2025-10-16T09:07:01,836 Created temporary directory: /tmp/pip-ephem-wheel-cache-pfa1yldf 2025-10-16T09:07:01,838 Created temporary directory: /tmp/pip-build-tracker-moh2yr5m 2025-10-16T09:07:01,839 Initialized build tracking at /tmp/pip-build-tracker-moh2yr5m 2025-10-16T09:07:01,839 Created build tracker: /tmp/pip-build-tracker-moh2yr5m 2025-10-16T09:07:01,839 Entered build tracker: /tmp/pip-build-tracker-moh2yr5m 2025-10-16T09:07:01,840 Created temporary directory: /tmp/pip-wheel-zb2wz3ex 2025-10-16T09:07:01,843 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-16T09:07:01,845 Created temporary directory: /tmp/pip-ephem-wheel-cache-1o5yd8nb 2025-10-16T09:07:01,869 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-16T09:07:01,873 2 location(s) to search for versions of scikit-bio: 2025-10-16T09:07:01,873 * https://pypi.org/simple/scikit-bio/ 2025-10-16T09:07:01,873 * https://www.piwheels.org/simple/scikit-bio/ 2025-10-16T09:07:01,873 Fetching project page and analyzing links: https://pypi.org/simple/scikit-bio/ 2025-10-16T09:07:01,874 Getting page https://pypi.org/simple/scikit-bio/ 2025-10-16T09:07:01,876 Found index url https://pypi.org/simple 2025-10-16T09:07:02,014 Fetched page https://pypi.org/simple/scikit-bio/ as application/vnd.pypi.simple.v1+json 2025-10-16T09:07:02,024 Found link https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.0 2025-10-16T09:07:02,025 Found link https://files.pythonhosted.org/packages/91/8b/ea20137d6b84808b3dd6a7ad162dd80dcda40934428824d1ce87b8983b81/scikit-bio-0.1.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.1 2025-10-16T09:07:02,026 Found link https://files.pythonhosted.org/packages/5f/6e/adc704fa25e9789bfc17882261010320ea9c6148d9d2e28083a5e57a3e9f/scikit-bio-0.1.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.2 2025-10-16T09:07:02,027 Found link https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.3 2025-10-16T09:07:02,028 Found link https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.4 2025-10-16T09:07:02,028 Found link https://files.pythonhosted.org/packages/5f/21/c6879978a222a04f1ac1b0a535a18111c84367ee22a5c93e6c0503f57e01/scikit-bio-0.1.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.5 2025-10-16T09:07:02,029 Found link https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.0 2025-10-16T09:07:02,029 Found link https://files.pythonhosted.org/packages/7b/74/77cf9b45ea0df4d3b8c3adcbd6f59e0b0603d1a3a2fed1b1ae6365232ac6/scikit-bio-0.2.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.1 2025-10-16T09:07:02,030 Found link https://files.pythonhosted.org/packages/bd/0a/6a5906fd53616c0763c5f445b5dc42907720f344318a1f07627986d22f33/scikit-bio-0.2.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.2 2025-10-16T09:07:02,031 Found link https://files.pythonhosted.org/packages/8e/70/559566c9dbde9435360058c420a819b4e8ce844f7ebd94daec9836f4be24/scikit-bio-0.2.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.3 2025-10-16T09:07:02,031 Found link https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.0 2025-10-16T09:07:02,032 Found link https://files.pythonhosted.org/packages/12/02/81edd2941d892cb4d0144be716c341b9a6fd255046c08d1b7bd6c70a0112/scikit-bio-0.4.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.1 2025-10-16T09:07:02,033 Found link https://files.pythonhosted.org/packages/a8/87/23635a6a9b6a1abdf78ccfc1e71929570be4c4ab4004eab66da9dd4a5c6a/scikit-bio-0.4.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.2 2025-10-16T09:07:02,034 Found link https://files.pythonhosted.org/packages/95/60/f4c269a6dfaf9d027adba6a81497e5d238cf5e604f53206b4ea50ed1145f/scikit-bio-0.5.0.zip (from https://pypi.org/simple/scikit-bio/), version: 0.5.0 2025-10-16T09:07:02,034 Found link https://files.pythonhosted.org/packages/e5/7e/cf03a7e53da18ae6a847894384838e9a36a98b48909a3f347ff6077c7304/scikit-bio-0.5.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.1 2025-10-16T09:07:02,035 Found link https://files.pythonhosted.org/packages/98/ee/08995b89efccf2bf8a0307a1eb7825dceb199e64a3db24cec832c0ca0baf/scikit-bio-0.5.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.2 2025-10-16T09:07:02,035 Found link https://files.pythonhosted.org/packages/39/07/4e3bcf7a7c254154ac445684d5f646ccc4a6ce6bfc3b0cc8030136215b8a/scikit-bio-0.5.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.3 2025-10-16T09:07:02,036 Found link https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.4 2025-10-16T09:07:02,036 Found link https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.5 2025-10-16T09:07:02,037 Found link https://files.pythonhosted.org/packages/66/b0/054ef21e024d24422882958072973cd192b492e004a3ce4e9614ef173d9b/scikit-bio-0.5.6.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.6 2025-10-16T09:07:02,038 Found link https://files.pythonhosted.org/packages/8c/a4/6ec875ba9a56f7705529aecc745ca3eaee6d90b87cd103281be7a032b412/scikit-bio-0.5.7.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.7 2025-10-16T09:07:02,038 Found link https://files.pythonhosted.org/packages/f3/5b/7ae2c3cca0cee7825a24b9c68d7ba0893ef816c41e43aeccf9ca3bc63cb7/scikit-bio-0.5.8.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.8 2025-10-16T09:07:02,039 Found link https://files.pythonhosted.org/packages/0b/ff/c3ed458b9c7b1cfdaadfcab2e015f3e21672bd57a8e216a319442e4c8a1b/scikit-bio-0.5.9.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.9 2025-10-16T09:07:02,039 Found link https://files.pythonhosted.org/packages/9d/77/531cf69c99cb398c5abf8545259b88ee256bfdb72e5972bcfdbcb9942751/scikit-bio-0.6.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.0 2025-10-16T09:07:02,040 Found link https://files.pythonhosted.org/packages/12/6b/1a01f3df88503d9a11916972f0b0c2aed13d516f159336b4bdcfcd04098a/scikit-bio-0.6.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.1 2025-10-16T09:07:02,041 Found link https://files.pythonhosted.org/packages/29/28/07326aa931c67d491d3053e2875b6c8f2904e661d9ab7c2840c3ae6b3780/scikit-bio-0.6.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.2 2025-10-16T09:07:02,041 Found link https://files.pythonhosted.org/packages/65/59/31e499edc0d045acab799b7117130e9c9de22371be57ac311f2f0b235dc4/scikit-bio-0.6.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.6.3 2025-10-16T09:07:02,042 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/59/8b/f90ee0325c7f59573bdf8d4a5a5717ca710f067a081fd46f3768600a200d/scikit_bio-0.7.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,042 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/57/c6/0864476e63935459eb4d474f210e70ca1b0aa9689bb1beccbeae582587ce/scikit_bio-0.7.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,043 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/2c/ca/087675f3fd6608142be8c53e6875a1a730e0fa1250a85421677570445839/scikit_bio-0.7.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,044 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/c8/69/da203001d9a0d4f2dc14426617e5eed76c9ff059f6c2a94023bf48e204cb/scikit_bio-0.7.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,044 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/45/97/3b928b1f075a6033326244e125f0e3a518fe75c17278359d1835ca4ccb24/scikit_bio-0.7.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,045 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/3d/66/5f238ff8fa25080d5baf82287297bfd1e6dbeab45ef3ff1b0f6e1a7c017e/scikit_bio-0.7.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,045 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f9/8b/8ef6e40a818067bdaf57fa779eadbc8ef73f333dbd50fb09daeae13de1f2/scikit_bio-0.7.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,045 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f0/66/6cb6e9ba1e67f65a27b34fcd33b457cb0fea73f93dc184ea1bf38562f012/scikit_bio-0.7.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,046 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/ad/27/e359f131018cf988f1e4f5e7380db7db43ba4202ffc9ba9e8f6cfb1988f5/scikit_bio-0.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,046 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/db/99/6b0ce81f81e2cfe06c899455b149e7f8393cd3ba9a8905efe18c36894420/scikit_bio-0.7.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,047 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/43/9b/bf339d439568a4fa0ab6e7e545c4487b1cf86e6245f98be0d922f4677ddc/scikit_bio-0.7.0-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,047 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1d/e9/7a5dd2e04bbd361907f5a1942fa4b6aeecfa453801f4c047c55b51036df2/scikit_bio-0.7.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,048 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/19/4b/b63123cf09c3375fa90cbfc02febf32cc20429a49c03d71f37febed7c52d/scikit_bio-0.7.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,048 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/f5/02/b178ca48305a230e080732dd02233e0824b1a9b41b273acf2444de116be2/scikit_bio-0.7.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,049 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/5f/a8/199cafe05bb77bf274f0a3db8f5199f4b2966db37589f9e5ec6a212c0b9c/scikit_bio-0.7.0-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,049 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/d4/31/b943fcf7d4579b4751002ad9a48e62e9f0c7db542dd440f7e3e82f50f58b/scikit_bio-0.7.0-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,050 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/e7/af/5f3452f0dce0f0a3c7ccb9f067e410b50a8d188c4fb56426f8785317333d/scikit_bio-0.7.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,051 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/7d/20/ef1d2a8accb946cc31b5b987a46d197f69d1e89bab76b5e9cb4235a355f9/scikit_bio-0.7.0-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,051 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1c/46/3f05eedb58e13c21f5ab7496e9735da2f008aa66038b268ea46138a3e48d/scikit_bio-0.7.0-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,052 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/40/e9/2f7d72ef933e9328b929295ada98ad2c5fbdc5b3c6bd2f4d886f14d4f90a/scikit_bio-0.7.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,052 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/b5/fa/3a7770c445111c6b957aba701887f22506faef8145965a6b9d2816cfd896/scikit_bio-0.7.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,053 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4e/07/e2a29ccbb31208c98ff2c7b61b00614885f781474891ebf249d85495e238/scikit_bio-0.7.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,053 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/89/15/829f7da8e5083f4d2e3dd1ef24faa6b32da2bf492547bd6d385e92fda127/scikit_bio-0.7.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,053 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4a/34/687f9e4dc73e39a56277e2aa900577fccb3c99ef28a5acc5fc258028e2ac/scikit_bio-0.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,054 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/6c/a5/75fd40c8bf70836216fffe57bdd80c78959d5cc21c23927ada892b246f3d/scikit_bio-0.7.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,055 Found link https://files.pythonhosted.org/packages/90/fe/be2d10a390ceea3a3657e77a5ebd16aa167509b10a709125f3a8e4fd663a/scikit_bio-0.7.0.tar.gz (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.9), version: 0.7.0 2025-10-16T09:07:02,056 Fetching project page and analyzing links: https://www.piwheels.org/simple/scikit-bio/ 2025-10-16T09:07:02,056 Getting page https://www.piwheels.org/simple/scikit-bio/ 2025-10-16T09:07:02,058 Found index url https://www.piwheels.org/simple 2025-10-16T09:07:02,241 Fetched page https://www.piwheels.org/simple/scikit-bio/ as text/html 2025-10-16T09:07:02,252 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.7.0-cp39-cp39-linux_armv6l.whl#sha256=0cea0da1a2ed84ffd67385927e252038821660b4c491a6dae9d0d4f859058e95 (from https://www.piwheels.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,253 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.7.0-cp39-cp39-linux_armv7l.whl#sha256=0cea0da1a2ed84ffd67385927e252038821660b4c491a6dae9d0d4f859058e95 (from https://www.piwheels.org/simple/scikit-bio/) (requires-python:>=3.9) 2025-10-16T09:07:02,254 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp311-cp311-linux_armv6l.whl#sha256=1377121c66a4fe46966e56e9145ef2a326b3ed4b8a38080cfbe361afafd8e8f2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,254 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp311-cp311-linux_armv7l.whl#sha256=1377121c66a4fe46966e56e9145ef2a326b3ed4b8a38080cfbe361afafd8e8f2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,255 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp39-cp39-linux_armv6l.whl#sha256=8beed71fd2d4c144f10b9ef761c7a68af8657d4c22e4d37cee45670a40a77a83 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,255 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp39-cp39-linux_armv7l.whl#sha256=8beed71fd2d4c144f10b9ef761c7a68af8657d4c22e4d37cee45670a40a77a83 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,256 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp313-cp313-linux_armv6l.whl#sha256=ac375c5fa6ccb09fe01c5811f3c5fa5a79019ba07cf1fe226ba166fd219bcc68 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,256 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.6.3-cp313-cp313-linux_armv7l.whl#sha256=ac375c5fa6ccb09fe01c5811f3c5fa5a79019ba07cf1fe226ba166fd219bcc68 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,257 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.2-cp39-cp39-linux_armv6l.whl#sha256=c11cd14b1aa68524f23fa412af6d5139f3023ac63212057c53649ce6a63da7b8 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,257 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.2-cp39-cp39-linux_armv7l.whl#sha256=c11cd14b1aa68524f23fa412af6d5139f3023ac63212057c53649ce6a63da7b8 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,258 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.6.2-cp313-cp313-linux_armv6l.whl#sha256=dfa1a1651ab7302bec2b83cd5529715837d36327656c6f42a3ab6a4e103275c1 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,258 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.6.2-cp313-cp313-linux_armv7l.whl#sha256=dfa1a1651ab7302bec2b83cd5529715837d36327656c6f42a3ab6a4e103275c1 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,259 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp311-cp311-linux_armv6l.whl#sha256=7657b22d76cf0c3a508f91d921cbfc5431049f4477456d8b26c9a24a9ebb7190 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,259 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp311-cp311-linux_armv7l.whl#sha256=7657b22d76cf0c3a508f91d921cbfc5431049f4477456d8b26c9a24a9ebb7190 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,260 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp37-cp37m-linux_armv6l.whl#sha256=2dfb82a5726354b8f83f298206e3c08373a5c7502bcd2d68eba605d3d7a63398 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,260 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp37-cp37m-linux_armv7l.whl#sha256=2dfb82a5726354b8f83f298206e3c08373a5c7502bcd2d68eba605d3d7a63398 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,261 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp39-cp39-linux_armv6l.whl#sha256=e98311cac990697fccc80b97b64ba1e25c17216e95f4ae0608c3c4084a25739d (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,262 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.1-cp39-cp39-linux_armv7l.whl#sha256=e98311cac990697fccc80b97b64ba1e25c17216e95f4ae0608c3c4084a25739d (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,262 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp311-cp311-linux_armv6l.whl#sha256=3c11c6aec89d859de926ebf1b4a4fb61ce1bcab28c1762427c042704d7ae0c9e (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,263 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp311-cp311-linux_armv7l.whl#sha256=3c11c6aec89d859de926ebf1b4a4fb61ce1bcab28c1762427c042704d7ae0c9e (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,263 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp37-cp37m-linux_armv6l.whl#sha256=bfbf0fe68e25c3d128af83db7e51b2f3c100f7cdbda1669dcdf1c51c7f18cd74 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,263 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp37-cp37m-linux_armv7l.whl#sha256=bfbf0fe68e25c3d128af83db7e51b2f3c100f7cdbda1669dcdf1c51c7f18cd74 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,264 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp39-cp39-linux_armv6l.whl#sha256=da66a4671abc7db352a7ed3975d364cba1a7adc858a10c82f32d8e6e39d007bd (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,264 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.6.0-cp39-cp39-linux_armv7l.whl#sha256=da66a4671abc7db352a7ed3975d364cba1a7adc858a10c82f32d8e6e39d007bd (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,265 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv6l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,265 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv7l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,266 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv6l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,266 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv7l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,267 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp311-cp311-linux_armv6l.whl#sha256=0d10c6c7922db15dcc5640bac5f192fdd8606fa47facd0f34eb648f9c3e049b2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,267 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp311-cp311-linux_armv7l.whl#sha256=0d10c6c7922db15dcc5640bac5f192fdd8606fa47facd0f34eb648f9c3e049b2 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,268 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv6l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,269 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv7l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,269 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv6l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,270 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv7l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,270 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv6l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,270 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv7l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,271 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv6l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,271 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv7l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,272 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv6l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,272 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv7l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2025-10-16T09:07:02,273 Skipping link: not a file: https://www.piwheels.org/simple/scikit-bio/ 2025-10-16T09:07:02,273 Skipping link: not a file: https://pypi.org/simple/scikit-bio/ 2025-10-16T09:07:02,296 Given no hashes to check 1 links for project 'scikit-bio': discarding no candidates 2025-10-16T09:07:02,314 Collecting scikit-bio==0.7.0 2025-10-16T09:07:02,317 Created temporary directory: /tmp/pip-unpack-o2t4pwy6 2025-10-16T09:07:02,533 Downloading scikit_bio-0.7.0.tar.gz (5.5 MB) 2025-10-16T09:07:05,602 Added scikit-bio==0.7.0 from https://files.pythonhosted.org/packages/90/fe/be2d10a390ceea3a3657e77a5ebd16aa167509b10a709125f3a8e4fd663a/scikit_bio-0.7.0.tar.gz to build tracker '/tmp/pip-build-tracker-moh2yr5m' 2025-10-16T09:07:05,610 Created temporary directory: /tmp/pip-build-env-_1xe0it1 2025-10-16T09:07:05,614 Installing build dependencies: started 2025-10-16T09:07:05,616 Running command pip subprocess to install build dependencies 2025-10-16T09:07:06,776 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-10-16T09:07:07,356 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-16T09:07:07,379 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-16T09:07:09,105 Collecting setuptools 2025-10-16T09:07:09,209 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-10-16T09:07:09,478 Collecting wheel 2025-10-16T09:07:09,497 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2025-10-16T09:07:10,415 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-10-16T09:07:10,423 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-10-16T09:07:10,429 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-10-16T09:07:10,436 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-10-16T09:07:10,443 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-10-16T09:07:11,054 Collecting numpy 2025-10-16T09:07:11,512 Using cached https://www.piwheels.org/simple/numpy/numpy-2.3.3-cp311-cp311-linux_armv7l.whl (6.1 MB) 2025-10-16T09:07:13,527 Collecting cython 2025-10-16T09:07:13,550 Using cached cython-3.1.4-py3-none-any.whl (1.2 MB) 2025-10-16T09:07:16,676 Installing collected packages: wheel, setuptools, numpy, cython 2025-10-16T09:07:16,919 Creating /tmp/pip-build-env-_1xe0it1/overlay/local/bin 2025-10-16T09:07:16,921 changing mode of /tmp/pip-build-env-_1xe0it1/overlay/local/bin/wheel to 755 2025-10-16T09:07:29,628 changing mode of /tmp/pip-build-env-_1xe0it1/overlay/local/bin/f2py to 755 2025-10-16T09:07:29,630 changing mode of /tmp/pip-build-env-_1xe0it1/overlay/local/bin/numpy-config to 755 2025-10-16T09:07:32,634 changing mode of /tmp/pip-build-env-_1xe0it1/overlay/local/bin/cygdb to 755 2025-10-16T09:07:32,636 changing mode of /tmp/pip-build-env-_1xe0it1/overlay/local/bin/cython to 755 2025-10-16T09:07:32,638 changing mode of /tmp/pip-build-env-_1xe0it1/overlay/local/bin/cythonize to 755 2025-10-16T09:07:32,672 Successfully installed cython-3.1.4 numpy-2.3.3 setuptools-80.9.0 wheel-0.45.1 2025-10-16T09:07:33,110 Installing build dependencies: finished with status 'done' 2025-10-16T09:07:33,117 Getting requirements to build wheel: started 2025-10-16T09:07:33,118 Running command Getting requirements to build wheel 2025-10-16T09:07:37,958 warning: skbio/alignment/_cutils.pyx:103:14: Assigning to 'float *' from 'const float *' discards const qualifier 2025-10-16T09:07:37,963 warning: skbio/alignment/_cutils.pyx:103:14: Assigning to 'double *' from 'const double *' discards const qualifier 2025-10-16T09:07:37,988 warning: skbio/alignment/_cutils.pyx:157:14: Assigning to 'float *' from 'const float *' discards const qualifier 2025-10-16T09:07:37,994 warning: skbio/alignment/_cutils.pyx:157:14: Assigning to 'double *' from 'const double *' discards const qualifier 2025-10-16T09:07:45,792 performance hint: skbio/stats/distance/_cutils.pyx:398:0: Exception check on '_dist_euclidean' will always require the GIL to be acquired. Declare '_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:07:45,792 performance hint: skbio/stats/distance/_cutils.pyx:407:0: Exception check on '_norm_euclidean' will always require the GIL to be acquired. Declare '_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:07:45,793 performance hint: skbio/stats/distance/_cutils.pyx:414:0: Exception check on '_sum' will always require the GIL to be acquired. Declare '_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:07:49,646 performance hint: skbio/stats/distance/_cutils.pyx:350:36: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:07:49,648 performance hint: skbio/stats/distance/_cutils.pyx:357:24: Exception check after calling '__pyx_fuse_0_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_0_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:07:49,653 performance hint: skbio/stats/distance/_cutils.pyx:381:35: Exception check after calling '__pyx_fuse_0_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:07:49,656 performance hint: skbio/stats/distance/_cutils.pyx:389:34: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:07:49,670 performance hint: skbio/stats/distance/_cutils.pyx:350:36: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:07:49,672 performance hint: skbio/stats/distance/_cutils.pyx:357:24: Exception check after calling '__pyx_fuse_1_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_1_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:07:49,677 performance hint: skbio/stats/distance/_cutils.pyx:381:35: Exception check after calling '__pyx_fuse_1_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:07:49,680 performance hint: skbio/stats/distance/_cutils.pyx:389:34: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:07:49,684 performance hint: skbio/stats/distance/_cutils.pyx:403:15: Use boundscheck(False) for faster access 2025-10-16T09:07:49,685 performance hint: skbio/stats/distance/_cutils.pyx:403:22: Use boundscheck(False) for faster access 2025-10-16T09:07:49,687 performance hint: skbio/stats/distance/_cutils.pyx:403:15: Use boundscheck(False) for faster access 2025-10-16T09:07:49,688 performance hint: skbio/stats/distance/_cutils.pyx:403:22: Use boundscheck(False) for faster access 2025-10-16T09:07:49,690 performance hint: skbio/stats/distance/_cutils.pyx:411:14: Use boundscheck(False) for faster access 2025-10-16T09:07:49,691 performance hint: skbio/stats/distance/_cutils.pyx:411:21: Use boundscheck(False) for faster access 2025-10-16T09:07:49,693 performance hint: skbio/stats/distance/_cutils.pyx:411:14: Use boundscheck(False) for faster access 2025-10-16T09:07:49,694 performance hint: skbio/stats/distance/_cutils.pyx:411:21: Use boundscheck(False) for faster access 2025-10-16T09:07:49,696 performance hint: skbio/stats/distance/_cutils.pyx:418:18: Use boundscheck(False) for faster access 2025-10-16T09:07:49,698 performance hint: skbio/stats/distance/_cutils.pyx:418:18: Use boundscheck(False) for faster access 2025-10-16T09:08:04,201 [1/7] Cythonizing skbio/alignment/_cutils.pyx 2025-10-16T09:08:04,201 [2/7] Cythonizing skbio/diversity/_phylogenetic.pyx 2025-10-16T09:08:04,202 [3/7] Cythonizing skbio/metadata/_intersection.pyx 2025-10-16T09:08:04,202 [4/7] Cythonizing skbio/stats/distance/_cutils.pyx 2025-10-16T09:08:04,203 [5/7] Cythonizing skbio/stats/ordination/_cutils.pyx 2025-10-16T09:08:04,203 [6/7] Cythonizing skbio/tree/_c_me.pyx 2025-10-16T09:08:04,204 [7/7] Cythonizing skbio/tree/_c_nj.pyx 2025-10-16T09:08:04,333 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-16T09:08:04,333 !! 2025-10-16T09:08:04,334 ******************************************************************************** 2025-10-16T09:08:04,335 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-16T09:08:04,336 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-16T09:08:04,337 or your builds will no longer be supported. 2025-10-16T09:08:04,338 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-16T09:08:04,339 ******************************************************************************** 2025-10-16T09:08:04,340 !! 2025-10-16T09:08:04,340 corresp(dist, value, root_dir) 2025-10-16T09:08:04,341 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-zb2wz3ex/scikit-bio_67d690fa34a24d448456ab34bba4947b/LICENSE' cannot be found 2025-10-16T09:08:04,342 return '\n'.join( 2025-10-16T09:08:04,425 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-16T09:08:04,426 !! 2025-10-16T09:08:04,427 ******************************************************************************** 2025-10-16T09:08:04,427 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-16T09:08:04,429 License :: OSI Approved :: BSD License 2025-10-16T09:08:04,430 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-16T09:08:04,430 ******************************************************************************** 2025-10-16T09:08:04,432 !! 2025-10-16T09:08:04,432 dist._finalize_license_expression() 2025-10-16T09:08:04,433 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-16T09:08:04,434 !! 2025-10-16T09:08:04,435 ******************************************************************************** 2025-10-16T09:08:04,436 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-16T09:08:04,437 License :: OSI Approved :: BSD License 2025-10-16T09:08:04,438 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-16T09:08:04,438 ******************************************************************************** 2025-10-16T09:08:04,439 !! 2025-10-16T09:08:04,439 self._finalize_license_expression() 2025-10-16T09:08:04,442 running egg_info 2025-10-16T09:08:04,450 writing scikit_bio.egg-info/PKG-INFO 2025-10-16T09:08:04,470 writing dependency_links to scikit_bio.egg-info/dependency_links.txt 2025-10-16T09:08:04,477 writing requirements to scikit_bio.egg-info/requires.txt 2025-10-16T09:08:04,478 writing top-level names to scikit_bio.egg-info/top_level.txt 2025-10-16T09:08:04,504 dependency /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-10-16T09:08:04,505 dependency /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-10-16T09:08:04,505 dependency /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-10-16T09:08:04,506 dependency /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-10-16T09:08:04,507 dependency /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-10-16T09:08:04,532 reading manifest file 'scikit_bio.egg-info/SOURCES.txt' 2025-10-16T09:08:04,653 reading manifest template 'MANIFEST.in' 2025-10-16T09:08:04,714 no previously-included directories found matching 'doc/build' 2025-10-16T09:08:04,716 no previously-included directories found matching 'doc/source/generated' 2025-10-16T09:08:04,718 no previously-included directories found matching 'web/_build' 2025-10-16T09:08:04,723 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-10-16T09:08:04,727 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2025-10-16T09:08:04,731 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-10-16T09:08:04,735 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2025-10-16T09:08:04,739 warning: no previously-included files matching '.coverage' found anywhere in distribution 2025-10-16T09:08:04,739 adding license file 'LICENSE.txt' 2025-10-16T09:08:04,780 writing manifest file 'scikit_bio.egg-info/SOURCES.txt' 2025-10-16T09:08:05,717 Getting requirements to build wheel: finished with status 'done' 2025-10-16T09:08:05,721 Created temporary directory: /tmp/pip-modern-metadata-bkljx70v 2025-10-16T09:08:05,724 Preparing metadata (pyproject.toml): started 2025-10-16T09:08:05,725 Running command Preparing metadata (pyproject.toml) 2025-10-16T09:08:10,469 warning: skbio/alignment/_cutils.pyx:103:14: Assigning to 'float *' from 'const float *' discards const qualifier 2025-10-16T09:08:10,474 warning: skbio/alignment/_cutils.pyx:103:14: Assigning to 'double *' from 'const double *' discards const qualifier 2025-10-16T09:08:10,499 warning: skbio/alignment/_cutils.pyx:157:14: Assigning to 'float *' from 'const float *' discards const qualifier 2025-10-16T09:08:10,505 warning: skbio/alignment/_cutils.pyx:157:14: Assigning to 'double *' from 'const double *' discards const qualifier 2025-10-16T09:08:25,470 performance hint: skbio/stats/distance/_cutils.pyx:398:0: Exception check on '_dist_euclidean' will always require the GIL to be acquired. Declare '_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:08:25,471 performance hint: skbio/stats/distance/_cutils.pyx:407:0: Exception check on '_norm_euclidean' will always require the GIL to be acquired. Declare '_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:08:25,471 performance hint: skbio/stats/distance/_cutils.pyx:414:0: Exception check on '_sum' will always require the GIL to be acquired. Declare '_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:08:29,649 performance hint: skbio/stats/distance/_cutils.pyx:350:36: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:08:29,652 performance hint: skbio/stats/distance/_cutils.pyx:357:24: Exception check after calling '__pyx_fuse_0_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_0_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:08:29,657 performance hint: skbio/stats/distance/_cutils.pyx:381:35: Exception check after calling '__pyx_fuse_0_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:08:29,660 performance hint: skbio/stats/distance/_cutils.pyx:389:34: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:08:29,674 performance hint: skbio/stats/distance/_cutils.pyx:350:36: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:08:29,676 performance hint: skbio/stats/distance/_cutils.pyx:357:24: Exception check after calling '__pyx_fuse_1_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_1_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:08:29,681 performance hint: skbio/stats/distance/_cutils.pyx:381:35: Exception check after calling '__pyx_fuse_1_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:08:29,684 performance hint: skbio/stats/distance/_cutils.pyx:389:34: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:08:29,688 performance hint: skbio/stats/distance/_cutils.pyx:403:15: Use boundscheck(False) for faster access 2025-10-16T09:08:29,689 performance hint: skbio/stats/distance/_cutils.pyx:403:22: Use boundscheck(False) for faster access 2025-10-16T09:08:29,691 performance hint: skbio/stats/distance/_cutils.pyx:403:15: Use boundscheck(False) for faster access 2025-10-16T09:08:29,692 performance hint: skbio/stats/distance/_cutils.pyx:403:22: Use boundscheck(False) for faster access 2025-10-16T09:08:29,694 performance hint: skbio/stats/distance/_cutils.pyx:411:14: Use boundscheck(False) for faster access 2025-10-16T09:08:29,695 performance hint: skbio/stats/distance/_cutils.pyx:411:21: Use boundscheck(False) for faster access 2025-10-16T09:08:29,697 performance hint: skbio/stats/distance/_cutils.pyx:411:14: Use boundscheck(False) for faster access 2025-10-16T09:08:29,697 performance hint: skbio/stats/distance/_cutils.pyx:411:21: Use boundscheck(False) for faster access 2025-10-16T09:08:29,700 performance hint: skbio/stats/distance/_cutils.pyx:418:18: Use boundscheck(False) for faster access 2025-10-16T09:08:29,702 performance hint: skbio/stats/distance/_cutils.pyx:418:18: Use boundscheck(False) for faster access 2025-10-16T09:08:36,657 [1/7] Cythonizing skbio/alignment/_cutils.pyx 2025-10-16T09:08:36,658 [2/7] Cythonizing skbio/metadata/_intersection.pyx 2025-10-16T09:08:36,658 [3/7] Cythonizing skbio/stats/ordination/_cutils.pyx 2025-10-16T09:08:36,658 [4/7] Cythonizing skbio/tree/_c_nj.pyx 2025-10-16T09:08:36,659 [5/7] Cythonizing skbio/diversity/_phylogenetic.pyx 2025-10-16T09:08:36,659 [6/7] Cythonizing skbio/stats/distance/_cutils.pyx 2025-10-16T09:08:36,660 [7/7] Cythonizing skbio/tree/_c_me.pyx 2025-10-16T09:08:36,749 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-16T09:08:36,750 !! 2025-10-16T09:08:36,751 ******************************************************************************** 2025-10-16T09:08:36,751 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-16T09:08:36,752 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-16T09:08:36,753 or your builds will no longer be supported. 2025-10-16T09:08:36,754 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-16T09:08:36,755 ******************************************************************************** 2025-10-16T09:08:36,756 !! 2025-10-16T09:08:36,756 corresp(dist, value, root_dir) 2025-10-16T09:08:36,757 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-zb2wz3ex/scikit-bio_67d690fa34a24d448456ab34bba4947b/LICENSE' cannot be found 2025-10-16T09:08:36,757 return '\n'.join( 2025-10-16T09:08:36,843 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-16T09:08:36,843 !! 2025-10-16T09:08:36,844 ******************************************************************************** 2025-10-16T09:08:36,845 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-16T09:08:36,846 License :: OSI Approved :: BSD License 2025-10-16T09:08:36,847 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-16T09:08:36,847 ******************************************************************************** 2025-10-16T09:08:36,848 !! 2025-10-16T09:08:36,849 dist._finalize_license_expression() 2025-10-16T09:08:36,855 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-16T09:08:36,856 !! 2025-10-16T09:08:36,857 ******************************************************************************** 2025-10-16T09:08:36,858 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-16T09:08:36,859 License :: OSI Approved :: BSD License 2025-10-16T09:08:36,860 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-16T09:08:36,861 ******************************************************************************** 2025-10-16T09:08:36,862 !! 2025-10-16T09:08:36,862 self._finalize_license_expression() 2025-10-16T09:08:36,868 running dist_info 2025-10-16T09:08:36,888 creating /tmp/pip-modern-metadata-bkljx70v/scikit_bio.egg-info 2025-10-16T09:08:36,889 writing /tmp/pip-modern-metadata-bkljx70v/scikit_bio.egg-info/PKG-INFO 2025-10-16T09:08:36,904 writing dependency_links to /tmp/pip-modern-metadata-bkljx70v/scikit_bio.egg-info/dependency_links.txt 2025-10-16T09:08:36,912 writing requirements to /tmp/pip-modern-metadata-bkljx70v/scikit_bio.egg-info/requires.txt 2025-10-16T09:08:36,913 writing top-level names to /tmp/pip-modern-metadata-bkljx70v/scikit_bio.egg-info/top_level.txt 2025-10-16T09:08:36,915 writing manifest file '/tmp/pip-modern-metadata-bkljx70v/scikit_bio.egg-info/SOURCES.txt' 2025-10-16T09:08:36,939 dependency /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-10-16T09:08:36,939 dependency /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-10-16T09:08:36,940 dependency /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-10-16T09:08:36,941 dependency /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-10-16T09:08:36,941 dependency /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-10-16T09:08:36,948 reading manifest file '/tmp/pip-modern-metadata-bkljx70v/scikit_bio.egg-info/SOURCES.txt' 2025-10-16T09:08:36,951 reading manifest template 'MANIFEST.in' 2025-10-16T09:08:37,084 no previously-included directories found matching 'doc/build' 2025-10-16T09:08:37,085 no previously-included directories found matching 'doc/source/generated' 2025-10-16T09:08:37,087 no previously-included directories found matching 'web/_build' 2025-10-16T09:08:37,090 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-10-16T09:08:37,093 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2025-10-16T09:08:37,096 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-10-16T09:08:37,098 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2025-10-16T09:08:37,101 warning: no previously-included files matching '.coverage' found anywhere in distribution 2025-10-16T09:08:37,102 adding license file 'LICENSE.txt' 2025-10-16T09:08:37,131 writing manifest file '/tmp/pip-modern-metadata-bkljx70v/scikit_bio.egg-info/SOURCES.txt' 2025-10-16T09:08:37,134 creating '/tmp/pip-modern-metadata-bkljx70v/scikit_bio-0.7.0.dist-info' 2025-10-16T09:08:38,200 Preparing metadata (pyproject.toml): finished with status 'done' 2025-10-16T09:08:38,205 Source in /tmp/pip-wheel-zb2wz3ex/scikit-bio_67d690fa34a24d448456ab34bba4947b has version 0.7.0, which satisfies requirement scikit-bio==0.7.0 from https://files.pythonhosted.org/packages/90/fe/be2d10a390ceea3a3657e77a5ebd16aa167509b10a709125f3a8e4fd663a/scikit_bio-0.7.0.tar.gz 2025-10-16T09:08:38,206 Removed scikit-bio==0.7.0 from https://files.pythonhosted.org/packages/90/fe/be2d10a390ceea3a3657e77a5ebd16aa167509b10a709125f3a8e4fd663a/scikit_bio-0.7.0.tar.gz from build tracker '/tmp/pip-build-tracker-moh2yr5m' 2025-10-16T09:08:38,213 Created temporary directory: /tmp/pip-unpack-ve6dsf3k 2025-10-16T09:08:38,214 Building wheels for collected packages: scikit-bio 2025-10-16T09:08:38,219 Created temporary directory: /tmp/pip-wheel-472df4j0 2025-10-16T09:08:38,219 Destination directory: /tmp/pip-wheel-472df4j0 2025-10-16T09:08:38,222 Building wheel for scikit-bio (pyproject.toml): started 2025-10-16T09:08:38,223 Running command Building wheel for scikit-bio (pyproject.toml) 2025-10-16T09:08:42,888 warning: skbio/alignment/_cutils.pyx:103:14: Assigning to 'float *' from 'const float *' discards const qualifier 2025-10-16T09:08:42,893 warning: skbio/alignment/_cutils.pyx:103:14: Assigning to 'double *' from 'const double *' discards const qualifier 2025-10-16T09:08:42,918 warning: skbio/alignment/_cutils.pyx:157:14: Assigning to 'float *' from 'const float *' discards const qualifier 2025-10-16T09:08:42,924 warning: skbio/alignment/_cutils.pyx:157:14: Assigning to 'double *' from 'const double *' discards const qualifier 2025-10-16T09:08:57,810 performance hint: skbio/stats/distance/_cutils.pyx:398:0: Exception check on '_dist_euclidean' will always require the GIL to be acquired. Declare '_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:08:57,811 performance hint: skbio/stats/distance/_cutils.pyx:407:0: Exception check on '_norm_euclidean' will always require the GIL to be acquired. Declare '_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:08:57,811 performance hint: skbio/stats/distance/_cutils.pyx:414:0: Exception check on '_sum' will always require the GIL to be acquired. Declare '_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:09:01,970 performance hint: skbio/stats/distance/_cutils.pyx:350:36: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:09:01,972 performance hint: skbio/stats/distance/_cutils.pyx:357:24: Exception check after calling '__pyx_fuse_0_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_0_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:09:01,978 performance hint: skbio/stats/distance/_cutils.pyx:381:35: Exception check after calling '__pyx_fuse_0_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:09:01,981 performance hint: skbio/stats/distance/_cutils.pyx:389:34: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:09:01,995 performance hint: skbio/stats/distance/_cutils.pyx:350:36: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:09:01,997 performance hint: skbio/stats/distance/_cutils.pyx:357:24: Exception check after calling '__pyx_fuse_1_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_1_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:09:02,003 performance hint: skbio/stats/distance/_cutils.pyx:381:35: Exception check after calling '__pyx_fuse_1_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:09:02,007 performance hint: skbio/stats/distance/_cutils.pyx:389:34: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2025-10-16T09:09:02,011 performance hint: skbio/stats/distance/_cutils.pyx:403:15: Use boundscheck(False) for faster access 2025-10-16T09:09:02,011 performance hint: skbio/stats/distance/_cutils.pyx:403:22: Use boundscheck(False) for faster access 2025-10-16T09:09:02,014 performance hint: skbio/stats/distance/_cutils.pyx:403:15: Use boundscheck(False) for faster access 2025-10-16T09:09:02,015 performance hint: skbio/stats/distance/_cutils.pyx:403:22: Use boundscheck(False) for faster access 2025-10-16T09:09:02,017 performance hint: skbio/stats/distance/_cutils.pyx:411:14: Use boundscheck(False) for faster access 2025-10-16T09:09:02,018 performance hint: skbio/stats/distance/_cutils.pyx:411:21: Use boundscheck(False) for faster access 2025-10-16T09:09:02,020 performance hint: skbio/stats/distance/_cutils.pyx:411:14: Use boundscheck(False) for faster access 2025-10-16T09:09:02,021 performance hint: skbio/stats/distance/_cutils.pyx:411:21: Use boundscheck(False) for faster access 2025-10-16T09:09:02,024 performance hint: skbio/stats/distance/_cutils.pyx:418:18: Use boundscheck(False) for faster access 2025-10-16T09:09:02,026 performance hint: skbio/stats/distance/_cutils.pyx:418:18: Use boundscheck(False) for faster access 2025-10-16T09:09:08,937 [1/7] Cythonizing skbio/alignment/_cutils.pyx 2025-10-16T09:09:08,938 [2/7] Cythonizing skbio/metadata/_intersection.pyx 2025-10-16T09:09:08,938 [3/7] Cythonizing skbio/stats/ordination/_cutils.pyx 2025-10-16T09:09:08,939 [4/7] Cythonizing skbio/tree/_c_nj.pyx 2025-10-16T09:09:08,939 [5/7] Cythonizing skbio/diversity/_phylogenetic.pyx 2025-10-16T09:09:08,940 [6/7] Cythonizing skbio/stats/distance/_cutils.pyx 2025-10-16T09:09:08,940 [7/7] Cythonizing skbio/tree/_c_me.pyx 2025-10-16T09:09:09,035 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-16T09:09:09,036 !! 2025-10-16T09:09:09,037 ******************************************************************************** 2025-10-16T09:09:09,038 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-16T09:09:09,039 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-16T09:09:09,040 or your builds will no longer be supported. 2025-10-16T09:09:09,041 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-16T09:09:09,041 ******************************************************************************** 2025-10-16T09:09:09,042 !! 2025-10-16T09:09:09,043 corresp(dist, value, root_dir) 2025-10-16T09:09:09,043 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-zb2wz3ex/scikit-bio_67d690fa34a24d448456ab34bba4947b/LICENSE' cannot be found 2025-10-16T09:09:09,044 return '\n'.join( 2025-10-16T09:09:09,120 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-16T09:09:09,121 !! 2025-10-16T09:09:09,122 ******************************************************************************** 2025-10-16T09:09:09,123 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-16T09:09:09,123 License :: OSI Approved :: BSD License 2025-10-16T09:09:09,124 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-16T09:09:09,125 ******************************************************************************** 2025-10-16T09:09:09,126 !! 2025-10-16T09:09:09,126 dist._finalize_license_expression() 2025-10-16T09:09:09,129 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-16T09:09:09,130 !! 2025-10-16T09:09:09,131 ******************************************************************************** 2025-10-16T09:09:09,131 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-16T09:09:09,132 License :: OSI Approved :: BSD License 2025-10-16T09:09:09,133 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-16T09:09:09,134 ******************************************************************************** 2025-10-16T09:09:09,135 !! 2025-10-16T09:09:09,135 self._finalize_license_expression() 2025-10-16T09:09:09,136 running bdist_wheel 2025-10-16T09:09:09,162 running build 2025-10-16T09:09:09,162 running build_py 2025-10-16T09:09:09,170 creating build/lib.linux-armv7l-cpython-311/skbio 2025-10-16T09:09:09,173 copying skbio/workflow.py -> build/lib.linux-armv7l-cpython-311/skbio 2025-10-16T09:09:09,176 copying skbio/_base.py -> build/lib.linux-armv7l-cpython-311/skbio 2025-10-16T09:09:09,178 copying skbio/_config.py -> build/lib.linux-armv7l-cpython-311/skbio 2025-10-16T09:09:09,180 copying skbio/test.py -> build/lib.linux-armv7l-cpython-311/skbio 2025-10-16T09:09:09,182 copying skbio/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio 2025-10-16T09:09:09,183 running egg_info 2025-10-16T09:09:09,197 writing scikit_bio.egg-info/PKG-INFO 2025-10-16T09:09:09,211 writing dependency_links to scikit_bio.egg-info/dependency_links.txt 2025-10-16T09:09:09,218 writing requirements to scikit_bio.egg-info/requires.txt 2025-10-16T09:09:09,219 writing top-level names to scikit_bio.egg-info/top_level.txt 2025-10-16T09:09:09,224 dependency /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-10-16T09:09:09,225 dependency /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-10-16T09:09:09,226 dependency /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-10-16T09:09:09,226 dependency /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-10-16T09:09:09,227 dependency /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-10-16T09:09:09,232 reading manifest file 'scikit_bio.egg-info/SOURCES.txt' 2025-10-16T09:09:09,369 reading manifest template 'MANIFEST.in' 2025-10-16T09:09:09,416 no previously-included directories found matching 'doc/build' 2025-10-16T09:09:09,418 no previously-included directories found matching 'doc/source/generated' 2025-10-16T09:09:09,420 no previously-included directories found matching 'web/_build' 2025-10-16T09:09:09,424 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-10-16T09:09:09,428 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2025-10-16T09:09:09,433 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-10-16T09:09:09,436 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2025-10-16T09:09:09,440 warning: no previously-included files matching '.coverage' found anywhere in distribution 2025-10-16T09:09:09,440 adding license file 'LICENSE.txt' 2025-10-16T09:09:09,480 writing manifest file 'scikit_bio.egg-info/SOURCES.txt' 2025-10-16T09:09:09,485 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.alignment' is absent from the `packages` configuration. 2025-10-16T09:09:09,485 !! 2025-10-16T09:09:09,486 ******************************************************************************** 2025-10-16T09:09:09,487 ############################ 2025-10-16T09:09:09,487 # Package would be ignored # 2025-10-16T09:09:09,487 ############################ 2025-10-16T09:09:09,488 Python recognizes 'skbio.alignment' as an importable package[^1], 2025-10-16T09:09:09,488 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,489 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,490 package, please make sure that 'skbio.alignment' is explicitly added 2025-10-16T09:09:09,490 to the `packages` configuration field. 2025-10-16T09:09:09,491 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,492 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,492 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,494 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,495 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,496 If you don't want 'skbio.alignment' to be distributed and are 2025-10-16T09:09:09,497 already explicitly excluding 'skbio.alignment' via 2025-10-16T09:09:09,497 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,498 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,499 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,500 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,501 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,502 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,503 even if it does not contain any `.py` files. 2025-10-16T09:09:09,503 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,503 directory, all directories are treated like packages. 2025-10-16T09:09:09,504 ******************************************************************************** 2025-10-16T09:09:09,505 !! 2025-10-16T09:09:09,505 check.warn(importable) 2025-10-16T09:09:09,506 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.alignment.tests' is absent from the `packages` configuration. 2025-10-16T09:09:09,506 !! 2025-10-16T09:09:09,508 ******************************************************************************** 2025-10-16T09:09:09,508 ############################ 2025-10-16T09:09:09,509 # Package would be ignored # 2025-10-16T09:09:09,509 ############################ 2025-10-16T09:09:09,510 Python recognizes 'skbio.alignment.tests' as an importable package[^1], 2025-10-16T09:09:09,511 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,512 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,512 package, please make sure that 'skbio.alignment.tests' is explicitly added 2025-10-16T09:09:09,512 to the `packages` configuration field. 2025-10-16T09:09:09,513 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,513 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,514 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,515 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,515 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,516 If you don't want 'skbio.alignment.tests' to be distributed and are 2025-10-16T09:09:09,517 already explicitly excluding 'skbio.alignment.tests' via 2025-10-16T09:09:09,517 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,517 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,518 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,519 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,520 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,521 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,522 even if it does not contain any `.py` files. 2025-10-16T09:09:09,522 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,523 directory, all directories are treated like packages. 2025-10-16T09:09:09,523 ******************************************************************************** 2025-10-16T09:09:09,524 !! 2025-10-16T09:09:09,525 check.warn(importable) 2025-10-16T09:09:09,526 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.alignment.tests.data' is absent from the `packages` configuration. 2025-10-16T09:09:09,526 !! 2025-10-16T09:09:09,527 ******************************************************************************** 2025-10-16T09:09:09,528 ############################ 2025-10-16T09:09:09,528 # Package would be ignored # 2025-10-16T09:09:09,529 ############################ 2025-10-16T09:09:09,530 Python recognizes 'skbio.alignment.tests.data' as an importable package[^1], 2025-10-16T09:09:09,530 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,531 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,532 package, please make sure that 'skbio.alignment.tests.data' is explicitly added 2025-10-16T09:09:09,532 to the `packages` configuration field. 2025-10-16T09:09:09,533 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,534 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,534 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,535 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,536 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,537 If you don't want 'skbio.alignment.tests.data' to be distributed and are 2025-10-16T09:09:09,538 already explicitly excluding 'skbio.alignment.tests.data' via 2025-10-16T09:09:09,539 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,539 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,540 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,540 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,541 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,542 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,543 even if it does not contain any `.py` files. 2025-10-16T09:09:09,543 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,544 directory, all directories are treated like packages. 2025-10-16T09:09:09,544 ******************************************************************************** 2025-10-16T09:09:09,545 !! 2025-10-16T09:09:09,545 check.warn(importable) 2025-10-16T09:09:09,545 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.binaries' is absent from the `packages` configuration. 2025-10-16T09:09:09,546 !! 2025-10-16T09:09:09,546 ******************************************************************************** 2025-10-16T09:09:09,547 ############################ 2025-10-16T09:09:09,547 # Package would be ignored # 2025-10-16T09:09:09,548 ############################ 2025-10-16T09:09:09,548 Python recognizes 'skbio.binaries' as an importable package[^1], 2025-10-16T09:09:09,549 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,550 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,550 package, please make sure that 'skbio.binaries' is explicitly added 2025-10-16T09:09:09,551 to the `packages` configuration field. 2025-10-16T09:09:09,552 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,553 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,553 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,554 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,555 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,556 If you don't want 'skbio.binaries' to be distributed and are 2025-10-16T09:09:09,557 already explicitly excluding 'skbio.binaries' via 2025-10-16T09:09:09,558 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,558 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,558 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,559 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,560 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,562 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,562 even if it does not contain any `.py` files. 2025-10-16T09:09:09,563 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,563 directory, all directories are treated like packages. 2025-10-16T09:09:09,563 ******************************************************************************** 2025-10-16T09:09:09,564 !! 2025-10-16T09:09:09,565 check.warn(importable) 2025-10-16T09:09:09,565 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.binaries.tests' is absent from the `packages` configuration. 2025-10-16T09:09:09,566 !! 2025-10-16T09:09:09,567 ******************************************************************************** 2025-10-16T09:09:09,567 ############################ 2025-10-16T09:09:09,568 # Package would be ignored # 2025-10-16T09:09:09,568 ############################ 2025-10-16T09:09:09,568 Python recognizes 'skbio.binaries.tests' as an importable package[^1], 2025-10-16T09:09:09,569 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,569 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,570 package, please make sure that 'skbio.binaries.tests' is explicitly added 2025-10-16T09:09:09,570 to the `packages` configuration field. 2025-10-16T09:09:09,571 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,571 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,572 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,572 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,573 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,574 If you don't want 'skbio.binaries.tests' to be distributed and are 2025-10-16T09:09:09,574 already explicitly excluding 'skbio.binaries.tests' via 2025-10-16T09:09:09,575 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,575 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,575 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,576 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,577 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,579 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,579 even if it does not contain any `.py` files. 2025-10-16T09:09:09,580 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,581 directory, all directories are treated like packages. 2025-10-16T09:09:09,581 ******************************************************************************** 2025-10-16T09:09:09,583 !! 2025-10-16T09:09:09,583 check.warn(importable) 2025-10-16T09:09:09,584 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.diversity' is absent from the `packages` configuration. 2025-10-16T09:09:09,585 !! 2025-10-16T09:09:09,585 ******************************************************************************** 2025-10-16T09:09:09,586 ############################ 2025-10-16T09:09:09,587 # Package would be ignored # 2025-10-16T09:09:09,587 ############################ 2025-10-16T09:09:09,587 Python recognizes 'skbio.diversity' as an importable package[^1], 2025-10-16T09:09:09,588 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,589 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,589 package, please make sure that 'skbio.diversity' is explicitly added 2025-10-16T09:09:09,590 to the `packages` configuration field. 2025-10-16T09:09:09,591 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,592 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,592 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,593 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,595 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,596 If you don't want 'skbio.diversity' to be distributed and are 2025-10-16T09:09:09,596 already explicitly excluding 'skbio.diversity' via 2025-10-16T09:09:09,596 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,597 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,597 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,597 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,598 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,599 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,599 even if it does not contain any `.py` files. 2025-10-16T09:09:09,600 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,600 directory, all directories are treated like packages. 2025-10-16T09:09:09,601 ******************************************************************************** 2025-10-16T09:09:09,601 !! 2025-10-16T09:09:09,602 check.warn(importable) 2025-10-16T09:09:09,602 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.diversity.alpha' is absent from the `packages` configuration. 2025-10-16T09:09:09,602 !! 2025-10-16T09:09:09,603 ******************************************************************************** 2025-10-16T09:09:09,604 ############################ 2025-10-16T09:09:09,604 # Package would be ignored # 2025-10-16T09:09:09,604 ############################ 2025-10-16T09:09:09,605 Python recognizes 'skbio.diversity.alpha' as an importable package[^1], 2025-10-16T09:09:09,605 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,606 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,607 package, please make sure that 'skbio.diversity.alpha' is explicitly added 2025-10-16T09:09:09,607 to the `packages` configuration field. 2025-10-16T09:09:09,609 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,609 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,609 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,610 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,611 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,612 If you don't want 'skbio.diversity.alpha' to be distributed and are 2025-10-16T09:09:09,612 already explicitly excluding 'skbio.diversity.alpha' via 2025-10-16T09:09:09,613 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,613 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,614 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,615 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,616 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,617 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,618 even if it does not contain any `.py` files. 2025-10-16T09:09:09,618 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,619 directory, all directories are treated like packages. 2025-10-16T09:09:09,620 ******************************************************************************** 2025-10-16T09:09:09,620 !! 2025-10-16T09:09:09,621 check.warn(importable) 2025-10-16T09:09:09,621 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.diversity.alpha.tests' is absent from the `packages` configuration. 2025-10-16T09:09:09,622 !! 2025-10-16T09:09:09,622 ******************************************************************************** 2025-10-16T09:09:09,623 ############################ 2025-10-16T09:09:09,623 # Package would be ignored # 2025-10-16T09:09:09,623 ############################ 2025-10-16T09:09:09,624 Python recognizes 'skbio.diversity.alpha.tests' as an importable package[^1], 2025-10-16T09:09:09,624 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,625 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,625 package, please make sure that 'skbio.diversity.alpha.tests' is explicitly added 2025-10-16T09:09:09,625 to the `packages` configuration field. 2025-10-16T09:09:09,626 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,626 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,627 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,627 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,629 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,630 If you don't want 'skbio.diversity.alpha.tests' to be distributed and are 2025-10-16T09:09:09,630 already explicitly excluding 'skbio.diversity.alpha.tests' via 2025-10-16T09:09:09,631 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,631 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,632 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,633 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,634 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,635 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,636 even if it does not contain any `.py` files. 2025-10-16T09:09:09,636 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,636 directory, all directories are treated like packages. 2025-10-16T09:09:09,637 ******************************************************************************** 2025-10-16T09:09:09,638 !! 2025-10-16T09:09:09,638 check.warn(importable) 2025-10-16T09:09:09,638 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.diversity.alpha.tests.data' is absent from the `packages` configuration. 2025-10-16T09:09:09,639 !! 2025-10-16T09:09:09,640 ******************************************************************************** 2025-10-16T09:09:09,640 ############################ 2025-10-16T09:09:09,641 # Package would be ignored # 2025-10-16T09:09:09,641 ############################ 2025-10-16T09:09:09,642 Python recognizes 'skbio.diversity.alpha.tests.data' as an importable package[^1], 2025-10-16T09:09:09,642 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,644 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,644 package, please make sure that 'skbio.diversity.alpha.tests.data' is explicitly added 2025-10-16T09:09:09,645 to the `packages` configuration field. 2025-10-16T09:09:09,646 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,646 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,646 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,647 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,648 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,648 If you don't want 'skbio.diversity.alpha.tests.data' to be distributed and are 2025-10-16T09:09:09,649 already explicitly excluding 'skbio.diversity.alpha.tests.data' via 2025-10-16T09:09:09,649 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,649 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,650 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,651 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,651 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,653 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,653 even if it does not contain any `.py` files. 2025-10-16T09:09:09,653 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,654 directory, all directories are treated like packages. 2025-10-16T09:09:09,654 ******************************************************************************** 2025-10-16T09:09:09,656 !! 2025-10-16T09:09:09,656 check.warn(importable) 2025-10-16T09:09:09,657 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.diversity.beta' is absent from the `packages` configuration. 2025-10-16T09:09:09,658 !! 2025-10-16T09:09:09,659 ******************************************************************************** 2025-10-16T09:09:09,659 ############################ 2025-10-16T09:09:09,660 # Package would be ignored # 2025-10-16T09:09:09,661 ############################ 2025-10-16T09:09:09,661 Python recognizes 'skbio.diversity.beta' as an importable package[^1], 2025-10-16T09:09:09,662 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,663 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,663 package, please make sure that 'skbio.diversity.beta' is explicitly added 2025-10-16T09:09:09,664 to the `packages` configuration field. 2025-10-16T09:09:09,665 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,665 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,666 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,667 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,667 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,668 If you don't want 'skbio.diversity.beta' to be distributed and are 2025-10-16T09:09:09,669 already explicitly excluding 'skbio.diversity.beta' via 2025-10-16T09:09:09,669 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,670 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,670 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,672 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,672 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,673 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,674 even if it does not contain any `.py` files. 2025-10-16T09:09:09,674 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,674 directory, all directories are treated like packages. 2025-10-16T09:09:09,675 ******************************************************************************** 2025-10-16T09:09:09,675 !! 2025-10-16T09:09:09,676 check.warn(importable) 2025-10-16T09:09:09,676 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.diversity.beta.tests' is absent from the `packages` configuration. 2025-10-16T09:09:09,676 !! 2025-10-16T09:09:09,677 ******************************************************************************** 2025-10-16T09:09:09,678 ############################ 2025-10-16T09:09:09,678 # Package would be ignored # 2025-10-16T09:09:09,678 ############################ 2025-10-16T09:09:09,679 Python recognizes 'skbio.diversity.beta.tests' as an importable package[^1], 2025-10-16T09:09:09,679 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,680 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,680 package, please make sure that 'skbio.diversity.beta.tests' is explicitly added 2025-10-16T09:09:09,681 to the `packages` configuration field. 2025-10-16T09:09:09,682 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,682 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,683 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,684 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,685 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,686 If you don't want 'skbio.diversity.beta.tests' to be distributed and are 2025-10-16T09:09:09,687 already explicitly excluding 'skbio.diversity.beta.tests' via 2025-10-16T09:09:09,687 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,688 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,688 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,690 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,690 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,692 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,692 even if it does not contain any `.py` files. 2025-10-16T09:09:09,693 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,693 directory, all directories are treated like packages. 2025-10-16T09:09:09,694 ******************************************************************************** 2025-10-16T09:09:09,695 !! 2025-10-16T09:09:09,695 check.warn(importable) 2025-10-16T09:09:09,696 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.diversity.beta.tests.data' is absent from the `packages` configuration. 2025-10-16T09:09:09,696 !! 2025-10-16T09:09:09,697 ******************************************************************************** 2025-10-16T09:09:09,698 ############################ 2025-10-16T09:09:09,698 # Package would be ignored # 2025-10-16T09:09:09,699 ############################ 2025-10-16T09:09:09,699 Python recognizes 'skbio.diversity.beta.tests.data' as an importable package[^1], 2025-10-16T09:09:09,700 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,700 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,701 package, please make sure that 'skbio.diversity.beta.tests.data' is explicitly added 2025-10-16T09:09:09,701 to the `packages` configuration field. 2025-10-16T09:09:09,702 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,702 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,702 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,703 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,704 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,704 If you don't want 'skbio.diversity.beta.tests.data' to be distributed and are 2025-10-16T09:09:09,705 already explicitly excluding 'skbio.diversity.beta.tests.data' via 2025-10-16T09:09:09,705 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,705 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,706 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,707 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,708 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,709 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,710 even if it does not contain any `.py` files. 2025-10-16T09:09:09,710 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,711 directory, all directories are treated like packages. 2025-10-16T09:09:09,712 ******************************************************************************** 2025-10-16T09:09:09,713 !! 2025-10-16T09:09:09,713 check.warn(importable) 2025-10-16T09:09:09,714 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.diversity.tests' is absent from the `packages` configuration. 2025-10-16T09:09:09,714 !! 2025-10-16T09:09:09,715 ******************************************************************************** 2025-10-16T09:09:09,716 ############################ 2025-10-16T09:09:09,716 # Package would be ignored # 2025-10-16T09:09:09,717 ############################ 2025-10-16T09:09:09,717 Python recognizes 'skbio.diversity.tests' as an importable package[^1], 2025-10-16T09:09:09,718 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,718 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,719 package, please make sure that 'skbio.diversity.tests' is explicitly added 2025-10-16T09:09:09,719 to the `packages` configuration field. 2025-10-16T09:09:09,720 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,721 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,721 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,722 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,724 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,725 If you don't want 'skbio.diversity.tests' to be distributed and are 2025-10-16T09:09:09,725 already explicitly excluding 'skbio.diversity.tests' via 2025-10-16T09:09:09,726 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,727 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,727 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,728 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,729 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,730 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,730 even if it does not contain any `.py` files. 2025-10-16T09:09:09,730 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,731 directory, all directories are treated like packages. 2025-10-16T09:09:09,731 ******************************************************************************** 2025-10-16T09:09:09,732 !! 2025-10-16T09:09:09,732 check.warn(importable) 2025-10-16T09:09:09,733 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.embedding' is absent from the `packages` configuration. 2025-10-16T09:09:09,733 !! 2025-10-16T09:09:09,734 ******************************************************************************** 2025-10-16T09:09:09,734 ############################ 2025-10-16T09:09:09,735 # Package would be ignored # 2025-10-16T09:09:09,735 ############################ 2025-10-16T09:09:09,736 Python recognizes 'skbio.embedding' as an importable package[^1], 2025-10-16T09:09:09,736 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,737 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,738 package, please make sure that 'skbio.embedding' is explicitly added 2025-10-16T09:09:09,738 to the `packages` configuration field. 2025-10-16T09:09:09,739 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,740 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,741 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,742 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,743 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,744 If you don't want 'skbio.embedding' to be distributed and are 2025-10-16T09:09:09,744 already explicitly excluding 'skbio.embedding' via 2025-10-16T09:09:09,745 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,745 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,746 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,747 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,748 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,749 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,750 even if it does not contain any `.py` files. 2025-10-16T09:09:09,750 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,751 directory, all directories are treated like packages. 2025-10-16T09:09:09,751 ******************************************************************************** 2025-10-16T09:09:09,752 !! 2025-10-16T09:09:09,753 check.warn(importable) 2025-10-16T09:09:09,753 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.embedding.tests' is absent from the `packages` configuration. 2025-10-16T09:09:09,754 !! 2025-10-16T09:09:09,755 ******************************************************************************** 2025-10-16T09:09:09,755 ############################ 2025-10-16T09:09:09,755 # Package would be ignored # 2025-10-16T09:09:09,756 ############################ 2025-10-16T09:09:09,756 Python recognizes 'skbio.embedding.tests' as an importable package[^1], 2025-10-16T09:09:09,757 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,757 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,758 package, please make sure that 'skbio.embedding.tests' is explicitly added 2025-10-16T09:09:09,758 to the `packages` configuration field. 2025-10-16T09:09:09,759 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,759 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,759 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,760 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,761 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,762 If you don't want 'skbio.embedding.tests' to be distributed and are 2025-10-16T09:09:09,762 already explicitly excluding 'skbio.embedding.tests' via 2025-10-16T09:09:09,762 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,763 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,763 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,764 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,765 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,767 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,767 even if it does not contain any `.py` files. 2025-10-16T09:09:09,768 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,768 directory, all directories are treated like packages. 2025-10-16T09:09:09,769 ******************************************************************************** 2025-10-16T09:09:09,770 !! 2025-10-16T09:09:09,770 check.warn(importable) 2025-10-16T09:09:09,771 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.embedding.tests.data' is absent from the `packages` configuration. 2025-10-16T09:09:09,771 !! 2025-10-16T09:09:09,772 ******************************************************************************** 2025-10-16T09:09:09,772 ############################ 2025-10-16T09:09:09,773 # Package would be ignored # 2025-10-16T09:09:09,773 ############################ 2025-10-16T09:09:09,774 Python recognizes 'skbio.embedding.tests.data' as an importable package[^1], 2025-10-16T09:09:09,774 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,775 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,776 package, please make sure that 'skbio.embedding.tests.data' is explicitly added 2025-10-16T09:09:09,776 to the `packages` configuration field. 2025-10-16T09:09:09,777 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,778 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,779 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,780 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,781 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,781 If you don't want 'skbio.embedding.tests.data' to be distributed and are 2025-10-16T09:09:09,782 already explicitly excluding 'skbio.embedding.tests.data' via 2025-10-16T09:09:09,782 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,782 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,783 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,784 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,784 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,785 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,786 even if it does not contain any `.py` files. 2025-10-16T09:09:09,786 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,786 directory, all directories are treated like packages. 2025-10-16T09:09:09,787 ******************************************************************************** 2025-10-16T09:09:09,788 !! 2025-10-16T09:09:09,788 check.warn(importable) 2025-10-16T09:09:09,788 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.io' is absent from the `packages` configuration. 2025-10-16T09:09:09,789 !! 2025-10-16T09:09:09,789 ******************************************************************************** 2025-10-16T09:09:09,790 ############################ 2025-10-16T09:09:09,790 # Package would be ignored # 2025-10-16T09:09:09,791 ############################ 2025-10-16T09:09:09,791 Python recognizes 'skbio.io' as an importable package[^1], 2025-10-16T09:09:09,792 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,793 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,794 package, please make sure that 'skbio.io' is explicitly added 2025-10-16T09:09:09,794 to the `packages` configuration field. 2025-10-16T09:09:09,795 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,796 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,796 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,797 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,798 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,799 If you don't want 'skbio.io' to be distributed and are 2025-10-16T09:09:09,800 already explicitly excluding 'skbio.io' via 2025-10-16T09:09:09,800 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,801 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,801 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,802 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,804 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,805 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,806 even if it does not contain any `.py` files. 2025-10-16T09:09:09,806 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,807 directory, all directories are treated like packages. 2025-10-16T09:09:09,808 ******************************************************************************** 2025-10-16T09:09:09,808 !! 2025-10-16T09:09:09,809 check.warn(importable) 2025-10-16T09:09:09,809 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.io.format' is absent from the `packages` configuration. 2025-10-16T09:09:09,809 !! 2025-10-16T09:09:09,810 ******************************************************************************** 2025-10-16T09:09:09,810 ############################ 2025-10-16T09:09:09,811 # Package would be ignored # 2025-10-16T09:09:09,811 ############################ 2025-10-16T09:09:09,812 Python recognizes 'skbio.io.format' as an importable package[^1], 2025-10-16T09:09:09,812 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,813 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,813 package, please make sure that 'skbio.io.format' is explicitly added 2025-10-16T09:09:09,813 to the `packages` configuration field. 2025-10-16T09:09:09,814 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,815 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,815 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,816 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,817 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,818 If you don't want 'skbio.io.format' to be distributed and are 2025-10-16T09:09:09,819 already explicitly excluding 'skbio.io.format' via 2025-10-16T09:09:09,819 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,820 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,821 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,822 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,823 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,824 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,825 even if it does not contain any `.py` files. 2025-10-16T09:09:09,826 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,826 directory, all directories are treated like packages. 2025-10-16T09:09:09,826 ******************************************************************************** 2025-10-16T09:09:09,827 !! 2025-10-16T09:09:09,828 check.warn(importable) 2025-10-16T09:09:09,828 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.io.format.tests' is absent from the `packages` configuration. 2025-10-16T09:09:09,829 !! 2025-10-16T09:09:09,830 ******************************************************************************** 2025-10-16T09:09:09,830 ############################ 2025-10-16T09:09:09,831 # Package would be ignored # 2025-10-16T09:09:09,831 ############################ 2025-10-16T09:09:09,832 Python recognizes 'skbio.io.format.tests' as an importable package[^1], 2025-10-16T09:09:09,832 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,833 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,834 package, please make sure that 'skbio.io.format.tests' is explicitly added 2025-10-16T09:09:09,835 to the `packages` configuration field. 2025-10-16T09:09:09,835 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,836 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,836 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,837 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,837 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,838 If you don't want 'skbio.io.format.tests' to be distributed and are 2025-10-16T09:09:09,838 already explicitly excluding 'skbio.io.format.tests' via 2025-10-16T09:09:09,839 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,839 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,840 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,840 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,841 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,842 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,843 even if it does not contain any `.py` files. 2025-10-16T09:09:09,843 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,844 directory, all directories are treated like packages. 2025-10-16T09:09:09,844 ******************************************************************************** 2025-10-16T09:09:09,845 !! 2025-10-16T09:09:09,846 check.warn(importable) 2025-10-16T09:09:09,846 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.io.format.tests.data' is absent from the `packages` configuration. 2025-10-16T09:09:09,847 !! 2025-10-16T09:09:09,848 ******************************************************************************** 2025-10-16T09:09:09,849 ############################ 2025-10-16T09:09:09,849 # Package would be ignored # 2025-10-16T09:09:09,850 ############################ 2025-10-16T09:09:09,850 Python recognizes 'skbio.io.format.tests.data' as an importable package[^1], 2025-10-16T09:09:09,851 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,852 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,853 package, please make sure that 'skbio.io.format.tests.data' is explicitly added 2025-10-16T09:09:09,853 to the `packages` configuration field. 2025-10-16T09:09:09,854 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,855 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,855 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,856 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,857 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,858 If you don't want 'skbio.io.format.tests.data' to be distributed and are 2025-10-16T09:09:09,859 already explicitly excluding 'skbio.io.format.tests.data' via 2025-10-16T09:09:09,859 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,860 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,860 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,862 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,862 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,863 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,864 even if it does not contain any `.py` files. 2025-10-16T09:09:09,864 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,864 directory, all directories are treated like packages. 2025-10-16T09:09:09,865 ******************************************************************************** 2025-10-16T09:09:09,865 !! 2025-10-16T09:09:09,866 check.warn(importable) 2025-10-16T09:09:09,866 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.io.tests' is absent from the `packages` configuration. 2025-10-16T09:09:09,866 !! 2025-10-16T09:09:09,867 ******************************************************************************** 2025-10-16T09:09:09,867 ############################ 2025-10-16T09:09:09,868 # Package would be ignored # 2025-10-16T09:09:09,868 ############################ 2025-10-16T09:09:09,868 Python recognizes 'skbio.io.tests' as an importable package[^1], 2025-10-16T09:09:09,869 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,870 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,870 package, please make sure that 'skbio.io.tests' is explicitly added 2025-10-16T09:09:09,870 to the `packages` configuration field. 2025-10-16T09:09:09,871 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,872 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,873 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,874 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,875 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,876 If you don't want 'skbio.io.tests' to be distributed and are 2025-10-16T09:09:09,877 already explicitly excluding 'skbio.io.tests' via 2025-10-16T09:09:09,877 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,878 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,878 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,880 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,881 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,882 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,883 even if it does not contain any `.py` files. 2025-10-16T09:09:09,884 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,884 directory, all directories are treated like packages. 2025-10-16T09:09:09,885 ******************************************************************************** 2025-10-16T09:09:09,886 !! 2025-10-16T09:09:09,886 check.warn(importable) 2025-10-16T09:09:09,887 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.io.tests.data' is absent from the `packages` configuration. 2025-10-16T09:09:09,887 !! 2025-10-16T09:09:09,888 ******************************************************************************** 2025-10-16T09:09:09,889 ############################ 2025-10-16T09:09:09,889 # Package would be ignored # 2025-10-16T09:09:09,890 ############################ 2025-10-16T09:09:09,890 Python recognizes 'skbio.io.tests.data' as an importable package[^1], 2025-10-16T09:09:09,891 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,891 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,892 package, please make sure that 'skbio.io.tests.data' is explicitly added 2025-10-16T09:09:09,892 to the `packages` configuration field. 2025-10-16T09:09:09,893 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,893 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,894 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,894 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,895 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,896 If you don't want 'skbio.io.tests.data' to be distributed and are 2025-10-16T09:09:09,896 already explicitly excluding 'skbio.io.tests.data' via 2025-10-16T09:09:09,897 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,897 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,897 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,898 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,899 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,901 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,901 even if it does not contain any `.py` files. 2025-10-16T09:09:09,902 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,902 directory, all directories are treated like packages. 2025-10-16T09:09:09,903 ******************************************************************************** 2025-10-16T09:09:09,904 !! 2025-10-16T09:09:09,905 check.warn(importable) 2025-10-16T09:09:09,905 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.metadata' is absent from the `packages` configuration. 2025-10-16T09:09:09,906 !! 2025-10-16T09:09:09,907 ******************************************************************************** 2025-10-16T09:09:09,908 ############################ 2025-10-16T09:09:09,908 # Package would be ignored # 2025-10-16T09:09:09,909 ############################ 2025-10-16T09:09:09,909 Python recognizes 'skbio.metadata' as an importable package[^1], 2025-10-16T09:09:09,910 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,911 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,911 package, please make sure that 'skbio.metadata' is explicitly added 2025-10-16T09:09:09,912 to the `packages` configuration field. 2025-10-16T09:09:09,913 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,913 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,914 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,915 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,916 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,917 If you don't want 'skbio.metadata' to be distributed and are 2025-10-16T09:09:09,918 already explicitly excluding 'skbio.metadata' via 2025-10-16T09:09:09,918 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,919 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,919 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,920 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,921 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,922 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,922 even if it does not contain any `.py` files. 2025-10-16T09:09:09,923 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,923 directory, all directories are treated like packages. 2025-10-16T09:09:09,923 ******************************************************************************** 2025-10-16T09:09:09,924 !! 2025-10-16T09:09:09,924 check.warn(importable) 2025-10-16T09:09:09,925 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.metadata.tests' is absent from the `packages` configuration. 2025-10-16T09:09:09,925 !! 2025-10-16T09:09:09,926 ******************************************************************************** 2025-10-16T09:09:09,926 ############################ 2025-10-16T09:09:09,927 # Package would be ignored # 2025-10-16T09:09:09,927 ############################ 2025-10-16T09:09:09,927 Python recognizes 'skbio.metadata.tests' as an importable package[^1], 2025-10-16T09:09:09,928 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,929 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,929 package, please make sure that 'skbio.metadata.tests' is explicitly added 2025-10-16T09:09:09,930 to the `packages` configuration field. 2025-10-16T09:09:09,931 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,932 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,932 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,933 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,934 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,936 If you don't want 'skbio.metadata.tests' to be distributed and are 2025-10-16T09:09:09,936 already explicitly excluding 'skbio.metadata.tests' via 2025-10-16T09:09:09,937 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,937 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,938 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,939 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,939 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,941 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,941 even if it does not contain any `.py` files. 2025-10-16T09:09:09,942 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,942 directory, all directories are treated like packages. 2025-10-16T09:09:09,943 ******************************************************************************** 2025-10-16T09:09:09,944 !! 2025-10-16T09:09:09,945 check.warn(importable) 2025-10-16T09:09:09,945 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.metadata.tests.data.invalid' is absent from the `packages` configuration. 2025-10-16T09:09:09,946 !! 2025-10-16T09:09:09,947 ******************************************************************************** 2025-10-16T09:09:09,947 ############################ 2025-10-16T09:09:09,948 # Package would be ignored # 2025-10-16T09:09:09,948 ############################ 2025-10-16T09:09:09,948 Python recognizes 'skbio.metadata.tests.data.invalid' as an importable package[^1], 2025-10-16T09:09:09,949 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,949 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,950 package, please make sure that 'skbio.metadata.tests.data.invalid' is explicitly added 2025-10-16T09:09:09,950 to the `packages` configuration field. 2025-10-16T09:09:09,951 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,951 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,952 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,953 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,954 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,954 If you don't want 'skbio.metadata.tests.data.invalid' to be distributed and are 2025-10-16T09:09:09,955 already explicitly excluding 'skbio.metadata.tests.data.invalid' via 2025-10-16T09:09:09,955 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,956 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,957 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,958 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,959 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,961 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,961 even if it does not contain any `.py` files. 2025-10-16T09:09:09,962 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,963 directory, all directories are treated like packages. 2025-10-16T09:09:09,963 ******************************************************************************** 2025-10-16T09:09:09,964 !! 2025-10-16T09:09:09,965 check.warn(importable) 2025-10-16T09:09:09,965 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.metadata.tests.data.valid' is absent from the `packages` configuration. 2025-10-16T09:09:09,966 !! 2025-10-16T09:09:09,967 ******************************************************************************** 2025-10-16T09:09:09,967 ############################ 2025-10-16T09:09:09,968 # Package would be ignored # 2025-10-16T09:09:09,968 ############################ 2025-10-16T09:09:09,969 Python recognizes 'skbio.metadata.tests.data.valid' as an importable package[^1], 2025-10-16T09:09:09,969 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,970 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,971 package, please make sure that 'skbio.metadata.tests.data.valid' is explicitly added 2025-10-16T09:09:09,971 to the `packages` configuration field. 2025-10-16T09:09:09,972 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,973 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,974 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,975 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,976 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,976 If you don't want 'skbio.metadata.tests.data.valid' to be distributed and are 2025-10-16T09:09:09,977 already explicitly excluding 'skbio.metadata.tests.data.valid' via 2025-10-16T09:09:09,977 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,977 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,978 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,979 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,979 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:09,981 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:09,981 even if it does not contain any `.py` files. 2025-10-16T09:09:09,981 On the other hand, currently there is no concept of package data 2025-10-16T09:09:09,982 directory, all directories are treated like packages. 2025-10-16T09:09:09,982 ******************************************************************************** 2025-10-16T09:09:09,983 !! 2025-10-16T09:09:09,983 check.warn(importable) 2025-10-16T09:09:09,984 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.sequence' is absent from the `packages` configuration. 2025-10-16T09:09:09,984 !! 2025-10-16T09:09:09,985 ******************************************************************************** 2025-10-16T09:09:09,986 ############################ 2025-10-16T09:09:09,986 # Package would be ignored # 2025-10-16T09:09:09,987 ############################ 2025-10-16T09:09:09,987 Python recognizes 'skbio.sequence' as an importable package[^1], 2025-10-16T09:09:09,988 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:09,989 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:09,989 package, please make sure that 'skbio.sequence' is explicitly added 2025-10-16T09:09:09,990 to the `packages` configuration field. 2025-10-16T09:09:09,991 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:09,992 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:09,992 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:09,993 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:09,994 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:09,995 If you don't want 'skbio.sequence' to be distributed and are 2025-10-16T09:09:09,996 already explicitly excluding 'skbio.sequence' via 2025-10-16T09:09:09,996 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:09,997 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:09,997 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:09,998 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:09,999 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,001 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,001 even if it does not contain any `.py` files. 2025-10-16T09:09:10,002 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,003 directory, all directories are treated like packages. 2025-10-16T09:09:10,003 ******************************************************************************** 2025-10-16T09:09:10,004 !! 2025-10-16T09:09:10,004 check.warn(importable) 2025-10-16T09:09:10,005 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.sequence.tests' is absent from the `packages` configuration. 2025-10-16T09:09:10,005 !! 2025-10-16T09:09:10,006 ******************************************************************************** 2025-10-16T09:09:10,006 ############################ 2025-10-16T09:09:10,006 # Package would be ignored # 2025-10-16T09:09:10,007 ############################ 2025-10-16T09:09:10,007 Python recognizes 'skbio.sequence.tests' as an importable package[^1], 2025-10-16T09:09:10,007 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,008 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,008 package, please make sure that 'skbio.sequence.tests' is explicitly added 2025-10-16T09:09:10,009 to the `packages` configuration field. 2025-10-16T09:09:10,010 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,010 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,010 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,011 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,012 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,013 If you don't want 'skbio.sequence.tests' to be distributed and are 2025-10-16T09:09:10,013 already explicitly excluding 'skbio.sequence.tests' via 2025-10-16T09:09:10,014 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,014 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,015 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,016 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,017 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,018 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,019 even if it does not contain any `.py` files. 2025-10-16T09:09:10,020 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,020 directory, all directories are treated like packages. 2025-10-16T09:09:10,021 ******************************************************************************** 2025-10-16T09:09:10,021 !! 2025-10-16T09:09:10,022 check.warn(importable) 2025-10-16T09:09:10,022 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.stats' is absent from the `packages` configuration. 2025-10-16T09:09:10,023 !! 2025-10-16T09:09:10,024 ******************************************************************************** 2025-10-16T09:09:10,024 ############################ 2025-10-16T09:09:10,025 # Package would be ignored # 2025-10-16T09:09:10,025 ############################ 2025-10-16T09:09:10,026 Python recognizes 'skbio.stats' as an importable package[^1], 2025-10-16T09:09:10,026 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,027 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,028 package, please make sure that 'skbio.stats' is explicitly added 2025-10-16T09:09:10,028 to the `packages` configuration field. 2025-10-16T09:09:10,029 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,030 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,030 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,031 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,032 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,033 If you don't want 'skbio.stats' to be distributed and are 2025-10-16T09:09:10,033 already explicitly excluding 'skbio.stats' via 2025-10-16T09:09:10,034 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,034 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,035 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,036 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,036 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,038 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,038 even if it does not contain any `.py` files. 2025-10-16T09:09:10,039 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,039 directory, all directories are treated like packages. 2025-10-16T09:09:10,040 ******************************************************************************** 2025-10-16T09:09:10,040 !! 2025-10-16T09:09:10,041 check.warn(importable) 2025-10-16T09:09:10,042 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.stats.distance' is absent from the `packages` configuration. 2025-10-16T09:09:10,042 !! 2025-10-16T09:09:10,043 ******************************************************************************** 2025-10-16T09:09:10,044 ############################ 2025-10-16T09:09:10,044 # Package would be ignored # 2025-10-16T09:09:10,045 ############################ 2025-10-16T09:09:10,045 Python recognizes 'skbio.stats.distance' as an importable package[^1], 2025-10-16T09:09:10,046 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,047 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,048 package, please make sure that 'skbio.stats.distance' is explicitly added 2025-10-16T09:09:10,048 to the `packages` configuration field. 2025-10-16T09:09:10,049 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,050 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,050 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,051 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,052 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,053 If you don't want 'skbio.stats.distance' to be distributed and are 2025-10-16T09:09:10,054 already explicitly excluding 'skbio.stats.distance' via 2025-10-16T09:09:10,055 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,055 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,056 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,057 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,058 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,059 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,059 even if it does not contain any `.py` files. 2025-10-16T09:09:10,060 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,060 directory, all directories are treated like packages. 2025-10-16T09:09:10,060 ******************************************************************************** 2025-10-16T09:09:10,061 !! 2025-10-16T09:09:10,062 check.warn(importable) 2025-10-16T09:09:10,062 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.stats.distance.tests' is absent from the `packages` configuration. 2025-10-16T09:09:10,062 !! 2025-10-16T09:09:10,063 ******************************************************************************** 2025-10-16T09:09:10,064 ############################ 2025-10-16T09:09:10,064 # Package would be ignored # 2025-10-16T09:09:10,064 ############################ 2025-10-16T09:09:10,065 Python recognizes 'skbio.stats.distance.tests' as an importable package[^1], 2025-10-16T09:09:10,065 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,066 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,066 package, please make sure that 'skbio.stats.distance.tests' is explicitly added 2025-10-16T09:09:10,067 to the `packages` configuration field. 2025-10-16T09:09:10,068 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,068 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,069 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,070 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,071 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,072 If you don't want 'skbio.stats.distance.tests' to be distributed and are 2025-10-16T09:09:10,072 already explicitly excluding 'skbio.stats.distance.tests' via 2025-10-16T09:09:10,073 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,073 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,074 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,075 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,076 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,078 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,078 even if it does not contain any `.py` files. 2025-10-16T09:09:10,079 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,079 directory, all directories are treated like packages. 2025-10-16T09:09:10,080 ******************************************************************************** 2025-10-16T09:09:10,081 !! 2025-10-16T09:09:10,082 check.warn(importable) 2025-10-16T09:09:10,083 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.stats.distance.tests.data' is absent from the `packages` configuration. 2025-10-16T09:09:10,089 !! 2025-10-16T09:09:10,098 ******************************************************************************** 2025-10-16T09:09:10,099 ############################ 2025-10-16T09:09:10,100 # Package would be ignored # 2025-10-16T09:09:10,101 ############################ 2025-10-16T09:09:10,102 Python recognizes 'skbio.stats.distance.tests.data' as an importable package[^1], 2025-10-16T09:09:10,102 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,103 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,103 package, please make sure that 'skbio.stats.distance.tests.data' is explicitly added 2025-10-16T09:09:10,104 to the `packages` configuration field. 2025-10-16T09:09:10,105 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,105 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,106 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,106 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,107 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,109 If you don't want 'skbio.stats.distance.tests.data' to be distributed and are 2025-10-16T09:09:10,109 already explicitly excluding 'skbio.stats.distance.tests.data' via 2025-10-16T09:09:10,110 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,111 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,111 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,113 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,115 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,117 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,118 even if it does not contain any `.py` files. 2025-10-16T09:09:10,118 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,119 directory, all directories are treated like packages. 2025-10-16T09:09:10,119 ******************************************************************************** 2025-10-16T09:09:10,120 !! 2025-10-16T09:09:10,121 check.warn(importable) 2025-10-16T09:09:10,121 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.stats.evolve' is absent from the `packages` configuration. 2025-10-16T09:09:10,122 !! 2025-10-16T09:09:10,123 ******************************************************************************** 2025-10-16T09:09:10,123 ############################ 2025-10-16T09:09:10,124 # Package would be ignored # 2025-10-16T09:09:10,124 ############################ 2025-10-16T09:09:10,125 Python recognizes 'skbio.stats.evolve' as an importable package[^1], 2025-10-16T09:09:10,125 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,127 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,128 package, please make sure that 'skbio.stats.evolve' is explicitly added 2025-10-16T09:09:10,128 to the `packages` configuration field. 2025-10-16T09:09:10,129 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,130 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,130 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,131 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,132 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,134 If you don't want 'skbio.stats.evolve' to be distributed and are 2025-10-16T09:09:10,134 already explicitly excluding 'skbio.stats.evolve' via 2025-10-16T09:09:10,135 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,135 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,136 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,137 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,137 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,139 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,140 even if it does not contain any `.py` files. 2025-10-16T09:09:10,140 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,141 directory, all directories are treated like packages. 2025-10-16T09:09:10,141 ******************************************************************************** 2025-10-16T09:09:10,142 !! 2025-10-16T09:09:10,143 check.warn(importable) 2025-10-16T09:09:10,143 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.stats.evolve.tests' is absent from the `packages` configuration. 2025-10-16T09:09:10,144 !! 2025-10-16T09:09:10,145 ******************************************************************************** 2025-10-16T09:09:10,145 ############################ 2025-10-16T09:09:10,145 # Package would be ignored # 2025-10-16T09:09:10,146 ############################ 2025-10-16T09:09:10,146 Python recognizes 'skbio.stats.evolve.tests' as an importable package[^1], 2025-10-16T09:09:10,147 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,148 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,149 package, please make sure that 'skbio.stats.evolve.tests' is explicitly added 2025-10-16T09:09:10,149 to the `packages` configuration field. 2025-10-16T09:09:10,150 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,151 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,151 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,152 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,153 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,155 If you don't want 'skbio.stats.evolve.tests' to be distributed and are 2025-10-16T09:09:10,156 already explicitly excluding 'skbio.stats.evolve.tests' via 2025-10-16T09:09:10,156 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,157 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,158 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,159 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,160 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,162 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,162 even if it does not contain any `.py` files. 2025-10-16T09:09:10,163 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,164 directory, all directories are treated like packages. 2025-10-16T09:09:10,164 ******************************************************************************** 2025-10-16T09:09:10,166 !! 2025-10-16T09:09:10,167 check.warn(importable) 2025-10-16T09:09:10,167 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.stats.ordination' is absent from the `packages` configuration. 2025-10-16T09:09:10,168 !! 2025-10-16T09:09:10,169 ******************************************************************************** 2025-10-16T09:09:10,169 ############################ 2025-10-16T09:09:10,170 # Package would be ignored # 2025-10-16T09:09:10,170 ############################ 2025-10-16T09:09:10,171 Python recognizes 'skbio.stats.ordination' as an importable package[^1], 2025-10-16T09:09:10,171 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,173 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,173 package, please make sure that 'skbio.stats.ordination' is explicitly added 2025-10-16T09:09:10,174 to the `packages` configuration field. 2025-10-16T09:09:10,175 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,176 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,176 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,177 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,178 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,179 If you don't want 'skbio.stats.ordination' to be distributed and are 2025-10-16T09:09:10,179 already explicitly excluding 'skbio.stats.ordination' via 2025-10-16T09:09:10,180 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,180 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,181 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,182 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,183 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,184 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,185 even if it does not contain any `.py` files. 2025-10-16T09:09:10,185 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,186 directory, all directories are treated like packages. 2025-10-16T09:09:10,186 ******************************************************************************** 2025-10-16T09:09:10,187 !! 2025-10-16T09:09:10,188 check.warn(importable) 2025-10-16T09:09:10,188 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.stats.ordination.tests' is absent from the `packages` configuration. 2025-10-16T09:09:10,189 !! 2025-10-16T09:09:10,190 ******************************************************************************** 2025-10-16T09:09:10,191 ############################ 2025-10-16T09:09:10,191 # Package would be ignored # 2025-10-16T09:09:10,192 ############################ 2025-10-16T09:09:10,192 Python recognizes 'skbio.stats.ordination.tests' as an importable package[^1], 2025-10-16T09:09:10,193 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,194 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,194 package, please make sure that 'skbio.stats.ordination.tests' is explicitly added 2025-10-16T09:09:10,195 to the `packages` configuration field. 2025-10-16T09:09:10,196 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,196 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,197 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,198 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,198 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,199 If you don't want 'skbio.stats.ordination.tests' to be distributed and are 2025-10-16T09:09:10,200 already explicitly excluding 'skbio.stats.ordination.tests' via 2025-10-16T09:09:10,200 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,201 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,201 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,202 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,203 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,204 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,204 even if it does not contain any `.py` files. 2025-10-16T09:09:10,205 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,206 directory, all directories are treated like packages. 2025-10-16T09:09:10,206 ******************************************************************************** 2025-10-16T09:09:10,207 !! 2025-10-16T09:09:10,208 check.warn(importable) 2025-10-16T09:09:10,208 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.stats.ordination.tests.data' is absent from the `packages` configuration. 2025-10-16T09:09:10,209 !! 2025-10-16T09:09:10,210 ******************************************************************************** 2025-10-16T09:09:10,211 ############################ 2025-10-16T09:09:10,211 # Package would be ignored # 2025-10-16T09:09:10,212 ############################ 2025-10-16T09:09:10,213 Python recognizes 'skbio.stats.ordination.tests.data' as an importable package[^1], 2025-10-16T09:09:10,213 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,214 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,215 package, please make sure that 'skbio.stats.ordination.tests.data' is explicitly added 2025-10-16T09:09:10,215 to the `packages` configuration field. 2025-10-16T09:09:10,216 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,217 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,218 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,219 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,220 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,221 If you don't want 'skbio.stats.ordination.tests.data' to be distributed and are 2025-10-16T09:09:10,221 already explicitly excluding 'skbio.stats.ordination.tests.data' via 2025-10-16T09:09:10,222 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,222 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,223 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,224 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,225 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,226 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,227 even if it does not contain any `.py` files. 2025-10-16T09:09:10,227 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,227 directory, all directories are treated like packages. 2025-10-16T09:09:10,228 ******************************************************************************** 2025-10-16T09:09:10,229 !! 2025-10-16T09:09:10,229 check.warn(importable) 2025-10-16T09:09:10,229 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.stats.tests' is absent from the `packages` configuration. 2025-10-16T09:09:10,230 !! 2025-10-16T09:09:10,231 ******************************************************************************** 2025-10-16T09:09:10,231 ############################ 2025-10-16T09:09:10,232 # Package would be ignored # 2025-10-16T09:09:10,232 ############################ 2025-10-16T09:09:10,233 Python recognizes 'skbio.stats.tests' as an importable package[^1], 2025-10-16T09:09:10,233 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,235 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,235 package, please make sure that 'skbio.stats.tests' is explicitly added 2025-10-16T09:09:10,236 to the `packages` configuration field. 2025-10-16T09:09:10,237 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,238 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,238 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,239 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,240 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,242 If you don't want 'skbio.stats.tests' to be distributed and are 2025-10-16T09:09:10,242 already explicitly excluding 'skbio.stats.tests' via 2025-10-16T09:09:10,243 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,243 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,244 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,246 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,247 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,249 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,250 even if it does not contain any `.py` files. 2025-10-16T09:09:10,251 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,252 directory, all directories are treated like packages. 2025-10-16T09:09:10,253 ******************************************************************************** 2025-10-16T09:09:10,254 !! 2025-10-16T09:09:10,255 check.warn(importable) 2025-10-16T09:09:10,256 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.stats.tests.data' is absent from the `packages` configuration. 2025-10-16T09:09:10,256 !! 2025-10-16T09:09:10,258 ******************************************************************************** 2025-10-16T09:09:10,258 ############################ 2025-10-16T09:09:10,259 # Package would be ignored # 2025-10-16T09:09:10,260 ############################ 2025-10-16T09:09:10,260 Python recognizes 'skbio.stats.tests.data' as an importable package[^1], 2025-10-16T09:09:10,261 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,262 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,263 package, please make sure that 'skbio.stats.tests.data' is explicitly added 2025-10-16T09:09:10,264 to the `packages` configuration field. 2025-10-16T09:09:10,265 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,265 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,266 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,267 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,268 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,269 If you don't want 'skbio.stats.tests.data' to be distributed and are 2025-10-16T09:09:10,270 already explicitly excluding 'skbio.stats.tests.data' via 2025-10-16T09:09:10,271 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,272 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,273 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,274 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,275 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,277 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,278 even if it does not contain any `.py` files. 2025-10-16T09:09:10,279 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,279 directory, all directories are treated like packages. 2025-10-16T09:09:10,280 ******************************************************************************** 2025-10-16T09:09:10,282 !! 2025-10-16T09:09:10,282 check.warn(importable) 2025-10-16T09:09:10,283 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.table' is absent from the `packages` configuration. 2025-10-16T09:09:10,284 !! 2025-10-16T09:09:10,285 ******************************************************************************** 2025-10-16T09:09:10,285 ############################ 2025-10-16T09:09:10,286 # Package would be ignored # 2025-10-16T09:09:10,287 ############################ 2025-10-16T09:09:10,287 Python recognizes 'skbio.table' as an importable package[^1], 2025-10-16T09:09:10,288 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,289 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,290 package, please make sure that 'skbio.table' is explicitly added 2025-10-16T09:09:10,291 to the `packages` configuration field. 2025-10-16T09:09:10,292 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,293 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,294 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,295 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,296 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,298 If you don't want 'skbio.table' to be distributed and are 2025-10-16T09:09:10,299 already explicitly excluding 'skbio.table' via 2025-10-16T09:09:10,299 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,300 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,301 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,302 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,303 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,305 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,305 even if it does not contain any `.py` files. 2025-10-16T09:09:10,307 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,307 directory, all directories are treated like packages. 2025-10-16T09:09:10,308 ******************************************************************************** 2025-10-16T09:09:10,309 !! 2025-10-16T09:09:10,309 check.warn(importable) 2025-10-16T09:09:10,310 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.table.tests' is absent from the `packages` configuration. 2025-10-16T09:09:10,311 !! 2025-10-16T09:09:10,312 ******************************************************************************** 2025-10-16T09:09:10,313 ############################ 2025-10-16T09:09:10,313 # Package would be ignored # 2025-10-16T09:09:10,314 ############################ 2025-10-16T09:09:10,314 Python recognizes 'skbio.table.tests' as an importable package[^1], 2025-10-16T09:09:10,315 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,316 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,317 package, please make sure that 'skbio.table.tests' is explicitly added 2025-10-16T09:09:10,317 to the `packages` configuration field. 2025-10-16T09:09:10,319 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,319 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,320 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,321 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,323 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,324 If you don't want 'skbio.table.tests' to be distributed and are 2025-10-16T09:09:10,325 already explicitly excluding 'skbio.table.tests' via 2025-10-16T09:09:10,325 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,326 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,327 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,328 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,329 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,331 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,332 even if it does not contain any `.py` files. 2025-10-16T09:09:10,333 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,333 directory, all directories are treated like packages. 2025-10-16T09:09:10,334 ******************************************************************************** 2025-10-16T09:09:10,335 !! 2025-10-16T09:09:10,335 check.warn(importable) 2025-10-16T09:09:10,336 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.tests' is absent from the `packages` configuration. 2025-10-16T09:09:10,336 !! 2025-10-16T09:09:10,337 ******************************************************************************** 2025-10-16T09:09:10,338 ############################ 2025-10-16T09:09:10,339 # Package would be ignored # 2025-10-16T09:09:10,339 ############################ 2025-10-16T09:09:10,340 Python recognizes 'skbio.tests' as an importable package[^1], 2025-10-16T09:09:10,340 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,341 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,342 package, please make sure that 'skbio.tests' is explicitly added 2025-10-16T09:09:10,342 to the `packages` configuration field. 2025-10-16T09:09:10,343 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,344 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,344 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,345 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,346 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,347 If you don't want 'skbio.tests' to be distributed and are 2025-10-16T09:09:10,348 already explicitly excluding 'skbio.tests' via 2025-10-16T09:09:10,348 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,349 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,349 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,350 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,351 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,353 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,353 even if it does not contain any `.py` files. 2025-10-16T09:09:10,354 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,354 directory, all directories are treated like packages. 2025-10-16T09:09:10,355 ******************************************************************************** 2025-10-16T09:09:10,356 !! 2025-10-16T09:09:10,356 check.warn(importable) 2025-10-16T09:09:10,357 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.tree' is absent from the `packages` configuration. 2025-10-16T09:09:10,357 !! 2025-10-16T09:09:10,358 ******************************************************************************** 2025-10-16T09:09:10,359 ############################ 2025-10-16T09:09:10,360 # Package would be ignored # 2025-10-16T09:09:10,360 ############################ 2025-10-16T09:09:10,361 Python recognizes 'skbio.tree' as an importable package[^1], 2025-10-16T09:09:10,361 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,362 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,363 package, please make sure that 'skbio.tree' is explicitly added 2025-10-16T09:09:10,363 to the `packages` configuration field. 2025-10-16T09:09:10,364 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,365 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,366 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,367 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,368 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,369 If you don't want 'skbio.tree' to be distributed and are 2025-10-16T09:09:10,370 already explicitly excluding 'skbio.tree' via 2025-10-16T09:09:10,370 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,371 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,371 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,373 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,374 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,376 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,377 even if it does not contain any `.py` files. 2025-10-16T09:09:10,377 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,378 directory, all directories are treated like packages. 2025-10-16T09:09:10,378 ******************************************************************************** 2025-10-16T09:09:10,379 !! 2025-10-16T09:09:10,380 check.warn(importable) 2025-10-16T09:09:10,380 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.tree.tests' is absent from the `packages` configuration. 2025-10-16T09:09:10,381 !! 2025-10-16T09:09:10,382 ******************************************************************************** 2025-10-16T09:09:10,382 ############################ 2025-10-16T09:09:10,383 # Package would be ignored # 2025-10-16T09:09:10,383 ############################ 2025-10-16T09:09:10,384 Python recognizes 'skbio.tree.tests' as an importable package[^1], 2025-10-16T09:09:10,384 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,385 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,386 package, please make sure that 'skbio.tree.tests' is explicitly added 2025-10-16T09:09:10,386 to the `packages` configuration field. 2025-10-16T09:09:10,387 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,388 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,388 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,389 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,390 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,391 If you don't want 'skbio.tree.tests' to be distributed and are 2025-10-16T09:09:10,392 already explicitly excluding 'skbio.tree.tests' via 2025-10-16T09:09:10,392 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,393 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,394 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,395 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,396 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,397 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,398 even if it does not contain any `.py` files. 2025-10-16T09:09:10,398 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,399 directory, all directories are treated like packages. 2025-10-16T09:09:10,400 ******************************************************************************** 2025-10-16T09:09:10,401 !! 2025-10-16T09:09:10,401 check.warn(importable) 2025-10-16T09:09:10,402 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.util' is absent from the `packages` configuration. 2025-10-16T09:09:10,403 !! 2025-10-16T09:09:10,404 ******************************************************************************** 2025-10-16T09:09:10,404 ############################ 2025-10-16T09:09:10,405 # Package would be ignored # 2025-10-16T09:09:10,405 ############################ 2025-10-16T09:09:10,406 Python recognizes 'skbio.util' as an importable package[^1], 2025-10-16T09:09:10,406 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,407 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,407 package, please make sure that 'skbio.util' is explicitly added 2025-10-16T09:09:10,408 to the `packages` configuration field. 2025-10-16T09:09:10,409 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,409 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,410 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,411 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,412 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,412 If you don't want 'skbio.util' to be distributed and are 2025-10-16T09:09:10,413 already explicitly excluding 'skbio.util' via 2025-10-16T09:09:10,413 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,414 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,414 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,415 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,416 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,418 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,418 even if it does not contain any `.py` files. 2025-10-16T09:09:10,419 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,419 directory, all directories are treated like packages. 2025-10-16T09:09:10,420 ******************************************************************************** 2025-10-16T09:09:10,421 !! 2025-10-16T09:09:10,422 check.warn(importable) 2025-10-16T09:09:10,422 /tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'skbio.util.tests' is absent from the `packages` configuration. 2025-10-16T09:09:10,423 !! 2025-10-16T09:09:10,424 ******************************************************************************** 2025-10-16T09:09:10,424 ############################ 2025-10-16T09:09:10,425 # Package would be ignored # 2025-10-16T09:09:10,425 ############################ 2025-10-16T09:09:10,426 Python recognizes 'skbio.util.tests' as an importable package[^1], 2025-10-16T09:09:10,426 but it is absent from setuptools' `packages` configuration. 2025-10-16T09:09:10,428 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-16T09:09:10,428 package, please make sure that 'skbio.util.tests' is explicitly added 2025-10-16T09:09:10,429 to the `packages` configuration field. 2025-10-16T09:09:10,430 Alternatively, you can also rely on setuptools' discovery methods 2025-10-16T09:09:10,430 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-16T09:09:10,431 instead of `find_packages(...)`/`find:`). 2025-10-16T09:09:10,432 You can read more about "package discovery" on setuptools documentation page: 2025-10-16T09:09:10,433 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-16T09:09:10,434 If you don't want 'skbio.util.tests' to be distributed and are 2025-10-16T09:09:10,434 already explicitly excluding 'skbio.util.tests' via 2025-10-16T09:09:10,435 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-16T09:09:10,435 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-16T09:09:10,436 combination with a more fine grained `package-data` configuration. 2025-10-16T09:09:10,436 You can read more about "package data files" on setuptools documentation page: 2025-10-16T09:09:10,437 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-16T09:09:10,439 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-16T09:09:10,440 even if it does not contain any `.py` files. 2025-10-16T09:09:10,440 On the other hand, currently there is no concept of package data 2025-10-16T09:09:10,441 directory, all directories are treated like packages. 2025-10-16T09:09:10,441 ******************************************************************************** 2025-10-16T09:09:10,442 !! 2025-10-16T09:09:10,443 check.warn(importable) 2025-10-16T09:09:10,443 creating build/lib.linux-armv7l-cpython-311/skbio/alignment 2025-10-16T09:09:10,444 copying skbio/alignment/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2025-10-16T09:09:10,444 copying skbio/alignment/_cutils.c -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2025-10-16T09:09:10,445 copying skbio/alignment/_cutils.pyx -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2025-10-16T09:09:10,446 copying skbio/alignment/_indexing.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2025-10-16T09:09:10,446 copying skbio/alignment/_pair.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2025-10-16T09:09:10,447 copying skbio/alignment/_pairwise.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2025-10-16T09:09:10,447 copying skbio/alignment/_path.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2025-10-16T09:09:10,448 copying skbio/alignment/_repr.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2025-10-16T09:09:10,448 copying skbio/alignment/_score.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2025-10-16T09:09:10,449 copying skbio/alignment/_tabular_msa.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2025-10-16T09:09:10,450 copying skbio/alignment/_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2025-10-16T09:09:10,450 creating build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2025-10-16T09:09:10,451 copying skbio/alignment/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2025-10-16T09:09:10,451 copying skbio/alignment/tests/test_pair.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2025-10-16T09:09:10,452 copying skbio/alignment/tests/test_pairwise.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2025-10-16T09:09:10,452 copying skbio/alignment/tests/test_path.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2025-10-16T09:09:10,453 copying skbio/alignment/tests/test_score.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2025-10-16T09:09:10,454 copying skbio/alignment/tests/test_tabular_msa.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2025-10-16T09:09:10,454 copying skbio/alignment/tests/test_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2025-10-16T09:09:10,455 creating build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data 2025-10-16T09:09:10,456 copying skbio/alignment/tests/data/16s.frn -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data 2025-10-16T09:09:10,456 copying skbio/alignment/tests/data/il6.nucl.aln -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data 2025-10-16T09:09:10,457 copying skbio/alignment/tests/data/il6.prot.aln -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data 2025-10-16T09:09:10,457 copying skbio/alignment/tests/data/insulin.faa -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data 2025-10-16T09:09:10,458 creating build/lib.linux-armv7l-cpython-311/skbio/binaries 2025-10-16T09:09:10,458 copying skbio/binaries/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/binaries 2025-10-16T09:09:10,459 copying skbio/binaries/_distance.py -> build/lib.linux-armv7l-cpython-311/skbio/binaries 2025-10-16T09:09:10,459 copying skbio/binaries/_ordination.py -> build/lib.linux-armv7l-cpython-311/skbio/binaries 2025-10-16T09:09:10,460 copying skbio/binaries/_util.py -> build/lib.linux-armv7l-cpython-311/skbio/binaries 2025-10-16T09:09:10,460 creating build/lib.linux-armv7l-cpython-311/skbio/binaries/tests 2025-10-16T09:09:10,461 copying skbio/binaries/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/binaries/tests 2025-10-16T09:09:10,461 creating build/lib.linux-armv7l-cpython-311/skbio/diversity 2025-10-16T09:09:10,462 copying skbio/diversity/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity 2025-10-16T09:09:10,462 copying skbio/diversity/_block.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity 2025-10-16T09:09:10,463 copying skbio/diversity/_driver.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity 2025-10-16T09:09:10,464 copying skbio/diversity/_phylogenetic.c -> build/lib.linux-armv7l-cpython-311/skbio/diversity 2025-10-16T09:09:10,464 copying skbio/diversity/_phylogenetic.pyx -> build/lib.linux-armv7l-cpython-311/skbio/diversity 2025-10-16T09:09:10,465 copying skbio/diversity/_util.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity 2025-10-16T09:09:10,465 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2025-10-16T09:09:10,466 copying skbio/diversity/alpha/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2025-10-16T09:09:10,466 copying skbio/diversity/alpha/_ace.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2025-10-16T09:09:10,467 copying skbio/diversity/alpha/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2025-10-16T09:09:10,467 copying skbio/diversity/alpha/_chao1.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2025-10-16T09:09:10,468 copying skbio/diversity/alpha/_gini.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2025-10-16T09:09:10,468 copying skbio/diversity/alpha/_lladser.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2025-10-16T09:09:10,469 copying skbio/diversity/alpha/_pd.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2025-10-16T09:09:10,470 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2025-10-16T09:09:10,470 copying skbio/diversity/alpha/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2025-10-16T09:09:10,471 copying skbio/diversity/alpha/tests/test_ace.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2025-10-16T09:09:10,471 copying skbio/diversity/alpha/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2025-10-16T09:09:10,472 copying skbio/diversity/alpha/tests/test_chao1.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2025-10-16T09:09:10,472 copying skbio/diversity/alpha/tests/test_gini.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2025-10-16T09:09:10,473 copying skbio/diversity/alpha/tests/test_lladser.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2025-10-16T09:09:10,474 copying skbio/diversity/alpha/tests/test_pd.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2025-10-16T09:09:10,474 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-10-16T09:09:10,475 copying skbio/diversity/alpha/tests/data/qiime-191-tt/README.md -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-10-16T09:09:10,475 copying skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-10-16T09:09:10,476 copying skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-10-16T09:09:10,476 copying skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-10-16T09:09:10,477 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/beta 2025-10-16T09:09:10,477 copying skbio/diversity/beta/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta 2025-10-16T09:09:10,478 copying skbio/diversity/beta/_unifrac.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta 2025-10-16T09:09:10,478 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests 2025-10-16T09:09:10,479 copying skbio/diversity/beta/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests 2025-10-16T09:09:10,479 copying skbio/diversity/beta/tests/test_unifrac.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests 2025-10-16T09:09:10,480 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2025-10-16T09:09:10,480 copying skbio/diversity/beta/tests/data/qiime-191-tt/README.md -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2025-10-16T09:09:10,481 copying skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2025-10-16T09:09:10,481 copying skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2025-10-16T09:09:10,482 copying skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2025-10-16T09:09:10,482 copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2025-10-16T09:09:10,483 copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2025-10-16T09:09:10,483 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/tests 2025-10-16T09:09:10,484 copying skbio/diversity/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/tests 2025-10-16T09:09:10,485 copying skbio/diversity/tests/test_block.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/tests 2025-10-16T09:09:10,485 copying skbio/diversity/tests/test_driver.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/tests 2025-10-16T09:09:10,486 copying skbio/diversity/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/tests 2025-10-16T09:09:10,486 creating build/lib.linux-armv7l-cpython-311/skbio/embedding 2025-10-16T09:09:10,487 copying skbio/embedding/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/embedding 2025-10-16T09:09:10,487 copying skbio/embedding/_embedding.py -> build/lib.linux-armv7l-cpython-311/skbio/embedding 2025-10-16T09:09:10,488 copying skbio/embedding/_protein.py -> build/lib.linux-armv7l-cpython-311/skbio/embedding 2025-10-16T09:09:10,488 creating build/lib.linux-armv7l-cpython-311/skbio/embedding/tests 2025-10-16T09:09:10,489 copying skbio/embedding/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/embedding/tests 2025-10-16T09:09:10,490 copying skbio/embedding/tests/test_embedding.py -> build/lib.linux-armv7l-cpython-311/skbio/embedding/tests 2025-10-16T09:09:10,490 copying skbio/embedding/tests/test_protein.py -> build/lib.linux-armv7l-cpython-311/skbio/embedding/tests 2025-10-16T09:09:10,491 creating build/lib.linux-armv7l-cpython-311/skbio/embedding/tests/data 2025-10-16T09:09:10,491 copying skbio/embedding/tests/data/embed1.txt.npy -> build/lib.linux-armv7l-cpython-311/skbio/embedding/tests/data 2025-10-16T09:09:10,492 creating build/lib.linux-armv7l-cpython-311/skbio/io 2025-10-16T09:09:10,493 copying skbio/io/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2025-10-16T09:09:10,493 copying skbio/io/_exception.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2025-10-16T09:09:10,493 copying skbio/io/_fileobject.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2025-10-16T09:09:10,494 copying skbio/io/_iosources.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2025-10-16T09:09:10,494 copying skbio/io/_warning.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2025-10-16T09:09:10,495 copying skbio/io/descriptors.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2025-10-16T09:09:10,495 copying skbio/io/registry.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2025-10-16T09:09:10,496 copying skbio/io/util.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2025-10-16T09:09:10,496 creating build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,497 copying skbio/io/format/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,497 copying skbio/io/format/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,498 copying skbio/io/format/_blast.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,498 copying skbio/io/format/_sequence_feature_vocabulary.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,499 copying skbio/io/format/binary_dm.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,499 copying skbio/io/format/biom.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,500 copying skbio/io/format/blast6.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,500 copying skbio/io/format/blast7.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,501 copying skbio/io/format/clustal.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,502 copying skbio/io/format/embed.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,502 copying skbio/io/format/embl.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,503 copying skbio/io/format/emptyfile.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,503 copying skbio/io/format/fasta.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,504 copying skbio/io/format/fastq.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,504 copying skbio/io/format/genbank.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,505 copying skbio/io/format/gff3.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,505 copying skbio/io/format/lsmat.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,506 copying skbio/io/format/newick.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,507 copying skbio/io/format/ordination.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,507 copying skbio/io/format/phylip.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,508 copying skbio/io/format/qseq.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,508 copying skbio/io/format/sample_metadata.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,509 copying skbio/io/format/stockholm.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,509 copying skbio/io/format/taxdump.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2025-10-16T09:09:10,510 creating build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,511 copying skbio/io/format/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,511 copying skbio/io/format/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,512 copying skbio/io/format/tests/test_binary_dm.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,512 copying skbio/io/format/tests/test_biom.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,512 copying skbio/io/format/tests/test_blast6.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,513 copying skbio/io/format/tests/test_blast7.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,514 copying skbio/io/format/tests/test_clustal.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,514 copying skbio/io/format/tests/test_embed.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,515 copying skbio/io/format/tests/test_embl.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,516 copying skbio/io/format/tests/test_emptyfile.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,518 copying skbio/io/format/tests/test_fasta.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,521 copying skbio/io/format/tests/test_fastq.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,524 copying skbio/io/format/tests/test_genbank.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,527 copying skbio/io/format/tests/test_gff3.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,530 copying skbio/io/format/tests/test_lsmat.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,533 copying skbio/io/format/tests/test_newick.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,535 copying skbio/io/format/tests/test_ordination.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,538 copying skbio/io/format/tests/test_phylip.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,541 copying skbio/io/format/tests/test_qseq.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,544 copying skbio/io/format/tests/test_sample_metadata.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,546 copying skbio/io/format/tests/test_sequence_feature_vocabulary.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,548 copying skbio/io/format/tests/test_stockholm.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,552 copying skbio/io/format/tests/test_taxdump.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2025-10-16T09:09:10,555 creating build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,556 copying skbio/io/format/tests/data/blast6_custom_minimal -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,559 copying skbio/io/format/tests/data/blast6_custom_mixed_nans -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,561 copying skbio/io/format/tests/data/blast6_custom_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,563 copying skbio/io/format/tests/data/blast6_custom_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,565 copying skbio/io/format/tests/data/blast6_default_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,567 copying skbio/io/format/tests/data/blast6_default_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,570 copying skbio/io/format/tests/data/blast6_invalid_column_types -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,572 copying skbio/io/format/tests/data/blast6_invalid_number_of_columns -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,574 copying skbio/io/format/tests/data/blast6_invalid_type_in_column -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,576 copying skbio/io/format/tests/data/blast7_custom_minimal -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,578 copying skbio/io/format/tests/data/blast7_custom_mixed_nans -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,580 copying skbio/io/format/tests/data/blast7_custom_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,583 copying skbio/io/format/tests/data/blast7_custom_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,585 copying skbio/io/format/tests/data/blast7_default_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,587 copying skbio/io/format/tests/data/blast7_default_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,589 copying skbio/io/format/tests/data/blast7_invalid_differing_fields -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,591 copying skbio/io/format/tests/data/blast7_invalid_for_sniffer -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,593 copying skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,595 copying skbio/io/format/tests/data/blast7_invalid_gibberish -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,598 copying skbio/io/format/tests/data/blast7_invalid_no_data -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,600 copying skbio/io/format/tests/data/blast7_invalid_too_many_columns -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,602 copying skbio/io/format/tests/data/blast7_invalid_unrecognized_field -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,605 copying skbio/io/format/tests/data/embed1.txt.npy -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,611 copying skbio/io/format/tests/data/embed2.txt.npy -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,618 copying skbio/io/format/tests/data/embl_constructed -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,620 copying skbio/io/format/tests/data/embl_feature_level_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,622 copying skbio/io/format/tests/data/embl_feature_level_record_no_FT -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,625 copying skbio/io/format/tests/data/embl_multi_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,627 copying skbio/io/format/tests/data/embl_single_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,630 copying skbio/io/format/tests/data/embl_single_record_lower -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,632 copying skbio/io/format/tests/data/embl_single_record_simple -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,635 copying skbio/io/format/tests/data/embl_single_record_upper -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,637 copying skbio/io/format/tests/data/embl_uniprot_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,640 copying skbio/io/format/tests/data/embl_w_beginning_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,642 copying skbio/io/format/tests/data/empty -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,644 copying skbio/io/format/tests/data/error_diff_ids.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,646 copying skbio/io/format/tests/data/error_double_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,648 copying skbio/io/format/tests/data/error_double_seq.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,651 copying skbio/io/format/tests/data/error_long_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,653 copying skbio/io/format/tests/data/error_no_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,655 copying skbio/io/format/tests/data/error_qual_del.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,657 copying skbio/io/format/tests/data/error_qual_escape.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,659 copying skbio/io/format/tests/data/error_qual_null.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,662 copying skbio/io/format/tests/data/error_qual_space.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,664 copying skbio/io/format/tests/data/error_qual_tab.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,666 copying skbio/io/format/tests/data/error_qual_unit_sep.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,668 copying skbio/io/format/tests/data/error_qual_vtab.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,670 copying skbio/io/format/tests/data/error_short_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,673 copying skbio/io/format/tests/data/error_spaces.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,675 copying skbio/io/format/tests/data/error_tabs.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,677 copying skbio/io/format/tests/data/error_trunc_at_plus.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,680 copying skbio/io/format/tests/data/error_trunc_at_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,682 copying skbio/io/format/tests/data/error_trunc_at_seq.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,684 copying skbio/io/format/tests/data/error_trunc_in_plus.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,687 copying skbio/io/format/tests/data/error_trunc_in_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,689 copying skbio/io/format/tests/data/error_trunc_in_seq.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,691 copying skbio/io/format/tests/data/error_trunc_in_title.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,694 copying skbio/io/format/tests/data/fasta_10_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,696 copying skbio/io/format/tests/data/fasta_3_seqs_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,698 copying skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,700 copying skbio/io/format/tests/data/fasta_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,703 copying skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,705 copying skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,707 copying skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,709 copying skbio/io/format/tests/data/fasta_blank_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,711 copying skbio/io/format/tests/data/fasta_blanks_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,713 copying skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,716 copying skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,718 copying skbio/io/format/tests/data/fasta_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,720 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,722 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,725 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,728 copying skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,730 copying skbio/io/format/tests/data/fasta_invalid_blank_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,733 copying skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,735 copying skbio/io/format/tests/data/fasta_invalid_blank_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,737 copying skbio/io/format/tests/data/fasta_invalid_legacy_format -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,740 copying skbio/io/format/tests/data/fasta_invalid_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,742 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,745 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,748 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,750 copying skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,753 copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,756 copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,758 copying skbio/io/format/tests/data/fasta_max_width_1 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,761 copying skbio/io/format/tests/data/fasta_max_width_5 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,764 copying skbio/io/format/tests/data/fasta_mixed_qual_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,766 copying skbio/io/format/tests/data/fasta_multi_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,769 copying skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,771 copying skbio/io/format/tests/data/fasta_multi_seq_spaces -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,774 copying skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,776 copying skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,779 copying skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,782 copying skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,785 copying skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,788 copying skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,792 copying skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,796 copying skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,801 copying skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,806 copying skbio/io/format/tests/data/fasta_single_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,811 copying skbio/io/format/tests/data/fasta_tabular_msa_different_type -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,816 copying skbio/io/format/tests/data/fasta_ws_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,823 copying skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,829 copying skbio/io/format/tests/data/fastq_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,832 copying skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,835 copying skbio/io/format/tests/data/fastq_blank_lines -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,838 copying skbio/io/format/tests/data/fastq_invalid_blank_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,842 copying skbio/io/format/tests/data/fastq_invalid_blank_after_plus -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,846 copying skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,848 copying skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,850 copying skbio/io/format/tests/data/fastq_invalid_blank_within_qual -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,852 copying skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,855 copying skbio/io/format/tests/data/fastq_invalid_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,858 copying skbio/io/format/tests/data/fastq_invalid_missing_seq_data -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,861 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,864 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,867 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,870 copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,874 copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,877 copying skbio/io/format/tests/data/fastq_multi_blank_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,881 copying skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,885 copying skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,889 copying skbio/io/format/tests/data/fastq_multi_seq_sanger -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,894 copying skbio/io/format/tests/data/fastq_multi_whitespace_stripping -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,899 copying skbio/io/format/tests/data/fastq_multi_ws_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,905 copying skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,911 copying skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,918 copying skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,925 copying skbio/io/format/tests/data/fastq_single_seq_illumina1.8 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,933 copying skbio/io/format/tests/data/fastq_whitespace_only_lines -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,942 copying skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,951 copying skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,955 copying skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,957 copying skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,960 copying skbio/io/format/tests/data/fastq_writer_sanger_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,962 copying skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,964 copying skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,966 copying skbio/io/format/tests/data/genbank_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,969 copying skbio/io/format/tests/data/genbank_missing_locus_name -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,972 copying skbio/io/format/tests/data/genbank_multi_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,975 copying skbio/io/format/tests/data/genbank_single_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,979 copying skbio/io/format/tests/data/genbank_single_record_lower -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,982 copying skbio/io/format/tests/data/genbank_single_record_upper -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,986 copying skbio/io/format/tests/data/genbank_w_beginning_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,991 copying skbio/io/format/tests/data/gff3_bad_missing_directive -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:10,995 copying skbio/io/format/tests/data/gff3_bad_wrong_columns -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,000 copying skbio/io/format/tests/data/gff3_dna -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,006 copying skbio/io/format/tests/data/gff3_multi_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,012 copying skbio/io/format/tests/data/gff3_single_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,018 copying skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,025 copying skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,032 copying skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,040 copying skbio/io/format/tests/data/legacy9_and_blast7_default -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,049 copying skbio/io/format/tests/data/legacy9_invalid_differing_fields -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,058 copying skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,068 copying skbio/io/format/tests/data/legacy9_mixed_nans -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,079 copying skbio/io/format/tests/data/legacy9_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,090 copying skbio/io/format/tests/data/legacy9_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,102 copying skbio/io/format/tests/data/longreads_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,118 copying skbio/io/format/tests/data/longreads_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,139 copying skbio/io/format/tests/data/longreads_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,148 copying skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,151 copying skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,155 copying skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,158 copying skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,162 copying skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,165 copying skbio/io/format/tests/data/misc_rna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,168 copying skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,172 copying skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,175 copying skbio/io/format/tests/data/ordination_error1 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,179 copying skbio/io/format/tests/data/ordination_error10 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,182 copying skbio/io/format/tests/data/ordination_error11 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,186 copying skbio/io/format/tests/data/ordination_error12 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,189 copying skbio/io/format/tests/data/ordination_error13 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,193 copying skbio/io/format/tests/data/ordination_error14 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,196 copying skbio/io/format/tests/data/ordination_error15 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,199 copying skbio/io/format/tests/data/ordination_error16 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,203 copying skbio/io/format/tests/data/ordination_error17 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,207 copying skbio/io/format/tests/data/ordination_error18 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,210 copying skbio/io/format/tests/data/ordination_error19 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,214 copying skbio/io/format/tests/data/ordination_error2 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,217 copying skbio/io/format/tests/data/ordination_error20 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,221 copying skbio/io/format/tests/data/ordination_error21 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,224 copying skbio/io/format/tests/data/ordination_error22 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,227 copying skbio/io/format/tests/data/ordination_error23 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,231 copying skbio/io/format/tests/data/ordination_error24 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,234 copying skbio/io/format/tests/data/ordination_error3 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,238 copying skbio/io/format/tests/data/ordination_error4 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,241 copying skbio/io/format/tests/data/ordination_error5 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,244 copying skbio/io/format/tests/data/ordination_error6 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,247 copying skbio/io/format/tests/data/ordination_error7 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,249 copying skbio/io/format/tests/data/ordination_error8 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,251 copying skbio/io/format/tests/data/ordination_error9 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,254 copying skbio/io/format/tests/data/ordination_example2_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,256 copying skbio/io/format/tests/data/ordination_example3_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,259 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,261 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,263 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,265 copying skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,268 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,270 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,272 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,274 copying skbio/io/format/tests/data/pdb_hits.txt -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,276 copying skbio/io/format/tests/data/phylip_dna_3_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,278 copying skbio/io/format/tests/data/phylip_invalid_empty_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,281 copying skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,283 copying skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,285 copying skbio/io/format/tests/data/phylip_invalid_header_too_long -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,287 copying skbio/io/format/tests/data/phylip_invalid_header_too_short -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,290 copying skbio/io/format/tests/data/phylip_invalid_no_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,292 copying skbio/io/format/tests/data/phylip_invalid_seq_too_long -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,294 copying skbio/io/format/tests/data/phylip_invalid_seq_too_short -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,296 copying skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,299 copying skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,301 copying skbio/io/format/tests/data/phylip_invalid_zero_seq_len -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,303 copying skbio/io/format/tests/data/phylip_invalid_zero_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,305 copying skbio/io/format/tests/data/phylip_single_seq_long -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,308 copying skbio/io/format/tests/data/phylip_single_seq_short -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,310 copying skbio/io/format/tests/data/phylip_two_chunks -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,312 copying skbio/io/format/tests/data/phylip_variable_length_ids -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,314 copying skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,317 copying skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,319 copying skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,321 copying skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,323 copying skbio/io/format/tests/data/prot.emb -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,337 copying skbio/io/format/tests/data/prot_vec.emb -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,343 copying skbio/io/format/tests/data/qseq_invalid_filter -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,346 copying skbio/io/format/tests/data/qseq_invalid_lane -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,348 copying skbio/io/format/tests/data/qseq_invalid_read -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,350 copying skbio/io/format/tests/data/qseq_invalid_tile -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,352 copying skbio/io/format/tests/data/qseq_invalid_x -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,355 copying skbio/io/format/tests/data/qseq_invalid_y -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,358 copying skbio/io/format/tests/data/qseq_multi_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,362 copying skbio/io/format/tests/data/qseq_single_seq_sanger -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,366 copying skbio/io/format/tests/data/qual_2_seqs_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,371 copying skbio/io/format/tests/data/qual_3_seqs_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,376 copying skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,382 copying skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,388 copying skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,394 copying skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,401 copying skbio/io/format/tests/data/qual_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,409 copying skbio/io/format/tests/data/qual_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,417 copying skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,427 copying skbio/io/format/tests/data/qual_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,436 copying skbio/io/format/tests/data/qual_6_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,447 copying skbio/io/format/tests/data/qual_blank_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,459 copying skbio/io/format/tests/data/qual_blanks_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,470 copying skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,477 copying skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,485 copying skbio/io/format/tests/data/qual_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,490 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,494 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,499 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,504 copying skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,508 copying skbio/io/format/tests/data/qual_invalid_blank_line_within_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,510 copying skbio/io/format/tests/data/qual_invalid_blank_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,512 copying skbio/io/format/tests/data/qual_invalid_legacy_format -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,514 copying skbio/io/format/tests/data/qual_invalid_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,516 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,518 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,520 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,522 copying skbio/io/format/tests/data/qual_invalid_qual_scores_float -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,524 copying skbio/io/format/tests/data/qual_invalid_qual_scores_negative -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,526 copying skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,528 copying skbio/io/format/tests/data/qual_invalid_qual_scores_string -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,531 copying skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,533 copying skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,535 copying skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,537 copying skbio/io/format/tests/data/qual_max_width_1 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,539 copying skbio/io/format/tests/data/qual_max_width_5 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,541 copying skbio/io/format/tests/data/qual_multi_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,543 copying skbio/io/format/tests/data/qual_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,546 copying skbio/io/format/tests/data/qual_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,548 copying skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,550 copying skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,552 copying skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,554 copying skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,556 copying skbio/io/format/tests/data/qual_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,557 copying skbio/io/format/tests/data/qual_single_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,560 copying skbio/io/format/tests/data/qual_tabular_msa_different_type -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,562 copying skbio/io/format/tests/data/qual_ws_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,564 copying skbio/io/format/tests/data/qual_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,566 copying skbio/io/format/tests/data/sample-metadata-comments-comment-char-id.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,568 copying skbio/io/format/tests/data/sample-metadata-comments-mixed-case.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,571 copying skbio/io/format/tests/data/sample-metadata-comments.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,573 copying skbio/io/format/tests/data/sample-metadata-complete-types-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,575 copying skbio/io/format/tests/data/sample-metadata-empty-rows.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,578 copying skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace-split-id.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,580 copying skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,583 copying skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,585 copying skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,588 copying skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,590 copying skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,592 copying skbio/io/format/tests/data/stockholm_all_data_types -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,594 copying skbio/io/format/tests/data/stockholm_blank_lines -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,597 copying skbio/io/format/tests/data/stockholm_data_only -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,599 copying skbio/io/format/tests/data/stockholm_different_padding -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,602 copying skbio/io/format/tests/data/stockholm_differing_gc_data_length -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,604 copying skbio/io/format/tests/data/stockholm_differing_gr_data_length -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,606 copying skbio/io/format/tests/data/stockholm_differing_seq_lengths -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,608 copying skbio/io/format/tests/data/stockholm_duplicate_gc -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,610 copying skbio/io/format/tests/data/stockholm_duplicate_gr -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,613 copying skbio/io/format/tests/data/stockholm_duplicate_sequence_names -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,615 copying skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,617 copying skbio/io/format/tests/data/stockholm_extensive -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,619 copying skbio/io/format/tests/data/stockholm_extensive_mixed -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,621 copying skbio/io/format/tests/data/stockholm_invalid_data_type -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,623 copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,625 copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,628 copying skbio/io/format/tests/data/stockholm_malformed_data_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,630 copying skbio/io/format/tests/data/stockholm_malformed_gc_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,632 copying skbio/io/format/tests/data/stockholm_malformed_gf_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,635 copying skbio/io/format/tests/data/stockholm_malformed_gr_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,637 copying skbio/io/format/tests/data/stockholm_malformed_gs_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,639 copying skbio/io/format/tests/data/stockholm_metadata_only -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,641 copying skbio/io/format/tests/data/stockholm_minimal -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,644 copying skbio/io/format/tests/data/stockholm_missing_footer -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,646 copying skbio/io/format/tests/data/stockholm_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,648 copying skbio/io/format/tests/data/stockholm_missing_reference_items -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,651 copying skbio/io/format/tests/data/stockholm_missing_rn_tag -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,653 copying skbio/io/format/tests/data/stockholm_multi_line_tree_no_id -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,655 copying skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,657 copying skbio/io/format/tests/data/stockholm_multiple_msa -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,660 copying skbio/io/format/tests/data/stockholm_multiple_multi_line_trees -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,662 copying skbio/io/format/tests/data/stockholm_multiple_references -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,664 copying skbio/io/format/tests/data/stockholm_multiple_trees -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,666 copying skbio/io/format/tests/data/stockholm_no_data -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,668 copying skbio/io/format/tests/data/stockholm_nonstring_labels -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,670 copying skbio/io/format/tests/data/stockholm_rna -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,672 copying skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,675 copying skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,677 copying skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,679 copying skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,681 copying skbio/io/format/tests/data/stockholm_runon_references -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,683 copying skbio/io/format/tests/data/stockholm_runon_references_mixed -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,686 copying skbio/io/format/tests/data/stockholm_single_reference -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,688 copying skbio/io/format/tests/data/stockholm_single_tree_with_id -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,690 copying skbio/io/format/tests/data/stockholm_single_tree_without_id -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,692 copying skbio/io/format/tests/data/stockholm_two_of_each_metadata -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,695 copying skbio/io/format/tests/data/stockholm_whitespace_only_lines -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,697 copying skbio/io/format/tests/data/taxdump_names.dmp -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,699 copying skbio/io/format/tests/data/taxdump_nodes.dmp -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,701 copying skbio/io/format/tests/data/tiny_embedding_file.npz -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,736 copying skbio/io/format/tests/data/tsv_10_fields -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,739 copying skbio/io/format/tests/data/tsv_8_fields -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,741 copying skbio/io/format/tests/data/whitespace_only -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,743 copying skbio/io/format/tests/data/wrapping_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,746 copying skbio/io/format/tests/data/wrapping_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,748 copying skbio/io/format/tests/data/wrapping_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2025-10-16T09:09:11,750 creating build/lib.linux-armv7l-cpython-311/skbio/io/tests 2025-10-16T09:09:11,751 copying skbio/io/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2025-10-16T09:09:11,754 copying skbio/io/tests/test_iosources.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2025-10-16T09:09:11,756 copying skbio/io/tests/test_registry.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2025-10-16T09:09:11,760 copying skbio/io/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2025-10-16T09:09:11,762 creating build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2025-10-16T09:09:11,763 copying skbio/io/tests/data/big5_file -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2025-10-16T09:09:11,766 copying skbio/io/tests/data/big5_file.bz2 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2025-10-16T09:09:11,768 copying skbio/io/tests/data/big5_file.gz -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2025-10-16T09:09:11,770 copying skbio/io/tests/data/example_file -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2025-10-16T09:09:11,772 copying skbio/io/tests/data/example_file.bz2 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2025-10-16T09:09:11,774 copying skbio/io/tests/data/example_file.gz -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2025-10-16T09:09:11,777 copying skbio/io/tests/data/real_file -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2025-10-16T09:09:11,779 copying skbio/io/tests/data/real_file_2 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2025-10-16T09:09:11,781 creating build/lib.linux-armv7l-cpython-311/skbio/metadata 2025-10-16T09:09:11,782 copying skbio/metadata/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2025-10-16T09:09:11,784 copying skbio/metadata/_enan.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2025-10-16T09:09:11,787 copying skbio/metadata/_intersection.c -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2025-10-16T09:09:11,803 copying skbio/metadata/_intersection.pyx -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2025-10-16T09:09:11,806 copying skbio/metadata/_interval.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2025-10-16T09:09:11,809 copying skbio/metadata/_metadata.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2025-10-16T09:09:11,813 copying skbio/metadata/_mixin.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2025-10-16T09:09:11,816 copying skbio/metadata/_repr.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2025-10-16T09:09:11,818 copying skbio/metadata/_testing.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2025-10-16T09:09:11,822 copying skbio/metadata/base.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2025-10-16T09:09:11,825 copying skbio/metadata/io.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2025-10-16T09:09:11,828 copying skbio/metadata/missing.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2025-10-16T09:09:11,830 creating build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2025-10-16T09:09:11,831 copying skbio/metadata/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2025-10-16T09:09:11,834 copying skbio/metadata/tests/test_enan.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2025-10-16T09:09:11,836 copying skbio/metadata/tests/test_intersection.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2025-10-16T09:09:11,839 copying skbio/metadata/tests/test_interval.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2025-10-16T09:09:11,843 copying skbio/metadata/tests/test_io.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2025-10-16T09:09:11,846 copying skbio/metadata/tests/test_metadata.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2025-10-16T09:09:11,850 copying skbio/metadata/tests/test_metadata_column.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2025-10-16T09:09:11,853 copying skbio/metadata/tests/test_missing.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2025-10-16T09:09:11,855 copying skbio/metadata/tests/test_mixin.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2025-10-16T09:09:11,858 creating build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,860 copying skbio/metadata/tests/data/invalid/column-name-conflicts-with-id-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,862 copying skbio/metadata/tests/data/invalid/comments-and-empty-rows-only.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,864 copying skbio/metadata/tests/data/invalid/data-longer-than-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,866 copying skbio/metadata/tests/data/invalid/directive-after-directives-section.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,869 copying skbio/metadata/tests/data/invalid/directive-before-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,871 copying skbio/metadata/tests/data/invalid/directive-longer-than-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,873 copying skbio/metadata/tests/data/invalid/duplicate-column-names-with-whitespace.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,875 copying skbio/metadata/tests/data/invalid/duplicate-column-names.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,877 copying skbio/metadata/tests/data/invalid/duplicate-directives.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,880 copying skbio/metadata/tests/data/invalid/duplicate-ids-with-whitespace.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,882 copying skbio/metadata/tests/data/invalid/duplicate-ids.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,884 copying skbio/metadata/tests/data/invalid/empty-column-name.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,886 copying skbio/metadata/tests/data/invalid/empty-file -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,888 copying skbio/metadata/tests/data/invalid/empty-id.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,890 copying skbio/metadata/tests/data/invalid/header-only-with-comments-and-empty-rows.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,892 copying skbio/metadata/tests/data/invalid/header-only.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,894 copying skbio/metadata/tests/data/invalid/id-conflicts-with-id-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,897 copying skbio/metadata/tests/data/invalid/invalid-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,899 copying skbio/metadata/tests/data/invalid/missing-unknown-scheme.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,901 copying skbio/metadata/tests/data/invalid/non-utf-8.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,903 copying skbio/metadata/tests/data/invalid/qiime1-empty.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,906 copying skbio/metadata/tests/data/invalid/simple-utf-16be.txt -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,908 copying skbio/metadata/tests/data/invalid/simple-utf-16le.txt -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,910 copying skbio/metadata/tests/data/invalid/types-directive-non-numeric.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,912 copying skbio/metadata/tests/data/invalid/unrecognized-column-type.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,915 copying skbio/metadata/tests/data/invalid/unrecognized-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,917 copying skbio/metadata/tests/data/invalid/whitespace-only-column-name.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,919 copying skbio/metadata/tests/data/invalid/whitespace-only-id.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2025-10-16T09:09:11,921 creating build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,922 copying skbio/metadata/tests/data/valid/BOM-simple.txt -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,925 copying skbio/metadata/tests/data/valid/all-cells-padded.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,927 copying skbio/metadata/tests/data/valid/biom-observation-metadata.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,929 copying skbio/metadata/tests/data/valid/case-insensitive-types-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,932 copying skbio/metadata/tests/data/valid/column-order.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,934 copying skbio/metadata/tests/data/valid/comments.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,936 copying skbio/metadata/tests/data/valid/complete-types-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,938 copying skbio/metadata/tests/data/valid/complete-types-directive_w_sk.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,941 copying skbio/metadata/tests/data/valid/empty-rows.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,943 copying skbio/metadata/tests/data/valid/empty-types-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,945 copying skbio/metadata/tests/data/valid/jagged-trailing-columns.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,948 copying skbio/metadata/tests/data/valid/jagged.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,951 copying skbio/metadata/tests/data/valid/leading-trailing-whitespace.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,954 copying skbio/metadata/tests/data/valid/mac-line-endings.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,956 copying skbio/metadata/tests/data/valid/minimal.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,959 copying skbio/metadata/tests/data/valid/missing-data.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,962 copying skbio/metadata/tests/data/valid/missing-insdc-no-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,965 copying skbio/metadata/tests/data/valid/missing-insdc.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,967 copying skbio/metadata/tests/data/valid/no-columns.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,970 copying skbio/metadata/tests/data/valid/no-id-or-column-name-type-cast.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,973 copying skbio/metadata/tests/data/valid/no-newline-at-eof.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,976 copying skbio/metadata/tests/data/valid/non-standard-characters.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,979 copying skbio/metadata/tests/data/valid/numeric-column.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,981 copying skbio/metadata/tests/data/valid/override-insdc.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,984 copying skbio/metadata/tests/data/valid/partial-types-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,987 copying skbio/metadata/tests/data/valid/qiime1.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,989 copying skbio/metadata/tests/data/valid/qiita-preparation-information.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,992 copying skbio/metadata/tests/data/valid/qiita-sample-information.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,995 copying skbio/metadata/tests/data/valid/recommended-ids.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:11,998 copying skbio/metadata/tests/data/valid/rows-shorter-than-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:12,001 copying skbio/metadata/tests/data/valid/simple-with-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:12,003 copying skbio/metadata/tests/data/valid/simple.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:12,006 copying skbio/metadata/tests/data/valid/simple.txt -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:12,009 copying skbio/metadata/tests/data/valid/single-column.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:12,012 copying skbio/metadata/tests/data/valid/single-id.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:12,014 copying skbio/metadata/tests/data/valid/trailing-columns.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:12,017 copying skbio/metadata/tests/data/valid/unix-line-endings.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:12,020 copying skbio/metadata/tests/data/valid/windows-line-endings.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2025-10-16T09:09:12,022 creating build/lib.linux-armv7l-cpython-311/skbio/sequence 2025-10-16T09:09:12,023 copying skbio/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2025-10-16T09:09:12,027 copying skbio/sequence/_alphabet.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2025-10-16T09:09:12,031 copying skbio/sequence/_dna.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2025-10-16T09:09:12,035 copying skbio/sequence/_genetic_code.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2025-10-16T09:09:12,038 copying skbio/sequence/_grammared_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2025-10-16T09:09:12,042 copying skbio/sequence/_nucleotide_mixin.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2025-10-16T09:09:12,046 copying skbio/sequence/_protein.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2025-10-16T09:09:12,049 copying skbio/sequence/_repr.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2025-10-16T09:09:12,051 copying skbio/sequence/_rna.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2025-10-16T09:09:12,054 copying skbio/sequence/_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2025-10-16T09:09:12,058 copying skbio/sequence/_substitution.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2025-10-16T09:09:12,061 copying skbio/sequence/distance.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2025-10-16T09:09:12,064 creating build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2025-10-16T09:09:12,065 copying skbio/sequence/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2025-10-16T09:09:12,067 copying skbio/sequence/tests/test_alphabet.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2025-10-16T09:09:12,070 copying skbio/sequence/tests/test_distance.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2025-10-16T09:09:12,072 copying skbio/sequence/tests/test_dna.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2025-10-16T09:09:12,075 copying skbio/sequence/tests/test_genetic_code.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2025-10-16T09:09:12,077 copying skbio/sequence/tests/test_grammared_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2025-10-16T09:09:12,081 copying skbio/sequence/tests/test_nucleotide_sequences.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2025-10-16T09:09:12,084 copying skbio/sequence/tests/test_protein.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2025-10-16T09:09:12,087 copying skbio/sequence/tests/test_rna.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2025-10-16T09:09:12,089 copying skbio/sequence/tests/test_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2025-10-16T09:09:12,094 copying skbio/sequence/tests/test_substitution.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2025-10-16T09:09:12,097 creating build/lib.linux-armv7l-cpython-311/skbio/stats 2025-10-16T09:09:12,098 copying skbio/stats/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2025-10-16T09:09:12,100 copying skbio/stats/_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2025-10-16T09:09:12,102 copying skbio/stats/_subsample.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2025-10-16T09:09:12,105 copying skbio/stats/composition.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2025-10-16T09:09:12,109 copying skbio/stats/gradient.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2025-10-16T09:09:12,112 copying skbio/stats/power.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2025-10-16T09:09:12,115 creating build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2025-10-16T09:09:12,116 copying skbio/stats/distance/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2025-10-16T09:09:12,119 copying skbio/stats/distance/_anosim.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2025-10-16T09:09:12,122 copying skbio/stats/distance/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2025-10-16T09:09:12,125 copying skbio/stats/distance/_bioenv.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2025-10-16T09:09:12,128 copying skbio/stats/distance/_cutils.c -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2025-10-16T09:09:12,211 copying skbio/stats/distance/_cutils.pyx -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2025-10-16T09:09:12,214 copying skbio/stats/distance/_mantel.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2025-10-16T09:09:12,217 copying skbio/stats/distance/_permanova.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2025-10-16T09:09:12,220 copying skbio/stats/distance/_permdisp.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2025-10-16T09:09:12,223 copying skbio/stats/distance/_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2025-10-16T09:09:12,226 creating build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2025-10-16T09:09:12,227 copying skbio/stats/distance/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2025-10-16T09:09:12,230 copying skbio/stats/distance/tests/test_anosim.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2025-10-16T09:09:12,233 copying skbio/stats/distance/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2025-10-16T09:09:12,236 copying skbio/stats/distance/tests/test_bioenv.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2025-10-16T09:09:12,239 copying skbio/stats/distance/tests/test_mantel.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2025-10-16T09:09:12,243 copying skbio/stats/distance/tests/test_permanova.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2025-10-16T09:09:12,246 copying skbio/stats/distance/tests/test_permdisp.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2025-10-16T09:09:12,249 copying skbio/stats/distance/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2025-10-16T09:09:12,252 creating build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,253 copying skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,256 copying skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,260 copying skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,262 copying skbio/stats/distance/tests/data/df.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,265 copying skbio/stats/distance/tests/data/df_extra_column.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,268 copying skbio/stats/distance/tests/data/dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,270 copying skbio/stats/distance/tests/data/dm2.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,273 copying skbio/stats/distance/tests/data/dm3.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,275 copying skbio/stats/distance/tests/data/dm4.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,277 copying skbio/stats/distance/tests/data/dm_reordered.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,279 copying skbio/stats/distance/tests/data/exp_results.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,282 copying skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,284 copying skbio/stats/distance/tests/data/exp_results_single_column.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,286 copying skbio/stats/distance/tests/data/frameSeries_dm.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,290 copying skbio/stats/distance/tests/data/frameSeries_grouping.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,292 copying skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,295 copying skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,298 copying skbio/stats/distance/tests/data/moving_pictures_dm.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,301 copying skbio/stats/distance/tests/data/moving_pictures_mf.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,304 copying skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,306 copying skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,308 copying skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,310 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,312 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,314 copying skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,317 copying skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2025-10-16T09:09:12,319 creating build/lib.linux-armv7l-cpython-311/skbio/stats/evolve 2025-10-16T09:09:12,320 copying skbio/stats/evolve/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/evolve 2025-10-16T09:09:12,322 copying skbio/stats/evolve/_hommola.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/evolve 2025-10-16T09:09:12,324 creating build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/tests 2025-10-16T09:09:12,325 copying skbio/stats/evolve/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/tests 2025-10-16T09:09:12,328 copying skbio/stats/evolve/tests/test_hommola.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/tests 2025-10-16T09:09:12,330 creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2025-10-16T09:09:12,331 copying skbio/stats/ordination/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2025-10-16T09:09:12,334 copying skbio/stats/ordination/_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2025-10-16T09:09:12,337 copying skbio/stats/ordination/_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2025-10-16T09:09:12,339 copying skbio/stats/ordination/_cutils.c -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2025-10-16T09:09:12,398 copying skbio/stats/ordination/_cutils.pyx -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2025-10-16T09:09:12,401 copying skbio/stats/ordination/_ordination_results.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2025-10-16T09:09:12,404 copying skbio/stats/ordination/_principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2025-10-16T09:09:12,407 copying skbio/stats/ordination/_redundancy_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2025-10-16T09:09:12,410 copying skbio/stats/ordination/_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2025-10-16T09:09:12,413 creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2025-10-16T09:09:12,414 copying skbio/stats/ordination/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2025-10-16T09:09:12,416 copying skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2025-10-16T09:09:12,419 copying skbio/stats/ordination/tests/test_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2025-10-16T09:09:12,422 copying skbio/stats/ordination/tests/test_ordination_results.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2025-10-16T09:09:12,425 copying skbio/stats/ordination/tests/test_principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2025-10-16T09:09:12,428 copying skbio/stats/ordination/tests/test_redundancy_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2025-10-16T09:09:12,431 copying skbio/stats/ordination/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2025-10-16T09:09:12,434 creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,435 copying skbio/stats/ordination/tests/data/L&L_CA_data -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,437 copying skbio/stats/ordination/tests/data/PCoA_biplot_descriptors -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,439 copying skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,441 copying skbio/stats/ordination/tests/data/PCoA_sample_data -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,444 copying skbio/stats/ordination/tests/data/PCoA_sample_data_12dim -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,446 copying skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,448 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,450 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,452 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,455 copying skbio/stats/ordination/tests/data/PCoA_skbio -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,457 copying skbio/stats/ordination/tests/data/example2_X -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,459 copying skbio/stats/ordination/tests/data/example2_Y -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,461 copying skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,463 copying skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,465 copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,468 copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,470 copying skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,472 copying skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,474 copying skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,476 copying skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,479 copying skbio/stats/ordination/tests/data/example3_X -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,481 copying skbio/stats/ordination/tests/data/example3_Y -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,483 copying skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,486 copying skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,488 copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,490 copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,492 copying skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,495 copying skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,497 copying skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,499 copying skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,501 copying skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,504 copying skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,506 copying skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,508 copying skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,511 copying skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,513 copying skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,515 copying skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,517 copying skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,520 copying skbio/stats/ordination/tests/data/varechem.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,522 copying skbio/stats/ordination/tests/data/varespec.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2025-10-16T09:09:12,525 creating build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2025-10-16T09:09:12,526 copying skbio/stats/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2025-10-16T09:09:12,528 copying skbio/stats/tests/test_composition.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2025-10-16T09:09:12,532 copying skbio/stats/tests/test_gradient.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2025-10-16T09:09:12,536 copying skbio/stats/tests/test_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2025-10-16T09:09:12,538 copying skbio/stats/tests/test_ndarray.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2025-10-16T09:09:12,541 copying skbio/stats/tests/test_power.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2025-10-16T09:09:12,544 copying skbio/stats/tests/test_subsample.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2025-10-16T09:09:12,547 creating build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2025-10-16T09:09:12,548 copying skbio/stats/tests/data/cr_data_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2025-10-16T09:09:12,551 copying skbio/stats/tests/data/cr_data_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2025-10-16T09:09:12,553 copying skbio/stats/tests/data/cr_no_data_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2025-10-16T09:09:12,555 copying skbio/stats/tests/data/cr_no_data_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2025-10-16T09:09:12,557 copying skbio/stats/tests/data/gr_w_msg_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2025-10-16T09:09:12,559 copying skbio/stats/tests/data/gr_w_msg_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2025-10-16T09:09:12,561 copying skbio/stats/tests/data/gr_wo_msg_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2025-10-16T09:09:12,563 copying skbio/stats/tests/data/gr_wo_msg_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2025-10-16T09:09:12,565 copying skbio/stats/tests/data/vr_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2025-10-16T09:09:12,568 copying skbio/stats/tests/data/vr_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2025-10-16T09:09:12,570 copying skbio/stats/tests/data/vr_real_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2025-10-16T09:09:12,572 copying skbio/stats/tests/data/vr_real_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2025-10-16T09:09:12,574 creating build/lib.linux-armv7l-cpython-311/skbio/table 2025-10-16T09:09:12,575 copying skbio/table/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/table 2025-10-16T09:09:12,578 copying skbio/table/_augment.py -> build/lib.linux-armv7l-cpython-311/skbio/table 2025-10-16T09:09:12,581 copying skbio/table/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/table 2025-10-16T09:09:12,583 copying skbio/table/_tabular.py -> build/lib.linux-armv7l-cpython-311/skbio/table 2025-10-16T09:09:12,586 creating build/lib.linux-armv7l-cpython-311/skbio/table/tests 2025-10-16T09:09:12,587 copying skbio/table/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/table/tests 2025-10-16T09:09:12,589 copying skbio/table/tests/test_augment.py -> build/lib.linux-armv7l-cpython-311/skbio/table/tests 2025-10-16T09:09:12,592 copying skbio/table/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/table/tests 2025-10-16T09:09:12,595 copying skbio/table/tests/test_tabular.py -> build/lib.linux-armv7l-cpython-311/skbio/table/tests 2025-10-16T09:09:12,598 creating build/lib.linux-armv7l-cpython-311/skbio/tests 2025-10-16T09:09:12,599 copying skbio/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/tests 2025-10-16T09:09:12,601 copying skbio/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/tests 2025-10-16T09:09:12,603 copying skbio/tests/test_config.py -> build/lib.linux-armv7l-cpython-311/skbio/tests 2025-10-16T09:09:12,606 copying skbio/tests/test_workflow.py -> build/lib.linux-armv7l-cpython-311/skbio/tests 2025-10-16T09:09:12,608 creating build/lib.linux-armv7l-cpython-311/skbio/tree 2025-10-16T09:09:12,609 copying skbio/tree/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2025-10-16T09:09:12,613 copying skbio/tree/_c_me.c -> build/lib.linux-armv7l-cpython-311/skbio/tree 2025-10-16T09:09:12,687 copying skbio/tree/_c_me.pyx -> build/lib.linux-armv7l-cpython-311/skbio/tree 2025-10-16T09:09:12,691 copying skbio/tree/_c_nj.c -> build/lib.linux-armv7l-cpython-311/skbio/tree 2025-10-16T09:09:12,712 copying skbio/tree/_c_nj.pyx -> build/lib.linux-armv7l-cpython-311/skbio/tree 2025-10-16T09:09:12,714 copying skbio/tree/_compare.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2025-10-16T09:09:12,717 copying skbio/tree/_exception.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2025-10-16T09:09:12,720 copying skbio/tree/_majority_rule.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2025-10-16T09:09:12,723 copying skbio/tree/_me.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2025-10-16T09:09:12,727 copying skbio/tree/_nj.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2025-10-16T09:09:12,730 copying skbio/tree/_tree.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2025-10-16T09:09:12,736 copying skbio/tree/_upgma.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2025-10-16T09:09:12,739 copying skbio/tree/_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2025-10-16T09:09:12,741 creating build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2025-10-16T09:09:12,743 copying skbio/tree/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2025-10-16T09:09:12,745 copying skbio/tree/tests/test_compare.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2025-10-16T09:09:12,748 copying skbio/tree/tests/test_majority_rule.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2025-10-16T09:09:12,751 copying skbio/tree/tests/test_me.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2025-10-16T09:09:12,757 copying skbio/tree/tests/test_nj.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2025-10-16T09:09:12,760 copying skbio/tree/tests/test_tree.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2025-10-16T09:09:12,768 copying skbio/tree/tests/test_upgma.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2025-10-16T09:09:12,771 copying skbio/tree/tests/test_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2025-10-16T09:09:12,774 creating build/lib.linux-armv7l-cpython-311/skbio/util 2025-10-16T09:09:12,775 copying skbio/util/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2025-10-16T09:09:12,779 copying skbio/util/_array.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2025-10-16T09:09:12,783 copying skbio/util/_decorator.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2025-10-16T09:09:12,786 copying skbio/util/_docstring.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2025-10-16T09:09:12,789 copying skbio/util/_exception.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2025-10-16T09:09:12,792 copying skbio/util/_gpu.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2025-10-16T09:09:12,795 copying skbio/util/_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2025-10-16T09:09:12,798 copying skbio/util/_optionals.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2025-10-16T09:09:12,801 copying skbio/util/_plotting.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2025-10-16T09:09:12,804 copying skbio/util/_random.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2025-10-16T09:09:12,807 copying skbio/util/_testing.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2025-10-16T09:09:12,812 copying skbio/util/_typing.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2025-10-16T09:09:12,816 copying skbio/util/_warning.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2025-10-16T09:09:12,820 creating build/lib.linux-armv7l-cpython-311/skbio/util/tests 2025-10-16T09:09:12,821 copying skbio/util/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2025-10-16T09:09:12,824 copying skbio/util/tests/test_array.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2025-10-16T09:09:12,827 copying skbio/util/tests/test_decorator.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2025-10-16T09:09:12,830 copying skbio/util/tests/test_docstring.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2025-10-16T09:09:12,833 copying skbio/util/tests/test_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2025-10-16T09:09:12,836 copying skbio/util/tests/test_optionals.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2025-10-16T09:09:12,839 copying skbio/util/tests/test_plotting.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2025-10-16T09:09:12,842 copying skbio/util/tests/test_random.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2025-10-16T09:09:12,845 copying skbio/util/tests/test_testing.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2025-10-16T09:09:12,849 copying skbio/util/tests/test_warning.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2025-10-16T09:09:12,854 running build_ext 2025-10-16T09:09:12,862 building 'skbio.metadata._intersection' extension 2025-10-16T09:09:12,862 creating build/temp.linux-armv7l-cpython-311/skbio/metadata 2025-10-16T09:09:12,864 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/metadata/_intersection.c -o build/temp.linux-armv7l-cpython-311/skbio/metadata/_intersection.o 2025-10-16T09:09:26,694 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/metadata/_intersection.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/metadata/_intersection.cpython-311-arm-linux-gnueabihf.so 2025-10-16T09:09:26,824 building 'skbio.tree._c_nj' extension 2025-10-16T09:09:26,825 creating build/temp.linux-armv7l-cpython-311/skbio/tree 2025-10-16T09:09:26,826 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/tree/_c_nj.c -o build/temp.linux-armv7l-cpython-311/skbio/tree/_c_nj.o -I. -fopenmp 2025-10-16T09:09:39,173 In function ‘__pyx_pf_5skbio_4tree_5_c_nj_2nj_minq_cy’, 2025-10-16T09:09:39,174 inlined from ‘__pyx_fuse_0__pyx_pw_5skbio_4tree_5_c_nj_3nj_minq_cy’ at skbio/tree/_c_nj.c:17902:13: 2025-10-16T09:09:39,191 skbio/tree/_c_nj.c:18079:16: warning: ‘__pyx_v_min_j’ may be used uninitialized [-Wmaybe-uninitialized] 2025-10-16T09:09:39,192 18079 | __pyx_t_14 = PyLong_FromSsize_t(__pyx_v_min_j); if (unlikely(!__pyx_t_14)) __PYX_ERR(0, 72, __pyx_L1_error) 2025-10-16T09:09:39,192 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-16T09:09:39,193 skbio/tree/_c_nj.c: In function ‘__pyx_fuse_0__pyx_pw_5skbio_4tree_5_c_nj_3nj_minq_cy’: 2025-10-16T09:09:39,209 skbio/tree/_c_nj.c:17920:14: note: ‘__pyx_v_min_j’ was declared here 2025-10-16T09:09:39,210 17920 | Py_ssize_t __pyx_v_min_j; 2025-10-16T09:09:39,210 | ^~~~~~~~~~~~~ 2025-10-16T09:09:39,211 In function ‘__pyx_pf_5skbio_4tree_5_c_nj_2nj_minq_cy’, 2025-10-16T09:09:39,212 inlined from ‘__pyx_fuse_0__pyx_pw_5skbio_4tree_5_c_nj_3nj_minq_cy’ at skbio/tree/_c_nj.c:17902:13: 2025-10-16T09:09:39,226 skbio/tree/_c_nj.c:18077:16: warning: ‘__pyx_v_min_i’ may be used uninitialized [-Wmaybe-uninitialized] 2025-10-16T09:09:39,227 18077 | __pyx_t_13 = PyLong_FromSsize_t(__pyx_v_min_i); if (unlikely(!__pyx_t_13)) __PYX_ERR(0, 72, __pyx_L1_error) 2025-10-16T09:09:39,228 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-16T09:09:39,228 skbio/tree/_c_nj.c: In function ‘__pyx_fuse_0__pyx_pw_5skbio_4tree_5_c_nj_3nj_minq_cy’: 2025-10-16T09:09:39,245 skbio/tree/_c_nj.c:17919:14: note: ‘__pyx_v_min_i’ was declared here 2025-10-16T09:09:39,245 17919 | Py_ssize_t __pyx_v_min_i; 2025-10-16T09:09:39,246 | ^~~~~~~~~~~~~ 2025-10-16T09:09:39,461 In function ‘__pyx_pf_5skbio_4tree_5_c_nj_4nj_minq_cy’, 2025-10-16T09:09:39,462 inlined from ‘__pyx_fuse_1__pyx_pw_5skbio_4tree_5_c_nj_5nj_minq_cy’ at skbio/tree/_c_nj.c:18183:13: 2025-10-16T09:09:39,477 skbio/tree/_c_nj.c:18360:16: warning: ‘__pyx_v_min_j’ may be used uninitialized [-Wmaybe-uninitialized] 2025-10-16T09:09:39,478 18360 | __pyx_t_14 = PyLong_FromSsize_t(__pyx_v_min_j); if (unlikely(!__pyx_t_14)) __PYX_ERR(0, 72, __pyx_L1_error) 2025-10-16T09:09:39,479 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-16T09:09:39,479 skbio/tree/_c_nj.c: In function ‘__pyx_fuse_1__pyx_pw_5skbio_4tree_5_c_nj_5nj_minq_cy’: 2025-10-16T09:09:39,496 skbio/tree/_c_nj.c:18201:14: note: ‘__pyx_v_min_j’ was declared here 2025-10-16T09:09:39,497 18201 | Py_ssize_t __pyx_v_min_j; 2025-10-16T09:09:39,498 | ^~~~~~~~~~~~~ 2025-10-16T09:09:39,498 In function ‘__pyx_pf_5skbio_4tree_5_c_nj_4nj_minq_cy’, 2025-10-16T09:09:39,499 inlined from ‘__pyx_fuse_1__pyx_pw_5skbio_4tree_5_c_nj_5nj_minq_cy’ at skbio/tree/_c_nj.c:18183:13: 2025-10-16T09:09:39,514 skbio/tree/_c_nj.c:18358:16: warning: ‘__pyx_v_min_i’ may be used uninitialized [-Wmaybe-uninitialized] 2025-10-16T09:09:39,514 18358 | __pyx_t_13 = PyLong_FromSsize_t(__pyx_v_min_i); if (unlikely(!__pyx_t_13)) __PYX_ERR(0, 72, __pyx_L1_error) 2025-10-16T09:09:39,515 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-16T09:09:39,515 skbio/tree/_c_nj.c: In function ‘__pyx_fuse_1__pyx_pw_5skbio_4tree_5_c_nj_5nj_minq_cy’: 2025-10-16T09:09:39,532 skbio/tree/_c_nj.c:18200:14: note: ‘__pyx_v_min_i’ was declared here 2025-10-16T09:09:39,533 18200 | Py_ssize_t __pyx_v_min_i; 2025-10-16T09:09:39,533 | ^~~~~~~~~~~~~ 2025-10-16T09:09:46,309 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/tree/_c_nj.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/tree/_c_nj.cpython-311-arm-linux-gnueabihf.so -fopenmp 2025-10-16T09:09:46,449 building 'skbio.tree._c_me' extension 2025-10-16T09:09:46,450 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/tree/_c_me.c -o build/temp.linux-armv7l-cpython-311/skbio/tree/_c_me.o -I. -fopenmp 2025-10-16T09:10:12,664 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/tree/_c_me.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/tree/_c_me.cpython-311-arm-linux-gnueabihf.so -fopenmp 2025-10-16T09:10:12,821 building 'skbio.diversity._phylogenetic' extension 2025-10-16T09:10:12,822 creating build/temp.linux-armv7l-cpython-311/skbio/diversity 2025-10-16T09:10:12,823 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/diversity/_phylogenetic.c -o build/temp.linux-armv7l-cpython-311/skbio/diversity/_phylogenetic.o 2025-10-16T09:10:20,002 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/diversity/_phylogenetic.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/diversity/_phylogenetic.cpython-311-arm-linux-gnueabihf.so 2025-10-16T09:10:20,113 building 'skbio.stats.ordination._cutils' extension 2025-10-16T09:10:20,114 creating build/temp.linux-armv7l-cpython-311/skbio/stats/ordination 2025-10-16T09:10:20,115 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/stats/ordination/_cutils.c -o build/temp.linux-armv7l-cpython-311/skbio/stats/ordination/_cutils.o -I. -fopenmp 2025-10-16T09:10:26,019 skbio/stats/ordination/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_10ordination_7_cutils_8e_matrix_means_cy._omp_fn.0’: 2025-10-16T09:10:26,036 skbio/stats/ordination/_cutils.c:18850:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized] 2025-10-16T09:10:26,037 18850 | __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno; 2025-10-16T09:10:26,038 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2025-10-16T09:10:26,054 skbio/stats/ordination/_cutils.c:18563:7: note: ‘__pyx_clineno’ was declared here 2025-10-16T09:10:26,054 18563 | int __pyx_clineno = 0; 2025-10-16T09:10:26,055 | ^~~~~~~~~~~~~ 2025-10-16T09:10:26,133 skbio/stats/ordination/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_10ordination_7_cutils_6e_matrix_means_cy._omp_fn.0’: 2025-10-16T09:10:26,150 skbio/stats/ordination/_cutils.c:18295:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized] 2025-10-16T09:10:26,150 18295 | __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno; 2025-10-16T09:10:26,151 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2025-10-16T09:10:26,166 skbio/stats/ordination/_cutils.c:18008:7: note: ‘__pyx_clineno’ was declared here 2025-10-16T09:10:26,167 18008 | int __pyx_clineno = 0; 2025-10-16T09:10:26,168 | ^~~~~~~~~~~~~ 2025-10-16T09:10:46,629 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/stats/ordination/_cutils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_cutils.cpython-311-arm-linux-gnueabihf.so -fopenmp 2025-10-16T09:10:46,790 building 'skbio.stats.distance._cutils' extension 2025-10-16T09:10:46,791 creating build/temp.linux-armv7l-cpython-311/skbio/stats/distance 2025-10-16T09:10:46,792 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/stats/distance/_cutils.c -o build/temp.linux-armv7l-cpython-311/skbio/stats/distance/_cutils.o -I. -fopenmp 2025-10-16T09:10:54,833 skbio/stats/distance/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_8distance_7_cutils_38permanova_f_stat_sW_cy._omp_fn.0’: 2025-10-16T09:10:54,862 skbio/stats/distance/_cutils.c:28434:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized] 2025-10-16T09:10:54,862 28434 | __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno; 2025-10-16T09:10:54,863 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2025-10-16T09:10:54,890 skbio/stats/distance/_cutils.c:28042:7: note: ‘__pyx_clineno’ was declared here 2025-10-16T09:10:54,891 28042 | int __pyx_clineno = 0; 2025-10-16T09:10:54,892 | ^~~~~~~~~~~~~ 2025-10-16T09:10:55,026 skbio/stats/distance/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_8distance_7_cutils_36permanova_f_stat_sW_cy._omp_fn.0’: 2025-10-16T09:10:55,055 skbio/stats/distance/_cutils.c:27786:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized] 2025-10-16T09:10:55,055 27786 | __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno; 2025-10-16T09:10:55,056 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2025-10-16T09:10:55,083 skbio/stats/distance/_cutils.c:27394:7: note: ‘__pyx_clineno’ was declared here 2025-10-16T09:10:55,083 27394 | int __pyx_clineno = 0; 2025-10-16T09:10:55,084 | ^~~~~~~~~~~~~ 2025-10-16T09:11:25,990 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/stats/distance/_cutils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_cutils.cpython-311-arm-linux-gnueabihf.so -fopenmp 2025-10-16T09:11:26,170 building 'skbio.alignment._cutils' extension 2025-10-16T09:11:26,170 creating build/temp.linux-armv7l-cpython-311/skbio/alignment 2025-10-16T09:11:26,171 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-build-env-_1xe0it1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/alignment/_cutils.c -o build/temp.linux-armv7l-cpython-311/skbio/alignment/_cutils.o -I. -fopenmp 2025-10-16T09:11:26,868 skbio/alignment/_cutils.c: In function ‘__pyx_pf_5skbio_9alignment_7_cutils_12_fill_linear_matrix’: 2025-10-16T09:11:26,884 skbio/alignment/_cutils.c:18206:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-10-16T09:11:26,884 18206 | __pyx_v_row = (&(*((float const *) ( /* dim=1 */ ((char *) (((float const *) ( /* dim=0 */ (__pyx_v_query.data + __pyx_t_5 * __pyx_v_query.strides[0]) )) + __pyx_t_6)) )))); 2025-10-16T09:11:26,885 | ^ 2025-10-16T09:11:26,895 skbio/alignment/_cutils.c: In function ‘__pyx_pf_5skbio_9alignment_7_cutils_14_fill_linear_matrix’: 2025-10-16T09:11:26,911 skbio/alignment/_cutils.c:18513:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-10-16T09:11:26,912 18513 | __pyx_v_row = (&(*((double const *) ( /* dim=1 */ ((char *) (((double const *) ( /* dim=0 */ (__pyx_v_query.data + __pyx_t_5 * __pyx_v_query.strides[0]) )) + __pyx_t_6)) )))); 2025-10-16T09:11:26,912 | ^ 2025-10-16T09:11:26,978 skbio/alignment/_cutils.c: In function ‘__pyx_pf_5skbio_9alignment_7_cutils_18_fill_affine_matrices’: 2025-10-16T09:11:26,996 skbio/alignment/_cutils.c:19788:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-10-16T09:11:26,996 19788 | __pyx_v_row = (&(*((float const *) ( /* dim=1 */ ((char *) (((float const *) ( /* dim=0 */ (__pyx_v_query.data + __pyx_t_5 * __pyx_v_query.strides[0]) )) + __pyx_t_6)) )))); 2025-10-16T09:11:26,997 | ^ 2025-10-16T09:11:27,010 skbio/alignment/_cutils.c: In function ‘__pyx_pf_5skbio_9alignment_7_cutils_20_fill_affine_matrices’: 2025-10-16T09:11:27,028 skbio/alignment/_cutils.c:20183:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-10-16T09:11:27,028 20183 | __pyx_v_row = (&(*((double const *) ( /* dim=1 */ ((char *) (((double const *) ( /* dim=0 */ (__pyx_v_query.data + __pyx_t_5 * __pyx_v_query.strides[0]) )) + __pyx_t_6)) )))); 2025-10-16T09:11:27,029 | ^ 2025-10-16T09:11:58,526 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/alignment/_cutils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/alignment/_cutils.cpython-311-arm-linux-gnueabihf.so -fopenmp 2025-10-16T09:11:58,700 installing to build/bdist.linux-armv7l/wheel 2025-10-16T09:11:58,701 running install 2025-10-16T09:11:58,727 running install_lib 2025-10-16T09:11:58,735 creating build/bdist.linux-armv7l/wheel 2025-10-16T09:11:58,738 creating build/bdist.linux-armv7l/wheel/skbio 2025-10-16T09:11:58,739 copying build/lib.linux-armv7l-cpython-311/skbio/workflow.py -> build/bdist.linux-armv7l/wheel/./skbio 2025-10-16T09:11:58,742 creating build/bdist.linux-armv7l/wheel/skbio/binaries 2025-10-16T09:11:58,743 copying build/lib.linux-armv7l-cpython-311/skbio/binaries/_distance.py -> build/bdist.linux-armv7l/wheel/./skbio/binaries 2025-10-16T09:11:58,746 creating build/bdist.linux-armv7l/wheel/skbio/binaries/tests 2025-10-16T09:11:58,747 copying build/lib.linux-armv7l-cpython-311/skbio/binaries/tests/test_util.py -> build/bdist.linux-armv7l/wheel/./skbio/binaries/tests 2025-10-16T09:11:58,749 copying build/lib.linux-armv7l-cpython-311/skbio/binaries/_util.py -> build/bdist.linux-armv7l/wheel/./skbio/binaries 2025-10-16T09:11:58,751 copying build/lib.linux-armv7l-cpython-311/skbio/binaries/_ordination.py -> build/bdist.linux-armv7l/wheel/./skbio/binaries 2025-10-16T09:11:58,753 copying build/lib.linux-armv7l-cpython-311/skbio/binaries/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/binaries 2025-10-16T09:11:58,756 creating build/bdist.linux-armv7l/wheel/skbio/util 2025-10-16T09:11:58,757 copying build/lib.linux-armv7l-cpython-311/skbio/util/_typing.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2025-10-16T09:11:58,759 copying build/lib.linux-armv7l-cpython-311/skbio/util/_optionals.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2025-10-16T09:11:58,761 copying build/lib.linux-armv7l-cpython-311/skbio/util/_plotting.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2025-10-16T09:11:58,763 copying build/lib.linux-armv7l-cpython-311/skbio/util/_docstring.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2025-10-16T09:11:58,765 copying build/lib.linux-armv7l-cpython-311/skbio/util/_warning.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2025-10-16T09:11:58,766 copying build/lib.linux-armv7l-cpython-311/skbio/util/_random.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2025-10-16T09:11:58,768 copying build/lib.linux-armv7l-cpython-311/skbio/util/_testing.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2025-10-16T09:11:58,772 creating build/bdist.linux-armv7l/wheel/skbio/util/tests 2025-10-16T09:11:58,773 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_array.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2025-10-16T09:11:58,776 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_misc.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2025-10-16T09:11:58,778 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_testing.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2025-10-16T09:11:58,780 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_optionals.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2025-10-16T09:11:58,782 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_plotting.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2025-10-16T09:11:58,784 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_docstring.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2025-10-16T09:11:58,786 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_random.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2025-10-16T09:11:58,788 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2025-10-16T09:11:58,790 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_decorator.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2025-10-16T09:11:58,792 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_warning.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2025-10-16T09:11:58,794 copying build/lib.linux-armv7l-cpython-311/skbio/util/_misc.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2025-10-16T09:11:58,796 copying build/lib.linux-armv7l-cpython-311/skbio/util/_decorator.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2025-10-16T09:11:58,799 copying build/lib.linux-armv7l-cpython-311/skbio/util/_gpu.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2025-10-16T09:11:58,801 copying build/lib.linux-armv7l-cpython-311/skbio/util/_array.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2025-10-16T09:11:58,803 copying build/lib.linux-armv7l-cpython-311/skbio/util/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2025-10-16T09:11:58,805 copying build/lib.linux-armv7l-cpython-311/skbio/util/_exception.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2025-10-16T09:11:58,808 creating build/bdist.linux-armv7l/wheel/skbio/embedding 2025-10-16T09:11:58,809 copying build/lib.linux-armv7l-cpython-311/skbio/embedding/_protein.py -> build/bdist.linux-armv7l/wheel/./skbio/embedding 2025-10-16T09:11:58,812 creating build/bdist.linux-armv7l/wheel/skbio/embedding/tests 2025-10-16T09:11:58,813 creating build/bdist.linux-armv7l/wheel/skbio/embedding/tests/data 2025-10-16T09:11:58,815 copying build/lib.linux-armv7l-cpython-311/skbio/embedding/tests/data/embed1.txt.npy -> build/bdist.linux-armv7l/wheel/./skbio/embedding/tests/data 2025-10-16T09:11:58,822 copying build/lib.linux-armv7l-cpython-311/skbio/embedding/tests/test_embedding.py -> build/bdist.linux-armv7l/wheel/./skbio/embedding/tests 2025-10-16T09:11:58,825 copying build/lib.linux-armv7l-cpython-311/skbio/embedding/tests/test_protein.py -> build/bdist.linux-armv7l/wheel/./skbio/embedding/tests 2025-10-16T09:11:58,827 copying build/lib.linux-armv7l-cpython-311/skbio/embedding/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/embedding/tests 2025-10-16T09:11:58,829 copying build/lib.linux-armv7l-cpython-311/skbio/embedding/_embedding.py -> build/bdist.linux-armv7l/wheel/./skbio/embedding 2025-10-16T09:11:58,831 copying build/lib.linux-armv7l-cpython-311/skbio/embedding/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/embedding 2025-10-16T09:11:58,834 creating build/bdist.linux-armv7l/wheel/skbio/sequence 2025-10-16T09:11:58,835 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_substitution.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2025-10-16T09:11:58,838 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_protein.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2025-10-16T09:11:58,840 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_nucleotide_mixin.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2025-10-16T09:11:58,842 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_rna.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2025-10-16T09:11:58,845 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_repr.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2025-10-16T09:11:58,847 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_sequence.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2025-10-16T09:11:58,851 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_grammared_sequence.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2025-10-16T09:11:58,854 creating build/bdist.linux-armv7l/wheel/skbio/sequence/tests 2025-10-16T09:11:58,856 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_dna.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2025-10-16T09:11:58,858 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_substitution.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2025-10-16T09:11:58,860 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_nucleotide_sequences.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2025-10-16T09:11:58,863 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_distance.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2025-10-16T09:11:58,865 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_alphabet.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2025-10-16T09:11:58,868 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_grammared_sequence.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2025-10-16T09:11:58,871 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_protein.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2025-10-16T09:11:58,873 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_genetic_code.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2025-10-16T09:11:58,875 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_rna.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2025-10-16T09:11:58,877 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_sequence.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2025-10-16T09:11:58,881 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2025-10-16T09:11:58,883 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_alphabet.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2025-10-16T09:11:58,885 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/distance.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2025-10-16T09:11:58,887 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_genetic_code.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2025-10-16T09:11:58,890 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2025-10-16T09:11:58,893 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_dna.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2025-10-16T09:11:58,896 creating build/bdist.linux-armv7l/wheel/skbio/metadata 2025-10-16T09:11:58,897 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_metadata.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2025-10-16T09:11:58,900 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/base.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2025-10-16T09:11:58,902 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_enan.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2025-10-16T09:11:58,904 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_mixin.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2025-10-16T09:11:58,907 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_repr.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2025-10-16T09:11:58,909 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_intersection.pyx -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2025-10-16T09:11:58,911 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/io.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2025-10-16T09:11:58,914 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_testing.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2025-10-16T09:11:58,918 creating build/bdist.linux-armv7l/wheel/skbio/metadata/tests 2025-10-16T09:11:58,919 creating build/bdist.linux-armv7l/wheel/skbio/metadata/tests/data 2025-10-16T09:11:58,922 creating build/bdist.linux-armv7l/wheel/skbio/metadata/tests/data/valid 2025-10-16T09:11:58,923 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/case-insensitive-types-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,925 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/single-id.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,927 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/column-order.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,929 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/windows-line-endings.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,930 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/all-cells-padded.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,932 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/partial-types-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,934 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/complete-types-directive_w_sk.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,936 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/empty-types-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,938 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/comments.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,939 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/simple.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,941 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/jagged.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,943 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/single-column.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,944 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/BOM-simple.txt -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,946 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/missing-insdc-no-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,948 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/numeric-column.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,949 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/override-insdc.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,951 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/leading-trailing-whitespace.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,953 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/missing-insdc.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,955 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/no-id-or-column-name-type-cast.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,956 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/empty-rows.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,958 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/no-columns.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,960 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/qiita-preparation-information.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,962 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/mac-line-endings.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,964 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/unix-line-endings.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,966 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/complete-types-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,967 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/trailing-columns.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,969 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/missing-data.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,971 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/no-newline-at-eof.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,973 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/simple-with-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,975 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/simple.txt -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,976 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/rows-shorter-than-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,978 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/minimal.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,980 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/biom-observation-metadata.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,982 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/qiime1.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,983 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/qiita-sample-information.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,985 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/recommended-ids.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,987 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/non-standard-characters.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,988 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/jagged-trailing-columns.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2025-10-16T09:11:58,991 creating build/bdist.linux-armv7l/wheel/skbio/metadata/tests/data/invalid 2025-10-16T09:11:58,992 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/data-longer-than-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:58,994 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/non-utf-8.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:58,996 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/duplicate-column-names.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:58,998 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/qiime1-empty.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,000 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/column-name-conflicts-with-id-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,002 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/directive-longer-than-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,004 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/empty-column-name.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,005 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/empty-id.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,007 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/directive-before-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,009 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/simple-utf-16be.txt -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,011 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/empty-file -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,012 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/id-conflicts-with-id-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,014 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/unrecognized-column-type.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,016 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/directive-after-directives-section.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,018 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/types-directive-non-numeric.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,020 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/header-only-with-comments-and-empty-rows.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,022 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/simple-utf-16le.txt -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,023 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/whitespace-only-column-name.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,025 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/duplicate-column-names-with-whitespace.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,027 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/missing-unknown-scheme.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,028 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/duplicate-ids-with-whitespace.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,030 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/header-only.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,032 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/comments-and-empty-rows-only.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,034 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/invalid-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,035 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/whitespace-only-id.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,037 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/unrecognized-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,039 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/duplicate-directives.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,041 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/duplicate-ids.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2025-10-16T09:11:59,043 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_missing.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests 2025-10-16T09:11:59,045 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_metadata.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests 2025-10-16T09:11:59,048 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_io.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests 2025-10-16T09:11:59,051 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_metadata_column.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests 2025-10-16T09:11:59,054 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_intersection.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests 2025-10-16T09:11:59,056 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_interval.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests 2025-10-16T09:11:59,059 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_mixin.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests 2025-10-16T09:11:59,061 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests 2025-10-16T09:11:59,063 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_enan.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests 2025-10-16T09:11:59,064 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_intersection.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2025-10-16T09:11:59,078 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/missing.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2025-10-16T09:11:59,080 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_intersection.c -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2025-10-16T09:11:59,095 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2025-10-16T09:11:59,097 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_interval.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2025-10-16T09:11:59,100 copying build/lib.linux-armv7l-cpython-311/skbio/_base.py -> build/bdist.linux-armv7l/wheel/./skbio 2025-10-16T09:11:59,102 creating build/bdist.linux-armv7l/wheel/skbio/alignment 2025-10-16T09:11:59,103 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_cutils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2025-10-16T09:11:59,129 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2025-10-16T09:11:59,132 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_score.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2025-10-16T09:11:59,134 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_path.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2025-10-16T09:11:59,137 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_repr.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2025-10-16T09:11:59,140 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_pair.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2025-10-16T09:11:59,144 creating build/bdist.linux-armv7l/wheel/skbio/alignment/tests 2025-10-16T09:11:59,145 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_tabular_msa.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests 2025-10-16T09:11:59,151 creating build/bdist.linux-armv7l/wheel/skbio/alignment/tests/data 2025-10-16T09:11:59,152 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data/il6.prot.aln -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests/data 2025-10-16T09:11:59,154 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data/insulin.faa -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests/data 2025-10-16T09:11:59,156 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data/il6.nucl.aln -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests/data 2025-10-16T09:11:59,159 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data/16s.frn -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests/data 2025-10-16T09:11:59,161 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_score.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests 2025-10-16T09:11:59,164 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_pairwise.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests 2025-10-16T09:11:59,167 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_pair.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests 2025-10-16T09:11:59,170 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_path.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests 2025-10-16T09:11:59,173 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests 2025-10-16T09:11:59,175 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests 2025-10-16T09:11:59,177 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_tabular_msa.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2025-10-16T09:11:59,181 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_cutils.pyx -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2025-10-16T09:11:59,183 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_indexing.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2025-10-16T09:11:59,186 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_pairwise.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2025-10-16T09:11:59,188 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2025-10-16T09:11:59,191 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_cutils.c -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2025-10-16T09:11:59,217 copying build/lib.linux-armv7l-cpython-311/skbio/_config.py -> build/bdist.linux-armv7l/wheel/./skbio 2025-10-16T09:11:59,220 creating build/bdist.linux-armv7l/wheel/skbio/tests 2025-10-16T09:11:59,221 copying build/lib.linux-armv7l-cpython-311/skbio/tests/test_base.py -> build/bdist.linux-armv7l/wheel/./skbio/tests 2025-10-16T09:11:59,223 copying build/lib.linux-armv7l-cpython-311/skbio/tests/test_config.py -> build/bdist.linux-armv7l/wheel/./skbio/tests 2025-10-16T09:11:59,225 copying build/lib.linux-armv7l-cpython-311/skbio/tests/test_workflow.py -> build/bdist.linux-armv7l/wheel/./skbio/tests 2025-10-16T09:11:59,227 copying build/lib.linux-armv7l-cpython-311/skbio/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/tests 2025-10-16T09:11:59,229 creating build/bdist.linux-armv7l/wheel/skbio/io 2025-10-16T09:11:59,231 copying build/lib.linux-armv7l-cpython-311/skbio/io/_fileobject.py -> build/bdist.linux-armv7l/wheel/./skbio/io 2025-10-16T09:11:59,233 creating build/bdist.linux-armv7l/wheel/skbio/io/format 2025-10-16T09:11:59,234 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/embl.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:11:59,238 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/genbank.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:11:59,241 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/clustal.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:11:59,243 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/_blast.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:11:59,245 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/blast6.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:11:59,247 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/biom.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:11:59,249 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/_base.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:11:59,252 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/embed.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:11:59,254 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/phylip.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:11:59,256 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/stockholm.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:11:59,259 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/blast7.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:11:59,262 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/newick.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:11:59,264 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/fasta.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:11:59,267 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/gff3.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:11:59,271 creating build/bdist.linux-armv7l/wheel/skbio/io/format/tests 2025-10-16T09:11:59,273 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_clustal.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:11:59,277 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_base.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:11:59,280 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_embl.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:11:59,283 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_stockholm.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:11:59,286 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_biom.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:11:59,289 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_sample_metadata.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:11:59,291 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_gff3.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:11:59,302 creating build/bdist.linux-armv7l/wheel/skbio/io/format/tests/data 2025-10-16T09:11:59,303 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/longreads_as_illumina.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,306 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,308 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,310 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,313 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,315 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_example2_scores -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,318 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,320 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_seq_too_short -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,322 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,324 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,327 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,329 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/genbank_single_record_lower -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,332 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_default_multi_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,334 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/legacy9_and_blast7_default -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,336 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_ws_lines_between_records -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,338 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,340 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,343 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_single_record -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,345 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,347 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_3_seqs_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,349 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,352 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_invalid_for_sniffer -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,354 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_custom_multi_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,356 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_qual_null.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,358 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_legacy_format -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,360 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,363 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,365 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,367 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_runon_references_mixed -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,369 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,371 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_data_only -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,373 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,375 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,378 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_multi_whitespace_stripping -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,380 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_default_single_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,382 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error3 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,384 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/genbank_single_record_upper -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,386 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sample-metadata-comments-mixed-case.tsv -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,388 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,390 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_invalid_column_types -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,392 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error15 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,394 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,396 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_trunc_at_plus.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,398 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_tabular_msa_different_type -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,401 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_missing_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,403 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_custom_minimal -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,405 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,407 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,409 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_id_whitespace_replacement_none -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,411 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_ws_lines_end_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,413 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/tsv_8_fields -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,416 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error5 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,419 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,421 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qseq_multi_seq_illumina1.3 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,423 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,426 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_single_seq_short -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,428 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qseq_invalid_x -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,430 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sample-metadata-comments-comment-char-id.tsv -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,432 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,434 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,436 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_blank_lines_between_records -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,438 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error23 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,440 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/prot.emb -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,449 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,451 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,453 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_w_beginning_whitespace -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,455 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_double_seq.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,457 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_mixed_qual_scores -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,460 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_single_record_simple -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,462 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_malformed_gf_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,464 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qseq_invalid_lane -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,467 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,469 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,471 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,473 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_multi_ws_lines_between_records -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,475 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,477 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_feature_level_record_no_FT -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,480 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,482 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_whitespace_only_lines -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,484 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,485 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_all_data_types -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,487 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_qual_vtab.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,489 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace-split-id.tsv -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,490 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_invalid_gibberish -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,492 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error1 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,494 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_custom_minimal -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,496 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_custom_mixed_nans -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,498 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_3_seqs_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,499 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,501 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,503 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embed2.txt.npy -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,509 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,511 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_trunc_at_seq.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,513 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,515 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/misc_rna_original_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,516 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,518 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_max_width_5 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,520 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_blank_line_within_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,522 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_blank_lines -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,523 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_invalid_too_many_columns -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,525 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/gff3_multi_record -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,527 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/prot_vec.emb -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,529 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_runon_references -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,531 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_invalid_data_type -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,533 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/genbank_6_blanks_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,534 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_6_blanks_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,536 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,538 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_multi_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,540 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_description_newline_replacement_none -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,541 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_multiple_trees -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,543 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qseq_invalid_tile -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,546 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_zero_seqs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,548 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/genbank_multi_records -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,551 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_duplicate_sequence_names -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,553 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,556 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/tsv_10_fields -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,559 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,561 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_single_tree_without_id -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,562 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error2 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,565 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_diff_ids.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,566 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,568 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,570 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_blanks_end_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,572 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,573 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_qual_scores_negative -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,575 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,577 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_long_qual.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,578 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/wrapping_as_illumina.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,580 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_rna -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,582 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_ws_lines_between_records -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,584 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_missing_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,585 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_multi_seq_roundtrip -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,587 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_multiple_references -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,589 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_example3_scores -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,591 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,593 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error17 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,596 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_missing_seq_data -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,598 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_multi_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,600 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_uniprot_record -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,603 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,606 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,609 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,612 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,613 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_seq_too_long -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,615 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,617 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_missing_rn_tag -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,618 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,620 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,622 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_missing_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,623 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/taxdump_nodes.dmp -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,625 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,627 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error19 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,629 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error4 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,631 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_invalid_number_of_columns -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,633 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qseq_invalid_filter -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,635 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_max_width_5 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,636 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_trunc_in_seq.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,638 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_legacy_format -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,640 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_missing_reference_items -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,642 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,644 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,645 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,647 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,649 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/genbank_single_record -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,651 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_trunc_in_qual.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,652 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_whitespace_only_lines -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,654 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error7 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,656 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_multi_records -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,658 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_single_seq_long -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,660 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,661 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_constructed -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,663 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_multiple_msa -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,665 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_metadata_only -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,666 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_malformed_gs_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,668 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_invalid_unrecognized_field -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,670 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,672 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_feature_level_record -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,674 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_qual_space.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,675 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_zero_seq_len -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,677 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error20 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,679 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_custom_mixed_nans -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,681 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/wrapping_original_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,683 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/tiny_embedding_file.npz -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,743 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_invalid_no_data -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,747 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_single_rna_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,749 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error18 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,751 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_duplicate_gr -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,753 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_default_multi_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,755 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_multi_seq_sanger -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,757 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,760 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_extensive_mixed -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,762 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_single_record_upper -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,764 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_extensive -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,766 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_empty_line_after_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,768 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_tabular_msa_different_type -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,770 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dna_3_seqs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,772 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,775 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_multi_line_tree_no_id -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,777 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_blank_line_after_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,779 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/genbank_w_beginning_whitespace -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,781 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_qual_del.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,783 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_single_record_lower -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,786 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error12 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,788 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/legacy9_invalid_differing_fields -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,791 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_blanks_end_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,794 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,796 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,799 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,801 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,804 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_invalid_differing_fields -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,806 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_3_seqs_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,809 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,811 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sample-metadata-comments.tsv -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,814 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error14 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,816 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,819 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_short_qual.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,821 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,824 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_variable_length_ids -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,827 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qseq_single_seq_sanger -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,829 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_blank_sequence -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,832 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_multiple_multi_line_trees -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,835 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_header_too_long -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,837 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_6_ws_lines_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,840 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,843 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_blank_within_qual -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,846 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_max_width_1 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,848 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,851 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,853 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_qual_scores_float -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,856 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_max_width_1 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,859 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_trunc_in_plus.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,861 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,864 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,867 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,869 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,872 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/legacy9_single_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,874 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_spaces.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,877 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,879 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_default_single_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,882 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/taxdump_names.dmp -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,885 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_5_blanks_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,887 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_multi_blank_between_records -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,889 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/whitespace_only -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,891 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,893 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_header_too_short -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,895 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_5_blanks_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,897 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_ws_line_after_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,899 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_qual_escape.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,901 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error24 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,903 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,905 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/gff3_bad_missing_directive -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,907 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_prot_seqs_odd_labels -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,909 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_single_reference -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,912 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_custom_single_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,914 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_double_qual.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,916 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,919 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_no_data -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,921 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,923 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,926 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_blank_after_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,928 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qseq_invalid_y -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,930 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace.tsv -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,933 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_custom_multi_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,935 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_single_tree_with_id -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,937 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error9 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,939 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/gff3_dna -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,941 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,943 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_single_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,945 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_minimal -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,947 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error11 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,949 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,952 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/longreads_original_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,954 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_malformed_data_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,956 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/legacy9_multi_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,959 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error10 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,961 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_differing_seq_lengths -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,963 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_no_qual.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,965 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_trunc_at_qual.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,967 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sample-metadata-empty-rows.tsv -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,969 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_blank_lines -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,971 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,973 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_no_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,975 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,978 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,980 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_qual_tab.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,982 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error16 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,985 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/pdb_hits.txt -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,987 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qseq_invalid_read -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,989 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embed1.txt.npy -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,995 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,997 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:11:59,999 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_writer_sanger_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,001 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/legacy9_mixed_nans -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,003 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_differing_gc_data_length -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,006 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,008 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/genbank_missing_locus_name -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,010 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_two_chunks -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,012 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,014 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_nonstring_labels -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,016 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/gff3_bad_wrong_columns -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,018 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_2_seqs_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,019 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,021 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_differing_gr_data_length -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,023 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_multi_seq_spaces -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,025 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sample-metadata-complete-types-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,027 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,029 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_two_of_each_metadata -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,031 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,033 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/wrapping_as_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,035 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error13 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,037 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,039 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_malformed_gc_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,041 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,043 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_qual_scores_string -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,045 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_missing_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,047 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error8 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,049 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_blank_after_plus -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,052 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_trunc_in_title.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,054 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_qual_unit_sep.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,056 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,058 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,060 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_missing_footer -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,062 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,065 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error21 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,067 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error6 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,069 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_duplicate_gc -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,071 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,073 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_blank_lines_between_records -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,075 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_10_seqs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,077 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,079 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_description_newline_replacement_none -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,081 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_invalid_type_in_column -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,083 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/longreads_as_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,085 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,088 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,090 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_malformed_gr_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,092 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_different_padding -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,094 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,096 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/empty -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,098 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error22 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,100 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_5_blanks_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,102 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_blank_sequence -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,104 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_single_seq_illumina1.8 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,106 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_tabs.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,107 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,109 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,111 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/gff3_single_record -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,113 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_custom_single_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,115 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2025-10-16T09:12:00,117 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_newick.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:12:00,120 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_sequence_feature_vocabulary.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:12:00,122 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_fastq.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:12:00,125 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_phylip.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:12:00,128 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_ordination.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:12:00,130 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_taxdump.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:12:00,133 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_emptyfile.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:12:00,135 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_fasta.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:12:00,138 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_qseq.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:12:00,141 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_lsmat.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:12:00,143 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:12:00,145 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_blast7.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:12:00,148 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_genbank.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:12:00,151 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_blast6.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:12:00,153 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_binary_dm.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:12:00,156 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_embed.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2025-10-16T09:12:00,158 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/_sequence_feature_vocabulary.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:12:00,161 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/binary_dm.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:12:00,163 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/qseq.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:12:00,166 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:12:00,168 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/taxdump.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:12:00,171 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/emptyfile.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:12:00,173 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/ordination.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:12:00,175 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/lsmat.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:12:00,178 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/fastq.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:12:00,181 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/sample_metadata.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2025-10-16T09:12:00,183 copying build/lib.linux-armv7l-cpython-311/skbio/io/_warning.py -> build/bdist.linux-armv7l/wheel/./skbio/io 2025-10-16T09:12:00,186 copying build/lib.linux-armv7l-cpython-311/skbio/io/registry.py -> build/bdist.linux-armv7l/wheel/./skbio/io 2025-10-16T09:12:00,189 copying build/lib.linux-armv7l-cpython-311/skbio/io/descriptors.py -> build/bdist.linux-armv7l/wheel/./skbio/io 2025-10-16T09:12:00,192 creating build/bdist.linux-armv7l/wheel/skbio/io/tests 2025-10-16T09:12:00,193 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/test_util.py -> build/bdist.linux-armv7l/wheel/./skbio/io/tests 2025-10-16T09:12:00,197 creating build/bdist.linux-armv7l/wheel/skbio/io/tests/data 2025-10-16T09:12:00,198 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/big5_file -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data 2025-10-16T09:12:00,200 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/example_file -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data 2025-10-16T09:12:00,202 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/real_file_2 -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data 2025-10-16T09:12:00,204 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/real_file -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data 2025-10-16T09:12:00,206 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/example_file.bz2 -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data 2025-10-16T09:12:00,208 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/big5_file.bz2 -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data 2025-10-16T09:12:00,210 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/example_file.gz -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data 2025-10-16T09:12:00,212 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/big5_file.gz -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data 2025-10-16T09:12:00,214 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/test_registry.py -> build/bdist.linux-armv7l/wheel/./skbio/io/tests 2025-10-16T09:12:00,217 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/test_iosources.py -> build/bdist.linux-armv7l/wheel/./skbio/io/tests 2025-10-16T09:12:00,219 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/io/tests 2025-10-16T09:12:00,221 copying build/lib.linux-armv7l-cpython-311/skbio/io/_iosources.py -> build/bdist.linux-armv7l/wheel/./skbio/io 2025-10-16T09:12:00,224 copying build/lib.linux-armv7l-cpython-311/skbio/io/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/io 2025-10-16T09:12:00,226 copying build/lib.linux-armv7l-cpython-311/skbio/io/util.py -> build/bdist.linux-armv7l/wheel/./skbio/io 2025-10-16T09:12:00,229 copying build/lib.linux-armv7l-cpython-311/skbio/io/_exception.py -> build/bdist.linux-armv7l/wheel/./skbio/io 2025-10-16T09:12:00,232 creating build/bdist.linux-armv7l/wheel/skbio/table 2025-10-16T09:12:00,233 copying build/lib.linux-armv7l-cpython-311/skbio/table/_augment.py -> build/bdist.linux-armv7l/wheel/./skbio/table 2025-10-16T09:12:00,236 copying build/lib.linux-armv7l-cpython-311/skbio/table/_base.py -> build/bdist.linux-armv7l/wheel/./skbio/table 2025-10-16T09:12:00,239 creating build/bdist.linux-armv7l/wheel/skbio/table/tests 2025-10-16T09:12:00,240 copying build/lib.linux-armv7l-cpython-311/skbio/table/tests/test_base.py -> build/bdist.linux-armv7l/wheel/./skbio/table/tests 2025-10-16T09:12:00,243 copying build/lib.linux-armv7l-cpython-311/skbio/table/tests/test_tabular.py -> build/bdist.linux-armv7l/wheel/./skbio/table/tests 2025-10-16T09:12:00,246 copying build/lib.linux-armv7l-cpython-311/skbio/table/tests/test_augment.py -> build/bdist.linux-armv7l/wheel/./skbio/table/tests 2025-10-16T09:12:00,249 copying build/lib.linux-armv7l-cpython-311/skbio/table/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/table/tests 2025-10-16T09:12:00,251 copying build/lib.linux-armv7l-cpython-311/skbio/table/_tabular.py -> build/bdist.linux-armv7l/wheel/./skbio/table 2025-10-16T09:12:00,254 copying build/lib.linux-armv7l-cpython-311/skbio/table/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/table 2025-10-16T09:12:00,256 copying build/lib.linux-armv7l-cpython-311/skbio/test.py -> build/bdist.linux-armv7l/wheel/./skbio 2025-10-16T09:12:00,259 creating build/bdist.linux-armv7l/wheel/skbio/stats 2025-10-16T09:12:00,260 creating build/bdist.linux-armv7l/wheel/skbio/stats/evolve 2025-10-16T09:12:00,262 copying build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/_hommola.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/evolve 2025-10-16T09:12:00,265 creating build/bdist.linux-armv7l/wheel/skbio/stats/evolve/tests 2025-10-16T09:12:00,266 copying build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/tests/test_hommola.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/evolve/tests 2025-10-16T09:12:00,269 copying build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/evolve/tests 2025-10-16T09:12:00,271 copying build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/evolve 2025-10-16T09:12:00,273 copying build/lib.linux-armv7l-cpython-311/skbio/stats/gradient.py -> build/bdist.linux-armv7l/wheel/./skbio/stats 2025-10-16T09:12:00,276 copying build/lib.linux-armv7l-cpython-311/skbio/stats/_subsample.py -> build/bdist.linux-armv7l/wheel/./skbio/stats 2025-10-16T09:12:00,279 creating build/bdist.linux-armv7l/wheel/skbio/stats/tests 2025-10-16T09:12:00,281 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/test_composition.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests 2025-10-16T09:12:00,285 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/test_gradient.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests 2025-10-16T09:12:00,289 creating build/bdist.linux-armv7l/wheel/skbio/stats/tests/data 2025-10-16T09:12:00,291 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/cr_data_raw -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2025-10-16T09:12:00,293 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/cr_data_out -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2025-10-16T09:12:00,295 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/vr_real_raw -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2025-10-16T09:12:00,297 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/cr_no_data_out -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2025-10-16T09:12:00,299 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/vr_real_out -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2025-10-16T09:12:00,301 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/gr_wo_msg_out -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2025-10-16T09:12:00,303 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/gr_w_msg_out -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2025-10-16T09:12:00,305 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/vr_raw -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2025-10-16T09:12:00,307 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/gr_wo_msg_raw -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2025-10-16T09:12:00,309 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/cr_no_data_raw -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2025-10-16T09:12:00,311 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/gr_w_msg_raw -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2025-10-16T09:12:00,313 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/vr_out -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2025-10-16T09:12:00,315 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/test_misc.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests 2025-10-16T09:12:00,317 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/test_power.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests 2025-10-16T09:12:00,320 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/test_ndarray.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests 2025-10-16T09:12:00,324 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests 2025-10-16T09:12:00,325 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/test_subsample.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests 2025-10-16T09:12:00,328 copying build/lib.linux-armv7l-cpython-311/skbio/stats/power.py -> build/bdist.linux-armv7l/wheel/./skbio/stats 2025-10-16T09:12:00,331 copying build/lib.linux-armv7l-cpython-311/skbio/stats/_misc.py -> build/bdist.linux-armv7l/wheel/./skbio/stats 2025-10-16T09:12:00,333 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition.py -> build/bdist.linux-armv7l/wheel/./skbio/stats 2025-10-16T09:12:00,337 creating build/bdist.linux-armv7l/wheel/skbio/stats/distance 2025-10-16T09:12:00,338 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_permdisp.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2025-10-16T09:12:00,341 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_cutils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2025-10-16T09:12:00,368 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2025-10-16T09:12:00,370 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_permanova.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2025-10-16T09:12:00,373 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_base.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2025-10-16T09:12:00,385 creating build/bdist.linux-armv7l/wheel/skbio/stats/distance/tests 2025-10-16T09:12:00,386 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_base.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests 2025-10-16T09:12:00,389 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_util.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests 2025-10-16T09:12:00,391 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_bioenv.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests 2025-10-16T09:12:00,394 creating build/bdist.linux-armv7l/wheel/skbio/stats/distance/tests/data 2025-10-16T09:12:00,395 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/dm4.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,397 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,399 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/dm.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,401 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,402 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/moving_pictures_mf.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,404 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,406 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/frameSeries_grouping.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,408 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,410 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/dm_reordered.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,412 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/dm2.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,414 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,415 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,417 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,420 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/frameSeries_dm.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,422 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,424 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/exp_results_single_column.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,426 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,428 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/dm3.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,430 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/df.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,431 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/df_extra_column.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,433 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,435 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,437 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/exp_results.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,439 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/moving_pictures_dm.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,441 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,444 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2025-10-16T09:12:00,445 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_anosim.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests 2025-10-16T09:12:00,447 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_mantel.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests 2025-10-16T09:12:00,450 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_permanova.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests 2025-10-16T09:12:00,452 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests 2025-10-16T09:12:00,454 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_permdisp.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests 2025-10-16T09:12:00,456 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_cutils.pyx -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2025-10-16T09:12:00,459 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_bioenv.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2025-10-16T09:12:00,461 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_mantel.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2025-10-16T09:12:00,464 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2025-10-16T09:12:00,466 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_cutils.c -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2025-10-16T09:12:00,510 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_anosim.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2025-10-16T09:12:00,512 copying build/lib.linux-armv7l-cpython-311/skbio/stats/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats 2025-10-16T09:12:00,515 creating build/bdist.linux-armv7l/wheel/skbio/stats/ordination 2025-10-16T09:12:00,516 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_ordination_results.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2025-10-16T09:12:00,518 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_canonical_correspondence_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2025-10-16T09:12:00,521 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_redundancy_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2025-10-16T09:12:00,523 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_principal_coordinate_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2025-10-16T09:12:00,525 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_cutils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2025-10-16T09:12:00,546 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2025-10-16T09:12:00,549 creating build/bdist.linux-armv7l/wheel/skbio/stats/ordination/tests 2025-10-16T09:12:00,551 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_util.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests 2025-10-16T09:12:00,553 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_ordination_results.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests 2025-10-16T09:12:00,556 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_redundancy_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests 2025-10-16T09:12:00,559 creating build/bdist.linux-armv7l/wheel/skbio/stats/ordination/tests/data 2025-10-16T09:12:00,560 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,563 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,565 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,566 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,568 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_biplot_descriptors -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,571 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_sample_data_12dim -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,573 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/varechem.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,575 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,577 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,579 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,581 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_X -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,583 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,585 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,587 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,589 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,591 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,593 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_Y -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,595 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,597 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,599 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,601 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,603 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/varespec.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,605 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_X -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,607 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,609 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_Y -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,612 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,614 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,616 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,618 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,620 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,622 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,624 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,627 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,629 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,631 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,633 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_sample_data -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,635 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,638 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_skbio -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,640 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/L&L_CA_data -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,642 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2025-10-16T09:12:00,644 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_principal_coordinate_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests 2025-10-16T09:12:00,647 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests 2025-10-16T09:12:00,649 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_correspondence_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests 2025-10-16T09:12:00,652 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests 2025-10-16T09:12:00,654 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_cutils.pyx -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2025-10-16T09:12:00,657 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_correspondence_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2025-10-16T09:12:00,659 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2025-10-16T09:12:00,662 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_cutils.c -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2025-10-16T09:12:00,709 copying build/lib.linux-armv7l-cpython-311/skbio/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio 2025-10-16T09:12:00,712 creating build/bdist.linux-armv7l/wheel/skbio/diversity 2025-10-16T09:12:00,713 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/_phylogenetic.c -> build/bdist.linux-armv7l/wheel/./skbio/diversity 2025-10-16T09:12:00,738 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/_driver.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity 2025-10-16T09:12:00,741 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/_phylogenetic.pyx -> build/bdist.linux-armv7l/wheel/./skbio/diversity 2025-10-16T09:12:00,743 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/_block.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity 2025-10-16T09:12:00,746 creating build/bdist.linux-armv7l/wheel/skbio/diversity/alpha 2025-10-16T09:12:00,747 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/_ace.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha 2025-10-16T09:12:00,749 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/_base.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha 2025-10-16T09:12:00,752 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/_lladser.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha 2025-10-16T09:12:00,755 creating build/bdist.linux-armv7l/wheel/skbio/diversity/alpha/tests 2025-10-16T09:12:00,756 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/test_base.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests 2025-10-16T09:12:00,758 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/test_lladser.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests 2025-10-16T09:12:00,761 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/test_pd.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests 2025-10-16T09:12:00,763 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/test_gini.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests 2025-10-16T09:12:00,765 creating build/bdist.linux-armv7l/wheel/skbio/diversity/alpha/tests/data 2025-10-16T09:12:00,767 creating build/bdist.linux-armv7l/wheel/skbio/diversity/alpha/tests/data/qiime-191-tt 2025-10-16T09:12:00,768 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt/README.md -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests/data/qiime-191-tt 2025-10-16T09:12:00,770 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests/data/qiime-191-tt 2025-10-16T09:12:00,771 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests/data/qiime-191-tt 2025-10-16T09:12:00,773 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests/data/qiime-191-tt 2025-10-16T09:12:00,774 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/test_ace.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests 2025-10-16T09:12:00,776 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests 2025-10-16T09:12:00,778 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/test_chao1.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests 2025-10-16T09:12:00,780 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/_gini.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha 2025-10-16T09:12:00,782 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/_pd.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha 2025-10-16T09:12:00,784 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/_chao1.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha 2025-10-16T09:12:00,786 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha 2025-10-16T09:12:00,789 creating build/bdist.linux-armv7l/wheel/skbio/diversity/tests 2025-10-16T09:12:00,790 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/tests/test_block.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/tests 2025-10-16T09:12:00,793 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/tests/test_util.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/tests 2025-10-16T09:12:00,795 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/tests 2025-10-16T09:12:00,796 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/tests/test_driver.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/tests 2025-10-16T09:12:00,800 creating build/bdist.linux-armv7l/wheel/skbio/diversity/beta 2025-10-16T09:12:00,801 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/_unifrac.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta 2025-10-16T09:12:00,804 creating build/bdist.linux-armv7l/wheel/skbio/diversity/beta/tests 2025-10-16T09:12:00,806 creating build/bdist.linux-armv7l/wheel/skbio/diversity/beta/tests/data 2025-10-16T09:12:00,808 creating build/bdist.linux-armv7l/wheel/skbio/diversity/beta/tests/data/qiime-191-tt 2025-10-16T09:12:00,809 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests/data/qiime-191-tt 2025-10-16T09:12:00,811 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt/README.md -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests/data/qiime-191-tt 2025-10-16T09:12:00,813 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests/data/qiime-191-tt 2025-10-16T09:12:00,815 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests/data/qiime-191-tt 2025-10-16T09:12:00,816 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests/data/qiime-191-tt 2025-10-16T09:12:00,818 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests/data/qiime-191-tt 2025-10-16T09:12:00,820 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/test_unifrac.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests 2025-10-16T09:12:00,822 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests 2025-10-16T09:12:00,824 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta 2025-10-16T09:12:00,826 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/_util.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity 2025-10-16T09:12:00,828 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/_phylogenetic.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/diversity 2025-10-16T09:12:00,839 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity 2025-10-16T09:12:00,842 creating build/bdist.linux-armv7l/wheel/skbio/tree 2025-10-16T09:12:00,843 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_compare.py -> build/bdist.linux-armv7l/wheel/./skbio/tree 2025-10-16T09:12:00,846 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_majority_rule.py -> build/bdist.linux-armv7l/wheel/./skbio/tree 2025-10-16T09:12:00,848 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_me.py -> build/bdist.linux-armv7l/wheel/./skbio/tree 2025-10-16T09:12:00,852 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/tree 2025-10-16T09:12:00,854 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_c_me.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/tree 2025-10-16T09:12:00,886 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_upgma.py -> build/bdist.linux-armv7l/wheel/./skbio/tree 2025-10-16T09:12:00,888 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_c_nj.c -> build/bdist.linux-armv7l/wheel/./skbio/tree 2025-10-16T09:12:00,917 creating build/bdist.linux-armv7l/wheel/skbio/tree/tests 2025-10-16T09:12:00,918 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_me.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests 2025-10-16T09:12:00,921 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_compare.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests 2025-10-16T09:12:00,923 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_upgma.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests 2025-10-16T09:12:00,925 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_tree.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests 2025-10-16T09:12:00,929 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests 2025-10-16T09:12:00,931 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_nj.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests 2025-10-16T09:12:00,933 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_majority_rule.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests 2025-10-16T09:12:00,935 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests 2025-10-16T09:12:00,937 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_c_me.c -> build/bdist.linux-armv7l/wheel/./skbio/tree 2025-10-16T09:12:01,003 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_c_me.pyx -> build/bdist.linux-armv7l/wheel/./skbio/tree 2025-10-16T09:12:01,006 copying build/lib.linux-armv7l-cpython-311/skbio/tree/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/tree 2025-10-16T09:12:01,008 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_c_nj.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/tree 2025-10-16T09:12:01,042 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_c_nj.pyx -> build/bdist.linux-armv7l/wheel/./skbio/tree 2025-10-16T09:12:01,044 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_nj.py -> build/bdist.linux-armv7l/wheel/./skbio/tree 2025-10-16T09:12:01,047 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_tree.py -> build/bdist.linux-armv7l/wheel/./skbio/tree 2025-10-16T09:12:01,053 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_exception.py -> build/bdist.linux-armv7l/wheel/./skbio/tree 2025-10-16T09:12:01,055 running install_egg_info 2025-10-16T09:12:01,062 Copying scikit_bio.egg-info to build/bdist.linux-armv7l/wheel/./scikit_bio-0.7.0-py3.11.egg-info 2025-10-16T09:12:01,074 running install_scripts 2025-10-16T09:12:01,121 creating build/bdist.linux-armv7l/wheel/scikit_bio-0.7.0.dist-info/WHEEL 2025-10-16T09:12:01,124 creating '/tmp/pip-wheel-472df4j0/.tmp-1e1w6f8t/scikit_bio-0.7.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-10-16T09:12:01,128 adding 'scikit_bio-0.7.0.dist-info/licenses/LICENSE.txt' 2025-10-16T09:12:01,130 adding 'skbio/__init__.py' 2025-10-16T09:12:01,132 adding 'skbio/_base.py' 2025-10-16T09:12:01,134 adding 'skbio/_config.py' 2025-10-16T09:12:01,136 adding 'skbio/test.py' 2025-10-16T09:12:01,139 adding 'skbio/workflow.py' 2025-10-16T09:12:01,143 adding 'skbio/alignment/__init__.py' 2025-10-16T09:12:01,259 adding 'skbio/alignment/_cutils.c' 2025-10-16T09:12:01,569 adding 'skbio/alignment/_cutils.cpython-311-arm-linux-gnueabihf.so' 2025-10-16T09:12:01,581 adding 'skbio/alignment/_cutils.pyx' 2025-10-16T09:12:01,583 adding 'skbio/alignment/_indexing.py' 2025-10-16T09:12:01,590 adding 'skbio/alignment/_pair.py' 2025-10-16T09:12:01,594 adding 'skbio/alignment/_pairwise.py' 2025-10-16T09:12:01,599 adding 'skbio/alignment/_path.py' 2025-10-16T09:12:01,601 adding 'skbio/alignment/_repr.py' 2025-10-16T09:12:01,603 adding 'skbio/alignment/_score.py' 2025-10-16T09:12:01,613 adding 'skbio/alignment/_tabular_msa.py' 2025-10-16T09:12:01,616 adding 'skbio/alignment/_utils.py' 2025-10-16T09:12:01,620 adding 'skbio/alignment/tests/__init__.py' 2025-10-16T09:12:01,626 adding 'skbio/alignment/tests/test_pair.py' 2025-10-16T09:12:01,630 adding 'skbio/alignment/tests/test_pairwise.py' 2025-10-16T09:12:01,634 adding 'skbio/alignment/tests/test_path.py' 2025-10-16T09:12:01,637 adding 'skbio/alignment/tests/test_score.py' 2025-10-16T09:12:01,649 adding 'skbio/alignment/tests/test_tabular_msa.py' 2025-10-16T09:12:01,655 adding 'skbio/alignment/tests/test_utils.py' 2025-10-16T09:12:01,664 adding 'skbio/alignment/tests/data/16s.frn' 2025-10-16T09:12:01,670 adding 'skbio/alignment/tests/data/il6.nucl.aln' 2025-10-16T09:12:01,675 adding 'skbio/alignment/tests/data/il6.prot.aln' 2025-10-16T09:12:01,679 adding 'skbio/alignment/tests/data/insulin.faa' 2025-10-16T09:12:01,689 adding 'skbio/binaries/__init__.py' 2025-10-16T09:12:01,695 adding 'skbio/binaries/_distance.py' 2025-10-16T09:12:01,700 adding 'skbio/binaries/_ordination.py' 2025-10-16T09:12:01,704 adding 'skbio/binaries/_util.py' 2025-10-16T09:12:01,711 adding 'skbio/binaries/tests/test_util.py' 2025-10-16T09:12:01,719 adding 'skbio/diversity/__init__.py' 2025-10-16T09:12:01,723 adding 'skbio/diversity/_block.py' 2025-10-16T09:12:01,728 adding 'skbio/diversity/_driver.py' 2025-10-16T09:12:01,781 adding 'skbio/diversity/_phylogenetic.c' 2025-10-16T09:12:01,862 adding 'skbio/diversity/_phylogenetic.cpython-311-arm-linux-gnueabihf.so' 2025-10-16T09:12:01,866 adding 'skbio/diversity/_phylogenetic.pyx' 2025-10-16T09:12:01,868 adding 'skbio/diversity/_util.py' 2025-10-16T09:12:01,870 adding 'skbio/diversity/alpha/__init__.py' 2025-10-16T09:12:01,871 adding 'skbio/diversity/alpha/_ace.py' 2025-10-16T09:12:01,875 adding 'skbio/diversity/alpha/_base.py' 2025-10-16T09:12:01,877 adding 'skbio/diversity/alpha/_chao1.py' 2025-10-16T09:12:01,878 adding 'skbio/diversity/alpha/_gini.py' 2025-10-16T09:12:01,881 adding 'skbio/diversity/alpha/_lladser.py' 2025-10-16T09:12:01,883 adding 'skbio/diversity/alpha/_pd.py' 2025-10-16T09:12:01,885 adding 'skbio/diversity/alpha/tests/__init__.py' 2025-10-16T09:12:01,886 adding 'skbio/diversity/alpha/tests/test_ace.py' 2025-10-16T09:12:01,888 adding 'skbio/diversity/alpha/tests/test_base.py' 2025-10-16T09:12:01,890 adding 'skbio/diversity/alpha/tests/test_chao1.py' 2025-10-16T09:12:01,891 adding 'skbio/diversity/alpha/tests/test_gini.py' 2025-10-16T09:12:01,893 adding 'skbio/diversity/alpha/tests/test_lladser.py' 2025-10-16T09:12:01,895 adding 'skbio/diversity/alpha/tests/test_pd.py' 2025-10-16T09:12:01,897 adding 'skbio/diversity/alpha/tests/data/qiime-191-tt/README.md' 2025-10-16T09:12:01,898 adding 'skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt' 2025-10-16T09:12:01,899 adding 'skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv' 2025-10-16T09:12:01,900 adding 'skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk' 2025-10-16T09:12:01,902 adding 'skbio/diversity/beta/__init__.py' 2025-10-16T09:12:01,904 adding 'skbio/diversity/beta/_unifrac.py' 2025-10-16T09:12:01,906 adding 'skbio/diversity/beta/tests/__init__.py' 2025-10-16T09:12:01,908 adding 'skbio/diversity/beta/tests/test_unifrac.py' 2025-10-16T09:12:01,911 adding 'skbio/diversity/beta/tests/data/qiime-191-tt/README.md' 2025-10-16T09:12:01,912 adding 'skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv' 2025-10-16T09:12:01,913 adding 'skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk' 2025-10-16T09:12:01,914 adding 'skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt' 2025-10-16T09:12:01,915 adding 'skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt' 2025-10-16T09:12:01,916 adding 'skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt' 2025-10-16T09:12:01,918 adding 'skbio/diversity/tests/__init__.py' 2025-10-16T09:12:01,920 adding 'skbio/diversity/tests/test_block.py' 2025-10-16T09:12:01,923 adding 'skbio/diversity/tests/test_driver.py' 2025-10-16T09:12:01,924 adding 'skbio/diversity/tests/test_util.py' 2025-10-16T09:12:01,926 adding 'skbio/embedding/__init__.py' 2025-10-16T09:12:01,928 adding 'skbio/embedding/_embedding.py' 2025-10-16T09:12:01,929 adding 'skbio/embedding/_protein.py' 2025-10-16T09:12:01,931 adding 'skbio/embedding/tests/__init__.py' 2025-10-16T09:12:01,933 adding 'skbio/embedding/tests/test_embedding.py' 2025-10-16T09:12:01,934 adding 'skbio/embedding/tests/test_protein.py' 2025-10-16T09:12:01,972 adding 'skbio/embedding/tests/data/embed1.txt.npy' 2025-10-16T09:12:01,976 adding 'skbio/io/__init__.py' 2025-10-16T09:12:01,977 adding 'skbio/io/_exception.py' 2025-10-16T09:12:01,978 adding 'skbio/io/_fileobject.py' 2025-10-16T09:12:01,980 adding 'skbio/io/_iosources.py' 2025-10-16T09:12:01,981 adding 'skbio/io/_warning.py' 2025-10-16T09:12:01,983 adding 'skbio/io/descriptors.py' 2025-10-16T09:12:01,987 adding 'skbio/io/registry.py' 2025-10-16T09:12:01,990 adding 'skbio/io/util.py' 2025-10-16T09:12:01,992 adding 'skbio/io/format/__init__.py' 2025-10-16T09:12:01,993 adding 'skbio/io/format/_base.py' 2025-10-16T09:12:01,995 adding 'skbio/io/format/_blast.py' 2025-10-16T09:12:01,996 adding 'skbio/io/format/_sequence_feature_vocabulary.py' 2025-10-16T09:12:01,998 adding 'skbio/io/format/binary_dm.py' 2025-10-16T09:12:01,999 adding 'skbio/io/format/biom.py' 2025-10-16T09:12:02,001 adding 'skbio/io/format/blast6.py' 2025-10-16T09:12:02,003 adding 'skbio/io/format/blast7.py' 2025-10-16T09:12:02,005 adding 'skbio/io/format/clustal.py' 2025-10-16T09:12:02,007 adding 'skbio/io/format/embed.py' 2025-10-16T09:12:02,013 adding 'skbio/io/format/embl.py' 2025-10-16T09:12:02,015 adding 'skbio/io/format/emptyfile.py' 2025-10-16T09:12:02,019 adding 'skbio/io/format/fasta.py' 2025-10-16T09:12:02,022 adding 'skbio/io/format/fastq.py' 2025-10-16T09:12:02,025 adding 'skbio/io/format/genbank.py' 2025-10-16T09:12:02,028 adding 'skbio/io/format/gff3.py' 2025-10-16T09:12:02,029 adding 'skbio/io/format/lsmat.py' 2025-10-16T09:12:02,032 adding 'skbio/io/format/newick.py' 2025-10-16T09:12:02,034 adding 'skbio/io/format/ordination.py' 2025-10-16T09:12:02,037 adding 'skbio/io/format/phylip.py' 2025-10-16T09:12:02,038 adding 'skbio/io/format/qseq.py' 2025-10-16T09:12:02,041 adding 'skbio/io/format/sample_metadata.py' 2025-10-16T09:12:02,044 adding 'skbio/io/format/stockholm.py' 2025-10-16T09:12:02,046 adding 'skbio/io/format/taxdump.py' 2025-10-16T09:12:02,048 adding 'skbio/io/format/tests/__init__.py' 2025-10-16T09:12:02,050 adding 'skbio/io/format/tests/test_base.py' 2025-10-16T09:12:02,051 adding 'skbio/io/format/tests/test_binary_dm.py' 2025-10-16T09:12:02,052 adding 'skbio/io/format/tests/test_biom.py' 2025-10-16T09:12:02,054 adding 'skbio/io/format/tests/test_blast6.py' 2025-10-16T09:12:02,055 adding 'skbio/io/format/tests/test_blast7.py' 2025-10-16T09:12:02,057 adding 'skbio/io/format/tests/test_clustal.py' 2025-10-16T09:12:02,059 adding 'skbio/io/format/tests/test_embed.py' 2025-10-16T09:12:02,062 adding 'skbio/io/format/tests/test_embl.py' 2025-10-16T09:12:02,063 adding 'skbio/io/format/tests/test_emptyfile.py' 2025-10-16T09:12:02,067 adding 'skbio/io/format/tests/test_fasta.py' 2025-10-16T09:12:02,070 adding 'skbio/io/format/tests/test_fastq.py' 2025-10-16T09:12:02,072 adding 'skbio/io/format/tests/test_genbank.py' 2025-10-16T09:12:02,074 adding 'skbio/io/format/tests/test_gff3.py' 2025-10-16T09:12:02,076 adding 'skbio/io/format/tests/test_lsmat.py' 2025-10-16T09:12:02,078 adding 'skbio/io/format/tests/test_newick.py' 2025-10-16T09:12:02,080 adding 'skbio/io/format/tests/test_ordination.py' 2025-10-16T09:12:02,081 adding 'skbio/io/format/tests/test_phylip.py' 2025-10-16T09:12:02,083 adding 'skbio/io/format/tests/test_qseq.py' 2025-10-16T09:12:02,084 adding 'skbio/io/format/tests/test_sample_metadata.py' 2025-10-16T09:12:02,086 adding 'skbio/io/format/tests/test_sequence_feature_vocabulary.py' 2025-10-16T09:12:02,088 adding 'skbio/io/format/tests/test_stockholm.py' 2025-10-16T09:12:02,090 adding 'skbio/io/format/tests/test_taxdump.py' 2025-10-16T09:12:02,098 adding 'skbio/io/format/tests/data/blast6_custom_minimal' 2025-10-16T09:12:02,099 adding 'skbio/io/format/tests/data/blast6_custom_mixed_nans' 2025-10-16T09:12:02,100 adding 'skbio/io/format/tests/data/blast6_custom_multi_line' 2025-10-16T09:12:02,102 adding 'skbio/io/format/tests/data/blast6_custom_single_line' 2025-10-16T09:12:02,103 adding 'skbio/io/format/tests/data/blast6_default_multi_line' 2025-10-16T09:12:02,104 adding 'skbio/io/format/tests/data/blast6_default_single_line' 2025-10-16T09:12:02,105 adding 'skbio/io/format/tests/data/blast6_invalid_column_types' 2025-10-16T09:12:02,106 adding 'skbio/io/format/tests/data/blast6_invalid_number_of_columns' 2025-10-16T09:12:02,107 adding 'skbio/io/format/tests/data/blast6_invalid_type_in_column' 2025-10-16T09:12:02,108 adding 'skbio/io/format/tests/data/blast7_custom_minimal' 2025-10-16T09:12:02,110 adding 'skbio/io/format/tests/data/blast7_custom_mixed_nans' 2025-10-16T09:12:02,111 adding 'skbio/io/format/tests/data/blast7_custom_multi_line' 2025-10-16T09:12:02,112 adding 'skbio/io/format/tests/data/blast7_custom_single_line' 2025-10-16T09:12:02,113 adding 'skbio/io/format/tests/data/blast7_default_multi_line' 2025-10-16T09:12:02,114 adding 'skbio/io/format/tests/data/blast7_default_single_line' 2025-10-16T09:12:02,115 adding 'skbio/io/format/tests/data/blast7_invalid_differing_fields' 2025-10-16T09:12:02,116 adding 'skbio/io/format/tests/data/blast7_invalid_for_sniffer' 2025-10-16T09:12:02,117 adding 'skbio/io/format/tests/data/blast7_invalid_for_sniffer_2' 2025-10-16T09:12:02,119 adding 'skbio/io/format/tests/data/blast7_invalid_gibberish' 2025-10-16T09:12:02,120 adding 'skbio/io/format/tests/data/blast7_invalid_no_data' 2025-10-16T09:12:02,121 adding 'skbio/io/format/tests/data/blast7_invalid_too_many_columns' 2025-10-16T09:12:02,122 adding 'skbio/io/format/tests/data/blast7_invalid_unrecognized_field' 2025-10-16T09:12:02,159 adding 'skbio/io/format/tests/data/embed1.txt.npy' 2025-10-16T09:12:02,198 adding 'skbio/io/format/tests/data/embed2.txt.npy' 2025-10-16T09:12:02,201 adding 'skbio/io/format/tests/data/embl_constructed' 2025-10-16T09:12:02,202 adding 'skbio/io/format/tests/data/embl_feature_level_record' 2025-10-16T09:12:02,204 adding 'skbio/io/format/tests/data/embl_feature_level_record_no_FT' 2025-10-16T09:12:02,205 adding 'skbio/io/format/tests/data/embl_multi_records' 2025-10-16T09:12:02,207 adding 'skbio/io/format/tests/data/embl_single_record' 2025-10-16T09:12:02,208 adding 'skbio/io/format/tests/data/embl_single_record_lower' 2025-10-16T09:12:02,209 adding 'skbio/io/format/tests/data/embl_single_record_simple' 2025-10-16T09:12:02,210 adding 'skbio/io/format/tests/data/embl_single_record_upper' 2025-10-16T09:12:02,212 adding 'skbio/io/format/tests/data/embl_uniprot_record' 2025-10-16T09:12:02,213 adding 'skbio/io/format/tests/data/embl_w_beginning_whitespace' 2025-10-16T09:12:02,214 adding 'skbio/io/format/tests/data/empty' 2025-10-16T09:12:02,215 adding 'skbio/io/format/tests/data/error_diff_ids.fastq' 2025-10-16T09:12:02,216 adding 'skbio/io/format/tests/data/error_double_qual.fastq' 2025-10-16T09:12:02,217 adding 'skbio/io/format/tests/data/error_double_seq.fastq' 2025-10-16T09:12:02,219 adding 'skbio/io/format/tests/data/error_long_qual.fastq' 2025-10-16T09:12:02,220 adding 'skbio/io/format/tests/data/error_no_qual.fastq' 2025-10-16T09:12:02,221 adding 'skbio/io/format/tests/data/error_qual_del.fastq' 2025-10-16T09:12:02,222 adding 'skbio/io/format/tests/data/error_qual_escape.fastq' 2025-10-16T09:12:02,223 adding 'skbio/io/format/tests/data/error_qual_null.fastq' 2025-10-16T09:12:02,224 adding 'skbio/io/format/tests/data/error_qual_space.fastq' 2025-10-16T09:12:02,226 adding 'skbio/io/format/tests/data/error_qual_tab.fastq' 2025-10-16T09:12:02,227 adding 'skbio/io/format/tests/data/error_qual_unit_sep.fastq' 2025-10-16T09:12:02,228 adding 'skbio/io/format/tests/data/error_qual_vtab.fastq' 2025-10-16T09:12:02,229 adding 'skbio/io/format/tests/data/error_short_qual.fastq' 2025-10-16T09:12:02,230 adding 'skbio/io/format/tests/data/error_spaces.fastq' 2025-10-16T09:12:02,232 adding 'skbio/io/format/tests/data/error_tabs.fastq' 2025-10-16T09:12:02,233 adding 'skbio/io/format/tests/data/error_trunc_at_plus.fastq' 2025-10-16T09:12:02,234 adding 'skbio/io/format/tests/data/error_trunc_at_qual.fastq' 2025-10-16T09:12:02,235 adding 'skbio/io/format/tests/data/error_trunc_at_seq.fastq' 2025-10-16T09:12:02,236 adding 'skbio/io/format/tests/data/error_trunc_in_plus.fastq' 2025-10-16T09:12:02,238 adding 'skbio/io/format/tests/data/error_trunc_in_qual.fastq' 2025-10-16T09:12:02,239 adding 'skbio/io/format/tests/data/error_trunc_in_seq.fastq' 2025-10-16T09:12:02,240 adding 'skbio/io/format/tests/data/error_trunc_in_title.fastq' 2025-10-16T09:12:02,241 adding 'skbio/io/format/tests/data/fasta_10_seqs' 2025-10-16T09:12:02,242 adding 'skbio/io/format/tests/data/fasta_3_seqs_defaults' 2025-10-16T09:12:02,243 adding 'skbio/io/format/tests/data/fasta_3_seqs_non_defaults' 2025-10-16T09:12:02,244 adding 'skbio/io/format/tests/data/fasta_5_blanks_start_of_file' 2025-10-16T09:12:02,246 adding 'skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file' 2025-10-16T09:12:02,247 adding 'skbio/io/format/tests/data/fasta_6_blanks_start_of_file' 2025-10-16T09:12:02,248 adding 'skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file' 2025-10-16T09:12:02,249 adding 'skbio/io/format/tests/data/fasta_blank_lines_between_records' 2025-10-16T09:12:02,250 adding 'skbio/io/format/tests/data/fasta_blanks_end_of_file' 2025-10-16T09:12:02,251 adding 'skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str' 2025-10-16T09:12:02,252 adding 'skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char' 2025-10-16T09:12:02,253 adding 'skbio/io/format/tests/data/fasta_description_newline_replacement_none' 2025-10-16T09:12:02,254 adding 'skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str' 2025-10-16T09:12:02,256 adding 'skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char' 2025-10-16T09:12:02,257 adding 'skbio/io/format/tests/data/fasta_id_whitespace_replacement_none' 2025-10-16T09:12:02,258 adding 'skbio/io/format/tests/data/fasta_invalid_after_10_seqs' 2025-10-16T09:12:02,259 adding 'skbio/io/format/tests/data/fasta_invalid_blank_line_after_header' 2025-10-16T09:12:02,260 adding 'skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence' 2025-10-16T09:12:02,261 adding 'skbio/io/format/tests/data/fasta_invalid_blank_sequence' 2025-10-16T09:12:02,262 adding 'skbio/io/format/tests/data/fasta_invalid_legacy_format' 2025-10-16T09:12:02,263 adding 'skbio/io/format/tests/data/fasta_invalid_missing_header' 2025-10-16T09:12:02,264 adding 'skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first' 2025-10-16T09:12:02,265 adding 'skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last' 2025-10-16T09:12:02,266 adding 'skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle' 2025-10-16T09:12:02,268 adding 'skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header' 2025-10-16T09:12:02,269 adding 'skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence' 2025-10-16T09:12:02,270 adding 'skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence' 2025-10-16T09:12:02,271 adding 'skbio/io/format/tests/data/fasta_max_width_1' 2025-10-16T09:12:02,272 adding 'skbio/io/format/tests/data/fasta_max_width_5' 2025-10-16T09:12:02,273 adding 'skbio/io/format/tests/data/fasta_mixed_qual_scores' 2025-10-16T09:12:02,274 adding 'skbio/io/format/tests/data/fasta_multi_seq' 2025-10-16T09:12:02,275 adding 'skbio/io/format/tests/data/fasta_multi_seq_roundtrip' 2025-10-16T09:12:02,277 adding 'skbio/io/format/tests/data/fasta_multi_seq_spaces' 2025-10-16T09:12:02,278 adding 'skbio/io/format/tests/data/fasta_prot_seqs_odd_labels' 2025-10-16T09:12:02,279 adding 'skbio/io/format/tests/data/fasta_single_bio_seq_defaults' 2025-10-16T09:12:02,280 adding 'skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults' 2025-10-16T09:12:02,281 adding 'skbio/io/format/tests/data/fasta_single_dna_seq_defaults' 2025-10-16T09:12:02,283 adding 'skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults' 2025-10-16T09:12:02,284 adding 'skbio/io/format/tests/data/fasta_single_prot_seq_defaults' 2025-10-16T09:12:02,285 adding 'skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults' 2025-10-16T09:12:02,286 adding 'skbio/io/format/tests/data/fasta_single_rna_seq_defaults' 2025-10-16T09:12:02,287 adding 'skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults' 2025-10-16T09:12:02,288 adding 'skbio/io/format/tests/data/fasta_single_seq' 2025-10-16T09:12:02,290 adding 'skbio/io/format/tests/data/fasta_tabular_msa_different_type' 2025-10-16T09:12:02,291 adding 'skbio/io/format/tests/data/fasta_ws_lines_between_records' 2025-10-16T09:12:02,292 adding 'skbio/io/format/tests/data/fasta_ws_lines_end_of_file' 2025-10-16T09:12:02,293 adding 'skbio/io/format/tests/data/fastq_5_blanks_start_of_file' 2025-10-16T09:12:02,294 adding 'skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file' 2025-10-16T09:12:02,295 adding 'skbio/io/format/tests/data/fastq_blank_lines' 2025-10-16T09:12:02,296 adding 'skbio/io/format/tests/data/fastq_invalid_blank_after_header' 2025-10-16T09:12:02,297 adding 'skbio/io/format/tests/data/fastq_invalid_blank_after_plus' 2025-10-16T09:12:02,298 adding 'skbio/io/format/tests/data/fastq_invalid_blank_after_seq' 2025-10-16T09:12:02,299 adding 'skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol' 2025-10-16T09:12:02,300 adding 'skbio/io/format/tests/data/fastq_invalid_blank_within_qual' 2025-10-16T09:12:02,302 adding 'skbio/io/format/tests/data/fastq_invalid_blank_within_seq' 2025-10-16T09:12:02,303 adding 'skbio/io/format/tests/data/fastq_invalid_missing_header' 2025-10-16T09:12:02,304 adding 'skbio/io/format/tests/data/fastq_invalid_missing_seq_data' 2025-10-16T09:12:02,305 adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_after_header' 2025-10-16T09:12:02,306 adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus' 2025-10-16T09:12:02,307 adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq' 2025-10-16T09:12:02,308 adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual' 2025-10-16T09:12:02,309 adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq' 2025-10-16T09:12:02,310 adding 'skbio/io/format/tests/data/fastq_multi_blank_between_records' 2025-10-16T09:12:02,311 adding 'skbio/io/format/tests/data/fastq_multi_blank_end_of_file' 2025-10-16T09:12:02,313 adding 'skbio/io/format/tests/data/fastq_multi_blank_start_of_file' 2025-10-16T09:12:02,314 adding 'skbio/io/format/tests/data/fastq_multi_seq_sanger' 2025-10-16T09:12:02,315 adding 'skbio/io/format/tests/data/fastq_multi_whitespace_stripping' 2025-10-16T09:12:02,316 adding 'skbio/io/format/tests/data/fastq_multi_ws_lines_between_records' 2025-10-16T09:12:02,317 adding 'skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file' 2025-10-16T09:12:02,318 adding 'skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file' 2025-10-16T09:12:02,319 adding 'skbio/io/format/tests/data/fastq_single_seq_illumina1.3' 2025-10-16T09:12:02,320 adding 'skbio/io/format/tests/data/fastq_single_seq_illumina1.8' 2025-10-16T09:12:02,322 adding 'skbio/io/format/tests/data/fastq_whitespace_only_lines' 2025-10-16T09:12:02,323 adding 'skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description' 2025-10-16T09:12:02,324 adding 'skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description' 2025-10-16T09:12:02,325 adding 'skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description' 2025-10-16T09:12:02,326 adding 'skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults' 2025-10-16T09:12:02,328 adding 'skbio/io/format/tests/data/fastq_writer_sanger_defaults' 2025-10-16T09:12:02,329 adding 'skbio/io/format/tests/data/fastq_writer_sanger_non_defaults' 2025-10-16T09:12:02,330 adding 'skbio/io/format/tests/data/genbank_5_blanks_start_of_file' 2025-10-16T09:12:02,331 adding 'skbio/io/format/tests/data/genbank_6_blanks_start_of_file' 2025-10-16T09:12:02,332 adding 'skbio/io/format/tests/data/genbank_missing_locus_name' 2025-10-16T09:12:02,333 adding 'skbio/io/format/tests/data/genbank_multi_records' 2025-10-16T09:12:02,335 adding 'skbio/io/format/tests/data/genbank_single_record' 2025-10-16T09:12:02,336 adding 'skbio/io/format/tests/data/genbank_single_record_lower' 2025-10-16T09:12:02,337 adding 'skbio/io/format/tests/data/genbank_single_record_upper' 2025-10-16T09:12:02,338 adding 'skbio/io/format/tests/data/genbank_w_beginning_whitespace' 2025-10-16T09:12:02,340 adding 'skbio/io/format/tests/data/gff3_bad_missing_directive' 2025-10-16T09:12:02,341 adding 'skbio/io/format/tests/data/gff3_bad_wrong_columns' 2025-10-16T09:12:02,342 adding 'skbio/io/format/tests/data/gff3_dna' 2025-10-16T09:12:02,344 adding 'skbio/io/format/tests/data/gff3_multi_record' 2025-10-16T09:12:02,345 adding 'skbio/io/format/tests/data/gff3_single_record' 2025-10-16T09:12:02,346 adding 'skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq' 2025-10-16T09:12:02,347 adding 'skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq' 2025-10-16T09:12:02,348 adding 'skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq' 2025-10-16T09:12:02,349 adding 'skbio/io/format/tests/data/legacy9_and_blast7_default' 2025-10-16T09:12:02,350 adding 'skbio/io/format/tests/data/legacy9_invalid_differing_fields' 2025-10-16T09:12:02,351 adding 'skbio/io/format/tests/data/legacy9_invalid_too_many_columns' 2025-10-16T09:12:02,352 adding 'skbio/io/format/tests/data/legacy9_mixed_nans' 2025-10-16T09:12:02,353 adding 'skbio/io/format/tests/data/legacy9_multi_line' 2025-10-16T09:12:02,354 adding 'skbio/io/format/tests/data/legacy9_single_line' 2025-10-16T09:12:02,357 adding 'skbio/io/format/tests/data/longreads_as_illumina.fastq' 2025-10-16T09:12:02,359 adding 'skbio/io/format/tests/data/longreads_as_sanger.fastq' 2025-10-16T09:12:02,361 adding 'skbio/io/format/tests/data/longreads_original_sanger.fastq' 2025-10-16T09:12:02,362 adding 'skbio/io/format/tests/data/misc_dna_as_illumina.fastq' 2025-10-16T09:12:02,363 adding 'skbio/io/format/tests/data/misc_dna_as_sanger.fastq' 2025-10-16T09:12:02,364 adding 'skbio/io/format/tests/data/misc_dna_original_sanger.fastq' 2025-10-16T09:12:02,366 adding 'skbio/io/format/tests/data/misc_rna_as_illumina.fastq' 2025-10-16T09:12:02,367 adding 'skbio/io/format/tests/data/misc_rna_as_sanger.fastq' 2025-10-16T09:12:02,368 adding 'skbio/io/format/tests/data/misc_rna_original_sanger.fastq' 2025-10-16T09:12:02,369 adding 'skbio/io/format/tests/data/ordination_L&L_CA_data_scores' 2025-10-16T09:12:02,371 adding 'skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores' 2025-10-16T09:12:02,372 adding 'skbio/io/format/tests/data/ordination_error1' 2025-10-16T09:12:02,373 adding 'skbio/io/format/tests/data/ordination_error10' 2025-10-16T09:12:02,375 adding 'skbio/io/format/tests/data/ordination_error11' 2025-10-16T09:12:02,376 adding 'skbio/io/format/tests/data/ordination_error12' 2025-10-16T09:12:02,377 adding 'skbio/io/format/tests/data/ordination_error13' 2025-10-16T09:12:02,379 adding 'skbio/io/format/tests/data/ordination_error14' 2025-10-16T09:12:02,380 adding 'skbio/io/format/tests/data/ordination_error15' 2025-10-16T09:12:02,381 adding 'skbio/io/format/tests/data/ordination_error16' 2025-10-16T09:12:02,383 adding 'skbio/io/format/tests/data/ordination_error17' 2025-10-16T09:12:02,384 adding 'skbio/io/format/tests/data/ordination_error18' 2025-10-16T09:12:02,385 adding 'skbio/io/format/tests/data/ordination_error19' 2025-10-16T09:12:02,387 adding 'skbio/io/format/tests/data/ordination_error2' 2025-10-16T09:12:02,388 adding 'skbio/io/format/tests/data/ordination_error20' 2025-10-16T09:12:02,389 adding 'skbio/io/format/tests/data/ordination_error21' 2025-10-16T09:12:02,390 adding 'skbio/io/format/tests/data/ordination_error22' 2025-10-16T09:12:02,391 adding 'skbio/io/format/tests/data/ordination_error23' 2025-10-16T09:12:02,392 adding 'skbio/io/format/tests/data/ordination_error24' 2025-10-16T09:12:02,394 adding 'skbio/io/format/tests/data/ordination_error3' 2025-10-16T09:12:02,395 adding 'skbio/io/format/tests/data/ordination_error4' 2025-10-16T09:12:02,397 adding 'skbio/io/format/tests/data/ordination_error5' 2025-10-16T09:12:02,398 adding 'skbio/io/format/tests/data/ordination_error6' 2025-10-16T09:12:02,400 adding 'skbio/io/format/tests/data/ordination_error7' 2025-10-16T09:12:02,401 adding 'skbio/io/format/tests/data/ordination_error8' 2025-10-16T09:12:02,402 adding 'skbio/io/format/tests/data/ordination_error9' 2025-10-16T09:12:02,403 adding 'skbio/io/format/tests/data/ordination_example2_scores' 2025-10-16T09:12:02,405 adding 'skbio/io/format/tests/data/ordination_example3_scores' 2025-10-16T09:12:02,406 adding 'skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site' 2025-10-16T09:12:02,408 adding 'skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints' 2025-10-16T09:12:02,409 adding 'skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species' 2025-10-16T09:12:02,410 adding 'skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site' 2025-10-16T09:12:02,412 adding 'skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site' 2025-10-16T09:12:02,413 adding 'skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints' 2025-10-16T09:12:02,414 adding 'skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species' 2025-10-16T09:12:02,415 adding 'skbio/io/format/tests/data/pdb_hits.txt' 2025-10-16T09:12:02,416 adding 'skbio/io/format/tests/data/phylip_dna_3_seqs' 2025-10-16T09:12:02,417 adding 'skbio/io/format/tests/data/phylip_invalid_empty_line_after_header' 2025-10-16T09:12:02,418 adding 'skbio/io/format/tests/data/phylip_invalid_empty_line_before_header' 2025-10-16T09:12:02,420 adding 'skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs' 2025-10-16T09:12:02,421 adding 'skbio/io/format/tests/data/phylip_invalid_header_too_long' 2025-10-16T09:12:02,422 adding 'skbio/io/format/tests/data/phylip_invalid_header_too_short' 2025-10-16T09:12:02,423 adding 'skbio/io/format/tests/data/phylip_invalid_no_header' 2025-10-16T09:12:02,424 adding 'skbio/io/format/tests/data/phylip_invalid_seq_too_long' 2025-10-16T09:12:02,425 adding 'skbio/io/format/tests/data/phylip_invalid_seq_too_short' 2025-10-16T09:12:02,426 adding 'skbio/io/format/tests/data/phylip_invalid_too_few_seqs' 2025-10-16T09:12:02,427 adding 'skbio/io/format/tests/data/phylip_invalid_too_many_seqs' 2025-10-16T09:12:02,428 adding 'skbio/io/format/tests/data/phylip_invalid_zero_seq_len' 2025-10-16T09:12:02,429 adding 'skbio/io/format/tests/data/phylip_invalid_zero_seqs' 2025-10-16T09:12:02,431 adding 'skbio/io/format/tests/data/phylip_single_seq_long' 2025-10-16T09:12:02,432 adding 'skbio/io/format/tests/data/phylip_single_seq_short' 2025-10-16T09:12:02,433 adding 'skbio/io/format/tests/data/phylip_two_chunks' 2025-10-16T09:12:02,434 adding 'skbio/io/format/tests/data/phylip_variable_length_ids' 2025-10-16T09:12:02,435 adding 'skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs' 2025-10-16T09:12:02,436 adding 'skbio/io/format/tests/data/phylip_whitespace_in_header_1' 2025-10-16T09:12:02,437 adding 'skbio/io/format/tests/data/phylip_whitespace_in_header_2' 2025-10-16T09:12:02,438 adding 'skbio/io/format/tests/data/phylip_whitespace_in_header_3' 2025-10-16T09:12:02,476 adding 'skbio/io/format/tests/data/prot.emb' 2025-10-16T09:12:02,480 adding 'skbio/io/format/tests/data/prot_vec.emb' 2025-10-16T09:12:02,481 adding 'skbio/io/format/tests/data/qseq_invalid_filter' 2025-10-16T09:12:02,482 adding 'skbio/io/format/tests/data/qseq_invalid_lane' 2025-10-16T09:12:02,484 adding 'skbio/io/format/tests/data/qseq_invalid_read' 2025-10-16T09:12:02,485 adding 'skbio/io/format/tests/data/qseq_invalid_tile' 2025-10-16T09:12:02,486 adding 'skbio/io/format/tests/data/qseq_invalid_x' 2025-10-16T09:12:02,488 adding 'skbio/io/format/tests/data/qseq_invalid_y' 2025-10-16T09:12:02,489 adding 'skbio/io/format/tests/data/qseq_multi_seq_illumina1.3' 2025-10-16T09:12:02,490 adding 'skbio/io/format/tests/data/qseq_single_seq_sanger' 2025-10-16T09:12:02,492 adding 'skbio/io/format/tests/data/qual_2_seqs_defaults' 2025-10-16T09:12:02,493 adding 'skbio/io/format/tests/data/qual_3_seqs_defaults' 2025-10-16T09:12:02,494 adding 'skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch' 2025-10-16T09:12:02,495 adding 'skbio/io/format/tests/data/qual_3_seqs_defaults_extra' 2025-10-16T09:12:02,496 adding 'skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch' 2025-10-16T09:12:02,497 adding 'skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch' 2025-10-16T09:12:02,499 adding 'skbio/io/format/tests/data/qual_3_seqs_non_defaults' 2025-10-16T09:12:02,500 adding 'skbio/io/format/tests/data/qual_5_blanks_start_of_file' 2025-10-16T09:12:02,501 adding 'skbio/io/format/tests/data/qual_5_ws_lines_start_of_file' 2025-10-16T09:12:02,502 adding 'skbio/io/format/tests/data/qual_6_blanks_start_of_file' 2025-10-16T09:12:02,503 adding 'skbio/io/format/tests/data/qual_6_ws_lines_start_of_file' 2025-10-16T09:12:02,504 adding 'skbio/io/format/tests/data/qual_blank_lines_between_records' 2025-10-16T09:12:02,505 adding 'skbio/io/format/tests/data/qual_blanks_end_of_file' 2025-10-16T09:12:02,506 adding 'skbio/io/format/tests/data/qual_description_newline_replacement_empty_str' 2025-10-16T09:12:02,507 adding 'skbio/io/format/tests/data/qual_description_newline_replacement_multi_char' 2025-10-16T09:12:02,508 adding 'skbio/io/format/tests/data/qual_description_newline_replacement_none' 2025-10-16T09:12:02,509 adding 'skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str' 2025-10-16T09:12:02,510 adding 'skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char' 2025-10-16T09:12:02,511 adding 'skbio/io/format/tests/data/qual_id_whitespace_replacement_none' 2025-10-16T09:12:02,512 adding 'skbio/io/format/tests/data/qual_invalid_blank_line_after_header' 2025-10-16T09:12:02,513 adding 'skbio/io/format/tests/data/qual_invalid_blank_line_within_seq' 2025-10-16T09:12:02,515 adding 'skbio/io/format/tests/data/qual_invalid_blank_sequence' 2025-10-16T09:12:02,516 adding 'skbio/io/format/tests/data/qual_invalid_legacy_format' 2025-10-16T09:12:02,517 adding 'skbio/io/format/tests/data/qual_invalid_missing_header' 2025-10-16T09:12:02,518 adding 'skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first' 2025-10-16T09:12:02,519 adding 'skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last' 2025-10-16T09:12:02,520 adding 'skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle' 2025-10-16T09:12:02,521 adding 'skbio/io/format/tests/data/qual_invalid_qual_scores_float' 2025-10-16T09:12:02,522 adding 'skbio/io/format/tests/data/qual_invalid_qual_scores_negative' 2025-10-16T09:12:02,523 adding 'skbio/io/format/tests/data/qual_invalid_qual_scores_over_255' 2025-10-16T09:12:02,525 adding 'skbio/io/format/tests/data/qual_invalid_qual_scores_string' 2025-10-16T09:12:02,526 adding 'skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq' 2025-10-16T09:12:02,527 adding 'skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence' 2025-10-16T09:12:02,528 adding 'skbio/io/format/tests/data/qual_invalid_ws_line_after_header' 2025-10-16T09:12:02,529 adding 'skbio/io/format/tests/data/qual_max_width_1' 2025-10-16T09:12:02,531 adding 'skbio/io/format/tests/data/qual_max_width_5' 2025-10-16T09:12:02,532 adding 'skbio/io/format/tests/data/qual_multi_seq' 2025-10-16T09:12:02,533 adding 'skbio/io/format/tests/data/qual_multi_seq_roundtrip' 2025-10-16T09:12:02,534 adding 'skbio/io/format/tests/data/qual_prot_seqs_odd_labels' 2025-10-16T09:12:02,536 adding 'skbio/io/format/tests/data/qual_single_bio_seq_non_defaults' 2025-10-16T09:12:02,537 adding 'skbio/io/format/tests/data/qual_single_dna_seq_non_defaults' 2025-10-16T09:12:02,538 adding 'skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults' 2025-10-16T09:12:02,539 adding 'skbio/io/format/tests/data/qual_single_prot_seq_non_defaults' 2025-10-16T09:12:02,540 adding 'skbio/io/format/tests/data/qual_single_rna_seq_non_defaults' 2025-10-16T09:12:02,541 adding 'skbio/io/format/tests/data/qual_single_seq' 2025-10-16T09:12:02,542 adding 'skbio/io/format/tests/data/qual_tabular_msa_different_type' 2025-10-16T09:12:02,544 adding 'skbio/io/format/tests/data/qual_ws_lines_between_records' 2025-10-16T09:12:02,545 adding 'skbio/io/format/tests/data/qual_ws_lines_end_of_file' 2025-10-16T09:12:02,546 adding 'skbio/io/format/tests/data/sample-metadata-comments-comment-char-id.tsv' 2025-10-16T09:12:02,547 adding 'skbio/io/format/tests/data/sample-metadata-comments-mixed-case.tsv' 2025-10-16T09:12:02,549 adding 'skbio/io/format/tests/data/sample-metadata-comments.tsv' 2025-10-16T09:12:02,550 adding 'skbio/io/format/tests/data/sample-metadata-complete-types-directive.tsv' 2025-10-16T09:12:02,551 adding 'skbio/io/format/tests/data/sample-metadata-empty-rows.tsv' 2025-10-16T09:12:02,552 adding 'skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace-split-id.tsv' 2025-10-16T09:12:02,553 adding 'skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace.tsv' 2025-10-16T09:12:02,554 adding 'skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq' 2025-10-16T09:12:02,555 adding 'skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq' 2025-10-16T09:12:02,557 adding 'skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq' 2025-10-16T09:12:02,558 adding 'skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq' 2025-10-16T09:12:02,559 adding 'skbio/io/format/tests/data/stockholm_all_data_types' 2025-10-16T09:12:02,560 adding 'skbio/io/format/tests/data/stockholm_blank_lines' 2025-10-16T09:12:02,561 adding 'skbio/io/format/tests/data/stockholm_data_only' 2025-10-16T09:12:02,563 adding 'skbio/io/format/tests/data/stockholm_different_padding' 2025-10-16T09:12:02,564 adding 'skbio/io/format/tests/data/stockholm_differing_gc_data_length' 2025-10-16T09:12:02,565 adding 'skbio/io/format/tests/data/stockholm_differing_gr_data_length' 2025-10-16T09:12:02,566 adding 'skbio/io/format/tests/data/stockholm_differing_seq_lengths' 2025-10-16T09:12:02,567 adding 'skbio/io/format/tests/data/stockholm_duplicate_gc' 2025-10-16T09:12:02,568 adding 'skbio/io/format/tests/data/stockholm_duplicate_gr' 2025-10-16T09:12:02,569 adding 'skbio/io/format/tests/data/stockholm_duplicate_sequence_names' 2025-10-16T09:12:02,571 adding 'skbio/io/format/tests/data/stockholm_duplicate_tree_ids' 2025-10-16T09:12:02,572 adding 'skbio/io/format/tests/data/stockholm_extensive' 2025-10-16T09:12:02,573 adding 'skbio/io/format/tests/data/stockholm_extensive_mixed' 2025-10-16T09:12:02,574 adding 'skbio/io/format/tests/data/stockholm_invalid_data_type' 2025-10-16T09:12:02,575 adding 'skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr' 2025-10-16T09:12:02,576 adding 'skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs' 2025-10-16T09:12:02,577 adding 'skbio/io/format/tests/data/stockholm_malformed_data_line' 2025-10-16T09:12:02,579 adding 'skbio/io/format/tests/data/stockholm_malformed_gc_line' 2025-10-16T09:12:02,580 adding 'skbio/io/format/tests/data/stockholm_malformed_gf_line' 2025-10-16T09:12:02,581 adding 'skbio/io/format/tests/data/stockholm_malformed_gr_line' 2025-10-16T09:12:02,582 adding 'skbio/io/format/tests/data/stockholm_malformed_gs_line' 2025-10-16T09:12:02,583 adding 'skbio/io/format/tests/data/stockholm_metadata_only' 2025-10-16T09:12:02,584 adding 'skbio/io/format/tests/data/stockholm_minimal' 2025-10-16T09:12:02,585 adding 'skbio/io/format/tests/data/stockholm_missing_footer' 2025-10-16T09:12:02,586 adding 'skbio/io/format/tests/data/stockholm_missing_header' 2025-10-16T09:12:02,587 adding 'skbio/io/format/tests/data/stockholm_missing_reference_items' 2025-10-16T09:12:02,589 adding 'skbio/io/format/tests/data/stockholm_missing_rn_tag' 2025-10-16T09:12:02,590 adding 'skbio/io/format/tests/data/stockholm_multi_line_tree_no_id' 2025-10-16T09:12:02,591 adding 'skbio/io/format/tests/data/stockholm_multi_line_tree_with_id' 2025-10-16T09:12:02,592 adding 'skbio/io/format/tests/data/stockholm_multiple_msa' 2025-10-16T09:12:02,593 adding 'skbio/io/format/tests/data/stockholm_multiple_multi_line_trees' 2025-10-16T09:12:02,594 adding 'skbio/io/format/tests/data/stockholm_multiple_references' 2025-10-16T09:12:02,596 adding 'skbio/io/format/tests/data/stockholm_multiple_trees' 2025-10-16T09:12:02,597 adding 'skbio/io/format/tests/data/stockholm_no_data' 2025-10-16T09:12:02,598 adding 'skbio/io/format/tests/data/stockholm_nonstring_labels' 2025-10-16T09:12:02,599 adding 'skbio/io/format/tests/data/stockholm_rna' 2025-10-16T09:12:02,600 adding 'skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace' 2025-10-16T09:12:02,601 adding 'skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace' 2025-10-16T09:12:02,602 adding 'skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace' 2025-10-16T09:12:02,603 adding 'skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace' 2025-10-16T09:12:02,604 adding 'skbio/io/format/tests/data/stockholm_runon_references' 2025-10-16T09:12:02,605 adding 'skbio/io/format/tests/data/stockholm_runon_references_mixed' 2025-10-16T09:12:02,606 adding 'skbio/io/format/tests/data/stockholm_single_reference' 2025-10-16T09:12:02,607 adding 'skbio/io/format/tests/data/stockholm_single_tree_with_id' 2025-10-16T09:12:02,608 adding 'skbio/io/format/tests/data/stockholm_single_tree_without_id' 2025-10-16T09:12:02,609 adding 'skbio/io/format/tests/data/stockholm_two_of_each_metadata' 2025-10-16T09:12:02,611 adding 'skbio/io/format/tests/data/stockholm_whitespace_only_lines' 2025-10-16T09:12:02,612 adding 'skbio/io/format/tests/data/taxdump_names.dmp' 2025-10-16T09:12:02,613 adding 'skbio/io/format/tests/data/taxdump_nodes.dmp' 2025-10-16T09:12:02,847 adding 'skbio/io/format/tests/data/tiny_embedding_file.npz' 2025-10-16T09:12:02,862 adding 'skbio/io/format/tests/data/tsv_10_fields' 2025-10-16T09:12:02,863 adding 'skbio/io/format/tests/data/tsv_8_fields' 2025-10-16T09:12:02,864 adding 'skbio/io/format/tests/data/whitespace_only' 2025-10-16T09:12:02,865 adding 'skbio/io/format/tests/data/wrapping_as_illumina.fastq' 2025-10-16T09:12:02,866 adding 'skbio/io/format/tests/data/wrapping_as_sanger.fastq' 2025-10-16T09:12:02,867 adding 'skbio/io/format/tests/data/wrapping_original_sanger.fastq' 2025-10-16T09:12:02,869 adding 'skbio/io/tests/__init__.py' 2025-10-16T09:12:02,871 adding 'skbio/io/tests/test_iosources.py' 2025-10-16T09:12:02,875 adding 'skbio/io/tests/test_registry.py' 2025-10-16T09:12:02,878 adding 'skbio/io/tests/test_util.py' 2025-10-16T09:12:02,879 adding 'skbio/io/tests/data/big5_file' 2025-10-16T09:12:02,880 adding 'skbio/io/tests/data/big5_file.bz2' 2025-10-16T09:12:02,882 adding 'skbio/io/tests/data/big5_file.gz' 2025-10-16T09:12:02,883 adding 'skbio/io/tests/data/example_file' 2025-10-16T09:12:02,884 adding 'skbio/io/tests/data/example_file.bz2' 2025-10-16T09:12:02,885 adding 'skbio/io/tests/data/example_file.gz' 2025-10-16T09:12:02,886 adding 'skbio/io/tests/data/real_file' 2025-10-16T09:12:02,887 adding 'skbio/io/tests/data/real_file_2' 2025-10-16T09:12:02,889 adding 'skbio/metadata/__init__.py' 2025-10-16T09:12:02,891 adding 'skbio/metadata/_enan.py' 2025-10-16T09:12:02,955 adding 'skbio/metadata/_intersection.c' 2025-10-16T09:12:03,117 adding 'skbio/metadata/_intersection.cpython-311-arm-linux-gnueabihf.so' 2025-10-16T09:12:03,124 adding 'skbio/metadata/_intersection.pyx' 2025-10-16T09:12:03,129 adding 'skbio/metadata/_interval.py' 2025-10-16T09:12:03,134 adding 'skbio/metadata/_metadata.py' 2025-10-16T09:12:03,136 adding 'skbio/metadata/_mixin.py' 2025-10-16T09:12:03,138 adding 'skbio/metadata/_repr.py' 2025-10-16T09:12:03,142 adding 'skbio/metadata/_testing.py' 2025-10-16T09:12:03,143 adding 'skbio/metadata/base.py' 2025-10-16T09:12:03,146 adding 'skbio/metadata/io.py' 2025-10-16T09:12:03,147 adding 'skbio/metadata/missing.py' 2025-10-16T09:12:03,149 adding 'skbio/metadata/tests/__init__.py' 2025-10-16T09:12:03,151 adding 'skbio/metadata/tests/test_enan.py' 2025-10-16T09:12:03,152 adding 'skbio/metadata/tests/test_intersection.py' 2025-10-16T09:12:03,155 adding 'skbio/metadata/tests/test_interval.py' 2025-10-16T09:12:03,159 adding 'skbio/metadata/tests/test_io.py' 2025-10-16T09:12:03,163 adding 'skbio/metadata/tests/test_metadata.py' 2025-10-16T09:12:03,166 adding 'skbio/metadata/tests/test_metadata_column.py' 2025-10-16T09:12:03,167 adding 'skbio/metadata/tests/test_missing.py' 2025-10-16T09:12:03,169 adding 'skbio/metadata/tests/test_mixin.py' 2025-10-16T09:12:03,172 adding 'skbio/metadata/tests/data/invalid/column-name-conflicts-with-id-header.tsv' 2025-10-16T09:12:03,173 adding 'skbio/metadata/tests/data/invalid/comments-and-empty-rows-only.tsv' 2025-10-16T09:12:03,174 adding 'skbio/metadata/tests/data/invalid/data-longer-than-header.tsv' 2025-10-16T09:12:03,175 adding 'skbio/metadata/tests/data/invalid/directive-after-directives-section.tsv' 2025-10-16T09:12:03,176 adding 'skbio/metadata/tests/data/invalid/directive-before-header.tsv' 2025-10-16T09:12:03,177 adding 'skbio/metadata/tests/data/invalid/directive-longer-than-header.tsv' 2025-10-16T09:12:03,178 adding 'skbio/metadata/tests/data/invalid/duplicate-column-names-with-whitespace.tsv' 2025-10-16T09:12:03,179 adding 'skbio/metadata/tests/data/invalid/duplicate-column-names.tsv' 2025-10-16T09:12:03,180 adding 'skbio/metadata/tests/data/invalid/duplicate-directives.tsv' 2025-10-16T09:12:03,181 adding 'skbio/metadata/tests/data/invalid/duplicate-ids-with-whitespace.tsv' 2025-10-16T09:12:03,182 adding 'skbio/metadata/tests/data/invalid/duplicate-ids.tsv' 2025-10-16T09:12:03,183 adding 'skbio/metadata/tests/data/invalid/empty-column-name.tsv' 2025-10-16T09:12:03,184 adding 'skbio/metadata/tests/data/invalid/empty-file' 2025-10-16T09:12:03,186 adding 'skbio/metadata/tests/data/invalid/empty-id.tsv' 2025-10-16T09:12:03,187 adding 'skbio/metadata/tests/data/invalid/header-only-with-comments-and-empty-rows.tsv' 2025-10-16T09:12:03,188 adding 'skbio/metadata/tests/data/invalid/header-only.tsv' 2025-10-16T09:12:03,189 adding 'skbio/metadata/tests/data/invalid/id-conflicts-with-id-header.tsv' 2025-10-16T09:12:03,190 adding 'skbio/metadata/tests/data/invalid/invalid-header.tsv' 2025-10-16T09:12:03,191 adding 'skbio/metadata/tests/data/invalid/missing-unknown-scheme.tsv' 2025-10-16T09:12:03,192 adding 'skbio/metadata/tests/data/invalid/non-utf-8.tsv' 2025-10-16T09:12:03,193 adding 'skbio/metadata/tests/data/invalid/qiime1-empty.tsv' 2025-10-16T09:12:03,194 adding 'skbio/metadata/tests/data/invalid/simple-utf-16be.txt' 2025-10-16T09:12:03,195 adding 'skbio/metadata/tests/data/invalid/simple-utf-16le.txt' 2025-10-16T09:12:03,196 adding 'skbio/metadata/tests/data/invalid/types-directive-non-numeric.tsv' 2025-10-16T09:12:03,197 adding 'skbio/metadata/tests/data/invalid/unrecognized-column-type.tsv' 2025-10-16T09:12:03,198 adding 'skbio/metadata/tests/data/invalid/unrecognized-directive.tsv' 2025-10-16T09:12:03,200 adding 'skbio/metadata/tests/data/invalid/whitespace-only-column-name.tsv' 2025-10-16T09:12:03,201 adding 'skbio/metadata/tests/data/invalid/whitespace-only-id.tsv' 2025-10-16T09:12:03,203 adding 'skbio/metadata/tests/data/valid/BOM-simple.txt' 2025-10-16T09:12:03,204 adding 'skbio/metadata/tests/data/valid/all-cells-padded.tsv' 2025-10-16T09:12:03,205 adding 'skbio/metadata/tests/data/valid/biom-observation-metadata.tsv' 2025-10-16T09:12:03,206 adding 'skbio/metadata/tests/data/valid/case-insensitive-types-directive.tsv' 2025-10-16T09:12:03,207 adding 'skbio/metadata/tests/data/valid/column-order.tsv' 2025-10-16T09:12:03,209 adding 'skbio/metadata/tests/data/valid/comments.tsv' 2025-10-16T09:12:03,210 adding 'skbio/metadata/tests/data/valid/complete-types-directive.tsv' 2025-10-16T09:12:03,211 adding 'skbio/metadata/tests/data/valid/complete-types-directive_w_sk.tsv' 2025-10-16T09:12:03,212 adding 'skbio/metadata/tests/data/valid/empty-rows.tsv' 2025-10-16T09:12:03,213 adding 'skbio/metadata/tests/data/valid/empty-types-directive.tsv' 2025-10-16T09:12:03,215 adding 'skbio/metadata/tests/data/valid/jagged-trailing-columns.tsv' 2025-10-16T09:12:03,216 adding 'skbio/metadata/tests/data/valid/jagged.tsv' 2025-10-16T09:12:03,217 adding 'skbio/metadata/tests/data/valid/leading-trailing-whitespace.tsv' 2025-10-16T09:12:03,218 adding 'skbio/metadata/tests/data/valid/mac-line-endings.tsv' 2025-10-16T09:12:03,219 adding 'skbio/metadata/tests/data/valid/minimal.tsv' 2025-10-16T09:12:03,220 adding 'skbio/metadata/tests/data/valid/missing-data.tsv' 2025-10-16T09:12:03,222 adding 'skbio/metadata/tests/data/valid/missing-insdc-no-directive.tsv' 2025-10-16T09:12:03,223 adding 'skbio/metadata/tests/data/valid/missing-insdc.tsv' 2025-10-16T09:12:03,224 adding 'skbio/metadata/tests/data/valid/no-columns.tsv' 2025-10-16T09:12:03,225 adding 'skbio/metadata/tests/data/valid/no-id-or-column-name-type-cast.tsv' 2025-10-16T09:12:03,226 adding 'skbio/metadata/tests/data/valid/no-newline-at-eof.tsv' 2025-10-16T09:12:03,227 adding 'skbio/metadata/tests/data/valid/non-standard-characters.tsv' 2025-10-16T09:12:03,228 adding 'skbio/metadata/tests/data/valid/numeric-column.tsv' 2025-10-16T09:12:03,229 adding 'skbio/metadata/tests/data/valid/override-insdc.tsv' 2025-10-16T09:12:03,230 adding 'skbio/metadata/tests/data/valid/partial-types-directive.tsv' 2025-10-16T09:12:03,231 adding 'skbio/metadata/tests/data/valid/qiime1.tsv' 2025-10-16T09:12:03,232 adding 'skbio/metadata/tests/data/valid/qiita-preparation-information.tsv' 2025-10-16T09:12:03,233 adding 'skbio/metadata/tests/data/valid/qiita-sample-information.tsv' 2025-10-16T09:12:03,235 adding 'skbio/metadata/tests/data/valid/recommended-ids.tsv' 2025-10-16T09:12:03,236 adding 'skbio/metadata/tests/data/valid/rows-shorter-than-header.tsv' 2025-10-16T09:12:03,237 adding 'skbio/metadata/tests/data/valid/simple-with-directive.tsv' 2025-10-16T09:12:03,238 adding 'skbio/metadata/tests/data/valid/simple.tsv' 2025-10-16T09:12:03,239 adding 'skbio/metadata/tests/data/valid/simple.txt' 2025-10-16T09:12:03,241 adding 'skbio/metadata/tests/data/valid/single-column.tsv' 2025-10-16T09:12:03,242 adding 'skbio/metadata/tests/data/valid/single-id.tsv' 2025-10-16T09:12:03,243 adding 'skbio/metadata/tests/data/valid/trailing-columns.tsv' 2025-10-16T09:12:03,244 adding 'skbio/metadata/tests/data/valid/unix-line-endings.tsv' 2025-10-16T09:12:03,245 adding 'skbio/metadata/tests/data/valid/windows-line-endings.tsv' 2025-10-16T09:12:03,248 adding 'skbio/sequence/__init__.py' 2025-10-16T09:12:03,250 adding 'skbio/sequence/_alphabet.py' 2025-10-16T09:12:03,252 adding 'skbio/sequence/_dna.py' 2025-10-16T09:12:03,255 adding 'skbio/sequence/_genetic_code.py' 2025-10-16T09:12:03,258 adding 'skbio/sequence/_grammared_sequence.py' 2025-10-16T09:12:03,260 adding 'skbio/sequence/_nucleotide_mixin.py' 2025-10-16T09:12:03,262 adding 'skbio/sequence/_protein.py' 2025-10-16T09:12:03,263 adding 'skbio/sequence/_repr.py' 2025-10-16T09:12:03,266 adding 'skbio/sequence/_rna.py' 2025-10-16T09:12:03,274 adding 'skbio/sequence/_sequence.py' 2025-10-16T09:12:03,279 adding 'skbio/sequence/_substitution.py' 2025-10-16T09:12:03,281 adding 'skbio/sequence/distance.py' 2025-10-16T09:12:03,283 adding 'skbio/sequence/tests/__init__.py' 2025-10-16T09:12:03,284 adding 'skbio/sequence/tests/test_alphabet.py' 2025-10-16T09:12:03,286 adding 'skbio/sequence/tests/test_distance.py' 2025-10-16T09:12:03,287 adding 'skbio/sequence/tests/test_dna.py' 2025-10-16T09:12:03,289 adding 'skbio/sequence/tests/test_genetic_code.py' 2025-10-16T09:12:03,292 adding 'skbio/sequence/tests/test_grammared_sequence.py' 2025-10-16T09:12:03,295 adding 'skbio/sequence/tests/test_nucleotide_sequences.py' 2025-10-16T09:12:03,296 adding 'skbio/sequence/tests/test_protein.py' 2025-10-16T09:12:03,298 adding 'skbio/sequence/tests/test_rna.py' 2025-10-16T09:12:03,307 adding 'skbio/sequence/tests/test_sequence.py' 2025-10-16T09:12:03,309 adding 'skbio/sequence/tests/test_substitution.py' 2025-10-16T09:12:03,311 adding 'skbio/stats/__init__.py' 2025-10-16T09:12:03,312 adding 'skbio/stats/_misc.py' 2025-10-16T09:12:03,314 adding 'skbio/stats/_subsample.py' 2025-10-16T09:12:03,326 adding 'skbio/stats/composition.py' 2025-10-16T09:12:03,330 adding 'skbio/stats/gradient.py' 2025-10-16T09:12:03,336 adding 'skbio/stats/power.py' 2025-10-16T09:12:03,339 adding 'skbio/stats/distance/__init__.py' 2025-10-16T09:12:03,341 adding 'skbio/stats/distance/_anosim.py' 2025-10-16T09:12:03,347 adding 'skbio/stats/distance/_base.py' 2025-10-16T09:12:03,349 adding 'skbio/stats/distance/_bioenv.py' 2025-10-16T09:12:03,483 adding 'skbio/stats/distance/_cutils.c' 2025-10-16T09:12:03,837 adding 'skbio/stats/distance/_cutils.cpython-311-arm-linux-gnueabihf.so' 2025-10-16T09:12:03,850 adding 'skbio/stats/distance/_cutils.pyx' 2025-10-16T09:12:03,854 adding 'skbio/stats/distance/_mantel.py' 2025-10-16T09:12:03,855 adding 'skbio/stats/distance/_permanova.py' 2025-10-16T09:12:03,858 adding 'skbio/stats/distance/_permdisp.py' 2025-10-16T09:12:03,859 adding 'skbio/stats/distance/_utils.py' 2025-10-16T09:12:03,861 adding 'skbio/stats/distance/tests/__init__.py' 2025-10-16T09:12:03,862 adding 'skbio/stats/distance/tests/test_anosim.py' 2025-10-16T09:12:03,866 adding 'skbio/stats/distance/tests/test_base.py' 2025-10-16T09:12:03,868 adding 'skbio/stats/distance/tests/test_bioenv.py' 2025-10-16T09:12:03,871 adding 'skbio/stats/distance/tests/test_mantel.py' 2025-10-16T09:12:03,873 adding 'skbio/stats/distance/tests/test_permanova.py' 2025-10-16T09:12:03,875 adding 'skbio/stats/distance/tests/test_permdisp.py' 2025-10-16T09:12:03,876 adding 'skbio/stats/distance/tests/test_util.py' 2025-10-16T09:12:03,879 adding 'skbio/stats/distance/tests/data/bioenv_df_vegan.txt' 2025-10-16T09:12:03,880 adding 'skbio/stats/distance/tests/data/bioenv_dm_vegan.txt' 2025-10-16T09:12:03,882 adding 'skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt' 2025-10-16T09:12:03,883 adding 'skbio/stats/distance/tests/data/df.txt' 2025-10-16T09:12:03,884 adding 'skbio/stats/distance/tests/data/df_extra_column.txt' 2025-10-16T09:12:03,885 adding 'skbio/stats/distance/tests/data/dm.txt' 2025-10-16T09:12:03,886 adding 'skbio/stats/distance/tests/data/dm2.txt' 2025-10-16T09:12:03,888 adding 'skbio/stats/distance/tests/data/dm3.txt' 2025-10-16T09:12:03,889 adding 'skbio/stats/distance/tests/data/dm4.txt' 2025-10-16T09:12:03,890 adding 'skbio/stats/distance/tests/data/dm_reordered.txt' 2025-10-16T09:12:03,891 adding 'skbio/stats/distance/tests/data/exp_results.txt' 2025-10-16T09:12:03,892 adding 'skbio/stats/distance/tests/data/exp_results_different_column_order.txt' 2025-10-16T09:12:03,894 adding 'skbio/stats/distance/tests/data/exp_results_single_column.txt' 2025-10-16T09:12:03,898 adding 'skbio/stats/distance/tests/data/frameSeries_dm.tsv' 2025-10-16T09:12:03,900 adding 'skbio/stats/distance/tests/data/frameSeries_grouping.tsv' 2025-10-16T09:12:03,902 adding 'skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt' 2025-10-16T09:12:03,904 adding 'skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt' 2025-10-16T09:12:03,907 adding 'skbio/stats/distance/tests/data/moving_pictures_dm.tsv' 2025-10-16T09:12:03,908 adding 'skbio/stats/distance/tests/data/moving_pictures_mf.tsv' 2025-10-16T09:12:03,910 adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt' 2025-10-16T09:12:03,911 adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt' 2025-10-16T09:12:03,912 adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt' 2025-10-16T09:12:03,913 adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt' 2025-10-16T09:12:03,914 adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt' 2025-10-16T09:12:03,915 adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt' 2025-10-16T09:12:03,917 adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt' 2025-10-16T09:12:03,919 adding 'skbio/stats/evolve/__init__.py' 2025-10-16T09:12:03,921 adding 'skbio/stats/evolve/_hommola.py' 2025-10-16T09:12:03,922 adding 'skbio/stats/evolve/tests/__init__.py' 2025-10-16T09:12:03,924 adding 'skbio/stats/evolve/tests/test_hommola.py' 2025-10-16T09:12:03,926 adding 'skbio/stats/ordination/__init__.py' 2025-10-16T09:12:03,928 adding 'skbio/stats/ordination/_canonical_correspondence_analysis.py' 2025-10-16T09:12:03,930 adding 'skbio/stats/ordination/_correspondence_analysis.py' 2025-10-16T09:12:04,040 adding 'skbio/stats/ordination/_cutils.c' 2025-10-16T09:12:04,317 adding 'skbio/stats/ordination/_cutils.cpython-311-arm-linux-gnueabihf.so' 2025-10-16T09:12:04,326 adding 'skbio/stats/ordination/_cutils.pyx' 2025-10-16T09:12:04,329 adding 'skbio/stats/ordination/_ordination_results.py' 2025-10-16T09:12:04,332 adding 'skbio/stats/ordination/_principal_coordinate_analysis.py' 2025-10-16T09:12:04,334 adding 'skbio/stats/ordination/_redundancy_analysis.py' 2025-10-16T09:12:04,336 adding 'skbio/stats/ordination/_utils.py' 2025-10-16T09:12:04,338 adding 'skbio/stats/ordination/tests/__init__.py' 2025-10-16T09:12:04,339 adding 'skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py' 2025-10-16T09:12:04,341 adding 'skbio/stats/ordination/tests/test_correspondence_analysis.py' 2025-10-16T09:12:04,343 adding 'skbio/stats/ordination/tests/test_ordination_results.py' 2025-10-16T09:12:04,346 adding 'skbio/stats/ordination/tests/test_principal_coordinate_analysis.py' 2025-10-16T09:12:04,347 adding 'skbio/stats/ordination/tests/test_redundancy_analysis.py' 2025-10-16T09:12:04,349 adding 'skbio/stats/ordination/tests/test_util.py' 2025-10-16T09:12:04,351 adding 'skbio/stats/ordination/tests/data/L&L_CA_data' 2025-10-16T09:12:04,353 adding 'skbio/stats/ordination/tests/data/PCoA_biplot_descriptors' 2025-10-16T09:12:04,354 adding 'skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors' 2025-10-16T09:12:04,355 adding 'skbio/stats/ordination/tests/data/PCoA_sample_data' 2025-10-16T09:12:04,356 adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_12dim' 2025-10-16T09:12:04,358 adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_2' 2025-10-16T09:12:04,359 adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_3' 2025-10-16T09:12:04,360 adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim' 2025-10-16T09:12:04,361 adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim' 2025-10-16T09:12:04,362 adding 'skbio/stats/ordination/tests/data/PCoA_skbio' 2025-10-16T09:12:04,364 adding 'skbio/stats/ordination/tests/data/example2_X' 2025-10-16T09:12:04,365 adding 'skbio/stats/ordination/tests/data/example2_Y' 2025-10-16T09:12:04,366 adding 'skbio/stats/ordination/tests/data/example2_biplot_scaling1' 2025-10-16T09:12:04,367 adding 'skbio/stats/ordination/tests/data/example2_biplot_scaling2' 2025-10-16T09:12:04,368 adding 'skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1' 2025-10-16T09:12:04,370 adding 'skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2' 2025-10-16T09:12:04,371 adding 'skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan' 2025-10-16T09:12:04,372 adding 'skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan' 2025-10-16T09:12:04,373 adding 'skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan' 2025-10-16T09:12:04,374 adding 'skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan' 2025-10-16T09:12:04,376 adding 'skbio/stats/ordination/tests/data/example3_X' 2025-10-16T09:12:04,377 adding 'skbio/stats/ordination/tests/data/example3_Y' 2025-10-16T09:12:04,378 adding 'skbio/stats/ordination/tests/data/example3_biplot_scaling1' 2025-10-16T09:12:04,379 adding 'skbio/stats/ordination/tests/data/example3_biplot_scaling2' 2025-10-16T09:12:04,381 adding 'skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1' 2025-10-16T09:12:04,382 adding 'skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2' 2025-10-16T09:12:04,383 adding 'skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan' 2025-10-16T09:12:04,385 adding 'skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan' 2025-10-16T09:12:04,386 adding 'skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan' 2025-10-16T09:12:04,388 adding 'skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan' 2025-10-16T09:12:04,389 adding 'skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site' 2025-10-16T09:12:04,391 adding 'skbio/stats/ordination/tests/data/exp_PCoAzeros_site' 2025-10-16T09:12:04,392 adding 'skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv' 2025-10-16T09:12:04,393 adding 'skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv' 2025-10-16T09:12:04,395 adding 'skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv' 2025-10-16T09:12:04,396 adding 'skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv' 2025-10-16T09:12:04,397 adding 'skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv' 2025-10-16T09:12:04,399 adding 'skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv' 2025-10-16T09:12:04,400 adding 'skbio/stats/ordination/tests/data/varechem.csv' 2025-10-16T09:12:04,402 adding 'skbio/stats/ordination/tests/data/varespec.csv' 2025-10-16T09:12:04,404 adding 'skbio/stats/tests/__init__.py' 2025-10-16T09:12:04,412 adding 'skbio/stats/tests/test_composition.py' 2025-10-16T09:12:04,416 adding 'skbio/stats/tests/test_gradient.py' 2025-10-16T09:12:04,418 adding 'skbio/stats/tests/test_misc.py' 2025-10-16T09:12:04,421 adding 'skbio/stats/tests/test_ndarray.py' 2025-10-16T09:12:04,424 adding 'skbio/stats/tests/test_power.py' 2025-10-16T09:12:04,425 adding 'skbio/stats/tests/test_subsample.py' 2025-10-16T09:12:04,427 adding 'skbio/stats/tests/data/cr_data_out' 2025-10-16T09:12:04,428 adding 'skbio/stats/tests/data/cr_data_raw' 2025-10-16T09:12:04,430 adding 'skbio/stats/tests/data/cr_no_data_out' 2025-10-16T09:12:04,431 adding 'skbio/stats/tests/data/cr_no_data_raw' 2025-10-16T09:12:04,432 adding 'skbio/stats/tests/data/gr_w_msg_out' 2025-10-16T09:12:04,433 adding 'skbio/stats/tests/data/gr_w_msg_raw' 2025-10-16T09:12:04,434 adding 'skbio/stats/tests/data/gr_wo_msg_out' 2025-10-16T09:12:04,435 adding 'skbio/stats/tests/data/gr_wo_msg_raw' 2025-10-16T09:12:04,437 adding 'skbio/stats/tests/data/vr_out' 2025-10-16T09:12:04,438 adding 'skbio/stats/tests/data/vr_raw' 2025-10-16T09:12:04,439 adding 'skbio/stats/tests/data/vr_real_out' 2025-10-16T09:12:04,440 adding 'skbio/stats/tests/data/vr_real_raw' 2025-10-16T09:12:04,443 adding 'skbio/table/__init__.py' 2025-10-16T09:12:04,447 adding 'skbio/table/_augment.py' 2025-10-16T09:12:04,449 adding 'skbio/table/_base.py' 2025-10-16T09:12:04,450 adding 'skbio/table/_tabular.py' 2025-10-16T09:12:04,452 adding 'skbio/table/tests/__init__.py' 2025-10-16T09:12:04,456 adding 'skbio/table/tests/test_augment.py' 2025-10-16T09:12:04,457 adding 'skbio/table/tests/test_base.py' 2025-10-16T09:12:04,459 adding 'skbio/table/tests/test_tabular.py' 2025-10-16T09:12:04,461 adding 'skbio/tests/__init__.py' 2025-10-16T09:12:04,462 adding 'skbio/tests/test_base.py' 2025-10-16T09:12:04,464 adding 'skbio/tests/test_config.py' 2025-10-16T09:12:04,466 adding 'skbio/tests/test_workflow.py' 2025-10-16T09:12:04,469 adding 'skbio/tree/__init__.py' 2025-10-16T09:12:04,612 adding 'skbio/tree/_c_me.c' 2025-10-16T09:12:04,874 adding 'skbio/tree/_c_me.cpython-311-arm-linux-gnueabihf.so' 2025-10-16T09:12:04,889 adding 'skbio/tree/_c_me.pyx' 2025-10-16T09:12:04,993 adding 'skbio/tree/_c_nj.c' 2025-10-16T09:12:05,235 adding 'skbio/tree/_c_nj.cpython-311-arm-linux-gnueabihf.so' 2025-10-16T09:12:05,242 adding 'skbio/tree/_c_nj.pyx' 2025-10-16T09:12:05,244 adding 'skbio/tree/_compare.py' 2025-10-16T09:12:05,246 adding 'skbio/tree/_exception.py' 2025-10-16T09:12:05,248 adding 'skbio/tree/_majority_rule.py' 2025-10-16T09:12:05,254 adding 'skbio/tree/_me.py' 2025-10-16T09:12:05,257 adding 'skbio/tree/_nj.py' 2025-10-16T09:12:05,279 adding 'skbio/tree/_tree.py' 2025-10-16T09:12:05,282 adding 'skbio/tree/_upgma.py' 2025-10-16T09:12:05,283 adding 'skbio/tree/_utils.py' 2025-10-16T09:12:05,285 adding 'skbio/tree/tests/__init__.py' 2025-10-16T09:12:05,287 adding 'skbio/tree/tests/test_compare.py' 2025-10-16T09:12:05,288 adding 'skbio/tree/tests/test_majority_rule.py' 2025-10-16T09:12:05,294 adding 'skbio/tree/tests/test_me.py' 2025-10-16T09:12:05,296 adding 'skbio/tree/tests/test_nj.py' 2025-10-16T09:12:05,306 adding 'skbio/tree/tests/test_tree.py' 2025-10-16T09:12:05,308 adding 'skbio/tree/tests/test_upgma.py' 2025-10-16T09:12:05,309 adding 'skbio/tree/tests/test_utils.py' 2025-10-16T09:12:05,311 adding 'skbio/util/__init__.py' 2025-10-16T09:12:05,312 adding 'skbio/util/_array.py' 2025-10-16T09:12:05,314 adding 'skbio/util/_decorator.py' 2025-10-16T09:12:05,315 adding 'skbio/util/_docstring.py' 2025-10-16T09:12:05,317 adding 'skbio/util/_exception.py' 2025-10-16T09:12:05,318 adding 'skbio/util/_gpu.py' 2025-10-16T09:12:05,319 adding 'skbio/util/_misc.py' 2025-10-16T09:12:05,320 adding 'skbio/util/_optionals.py' 2025-10-16T09:12:05,322 adding 'skbio/util/_plotting.py' 2025-10-16T09:12:05,323 adding 'skbio/util/_random.py' 2025-10-16T09:12:05,325 adding 'skbio/util/_testing.py' 2025-10-16T09:12:05,327 adding 'skbio/util/_typing.py' 2025-10-16T09:12:05,328 adding 'skbio/util/_warning.py' 2025-10-16T09:12:05,330 adding 'skbio/util/tests/__init__.py' 2025-10-16T09:12:05,331 adding 'skbio/util/tests/test_array.py' 2025-10-16T09:12:05,333 adding 'skbio/util/tests/test_decorator.py' 2025-10-16T09:12:05,334 adding 'skbio/util/tests/test_docstring.py' 2025-10-16T09:12:05,336 adding 'skbio/util/tests/test_misc.py' 2025-10-16T09:12:05,337 adding 'skbio/util/tests/test_optionals.py' 2025-10-16T09:12:05,339 adding 'skbio/util/tests/test_plotting.py' 2025-10-16T09:12:05,340 adding 'skbio/util/tests/test_random.py' 2025-10-16T09:12:05,342 adding 'skbio/util/tests/test_testing.py' 2025-10-16T09:12:05,343 adding 'skbio/util/tests/test_warning.py' 2025-10-16T09:12:05,345 adding 'scikit_bio-0.7.0.dist-info/METADATA' 2025-10-16T09:12:05,346 adding 'scikit_bio-0.7.0.dist-info/WHEEL' 2025-10-16T09:12:05,347 adding 'scikit_bio-0.7.0.dist-info/top_level.txt' 2025-10-16T09:12:05,360 adding 'scikit_bio-0.7.0.dist-info/RECORD' 2025-10-16T09:12:05,462 removing build/bdist.linux-armv7l/wheel 2025-10-16T09:12:06,685 Building wheel for scikit-bio (pyproject.toml): finished with status 'done' 2025-10-16T09:12:06,879 Created wheel for scikit-bio: filename=scikit_bio-0.7.0-cp311-cp311-linux_armv7l.whl size=8839038 sha256=2507236b76ff2093cede8127ea000205cd62fe6f26c6f45e30d8c05640fb3254 2025-10-16T09:12:06,881 Stored in directory: /tmp/pip-ephem-wheel-cache-1o5yd8nb/wheels/08/2d/c2/76c9fb07cdeb839d1c95fd6b9984a6bcf51032e417a3fc2df5 2025-10-16T09:12:06,921 Successfully built scikit-bio 2025-10-16T09:12:07,230 Removed build tracker: '/tmp/pip-build-tracker-moh2yr5m'