313:23 2025-10-16T00:30:26,382 | 2025-10-16T00:30:26,383 313 | atom_name.into_pyarray_bound(py), 2025-10-16T00:30:26,383 | ^^^^^^^^^^^^^^^^^^ 2025-10-16T00:30:26,385 warning: use of deprecated method `numpy::IntoPyArray::into_pyarray_bound`: renamed to `IntoPyArray::into_pyarray` 2025-10-16T00:30:26,386 --> src/lib.rs:314:21 2025-10-16T00:30:26,387 | 2025-10-16T00:30:26,387 314 | element.into_pyarray_bound(py), 2025-10-16T00:30:26,388 | ^^^^^^^^^^^^^^^^^^ 2025-10-16T00:30:26,389 warning: use of deprecated method `numpy::IntoPyArray::into_pyarray_bound`: renamed to `IntoPyArray::into_pyarray` 2025-10-16T00:30:26,390 --> src/lib.rs:315:23 2025-10-16T00:30:26,391 | 2025-10-16T00:30:26,391 315 | altloc_id.into_pyarray_bound(py), 2025-10-16T00:30:26,392 | ^^^^^^^^^^^^^^^^^^ 2025-10-16T00:30:26,393 warning: use of deprecated method `numpy::IntoPyArray::into_pyarray_bound`: renamed to `IntoPyArray::into_pyarray` 2025-10-16T00:30:26,394 --> src/lib.rs:316:49 2025-10-16T00:30:26,395 | 2025-10-16T00:30:26,396 316 | if include_atom_id { Some(atom_id.into_pyarray_bound(py)) } else {None}, 2025-10-16T00:30:26,396 | ^^^^^^^^^^^^^^^^^^ 2025-10-16T00:30:26,398 warning: use of deprecated method `numpy::IntoPyArray::into_pyarray_bound`: renamed to `IntoPyArray::into_pyarray` 2025-10-16T00:30:26,398 --> src/lib.rs:317:50 2025-10-16T00:30:26,399 | 2025-10-16T00:30:26,400 317 | if include_b_factor { Some(b_factor.into_pyarray_bound(py)) } else {None}, 2025-10-16T00:30:26,401 | ^^^^^^^^^^^^^^^^^^ 2025-10-16T00:30:26,402 warning: use of deprecated method `numpy::IntoPyArray::into_pyarray_bound`: renamed to `IntoPyArray::into_pyarray` 2025-10-16T00:30:26,403 --> src/lib.rs:318:51 2025-10-16T00:30:26,403 | 2025-10-16T00:30:26,404 318 | if include_occupancy { Some(occupancy.into_pyarray_bound(py)) } else {None}, 2025-10-16T00:30:26,404 | ^^^^^^^^^^^^^^^^^^ 2025-10-16T00:30:26,406 warning: use of deprecated method `numpy::IntoPyArray::into_pyarray_bound`: renamed to `IntoPyArray::into_pyarray` 2025-10-16T00:30:26,406 --> src/lib.rs:319:48 2025-10-16T00:30:26,407 | 2025-10-16T00:30:26,407 319 | if include_charge { Some(charge.into_pyarray_bound(py)) } else {None}, 2025-10-16T00:30:26,408 | ^^^^^^^^^^^^^^^^^^ 2025-10-16T00:30:26,416 warning: use of deprecated method `numpy::IntoPyArray::into_pyarray_bound`: renamed to `IntoPyArray::into_pyarray` 2025-10-16T00:30:26,416 --> src/lib.rs:366:23 2025-10-16T00:30:26,417 | 2025-10-16T00:30:26,418 366 | Ok(bond_array.into_pyarray_bound(py)) 2025-10-16T00:30:26,418 | ^^^^^^^^^^^^^^^^^^ 2025-10-16T00:30:26,850 warning: use of deprecated method `numpy::ndarray::impl_methods::>::into_shape`: Use `.into_shape_with_order()` or `.to_shape()` 2025-10-16T00:30:26,851 --> src/lib.rs:579:45 2025-10-16T00:30:26,852 | 2025-10-16T00:30:26,852 579 | CoordArray::Multi(coord.into_shape((self.model_start_i.len(), length, 3)) 2025-10-16T00:30:26,853 | ^^^^^^^^^^ 2025-10-16T00:30:36,573 warning: `fastpdb` (lib) generated 18 warnings 2025-10-16T00:30:36,574 Finished `release` profile [optimized] target(s) in 2m 23s 2025-10-16T00:30:37,008 📦 Built wheel for CPython 3.11 to /tmp/pip-wheel-woi79xj7/fastpdb_9d3340c39e944fcca1d56cf776304533/target/wheels/fastpdb-1.3.3-cp311-cp311-linux_armv7l.whl 2025-10-16T00:30:37,010 /tmp/pip-wheel-woi79xj7/fastpdb_9d3340c39e944fcca1d56cf776304533/target/wheels/fastpdb-1.3.3-cp311-cp311-linux_armv7l.whl 2025-10-16T00:30:37,042 Building wheel for fastpdb (pyproject.toml): finished with status 'done' 2025-10-16T00:30:37,051 Created wheel for fastpdb: filename=fastpdb-1.3.3-cp311-cp311-linux_armv7l.whl size=387209 sha256=35c1d8c3585e464a2c8d366ecd995d84594f4234f2b93f3061a396437ee6d6f4 2025-10-16T00:30:37,053 Stored in directory: /tmp/pip-ephem-wheel-cache-ou20x8tr/wheels/a8/97/f1/002059d56edf12ec203592dafa95626c65076e8efd2f064257 2025-10-16T00:30:37,064 Successfully built fastpdb 2025-10-16T00:30:37,079 Removed build tracker: '/tmp/pip-build-tracker-inroaxn9'