2025-10-18T00:55:06,440 Created temporary directory: /tmp/pip-ephem-wheel-cache-oyys_ucz 2025-10-18T00:55:06,442 Created temporary directory: /tmp/pip-build-tracker-mlpr6le0 2025-10-18T00:55:06,442 Initialized build tracking at /tmp/pip-build-tracker-mlpr6le0 2025-10-18T00:55:06,443 Created build tracker: /tmp/pip-build-tracker-mlpr6le0 2025-10-18T00:55:06,443 Entered build tracker: /tmp/pip-build-tracker-mlpr6le0 2025-10-18T00:55:06,444 Created temporary directory: /tmp/pip-wheel-z73rpiof 2025-10-18T00:55:06,447 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://archive1.piwheels.org/simple/mdanalysistests/MDAnalysisTests-0.8.0rc4-py3-none-any.whl#sha256=837d4981dad2f2cb24179645cb8af06ac71607f8c9ea9653d2b2994c34bedb6e (from https://www.piwheels.org/simple/mdanalysistests/) 2025-10-18T00:55:07,249 Skipping link: No binaries permitted for mdanalysistests: https://archive1.piwheels.org/simple/mdanalysistests/MDAnalysisTests-0.8.0rc2-py3-none-any.whl#sha256=92cf87faf12f415e429b98c9a3aaf7d978ba12e0fa060eed3488232396a18af3 (from https://www.piwheels.org/simple/mdanalysistests/) 2025-10-18T00:55:07,249 Skipping link: not a file: https://www.piwheels.org/simple/mdanalysistests/ 2025-10-18T00:55:07,250 Skipping link: not a file: https://pypi.org/simple/mdanalysistests/ 2025-10-18T00:55:07,274 Given no hashes to check 1 links for project 'mdanalysistests': discarding no candidates 2025-10-18T00:55:07,292 Collecting mdanalysistests==2.10.0 2025-10-18T00:55:07,294 Created temporary directory: /tmp/pip-unpack-a25kcl84 2025-10-18T00:55:07,525 Downloading mdanalysistests-2.10.0.tar.gz (57.9 MB) 2025-10-18T00:55:21,813 Added mdanalysistests==2.10.0 from https://files.pythonhosted.org/packages/eb/75/1ad63dbab60b2aa34ebb0730946bdeaf98afd3113430f57e4a85247f5829/mdanalysistests-2.10.0.tar.gz to build tracker '/tmp/pip-build-tracker-mlpr6le0' 2025-10-18T00:55:21,819 Created temporary directory: /tmp/pip-build-env-dhgxfplx 2025-10-18T00:55:21,824 Installing build dependencies: started 2025-10-18T00:55:21,825 Running command pip subprocess to install build dependencies 2025-10-18T00:55:22,982 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-10-18T00:55:23,579 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-18T00:55:23,602 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-18T00:55:25,390 Collecting setuptools>=40.9.0 2025-10-18T00:55:25,561 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-10-18T00:55:28,657 Installing collected packages: setuptools 2025-10-18T00:55:33,156 Successfully installed setuptools-80.9.0 2025-10-18T00:55:33,422 Installing build dependencies: finished with status 'done' 2025-10-18T00:55:33,429 Getting requirements to build wheel: started 2025-10-18T00:55:33,430 Running command Getting requirements to build wheel 2025-10-18T00:55:34,082 /tmp/pip-build-env-dhgxfplx/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-18T00:55:34,082 !! 2025-10-18T00:55:34,083 ******************************************************************************** 2025-10-18T00:55:34,084 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-18T00:55:34,085 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-18T00:55:34,086 or your builds will no longer be supported. 2025-10-18T00:55:34,087 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-18T00:55:34,087 ******************************************************************************** 2025-10-18T00:55:34,088 !! 2025-10-18T00:55:34,088 corresp(dist, value, root_dir) 2025-10-18T00:55:34,163 /tmp/pip-build-env-dhgxfplx/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-18T00:55:34,163 !! 2025-10-18T00:55:34,164 ******************************************************************************** 2025-10-18T00:55:34,165 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-18T00:55:34,165 License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+) 2025-10-18T00:55:34,166 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-18T00:55:34,167 ******************************************************************************** 2025-10-18T00:55:34,168 !! 2025-10-18T00:55:34,169 dist._finalize_license_expression() 2025-10-18T00:55:34,169 /tmp/pip-build-env-dhgxfplx/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-18T00:55:34,170 !! 2025-10-18T00:55:34,171 ******************************************************************************** 2025-10-18T00:55:34,171 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-18T00:55:34,172 License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+) 2025-10-18T00:55:34,173 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-18T00:55:34,174 ******************************************************************************** 2025-10-18T00:55:34,175 !! 2025-10-18T00:55:34,175 self._finalize_license_expression() 2025-10-18T00:55:34,176 running egg_info 2025-10-18T00:55:34,181 writing MDAnalysisTests.egg-info/PKG-INFO 2025-10-18T00:55:34,188 writing dependency_links to MDAnalysisTests.egg-info/dependency_links.txt 2025-10-18T00:55:34,190 writing requirements to MDAnalysisTests.egg-info/requires.txt 2025-10-18T00:55:34,192 writing top-level names to MDAnalysisTests.egg-info/top_level.txt 2025-10-18T00:55:34,561 reading manifest file 'MDAnalysisTests.egg-info/SOURCES.txt' 2025-10-18T00:55:34,597 reading manifest template 'MANIFEST.in' 2025-10-18T00:55:34,599 warning: no files found matching 'TODO' 2025-10-18T00:55:34,600 warning: no files found matching 'SUMMARY.txt' 2025-10-18T00:55:34,641 warning: no previously-included files matching '*~' found anywhere in distribution 2025-10-18T00:55:34,645 warning: no previously-included files matching '*.pkl' found anywhere in distribution 2025-10-18T00:55:34,645 adding license file 'LICENSE' 2025-10-18T00:55:34,646 adding license file 'AUTHORS' 2025-10-18T00:55:34,682 writing manifest file 'MDAnalysisTests.egg-info/SOURCES.txt' 2025-10-18T00:55:34,782 Getting requirements to build wheel: finished with status 'done' 2025-10-18T00:55:34,785 Created temporary directory: /tmp/pip-modern-metadata-vixmsuch 2025-10-18T00:55:34,788 Preparing metadata (pyproject.toml): started 2025-10-18T00:55:34,789 Running command Preparing metadata (pyproject.toml) 2025-10-18T00:55:35,374 /tmp/pip-build-env-dhgxfplx/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-18T00:55:35,374 !! 2025-10-18T00:55:35,376 ******************************************************************************** 2025-10-18T00:55:35,376 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-18T00:55:35,377 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-18T00:55:35,378 or your builds will no longer be supported. 2025-10-18T00:55:35,379 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-18T00:55:35,379 ******************************************************************************** 2025-10-18T00:55:35,380 !! 2025-10-18T00:55:35,380 corresp(dist, value, root_dir) 2025-10-18T00:55:35,474 /tmp/pip-build-env-dhgxfplx/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-18T00:55:35,475 !! 2025-10-18T00:55:35,476 ******************************************************************************** 2025-10-18T00:55:35,476 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-18T00:55:35,478 License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+) 2025-10-18T00:55:35,479 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-18T00:55:35,480 ******************************************************************************** 2025-10-18T00:55:35,481 !! 2025-10-18T00:55:35,481 dist._finalize_license_expression() 2025-10-18T00:55:35,483 /tmp/pip-build-env-dhgxfplx/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-18T00:55:35,483 !! 2025-10-18T00:55:35,485 ******************************************************************************** 2025-10-18T00:55:35,486 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-18T00:55:35,487 License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+) 2025-10-18T00:55:35,489 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-18T00:55:35,490 ******************************************************************************** 2025-10-18T00:55:35,491 !! 2025-10-18T00:55:35,492 self._finalize_license_expression() 2025-10-18T00:55:35,493 running dist_info 2025-10-18T00:55:35,505 creating /tmp/pip-modern-metadata-vixmsuch/MDAnalysisTests.egg-info 2025-10-18T00:55:35,506 writing /tmp/pip-modern-metadata-vixmsuch/MDAnalysisTests.egg-info/PKG-INFO 2025-10-18T00:55:35,513 writing dependency_links to /tmp/pip-modern-metadata-vixmsuch/MDAnalysisTests.egg-info/dependency_links.txt 2025-10-18T00:55:35,515 writing requirements to /tmp/pip-modern-metadata-vixmsuch/MDAnalysisTests.egg-info/requires.txt 2025-10-18T00:55:35,516 writing top-level names to /tmp/pip-modern-metadata-vixmsuch/MDAnalysisTests.egg-info/top_level.txt 2025-10-18T00:55:35,518 writing manifest file '/tmp/pip-modern-metadata-vixmsuch/MDAnalysisTests.egg-info/SOURCES.txt' 2025-10-18T00:55:35,665 reading manifest file '/tmp/pip-modern-metadata-vixmsuch/MDAnalysisTests.egg-info/SOURCES.txt' 2025-10-18T00:55:35,668 reading manifest template 'MANIFEST.in' 2025-10-18T00:55:35,669 warning: no files found matching 'TODO' 2025-10-18T00:55:35,670 warning: no files found matching 'SUMMARY.txt' 2025-10-18T00:55:35,710 warning: no previously-included files matching '*~' found anywhere in distribution 2025-10-18T00:55:35,712 warning: no previously-included files matching '*.pkl' found anywhere in distribution 2025-10-18T00:55:35,713 adding license file 'LICENSE' 2025-10-18T00:55:35,714 adding license file 'AUTHORS' 2025-10-18T00:55:35,740 writing manifest file '/tmp/pip-modern-metadata-vixmsuch/MDAnalysisTests.egg-info/SOURCES.txt' 2025-10-18T00:55:35,742 creating '/tmp/pip-modern-metadata-vixmsuch/mdanalysistests-2.10.0.dist-info' 2025-10-18T00:55:35,879 Preparing metadata (pyproject.toml): finished with status 'done' 2025-10-18T00:55:35,901 Source in /tmp/pip-wheel-z73rpiof/mdanalysistests_c1d54e4ab70a4382b222f3577cf49def has version 2.10.0, which satisfies requirement mdanalysistests==2.10.0 from https://files.pythonhosted.org/packages/eb/75/1ad63dbab60b2aa34ebb0730946bdeaf98afd3113430f57e4a85247f5829/mdanalysistests-2.10.0.tar.gz 2025-10-18T00:55:35,902 Removed mdanalysistests==2.10.0 from https://files.pythonhosted.org/packages/eb/75/1ad63dbab60b2aa34ebb0730946bdeaf98afd3113430f57e4a85247f5829/mdanalysistests-2.10.0.tar.gz from build tracker '/tmp/pip-build-tracker-mlpr6le0' 2025-10-18T00:55:35,940 Created temporary directory: /tmp/pip-unpack-e3e6tpji 2025-10-18T00:55:35,941 Building wheels for collected packages: mdanalysistests 2025-10-18T00:55:35,946 Created temporary directory: /tmp/pip-wheel-tochixfw 2025-10-18T00:55:35,946 Destination directory: /tmp/pip-wheel-tochixfw 2025-10-18T00:55:35,949 Building wheel for mdanalysistests (pyproject.toml): started 2025-10-18T00:55:35,950 Running command Building wheel for mdanalysistests (pyproject.toml) 2025-10-18T00:55:36,557 /tmp/pip-build-env-dhgxfplx/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-18T00:55:36,558 !! 2025-10-18T00:55:36,559 ******************************************************************************** 2025-10-18T00:55:36,560 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-18T00:55:36,561 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-18T00:55:36,562 or your builds will no longer be supported. 2025-10-18T00:55:36,563 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-18T00:55:36,563 ******************************************************************************** 2025-10-18T00:55:36,565 !! 2025-10-18T00:55:36,565 corresp(dist, value, root_dir) 2025-10-18T00:55:36,629 /tmp/pip-build-env-dhgxfplx/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-18T00:55:36,630 !! 2025-10-18T00:55:36,632 ******************************************************************************** 2025-10-18T00:55:36,633 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-18T00:55:36,634 License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+) 2025-10-18T00:55:36,635 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-18T00:55:36,636 ******************************************************************************** 2025-10-18T00:55:36,638 !! 2025-10-18T00:55:36,638 dist._finalize_license_expression() 2025-10-18T00:55:36,639 /tmp/pip-build-env-dhgxfplx/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-18T00:55:36,640 !! 2025-10-18T00:55:36,642 ******************************************************************************** 2025-10-18T00:55:36,642 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-18T00:55:36,644 License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+) 2025-10-18T00:55:36,646 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-18T00:55:36,647 ******************************************************************************** 2025-10-18T00:55:36,648 !! 2025-10-18T00:55:36,648 self._finalize_license_expression() 2025-10-18T00:55:36,649 running bdist_wheel 2025-10-18T00:55:36,661 running build 2025-10-18T00:55:36,661 running build_py 2025-10-18T00:55:36,668 creating build/lib/MDAnalysisTests 2025-10-18T00:55:36,670 copying MDAnalysisTests/util.py -> build/lib/MDAnalysisTests 2025-10-18T00:55:36,674 copying MDAnalysisTests/datafiles.py -> build/lib/MDAnalysisTests 2025-10-18T00:55:36,680 copying MDAnalysisTests/test_api.py -> build/lib/MDAnalysisTests 2025-10-18T00:55:36,684 copying MDAnalysisTests/__init__.py -> build/lib/MDAnalysisTests 2025-10-18T00:55:36,690 copying MDAnalysisTests/dummy.py -> build/lib/MDAnalysisTests 2025-10-18T00:55:36,698 creating build/lib/MDAnalysisTests/visualization 2025-10-18T00:55:36,700 copying MDAnalysisTests/visualization/test_streamlines.py -> build/lib/MDAnalysisTests/visualization 2025-10-18T00:55:36,706 copying MDAnalysisTests/visualization/__init__.py -> build/lib/MDAnalysisTests/visualization 2025-10-18T00:55:36,713 creating build/lib/MDAnalysisTests/formats 2025-10-18T00:55:36,716 copying MDAnalysisTests/formats/__init__.py -> build/lib/MDAnalysisTests/formats 2025-10-18T00:55:36,719 copying MDAnalysisTests/formats/test_libdcd.py -> build/lib/MDAnalysisTests/formats 2025-10-18T00:55:36,724 copying MDAnalysisTests/formats/test_libmdaxdr.py -> build/lib/MDAnalysisTests/formats 2025-10-18T00:55:36,730 creating build/lib/MDAnalysisTests/parallelism 2025-10-18T00:55:36,733 copying MDAnalysisTests/parallelism/test_multiprocessing.py -> build/lib/MDAnalysisTests/parallelism 2025-10-18T00:55:36,740 copying MDAnalysisTests/parallelism/__init__.py -> build/lib/MDAnalysisTests/parallelism 2025-10-18T00:55:36,743 copying MDAnalysisTests/parallelism/test_pickle_transformation.py -> build/lib/MDAnalysisTests/parallelism 2025-10-18T00:55:36,747 creating build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,748 copying MDAnalysisTests/topology/test_altloc.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,750 copying MDAnalysisTests/topology/test_itp.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,755 copying MDAnalysisTests/topology/test_pqr.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,757 copying MDAnalysisTests/topology/test_dlpoly.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,761 copying MDAnalysisTests/topology/test_txyz.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,764 copying MDAnalysisTests/topology/test_tables.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,767 copying MDAnalysisTests/topology/test_pdb.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,772 copying MDAnalysisTests/topology/test_mol2.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,777 copying MDAnalysisTests/topology/test_dms.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,781 copying MDAnalysisTests/topology/test_xyz.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,783 copying MDAnalysisTests/topology/test_hoomdxml.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,785 copying MDAnalysisTests/topology/test_xpdb.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,787 copying MDAnalysisTests/topology/test_fhiaims.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,789 copying MDAnalysisTests/topology/test_gms.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,791 copying MDAnalysisTests/topology/test_gro.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,793 copying MDAnalysisTests/topology/test_mmtf.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,796 copying MDAnalysisTests/topology/test_topology_base.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,798 copying MDAnalysisTests/topology/test_topology_str_types.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,800 copying MDAnalysisTests/topology/__init__.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,802 copying MDAnalysisTests/topology/base.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,806 copying MDAnalysisTests/topology/test_top.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,814 copying MDAnalysisTests/topology/test_crd.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,818 copying MDAnalysisTests/topology/test_psf.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,822 copying MDAnalysisTests/topology/test_gsd.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,825 copying MDAnalysisTests/topology/test_guessers.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,828 copying MDAnalysisTests/topology/test_tprparser.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,831 copying MDAnalysisTests/topology/test_lammpsdata.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,835 copying MDAnalysisTests/topology/test_minimal.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,837 copying MDAnalysisTests/topology/test_pdbqt.py -> build/lib/MDAnalysisTests/topology 2025-10-18T00:55:36,840 creating build/lib/MDAnalysisTests/converters 2025-10-18T00:55:36,841 copying MDAnalysisTests/converters/test_openmm.py -> build/lib/MDAnalysisTests/converters 2025-10-18T00:55:36,844 copying MDAnalysisTests/converters/test_rdkit.py -> build/lib/MDAnalysisTests/converters 2025-10-18T00:55:36,850 copying MDAnalysisTests/converters/test_base.py -> build/lib/MDAnalysisTests/converters 2025-10-18T00:55:36,852 copying MDAnalysisTests/converters/test_parmed_parser.py -> build/lib/MDAnalysisTests/converters 2025-10-18T00:55:36,855 copying MDAnalysisTests/converters/test_rdkit_parser.py -> build/lib/MDAnalysisTests/converters 2025-10-18T00:55:36,859 copying MDAnalysisTests/converters/__init__.py -> build/lib/MDAnalysisTests/converters 2025-10-18T00:55:36,861 copying MDAnalysisTests/converters/test_parmed.py -> build/lib/MDAnalysisTests/converters 2025-10-18T00:55:36,865 copying MDAnalysisTests/converters/test_openmm_parser.py -> build/lib/MDAnalysisTests/converters 2025-10-18T00:55:36,870 creating build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,871 copying MDAnalysisTests/coordinates/test_imd.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,875 copying MDAnalysisTests/coordinates/test_timestep_api.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,880 copying MDAnalysisTests/coordinates/test_pqr.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,883 copying MDAnalysisTests/coordinates/test_dlpoly.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,886 copying MDAnalysisTests/coordinates/test_namdbin.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,888 copying MDAnalysisTests/coordinates/test_txyz.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,890 copying MDAnalysisTests/coordinates/test_pdb.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,893 copying MDAnalysisTests/coordinates/test_trc.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,896 copying MDAnalysisTests/coordinates/test_windows.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,898 copying MDAnalysisTests/coordinates/test_chemfiles.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,901 copying MDAnalysisTests/coordinates/test_mol2.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,904 copying MDAnalysisTests/coordinates/test_dms.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,906 copying MDAnalysisTests/coordinates/test_xyz.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,908 copying MDAnalysisTests/coordinates/test_h5md.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,911 copying MDAnalysisTests/coordinates/test_writer_api.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,913 copying MDAnalysisTests/coordinates/test_tng.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,916 copying MDAnalysisTests/coordinates/test_dcd.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,919 copying MDAnalysisTests/coordinates/test_xdr.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,921 copying MDAnalysisTests/coordinates/test_fhiaims.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,924 copying MDAnalysisTests/coordinates/test_memory.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,926 copying MDAnalysisTests/coordinates/test_gms.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,928 copying MDAnalysisTests/coordinates/test_gro.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,931 copying MDAnalysisTests/coordinates/test_chainreader.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,933 copying MDAnalysisTests/coordinates/test_null.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,935 copying MDAnalysisTests/coordinates/test_tpr.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,938 copying MDAnalysisTests/coordinates/test_mmtf.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,940 copying MDAnalysisTests/coordinates/test_lammps.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,943 copying MDAnalysisTests/coordinates/test_amber_inpcrd.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,945 copying MDAnalysisTests/coordinates/__init__.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,947 copying MDAnalysisTests/coordinates/test_trj.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,949 copying MDAnalysisTests/coordinates/test_reader_api.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,951 copying MDAnalysisTests/coordinates/reference.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,954 copying MDAnalysisTests/coordinates/base.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,957 copying MDAnalysisTests/coordinates/test_netcdf.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,960 copying MDAnalysisTests/coordinates/test_crd.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,962 copying MDAnalysisTests/coordinates/test_gsd.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,964 copying MDAnalysisTests/coordinates/test_trz.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,967 copying MDAnalysisTests/coordinates/test_copying.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,969 copying MDAnalysisTests/coordinates/test_pdbqt.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,972 copying MDAnalysisTests/coordinates/test_writer_registration.py -> build/lib/MDAnalysisTests/coordinates 2025-10-18T00:55:36,975 creating build/lib/MDAnalysisTests/transformations 2025-10-18T00:55:36,976 copying MDAnalysisTests/transformations/test_fit.py -> build/lib/MDAnalysisTests/transformations 2025-10-18T00:55:36,978 copying MDAnalysisTests/transformations/test_translate.py -> build/lib/MDAnalysisTests/transformations 2025-10-18T00:55:36,981 copying MDAnalysisTests/transformations/test_base.py -> build/lib/MDAnalysisTests/transformations 2025-10-18T00:55:36,983 copying MDAnalysisTests/transformations/test_nojump.py -> build/lib/MDAnalysisTests/transformations 2025-10-18T00:55:36,985 copying MDAnalysisTests/transformations/test_boxdimensions.py -> build/lib/MDAnalysisTests/transformations 2025-10-18T00:55:36,988 copying MDAnalysisTests/transformations/__init__.py -> build/lib/MDAnalysisTests/transformations 2025-10-18T00:55:36,990 copying MDAnalysisTests/transformations/test_rotate.py -> build/lib/MDAnalysisTests/transformations 2025-10-18T00:55:36,992 copying MDAnalysisTests/transformations/test_positionaveraging.py -> build/lib/MDAnalysisTests/transformations 2025-10-18T00:55:36,994 copying MDAnalysisTests/transformations/test_wrap.py -> build/lib/MDAnalysisTests/transformations 2025-10-18T00:55:36,997 creating build/lib/MDAnalysisTests/utils 2025-10-18T00:55:36,998 copying MDAnalysisTests/utils/test_failure.py -> build/lib/MDAnalysisTests/utils 2025-10-18T00:55:37,000 copying MDAnalysisTests/utils/test_transformations.py -> build/lib/MDAnalysisTests/utils 2025-10-18T00:55:37,003 copying MDAnalysisTests/utils/test_selections.py -> build/lib/MDAnalysisTests/utils 2025-10-18T00:55:37,005 copying MDAnalysisTests/utils/test_imports.py -> build/lib/MDAnalysisTests/utils 2025-10-18T00:55:37,007 copying MDAnalysisTests/utils/test_authors.py -> build/lib/MDAnalysisTests/utils 2025-10-18T00:55:37,009 copying MDAnalysisTests/utils/test_meta.py -> build/lib/MDAnalysisTests/utils 2025-10-18T00:55:37,011 copying MDAnalysisTests/utils/test_duecredit.py -> build/lib/MDAnalysisTests/utils 2025-10-18T00:55:37,013 copying MDAnalysisTests/utils/test_qcprot.py -> build/lib/MDAnalysisTests/utils 2025-10-18T00:55:37,015 copying MDAnalysisTests/utils/test_modelling.py -> build/lib/MDAnalysisTests/utils 2025-10-18T00:55:37,018 copying MDAnalysisTests/utils/test_pickleio.py -> build/lib/MDAnalysisTests/utils 2025-10-18T00:55:37,020 copying MDAnalysisTests/utils/test_streamio.py -> build/lib/MDAnalysisTests/utils 2025-10-18T00:55:37,023 copying MDAnalysisTests/utils/test_log.py -> build/lib/MDAnalysisTests/utils 2025-10-18T00:55:37,025 copying MDAnalysisTests/utils/__init__.py -> build/lib/MDAnalysisTests/utils 2025-10-18T00:55:37,026 copying MDAnalysisTests/utils/test_datafiles.py -> build/lib/MDAnalysisTests/utils 2025-10-18T00:55:37,028 copying MDAnalysisTests/utils/test_persistence.py -> build/lib/MDAnalysisTests/utils 2025-10-18T00:55:37,030 copying MDAnalysisTests/utils/test_units.py -> build/lib/MDAnalysisTests/utils 2025-10-18T00:55:37,033 creating build/lib/MDAnalysisTests/lib 2025-10-18T00:55:37,034 copying MDAnalysisTests/lib/test_util.py -> build/lib/MDAnalysisTests/lib 2025-10-18T00:55:37,038 copying MDAnalysisTests/lib/test_pkdtree.py -> build/lib/MDAnalysisTests/lib 2025-10-18T00:55:37,040 copying MDAnalysisTests/lib/test_qcprot.py -> build/lib/MDAnalysisTests/lib 2025-10-18T00:55:37,042 copying MDAnalysisTests/lib/test_augment.py -> build/lib/MDAnalysisTests/lib 2025-10-18T00:55:37,044 copying MDAnalysisTests/lib/test_distances.py -> build/lib/MDAnalysisTests/lib 2025-10-18T00:55:37,048 copying MDAnalysisTests/lib/test_nsgrid.py -> build/lib/MDAnalysisTests/lib 2025-10-18T00:55:37,050 copying MDAnalysisTests/lib/test_neighborsearch.py -> build/lib/MDAnalysisTests/lib 2025-10-18T00:55:37,052 copying MDAnalysisTests/lib/test_mdamath.py -> build/lib/MDAnalysisTests/lib 2025-10-18T00:55:37,055 copying MDAnalysisTests/lib/test_log.py -> build/lib/MDAnalysisTests/lib 2025-10-18T00:55:37,057 copying MDAnalysisTests/lib/__init__.py -> build/lib/MDAnalysisTests/lib 2025-10-18T00:55:37,059 copying MDAnalysisTests/lib/test_cutil.py -> build/lib/MDAnalysisTests/lib 2025-10-18T00:55:37,061 creating build/lib/MDAnalysisTests/auxiliary 2025-10-18T00:55:37,062 copying MDAnalysisTests/auxiliary/test_core.py -> build/lib/MDAnalysisTests/auxiliary 2025-10-18T00:55:37,064 copying MDAnalysisTests/auxiliary/test_edr.py -> build/lib/MDAnalysisTests/auxiliary 2025-10-18T00:55:37,067 copying MDAnalysisTests/auxiliary/__init__.py -> build/lib/MDAnalysisTests/auxiliary 2025-10-18T00:55:37,068 copying MDAnalysisTests/auxiliary/base.py -> build/lib/MDAnalysisTests/auxiliary 2025-10-18T00:55:37,071 copying MDAnalysisTests/auxiliary/test_xvg.py -> build/lib/MDAnalysisTests/auxiliary 2025-10-18T00:55:37,074 creating build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,076 copying MDAnalysisTests/core/test_atomgroup.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,079 copying MDAnalysisTests/core/test_group_traj_access.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,081 copying MDAnalysisTests/core/test_unwrap.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,084 copying MDAnalysisTests/core/test_updating_atomgroup.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,086 copying MDAnalysisTests/core/test_topologyattrs.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,089 copying MDAnalysisTests/core/test_topologyobjects.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,091 copying MDAnalysisTests/core/test_residuegroup.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,094 copying MDAnalysisTests/core/test_index_dtype.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,096 copying MDAnalysisTests/core/test_topology.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,098 copying MDAnalysisTests/core/util.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,101 copying MDAnalysisTests/core/test_atom.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,103 copying MDAnalysisTests/core/test_atomselections.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,106 copying MDAnalysisTests/core/test_residue.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,108 copying MDAnalysisTests/core/test_accessors.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,110 copying MDAnalysisTests/core/test_accumulate.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,112 copying MDAnalysisTests/core/test_universe.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,115 copying MDAnalysisTests/core/test_segmentgroup.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,117 copying MDAnalysisTests/core/__init__.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,119 copying MDAnalysisTests/core/test_segment.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,120 copying MDAnalysisTests/core/test_wrap.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,123 copying MDAnalysisTests/core/test_fragments.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,125 copying MDAnalysisTests/core/test_copying.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,128 copying MDAnalysisTests/core/test_requires.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,130 copying MDAnalysisTests/core/test_groups.py -> build/lib/MDAnalysisTests/core 2025-10-18T00:55:37,133 creating build/lib/MDAnalysisTests/import 2025-10-18T00:55:37,134 copying MDAnalysisTests/import/__init__.py -> build/lib/MDAnalysisTests/import 2025-10-18T00:55:37,137 copying MDAnalysisTests/import/test_import.py -> build/lib/MDAnalysisTests/import 2025-10-18T00:55:37,138 copying MDAnalysisTests/import/fork_called.py -> build/lib/MDAnalysisTests/import 2025-10-18T00:55:37,141 creating build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,142 copying MDAnalysisTests/analysis/test_waterdynamics.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,144 copying MDAnalysisTests/analysis/test_msd.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,148 copying MDAnalysisTests/analysis/test_helix_analysis.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,151 copying MDAnalysisTests/analysis/test_rms.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,153 copying MDAnalysisTests/analysis/test_rdf_s.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,155 copying MDAnalysisTests/analysis/test_atomicdistances.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,158 copying MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,160 copying MDAnalysisTests/analysis/test_pca.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,163 copying MDAnalysisTests/analysis/test_leaflet.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,165 copying MDAnalysisTests/analysis/test_wbridge.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,168 copying MDAnalysisTests/analysis/test_dielectric.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,170 copying MDAnalysisTests/analysis/test_data.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,172 copying MDAnalysisTests/analysis/test_base.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,174 copying MDAnalysisTests/analysis/test_lineardensity.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,177 copying MDAnalysisTests/analysis/test_distances.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,179 copying MDAnalysisTests/analysis/test_nucleicacids.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,181 copying MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,183 copying MDAnalysisTests/analysis/test_align.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,186 copying MDAnalysisTests/analysis/test_density.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,189 copying MDAnalysisTests/analysis/test_backends.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,191 copying MDAnalysisTests/analysis/test_contacts.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,193 copying MDAnalysisTests/analysis/test_diffusionmap.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,196 copying MDAnalysisTests/analysis/test_encore.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,199 copying MDAnalysisTests/analysis/test_nuclinfo.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,201 copying MDAnalysisTests/analysis/test_psa.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,203 copying MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,205 copying MDAnalysisTests/analysis/test_bat.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,208 copying MDAnalysisTests/analysis/__init__.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,210 copying MDAnalysisTests/analysis/test_persistencelength.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,213 copying MDAnalysisTests/analysis/conftest.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,215 copying MDAnalysisTests/analysis/test_dssp.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,217 copying MDAnalysisTests/analysis/test_rdf.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,219 copying MDAnalysisTests/analysis/test_hole2.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,221 copying MDAnalysisTests/analysis/test_results.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,224 copying MDAnalysisTests/analysis/test_gnm.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,226 copying MDAnalysisTests/analysis/test_dihedrals.py -> build/lib/MDAnalysisTests/analysis 2025-10-18T00:55:37,229 creating build/lib/MDAnalysisTests/data 2025-10-18T00:55:37,230 copying MDAnalysisTests/data/__init__.py -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:37,233 creating build/lib/MDAnalysisTests/data/gms 2025-10-18T00:55:37,234 copying MDAnalysisTests/data/gms/__init__.py -> build/lib/MDAnalysisTests/data/gms 2025-10-18T00:55:37,236 creating build/lib/MDAnalysisTests/data/capping 2025-10-18T00:55:37,237 copying MDAnalysisTests/data/capping/__init__.py -> build/lib/MDAnalysisTests/data/capping 2025-10-18T00:55:37,239 creating build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:37,240 copying MDAnalysisTests/data/lammps/__init__.py -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:37,242 creating build/lib/MDAnalysisTests/data/mol2 2025-10-18T00:55:37,243 copying MDAnalysisTests/data/mol2/__init__.py -> build/lib/MDAnalysisTests/data/mol2 2025-10-18T00:55:37,245 creating build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:37,246 copying MDAnalysisTests/data/coordinates/create_data.py -> build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:37,248 copying MDAnalysisTests/data/coordinates/create_h5md_data.py -> build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:37,250 copying MDAnalysisTests/data/coordinates/__init__.py -> build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:37,252 creating build/lib/MDAnalysisTests/data/merge 2025-10-18T00:55:37,253 copying MDAnalysisTests/data/merge/__init__.py -> build/lib/MDAnalysisTests/data/merge 2025-10-18T00:55:37,255 creating build/lib/MDAnalysisTests/data/contacts 2025-10-18T00:55:37,256 copying MDAnalysisTests/data/contacts/__init__.py -> build/lib/MDAnalysisTests/data/contacts 2025-10-18T00:55:37,258 creating build/lib/MDAnalysisTests/data/dlpoly 2025-10-18T00:55:37,259 copying MDAnalysisTests/data/dlpoly/__init__.py -> build/lib/MDAnalysisTests/data/dlpoly 2025-10-18T00:55:37,261 creating build/lib/MDAnalysisTests/data/windows 2025-10-18T00:55:37,262 copying MDAnalysisTests/data/windows/__init__.py -> build/lib/MDAnalysisTests/data/windows 2025-10-18T00:55:37,264 creating build/lib/MDAnalysisTests/data/gromos11 2025-10-18T00:55:37,265 copying MDAnalysisTests/data/gromos11/__init__.py -> build/lib/MDAnalysisTests/data/gromos11 2025-10-18T00:55:37,267 creating build/lib/MDAnalysisTests/data/gromacs 2025-10-18T00:55:37,268 copying MDAnalysisTests/data/gromacs/__init__.py -> build/lib/MDAnalysisTests/data/gromacs 2025-10-18T00:55:37,270 creating build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:37,271 copying MDAnalysisTests/data/tprs/__init__.py -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:37,273 creating build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:37,274 copying MDAnalysisTests/data/Amber/__init__.py -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:37,276 creating build/lib/MDAnalysisTests/data/analysis 2025-10-18T00:55:37,277 copying MDAnalysisTests/data/analysis/__init__.py -> build/lib/MDAnalysisTests/data/analysis 2025-10-18T00:55:37,279 creating build/lib/MDAnalysisTests/data/merge/2zmm 2025-10-18T00:55:37,280 copying MDAnalysisTests/data/merge/2zmm/__init__.py -> build/lib/MDAnalysisTests/data/merge/2zmm 2025-10-18T00:55:37,282 creating build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:37,283 copying MDAnalysisTests/data/tprs/all_bonded/__init__.py -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:37,285 creating build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:37,286 copying MDAnalysisTests/data/tprs/virtual_sites/__init__.py -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:37,288 running egg_info 2025-10-18T00:55:37,300 writing MDAnalysisTests.egg-info/PKG-INFO 2025-10-18T00:55:37,305 writing dependency_links to MDAnalysisTests.egg-info/dependency_links.txt 2025-10-18T00:55:37,307 writing requirements to MDAnalysisTests.egg-info/requires.txt 2025-10-18T00:55:37,308 writing top-level names to MDAnalysisTests.egg-info/top_level.txt 2025-10-18T00:55:37,441 reading manifest file 'MDAnalysisTests.egg-info/SOURCES.txt' 2025-10-18T00:55:37,476 reading manifest template 'MANIFEST.in' 2025-10-18T00:55:37,478 warning: no files found matching 'TODO' 2025-10-18T00:55:37,479 warning: no files found matching 'SUMMARY.txt' 2025-10-18T00:55:37,521 warning: no previously-included files matching '*~' found anywhere in distribution 2025-10-18T00:55:37,525 warning: no previously-included files matching '*.pkl' found anywhere in distribution 2025-10-18T00:55:37,526 adding license file 'LICENSE' 2025-10-18T00:55:37,526 adding license file 'AUTHORS' 2025-10-18T00:55:37,562 writing manifest file 'MDAnalysisTests.egg-info/SOURCES.txt' 2025-10-18T00:55:37,569 /tmp/pip-build-env-dhgxfplx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'MDAnalysisTests.data.analysis.msd' is absent from the `packages` configuration. 2025-10-18T00:55:37,570 !! 2025-10-18T00:55:37,571 ******************************************************************************** 2025-10-18T00:55:37,572 ############################ 2025-10-18T00:55:37,573 # Package would be ignored # 2025-10-18T00:55:37,573 ############################ 2025-10-18T00:55:37,574 Python recognizes 'MDAnalysisTests.data.analysis.msd' as an importable package[^1], 2025-10-18T00:55:37,575 but it is absent from setuptools' `packages` configuration. 2025-10-18T00:55:37,576 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-18T00:55:37,576 package, please make sure that 'MDAnalysisTests.data.analysis.msd' is explicitly added 2025-10-18T00:55:37,577 to the `packages` configuration field. 2025-10-18T00:55:37,577 Alternatively, you can also rely on setuptools' discovery methods 2025-10-18T00:55:37,578 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-18T00:55:37,578 instead of `find_packages(...)`/`find:`). 2025-10-18T00:55:37,579 You can read more about "package discovery" on setuptools documentation page: 2025-10-18T00:55:37,580 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-18T00:55:37,581 If you don't want 'MDAnalysisTests.data.analysis.msd' to be distributed and are 2025-10-18T00:55:37,582 already explicitly excluding 'MDAnalysisTests.data.analysis.msd' via 2025-10-18T00:55:37,582 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-18T00:55:37,582 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-18T00:55:37,583 combination with a more fine grained `package-data` configuration. 2025-10-18T00:55:37,584 You can read more about "package data files" on setuptools documentation page: 2025-10-18T00:55:37,585 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-18T00:55:37,587 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-18T00:55:37,587 even if it does not contain any `.py` files. 2025-10-18T00:55:37,588 On the other hand, currently there is no concept of package data 2025-10-18T00:55:37,588 directory, all directories are treated like packages. 2025-10-18T00:55:37,589 ******************************************************************************** 2025-10-18T00:55:37,590 !! 2025-10-18T00:55:37,590 check.warn(importable) 2025-10-18T00:55:37,591 /tmp/pip-build-env-dhgxfplx/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'MDAnalysisTests.data.dssp' is absent from the `packages` configuration. 2025-10-18T00:55:37,592 !! 2025-10-18T00:55:37,593 ******************************************************************************** 2025-10-18T00:55:37,593 ############################ 2025-10-18T00:55:37,594 # Package would be ignored # 2025-10-18T00:55:37,594 ############################ 2025-10-18T00:55:37,595 Python recognizes 'MDAnalysisTests.data.dssp' as an importable package[^1], 2025-10-18T00:55:37,595 but it is absent from setuptools' `packages` configuration. 2025-10-18T00:55:37,597 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-18T00:55:37,597 package, please make sure that 'MDAnalysisTests.data.dssp' is explicitly added 2025-10-18T00:55:37,598 to the `packages` configuration field. 2025-10-18T00:55:37,599 Alternatively, you can also rely on setuptools' discovery methods 2025-10-18T00:55:37,599 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-18T00:55:37,600 instead of `find_packages(...)`/`find:`). 2025-10-18T00:55:37,601 You can read more about "package discovery" on setuptools documentation page: 2025-10-18T00:55:37,602 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-18T00:55:37,603 If you don't want 'MDAnalysisTests.data.dssp' to be distributed and are 2025-10-18T00:55:37,604 already explicitly excluding 'MDAnalysisTests.data.dssp' via 2025-10-18T00:55:37,605 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-18T00:55:37,605 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-18T00:55:37,606 combination with a more fine grained `package-data` configuration. 2025-10-18T00:55:37,606 You can read more about "package data files" on setuptools documentation page: 2025-10-18T00:55:37,607 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-18T00:55:37,609 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-18T00:55:37,609 even if it does not contain any `.py` files. 2025-10-18T00:55:37,609 On the other hand, currently there is no concept of package data 2025-10-18T00:55:37,610 directory, all directories are treated like packages. 2025-10-18T00:55:37,610 ******************************************************************************** 2025-10-18T00:55:37,611 !! 2025-10-18T00:55:37,612 check.warn(importable) 2025-10-18T00:55:37,689 copying MDAnalysisTests/data/2r9r-1b.psf -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:37,706 copying MDAnalysisTests/data/adk_notop.psf -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:37,714 copying MDAnalysisTests/data/adk_notop_BAD.psf -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:37,721 copying MDAnalysisTests/data/adk_closed_NAMD.psf -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:37,751 copying MDAnalysisTests/data/namd_cgenff.psf -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:37,754 copying MDAnalysisTests/data/parmed_ala3.psf -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:37,757 copying MDAnalysisTests/data/trz_psf.psf -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:37,768 copying MDAnalysisTests/data/nosegid.psf -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:37,770 copying MDAnalysisTests/data/adk.psf -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:37,804 copying MDAnalysisTests/data/tip125_tric_C36.psf -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:37,808 copying MDAnalysisTests/data/1a2c_ins_code.psf -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:37,813 copying MDAnalysisTests/data/watdyn.psf -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:37,815 copying MDAnalysisTests/data/SiN_tric_namd.psf -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:37,845 copying MDAnalysisTests/data/SiN_tric_namd.dcd -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:37,849 copying MDAnalysisTests/data/empty.dcd -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:37,850 copying MDAnalysisTests/data/watdyn.dcd -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:37,853 copying MDAnalysisTests/data/adk_dims2.dcd -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,044 copying MDAnalysisTests/data/tip125_tric_C36.dcd -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,048 copying MDAnalysisTests/data/adk_dims.dcd -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,232 copying MDAnalysisTests/data/adk_gbis_tmd-fast1_NAMD.dcd -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,292 copying MDAnalysisTests/data/SINGLECONECT.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,295 copying MDAnalysisTests/data/model_then_cryst.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,297 copying MDAnalysisTests/data/conect_parsing.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,299 copying MDAnalysisTests/data/RANDOM_WALK_TOPO.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,302 copying MDAnalysisTests/data/sameresid_diffresname.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,304 copying MDAnalysisTests/data/cryst_then_model.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,306 copying MDAnalysisTests/data/4E43.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,313 copying MDAnalysisTests/data/conect_error.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,315 copying MDAnalysisTests/data/varying_occ_tmp.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,317 copying MDAnalysisTests/data/pdbqt_querypdb.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,320 copying MDAnalysisTests/data/cobrotoxin_dry_neutral_0.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,324 copying MDAnalysisTests/data/5a7u.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,327 copying MDAnalysisTests/data/align.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,329 copying MDAnalysisTests/data/1grm_single.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,332 copying MDAnalysisTests/data/adk_closed.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,338 copying MDAnalysisTests/data/charges.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,340 copying MDAnalysisTests/data/A6PA6_alpha.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,343 copying MDAnalysisTests/data/elements.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,346 copying MDAnalysisTests/data/adk_open_10res.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,348 copying MDAnalysisTests/data/namd_cgenff.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,351 copying MDAnalysisTests/data/nmr_neopetrosiamide.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,365 copying MDAnalysisTests/data/adk_open.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,372 copying MDAnalysisTests/data/5digitResid.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,374 copying MDAnalysisTests/data/unordered_res.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,377 copying MDAnalysisTests/data/CONECT2TER.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,380 copying MDAnalysisTests/data/xl_serial.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,382 copying MDAnalysisTests/data/1hvr.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,387 copying MDAnalysisTests/data/cobrotoxin.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,413 copying MDAnalysisTests/data/water_methane_acetic-acid_ammonia.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,416 copying MDAnalysisTests/data/nucl_res.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,419 copying MDAnalysisTests/data/adk_oplsaa.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,469 copying MDAnalysisTests/data/incomplete.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,471 copying MDAnalysisTests/data/tprs/2lyz_gmx_2024.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,482 copying MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,496 copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,506 copying MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,516 copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,527 copying MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,539 copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,549 copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,559 copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,571 copying MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,582 copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,592 copying MDAnalysisTests/data/tprs/2lyz_gmx_2025_0.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,603 copying MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,617 copying MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,631 copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,641 copying MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,678 copying MDAnalysisTests/data/tprs/ala_nnpot_gmx_2025_0.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,681 copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,692 copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,703 copying MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,715 copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,727 copying MDAnalysisTests/data/tprs/drew_gmx_4.5.5.double.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,749 copying MDAnalysisTests/data/tprs/2lyz_gmx_2020-beta2.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,781 copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,791 copying MDAnalysisTests/data/tprs/2lyz_gmx_2024_4.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,802 copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,812 copying MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,843 copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,853 copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,865 copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,876 copying MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,887 copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,898 copying MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,909 copying MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr -> build/lib/MDAnalysisTests/data/tprs 2025-10-18T00:55:38,919 copying MDAnalysisTests/data/tprs/all_bonded/dummy.gro -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:38,922 copying MDAnalysisTests/data/tprs/all_bonded/dummy_3.3.4.top -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:38,925 copying MDAnalysisTests/data/tprs/all_bonded/dummy.top -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:38,927 copying MDAnalysisTests/data/tprs/all_bonded/dummy_2018.mdp -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:38,930 copying MDAnalysisTests/data/tprs/all_bonded/dummy.mdp -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:38,932 copying MDAnalysisTests/data/tprs/virtual_sites/dummy_2020.mdp -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:38,934 copying MDAnalysisTests/data/tprs/virtual_sites/dummy_2018.mdp -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:38,937 copying MDAnalysisTests/data/tprs/virtual_sites/dummy_4.0.7.mdp -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:38,939 copying MDAnalysisTests/data/tprs/virtual_sites/dummy_4.0.7.top -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:38,942 copying MDAnalysisTests/data/tprs/virtual_sites/dummy_2021.top -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:38,945 copying MDAnalysisTests/data/tprs/virtual_sites/dummy.top -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:38,948 copying MDAnalysisTests/data/tprs/virtual_sites/dummy.gro -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:38,951 copying MDAnalysisTests/data/tprs/virtual_sites/dummy_2021.gro -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:38,953 copying MDAnalysisTests/data/cobrotoxin.tpr -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,967 copying MDAnalysisTests/data/aux_edr.tpr -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:38,989 copying MDAnalysisTests/data/adk_oplsaa.tpr -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,026 copying MDAnalysisTests/data/cobrotoxin_2024_4.tpr -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,040 copying MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:39,042 copying MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:39,045 copying MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:39,047 copying MDAnalysisTests/data/tprs/all_bonded/dummy_2024_4.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:39,050 copying MDAnalysisTests/data/tprs/all_bonded/dummy_3.3.4.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:39,053 copying MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:39,056 copying MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:39,059 copying MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:39,061 copying MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:39,064 copying MDAnalysisTests/data/tprs/all_bonded/dummy_2020-beta2.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:39,067 copying MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:39,069 copying MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:39,072 copying MDAnalysisTests/data/tprs/all_bonded/dummy_2025_0.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:39,075 copying MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:39,078 copying MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:39,080 copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2025_0.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:39,083 copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:39,086 copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:39,088 copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:39,091 copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024_4.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:39,093 copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:39,096 copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:39,099 copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:39,102 copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:39,105 copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:39,108 copying MDAnalysisTests/data/two_water_gro_nonames.gro -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,110 copying MDAnalysisTests/data/residwrap.gro -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,113 copying MDAnalysisTests/data/two_water_gro.gro -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,115 copying MDAnalysisTests/data/residwrap_0base.gro -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,117 copying MDAnalysisTests/data/martini_dppc_chol_bilayer.gro -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,124 copying MDAnalysisTests/data/two_water_gro_widebox.gro -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,127 copying MDAnalysisTests/data/two_water_gro_multiframe.gro -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,129 copying MDAnalysisTests/data/empty_atom.gro -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,132 copying MDAnalysisTests/data/missing_atomname.gro -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,134 copying MDAnalysisTests/data/plength.gro -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,155 copying MDAnalysisTests/data/huge_box.gro -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,158 copying MDAnalysisTests/data/make_whole.gro -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,161 copying MDAnalysisTests/data/grovels.gro -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,165 copying MDAnalysisTests/data/sameresid_diffresname.gro -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,168 copying MDAnalysisTests/data/adk_oplsaa.gro -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,216 copying MDAnalysisTests/data/sample_velocity_file.gro -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,218 copying MDAnalysisTests/data/dppc_vesicle_hg.gro -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,222 copying MDAnalysisTests/data/xyz_random_walk.xtc -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,227 copying MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,229 copying MDAnalysisTests/data/cobrotoxin.xtc -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,237 copying MDAnalysisTests/data/aux_edr.xtc -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,251 copying MDAnalysisTests/data/adk_oplsaa.xtc -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,289 copying MDAnalysisTests/data/cobrotoxin.trr -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,333 copying MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,336 copying MDAnalysisTests/data/adk_oplsaa.trr -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,504 copying MDAnalysisTests/data/surface.trr -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,506 copying MDAnalysisTests/data/mol2_comments_header_bat.npy -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,508 copying MDAnalysisTests/data/legacy_DCD_adk_coords.npy -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,512 copying MDAnalysisTests/data/legacy_DCD_c36_coords.npy -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,515 copying MDAnalysisTests/data/adk_oplsaa_janin.npy -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,518 copying MDAnalysisTests/data/adk_oplsaa_CA_rmsf.npy -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,521 copying MDAnalysisTests/data/adk_oplsaa_LYS_janin.npy -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,523 copying MDAnalysisTests/data/adk_oplsaa_dihedral_list.npy -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,525 copying MDAnalysisTests/data/adk_oplsaa_GLY_rama.npy -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,528 copying MDAnalysisTests/data/adk_oplsaa_rama.npy -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,531 copying MDAnalysisTests/data/adk_oplsaa_dihedral.npy -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,534 copying MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,537 copying MDAnalysisTests/data/adk_open.crd -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,543 copying MDAnalysisTests/data/five.xyz -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,546 copying MDAnalysisTests/data/mini.xyz -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,548 copying MDAnalysisTests/data/2r9r-1b.xyz -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,556 copying MDAnalysisTests/data/Amber/ache.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,560 copying MDAnalysisTests/data/Amber/ache_chainid.prmtop.bz2 -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,563 copying MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2 -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,567 copying MDAnalysisTests/data/Amber/capped-ala.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,575 copying MDAnalysisTests/data/Amber/ala.ff19SB.OPC.parm7.bz2 -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,578 copying MDAnalysisTests/data/Amber/ache_chainid.error5.prmtop.bz2 -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,581 copying MDAnalysisTests/data/Amber/anti_md1.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,599 copying MDAnalysisTests/data/Amber/bala.prmtop -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,609 copying MDAnalysisTests/data/Amber/capped-ala.prmtop -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,623 copying MDAnalysisTests/data/Amber/chitosan.prmtop -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,628 copying MDAnalysisTests/data/Amber/parmed_fad.prmtop -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,633 copying MDAnalysisTests/data/Amber/cpptraj_traj.prmtop -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,636 copying MDAnalysisTests/data/Amber/ache.prmtop -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,640 copying MDAnalysisTests/data/Amber/anti.top -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,667 copying MDAnalysisTests/data/Amber/posfor.top -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,673 copying MDAnalysisTests/data/Amber/parmed_ala2_solv.parm7 -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,683 copying MDAnalysisTests/data/Amber/ace_mbondi3.error1.parm7 -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,686 copying MDAnalysisTests/data/Amber/ace_mbondi3.error3.parm7 -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,688 copying MDAnalysisTests/data/Amber/ace_mbondi3.error2.parm7 -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,690 copying MDAnalysisTests/data/Amber/ace_tip3p.parm7 -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,696 copying MDAnalysisTests/data/Amber/ace_mbondi3.error4.parm7 -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,699 copying MDAnalysisTests/data/Amber/ace_mbondi3.parm7 -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,701 copying MDAnalysisTests/data/Amber/ace_mbondi3.negative.parm7 -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,704 copying MDAnalysisTests/data/Amber/parmed_ala2_solv.rst7 -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,708 copying MDAnalysisTests/data/Amber/bala.trj -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,739 copying MDAnalysisTests/data/Amber/ache.mdcrd -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,743 copying MDAnalysisTests/data/Amber/posfor.ncdf -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,746 copying MDAnalysisTests/data/Amber/bala.ncdf -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,763 copying MDAnalysisTests/data/Amber/ace_tip3p.nc -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,774 copying MDAnalysisTests/data/Amber/ace_mbondi3.nc -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,776 copying MDAnalysisTests/data/Amber/cpptraj_traj.nc -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,779 copying MDAnalysisTests/data/Amber/tz2.truncoct.nc -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,884 copying MDAnalysisTests/data/Amber/test.inpcrd -> build/lib/MDAnalysisTests/data/Amber 2025-10-18T00:55:39,886 copying MDAnalysisTests/data/gromos11/gromos11_truncOcta_vac.trc.gz -> build/lib/MDAnalysisTests/data/gromos11 2025-10-18T00:55:39,888 copying MDAnalysisTests/data/gromos11/gromos11_traj_solv.pdb.gz -> build/lib/MDAnalysisTests/data/gromos11 2025-10-18T00:55:39,891 copying MDAnalysisTests/data/gromos11/gromos11_traj_vac_1_whitespace.trc.gz -> build/lib/MDAnalysisTests/data/gromos11 2025-10-18T00:55:39,893 copying MDAnalysisTests/data/gromos11/gromos11_triclinic_solv.trc.gz -> build/lib/MDAnalysisTests/data/gromos11 2025-10-18T00:55:39,897 copying MDAnalysisTests/data/gromos11/gromos11_traj_solv.trc.gz -> build/lib/MDAnalysisTests/data/gromos11 2025-10-18T00:55:39,901 copying MDAnalysisTests/data/gromos11/gromos11_traj_vac_2.trc.gz -> build/lib/MDAnalysisTests/data/gromos11 2025-10-18T00:55:39,904 copying MDAnalysisTests/data/gromos11/gromos11_traj_vac_1_missing_pos.trc.gz -> build/lib/MDAnalysisTests/data/gromos11 2025-10-18T00:55:39,906 copying MDAnalysisTests/data/gromos11/gromos11_genbox_origin.trc.gz -> build/lib/MDAnalysisTests/data/gromos11 2025-10-18T00:55:39,908 copying MDAnalysisTests/data/gromos11/gromos11_cluster_vac.trj.gz -> build/lib/MDAnalysisTests/data/gromos11 2025-10-18T00:55:39,911 copying MDAnalysisTests/data/gromos11/gromos11_traj_vac_1.trc.gz -> build/lib/MDAnalysisTests/data/gromos11 2025-10-18T00:55:39,913 copying MDAnalysisTests/data/gromos11/gromos11_genbox_euler.trc.gz -> build/lib/MDAnalysisTests/data/gromos11 2025-10-18T00:55:39,916 copying MDAnalysisTests/data/gromos11/gromos11_traj_vac.pdb.gz -> build/lib/MDAnalysisTests/data/gromos11 2025-10-18T00:55:39,918 copying MDAnalysisTests/data/gromos11/gromos11_traj_vac_1_extra_pos.trc.gz -> build/lib/MDAnalysisTests/data/gromos11 2025-10-18T00:55:39,920 copying MDAnalysisTests/data/gromos11/gromos11_empty.trc -> build/lib/MDAnalysisTests/data/gromos11 2025-10-18T00:55:39,923 copying MDAnalysisTests/data/1A2C.pqr -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,931 copying MDAnalysisTests/data/adk_open.pqr -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,937 copying MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,943 copying MDAnalysisTests/data/C12x64.xml.bz2 -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,946 copying MDAnalysisTests/data/surface.pdb.bz2 -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,948 copying MDAnalysisTests/data/6msm.pdb.bz2 -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,953 copying MDAnalysisTests/data/2r9r-1b.xyz.bz2 -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,957 copying MDAnalysisTests/data/model_then_cryst.pdb.bz2 -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,960 copying MDAnalysisTests/data/bigbox.gro.bz2 -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,980 copying MDAnalysisTests/data/cobrotoxin_protein_forces.xvg.bz2 -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,984 copying MDAnalysisTests/data/cryst_then_model.pdb.bz2 -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,986 copying MDAnalysisTests/data/tyrosol.pdbqt.bz2 -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,989 copying MDAnalysisTests/data/1grm_elNemo_mode7.pdb.bz2 -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,992 copying MDAnalysisTests/data/1a28.pdb.gz -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,996 copying MDAnalysisTests/data/1osm.pdb.gz -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:39,999 copying MDAnalysisTests/data/5KIH.mmtf.gz -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,002 copying MDAnalysisTests/data/argon_npt_compressed.gro.gz -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,005 copying MDAnalysisTests/data/chainIDnewres.pdb.gz -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,007 copying MDAnalysisTests/data/chainIDrepeat.pdb.gz -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,010 copying MDAnalysisTests/data/19hc.pdb.gz -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,015 copying MDAnalysisTests/data/model_then_cryst.pdb.gz -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,018 copying MDAnalysisTests/data/6QYR.mmtf.gz -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,020 copying MDAnalysisTests/data/fullerene.pdb.gz -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,022 copying MDAnalysisTests/data/cryst_then_model.pdb.gz -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,025 copying MDAnalysisTests/data/testENT.ent -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,027 copying MDAnalysisTests/data/test.fasta -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,029 copying MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8.dat -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,032 copying MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8_frames10to79.dat -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,036 copying MDAnalysisTests/data/adk_closed_domains.dms -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,046 copying MDAnalysisTests/data/adk_closed.dms -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,058 copying MDAnalysisTests/data/adk_closed_no_segid.dms -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,069 copying MDAnalysisTests/data/merge/2zmm/water.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm 2025-10-18T00:55:40,073 copying MDAnalysisTests/data/merge/2zmm/protein.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm 2025-10-18T00:55:40,081 copying MDAnalysisTests/data/merge/2zmm/ligand.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm 2025-10-18T00:55:40,084 copying MDAnalysisTests/data/trzfile.trz -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,113 copying MDAnalysisTests/data/mol2/Molecule.mol2 -> build/lib/MDAnalysisTests/data/mol2 2025-10-18T00:55:40,116 copying MDAnalysisTests/data/mol2/sodium_ion.mol2 -> build/lib/MDAnalysisTests/data/mol2 2025-10-18T00:55:40,119 copying MDAnalysisTests/data/mol2/BrokenMolecule.mol2 -> build/lib/MDAnalysisTests/data/mol2 2025-10-18T00:55:40,122 copying MDAnalysisTests/data/mol2/Molecule_comments_header.mol2 -> build/lib/MDAnalysisTests/data/mol2 2025-10-18T00:55:40,125 copying MDAnalysisTests/data/mol2/Molecules.mol2 -> build/lib/MDAnalysisTests/data/mol2 2025-10-18T00:55:40,147 copying MDAnalysisTests/data/mol2/zinc_856218.mol2 -> build/lib/MDAnalysisTests/data/mol2 2025-10-18T00:55:40,150 copying MDAnalysisTests/data/mol2/Ligand.mol2 -> build/lib/MDAnalysisTests/data/mol2 2025-10-18T00:55:40,155 copying MDAnalysisTests/data/contacts/villin_folded.gro.bz2 -> build/lib/MDAnalysisTests/data/contacts 2025-10-18T00:55:40,161 copying MDAnalysisTests/data/contacts/villin_unfolded.gro.bz2 -> build/lib/MDAnalysisTests/data/contacts 2025-10-18T00:55:40,167 copying MDAnalysisTests/data/contacts/2F4K_qlist5_remap.dat -> build/lib/MDAnalysisTests/data/contacts 2025-10-18T00:55:40,170 copying MDAnalysisTests/data/capping/aaqaa.gro -> build/lib/MDAnalysisTests/data/capping 2025-10-18T00:55:40,174 copying MDAnalysisTests/data/capping/nma.pdb -> build/lib/MDAnalysisTests/data/capping 2025-10-18T00:55:40,178 copying MDAnalysisTests/data/capping/maestro_aaqaa_capped.pdb -> build/lib/MDAnalysisTests/data/capping 2025-10-18T00:55:40,182 copying MDAnalysisTests/data/capping/ace.pdb -> build/lib/MDAnalysisTests/data/capping 2025-10-18T00:55:40,185 copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.data.bz2 -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,195 copying MDAnalysisTests/data/lammps/a_lot_of_bond_types.data -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,199 copying MDAnalysisTests/data/lammps/mini.data -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,202 copying MDAnalysisTests/data/lammps/albite_triclinic.data -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,205 copying MDAnalysisTests/data/lammps/wat.lammpstrj_long.bz2 -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,208 copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.in -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,211 copying MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,220 copying MDAnalysisTests/data/lammps/image_vf.lammpstrj -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,224 copying MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2 -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,233 copying MDAnalysisTests/data/lammps/mass_q_elem.lammpstrj -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,236 copying MDAnalysisTests/data/lammps/hydrogen-class1.data2 -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,238 copying MDAnalysisTests/data/lammps/spce_no_coords.lammpstrj.bz2 -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,241 copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,255 copying MDAnalysisTests/data/lammps/spce_all_coords.lammpstrj.bz2 -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,283 copying MDAnalysisTests/data/lammps/image_vf.data -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,286 copying MDAnalysisTests/data/lammps/datatest.data -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,342 copying MDAnalysisTests/data/lammps/additional_columns.lammpstrj -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,344 copying MDAnalysisTests/data/lammps/nomass_elemx.lammpstrj -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,347 copying MDAnalysisTests/data/lammps/chain_initial.data -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,349 copying MDAnalysisTests/data/lammps/deletedatoms.data -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,351 copying MDAnalysisTests/data/lammps/datatest.trz -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,362 copying MDAnalysisTests/data/lammps/chain_dump_2.lammpstrj -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,364 copying MDAnalysisTests/data/lammps/pairij_coeffs.data.bz2 -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,368 copying MDAnalysisTests/data/lammps/chain_dump_1.lammpstrj -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,371 copying MDAnalysisTests/data/lammps/albite_triclinic.dump -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,374 copying MDAnalysisTests/data/lammps/additional_columns.data -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,376 copying MDAnalysisTests/data/lammps/hydrogen-class1.data -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,379 copying MDAnalysisTests/data/lammps/wat.lammpstrj.bz2 -> build/lib/MDAnalysisTests/data/lammps 2025-10-18T00:55:40,382 copying MDAnalysisTests/data/gms/surf2wat.gms -> build/lib/MDAnalysisTests/data/gms 2025-10-18T00:55:40,386 copying MDAnalysisTests/data/gms/symopt.gms -> build/lib/MDAnalysisTests/data/gms 2025-10-18T00:55:40,391 copying MDAnalysisTests/data/gms/c1opt.gms.gz -> build/lib/MDAnalysisTests/data/gms 2025-10-18T00:55:40,394 copying MDAnalysisTests/data/dlpoly/CONFIG_minimal -> build/lib/MDAnalysisTests/data/dlpoly 2025-10-18T00:55:40,397 copying MDAnalysisTests/data/dlpoly/CONFIG -> build/lib/MDAnalysisTests/data/dlpoly 2025-10-18T00:55:40,401 copying MDAnalysisTests/data/dlpoly/CONFIG_order -> build/lib/MDAnalysisTests/data/dlpoly 2025-10-18T00:55:40,404 copying MDAnalysisTests/data/dlpoly/HISTORY_order -> build/lib/MDAnalysisTests/data/dlpoly 2025-10-18T00:55:40,407 copying MDAnalysisTests/data/dlpoly/HISTORY_minimal_cell -> build/lib/MDAnalysisTests/data/dlpoly 2025-10-18T00:55:40,410 copying MDAnalysisTests/data/dlpoly/HISTORY_minimal -> build/lib/MDAnalysisTests/data/dlpoly 2025-10-18T00:55:40,413 copying MDAnalysisTests/data/dlpoly/HISTORY -> build/lib/MDAnalysisTests/data/dlpoly 2025-10-18T00:55:40,421 copying MDAnalysisTests/data/dlpoly/HISTORY_classic -> build/lib/MDAnalysisTests/data/dlpoly 2025-10-18T00:55:40,423 copying MDAnalysisTests/data/coordinates/test.arc -> build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:40,426 copying MDAnalysisTests/data/coordinates/new_hexane.arc -> build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:40,429 copying MDAnalysisTests/data/coordinates/test.gro -> build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:40,431 copying MDAnalysisTests/data/coordinates/test_incomplete_vel.gro -> build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:40,434 copying MDAnalysisTests/data/coordinates/test_topology.pdb -> build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:40,437 copying MDAnalysisTests/data/coordinates/README.md -> build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:40,439 copying MDAnalysisTests/data/coordinates/test.gro.bz2 -> build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:40,442 copying MDAnalysisTests/data/coordinates/test.xtc -> build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:40,446 copying MDAnalysisTests/data/coordinates/test.tng -> build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:40,449 copying MDAnalysisTests/data/coordinates/test.txyz -> build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:40,452 copying MDAnalysisTests/data/coordinates/test.xyz.bz2 -> build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:40,455 copying MDAnalysisTests/data/coordinates/test.h5md -> build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:40,460 copying MDAnalysisTests/data/coordinates/test.dcd -> build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:40,463 copying MDAnalysisTests/data/coordinates/test.xyz -> build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:40,466 copying MDAnalysisTests/data/coordinates/test.trr -> build/lib/MDAnalysisTests/data/coordinates 2025-10-18T00:55:40,469 copying MDAnalysisTests/data/test_highf.xvg -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,471 copying MDAnalysisTests/data/bad_num_col.xvg -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,474 copying MDAnalysisTests/data/test.xvg -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,477 copying MDAnalysisTests/data/test_lowf.xvg -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,479 copying MDAnalysisTests/data/173D.mmtf -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,483 copying MDAnalysisTests/data/1ubq-less-optional.mmtf -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,486 copying MDAnalysisTests/data/3NJW-onlyrequired.mmtf -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,489 copying MDAnalysisTests/data/analysis/1k5i_c36.psf.gz -> build/lib/MDAnalysisTests/data/analysis 2025-10-18T00:55:40,504 copying MDAnalysisTests/data/analysis/align_bound.pdb.gz -> build/lib/MDAnalysisTests/data/analysis 2025-10-18T00:55:40,506 copying MDAnalysisTests/data/analysis/YiiP_lipids.gro.gz -> build/lib/MDAnalysisTests/data/analysis 2025-10-18T00:55:40,524 copying MDAnalysisTests/data/analysis/align_unbound.pdb.gz -> build/lib/MDAnalysisTests/data/analysis 2025-10-18T00:55:40,527 copying MDAnalysisTests/data/analysis/1k5i_c36.pdb.gz -> build/lib/MDAnalysisTests/data/analysis 2025-10-18T00:55:40,534 copying MDAnalysisTests/data/analysis/YiiP_lipids.xtc -> build/lib/MDAnalysisTests/data/analysis 2025-10-18T00:55:40,549 creating build/lib/MDAnalysisTests/data/analysis/msd 2025-10-18T00:55:40,550 copying MDAnalysisTests/data/analysis/msd/test_non_linear.dump.bz2 -> build/lib/MDAnalysisTests/data/analysis/msd 2025-10-18T00:55:40,553 copying MDAnalysisTests/data/example_longer.gsd -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,582 copying MDAnalysisTests/data/example.gsd -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,591 copying MDAnalysisTests/data/example_bonds.gsd -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,595 copying MDAnalysisTests/data/windows/WIN_nmr_neopetrosiamide.pdb -> build/lib/MDAnalysisTests/data/windows 2025-10-18T00:55:40,610 copying MDAnalysisTests/data/windows/README.md -> build/lib/MDAnalysisTests/data/windows 2025-10-18T00:55:40,612 copying MDAnalysisTests/data/windows/WIN_HISTORY -> build/lib/MDAnalysisTests/data/windows 2025-10-18T00:55:40,618 copying MDAnalysisTests/data/windows/WIN_wat.lammpstrj -> build/lib/MDAnalysisTests/data/windows 2025-10-18T00:55:40,620 copying MDAnalysisTests/data/windows/WIN_ache.mdcrd -> build/lib/MDAnalysisTests/data/windows 2025-10-18T00:55:40,625 copying MDAnalysisTests/data/windows/WIN_test.arc -> build/lib/MDAnalysisTests/data/windows 2025-10-18T00:55:40,627 copying MDAnalysisTests/data/atomtypes_charge.itp -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,630 copying MDAnalysisTests/data/no_endif_spc.itp -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,632 copying MDAnalysisTests/data/edited_itp.itp -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,635 copying MDAnalysisTests/data/spce.itp -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,637 copying MDAnalysisTests/data/itp_nomass.itp -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,640 copying MDAnalysisTests/data/atomtypes.itp -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,642 copying MDAnalysisTests/data/gromacs_ala10.itp -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,645 copying MDAnalysisTests/data/tip5p.itp -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,647 creating build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff 2025-10-18T00:55:40,648 copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ff_dum.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff 2025-10-18T00:55:40,650 copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ions.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff 2025-10-18T00:55:40,653 copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ffbonded.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff 2025-10-18T00:55:40,656 copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/__init__.py -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff 2025-10-18T00:55:40,658 copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/spc.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff 2025-10-18T00:55:40,660 copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/forcefield.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff 2025-10-18T00:55:40,662 copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ffnonbonded.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff 2025-10-18T00:55:40,667 copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/test.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff 2025-10-18T00:55:40,670 copying MDAnalysisTests/data/adk_open.coor -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,674 copying MDAnalysisTests/data/cobrotoxin.h5md -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,706 copying MDAnalysisTests/data/cu.h5md -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,713 copying MDAnalysisTests/data/cu_malformed.h5md -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,722 copying MDAnalysisTests/data/fhiaims.in -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,724 copying MDAnalysisTests/data/bad_top.top -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,726 copying MDAnalysisTests/data/gromacs_ala10.top -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,729 copying MDAnalysisTests/data/molecule.sdf -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,732 copying MDAnalysisTests/data/test.edr -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,734 copying MDAnalysisTests/data/single_frame.edr -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,736 copying MDAnalysisTests/data/argon_npt_compressed_vels_forces.tng -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,786 copying MDAnalysisTests/data/argon_npt_compressed.tng -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,795 copying MDAnalysisTests/data/argon_npt_compressed_uneven.tng -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,800 copying MDAnalysisTests/data/4x8u.pdbx -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,803 copying MDAnalysisTests/data/aux_edr_raw.txt -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:40,806 creating build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,807 copying MDAnalysisTests/data/dssp/4gcnA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,811 copying MDAnalysisTests/data/dssp/3hklA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,814 copying MDAnalysisTests/data/dssp/3l4rA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,818 copying MDAnalysisTests/data/dssp/1ahsA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,821 copying MDAnalysisTests/data/dssp/2cviA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,824 copying MDAnalysisTests/data/dssp/1eteA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,827 copying MDAnalysisTests/data/dssp/1i8nA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,831 copying MDAnalysisTests/data/dssp/3vjzA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,834 copying MDAnalysisTests/data/dssp/3nzmA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,838 copying MDAnalysisTests/data/dssp/1pdoA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,841 copying MDAnalysisTests/data/dssp/3ii2A.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,844 copying MDAnalysisTests/data/dssp/3nbkA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,848 copying MDAnalysisTests/data/dssp/3ny7A.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,851 copying MDAnalysisTests/data/dssp/1or4A.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,854 copying MDAnalysisTests/data/dssp/3aqgA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,857 copying MDAnalysisTests/data/dssp/3e8mA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,860 copying MDAnalysisTests/data/dssp/2qdlA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,863 copying MDAnalysisTests/data/dssp/1y1lA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,866 copying MDAnalysisTests/data/dssp/3gknA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,869 copying MDAnalysisTests/data/dssp/2xdgA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,872 copying MDAnalysisTests/data/dssp/1mr1D.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,876 copying MDAnalysisTests/data/dssp/1v7mV.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,879 copying MDAnalysisTests/data/dssp/3gfsA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,882 copying MDAnalysisTests/data/dssp/2a2lA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,885 copying MDAnalysisTests/data/dssp/2i39A.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,889 copying MDAnalysisTests/data/dssp/2va0A.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,892 copying MDAnalysisTests/data/dssp/1h4aX.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,895 copying MDAnalysisTests/data/dssp/2xcjA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,897 copying MDAnalysisTests/data/dssp/3k7pA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,900 copying MDAnalysisTests/data/dssp/3ejfA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,904 copying MDAnalysisTests/data/dssp/1mr1D_failing.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,907 copying MDAnalysisTests/data/dssp/1bvyF.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,910 copying MDAnalysisTests/data/dssp/2j49A.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,914 copying MDAnalysisTests/data/dssp/3pivA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,917 copying MDAnalysisTests/data/dssp/3ieyB.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,920 copying MDAnalysisTests/data/dssp/2cayA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,923 copying MDAnalysisTests/data/dssp/2xr6A.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,927 copying MDAnalysisTests/data/dssp/3on9A.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,930 copying MDAnalysisTests/data/dssp/1lpbA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,933 copying MDAnalysisTests/data/dssp/3gwiA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,936 copying MDAnalysisTests/data/dssp/3q4oA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,939 copying MDAnalysisTests/data/dssp/3nngA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,944 copying MDAnalysisTests/data/dssp/3fhkA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,948 copying MDAnalysisTests/data/dssp/4dkcA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,952 copying MDAnalysisTests/data/dssp/2fvvA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,955 copying MDAnalysisTests/data/dssp/3lqcA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,959 copying MDAnalysisTests/data/dssp/2gu3A.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,963 copying MDAnalysisTests/data/dssp/3t5gB.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,966 copying MDAnalysisTests/data/dssp/3so6A.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,970 copying MDAnalysisTests/data/dssp/wrong_hydrogens.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,973 copying MDAnalysisTests/data/dssp/1dx5I.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,977 copying MDAnalysisTests/data/dssp/3a4rA.pdb.gz -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,981 copying MDAnalysisTests/data/dssp/1mr1D.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,984 copying MDAnalysisTests/data/dssp/1or4A.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,987 copying MDAnalysisTests/data/dssp/2xr6A.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,990 copying MDAnalysisTests/data/dssp/3q4oA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,993 copying MDAnalysisTests/data/dssp/1dx5I.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,996 copying MDAnalysisTests/data/dssp/3lqcA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:40,999 copying MDAnalysisTests/data/dssp/3t5gB.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,002 copying MDAnalysisTests/data/dssp/3pivA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,005 copying MDAnalysisTests/data/dssp/3nbkA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,008 copying MDAnalysisTests/data/dssp/1y1lA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,011 copying MDAnalysisTests/data/dssp/3ny7A.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,014 copying MDAnalysisTests/data/dssp/2qdlA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,017 copying MDAnalysisTests/data/dssp/3ieyB.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,020 copying MDAnalysisTests/data/dssp/3ejfA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,023 copying MDAnalysisTests/data/dssp/2gu3A.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,026 copying MDAnalysisTests/data/dssp/2a2lA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,028 copying MDAnalysisTests/data/dssp/3gfsA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,031 copying MDAnalysisTests/data/dssp/3aqgA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,034 copying MDAnalysisTests/data/dssp/1i8nA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,037 copying MDAnalysisTests/data/dssp/3hklA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,039 copying MDAnalysisTests/data/dssp/3k7pA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,042 copying MDAnalysisTests/data/dssp/1ahsA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,044 copying MDAnalysisTests/data/dssp/1lpbA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,046 copying MDAnalysisTests/data/dssp/1v7mV.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,048 copying MDAnalysisTests/data/dssp/3on9A.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,051 copying MDAnalysisTests/data/dssp/2i39A.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,053 copying MDAnalysisTests/data/dssp/3fhkA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,055 copying MDAnalysisTests/data/dssp/3ii2A.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,058 copying MDAnalysisTests/data/dssp/2cviA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,060 copying MDAnalysisTests/data/dssp/1h4aX.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,062 copying MDAnalysisTests/data/dssp/3nngA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,064 copying MDAnalysisTests/data/dssp/2fvvA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,067 copying MDAnalysisTests/data/dssp/1pdoA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,069 copying MDAnalysisTests/data/dssp/3l4rA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,071 copying MDAnalysisTests/data/dssp/3gwiA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,074 copying MDAnalysisTests/data/dssp/2j49A.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,076 copying MDAnalysisTests/data/dssp/3e8mA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,078 copying MDAnalysisTests/data/dssp/1bvyF.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,081 copying MDAnalysisTests/data/dssp/3nzmA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,083 copying MDAnalysisTests/data/dssp/4gcnA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,086 copying MDAnalysisTests/data/dssp/2cayA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,088 copying MDAnalysisTests/data/dssp/3so6A.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,090 copying MDAnalysisTests/data/dssp/1eteA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,093 copying MDAnalysisTests/data/dssp/2xcjA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,095 copying MDAnalysisTests/data/dssp/3gknA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,097 copying MDAnalysisTests/data/dssp/2xdgA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,100 copying MDAnalysisTests/data/dssp/3a4rA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,102 copying MDAnalysisTests/data/dssp/2va0A.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,104 copying MDAnalysisTests/data/dssp/3vjzA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,106 copying MDAnalysisTests/data/dssp/4dkcA.pdb.dssp -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,123 copying MDAnalysisTests/data/adk_closed_no_segid.dms -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:41,225 copying MDAnalysisTests/data/adk_oplsaa.pdb -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:41,275 copying MDAnalysisTests/data/adk_oplsaa.tpr -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:41,314 copying MDAnalysisTests/data/adk_oplsaa.trr -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:41,489 copying MDAnalysisTests/data/adk_oplsaa.xtc -> build/lib/MDAnalysisTests/data 2025-10-18T00:55:41,614 copying MDAnalysisTests/data/dssp/README.md -> build/lib/MDAnalysisTests/data/dssp 2025-10-18T00:55:41,617 copying MDAnalysisTests/data/gms/c1opt.inp -> build/lib/MDAnalysisTests/data/gms 2025-10-18T00:55:41,620 copying MDAnalysisTests/data/gms/surf2wat.inp -> build/lib/MDAnalysisTests/data/gms 2025-10-18T00:55:41,623 copying MDAnalysisTests/data/gms/symopt.inp -> build/lib/MDAnalysisTests/data/gms 2025-10-18T00:55:41,693 copying MDAnalysisTests/data/analysis/1k5i_c36.pdb.gz -> build/lib/MDAnalysisTests/data/analysis 2025-10-18T00:55:41,700 copying MDAnalysisTests/data/analysis/1k5i_c36.psf.gz -> build/lib/MDAnalysisTests/data/analysis 2025-10-18T00:55:41,708 copying MDAnalysisTests/data/analysis/YiiP_lipids.gro.gz -> build/lib/MDAnalysisTests/data/analysis 2025-10-18T00:55:41,757 copying MDAnalysisTests/data/analysis/YiiP_lipids.xtc -> build/lib/MDAnalysisTests/data/analysis 2025-10-18T00:55:41,819 installing to build/bdist.linux-armv7l/wheel 2025-10-18T00:55:41,820 running install 2025-10-18T00:55:41,843 running install_lib 2025-10-18T00:55:41,850 creating build/bdist.linux-armv7l/wheel 2025-10-18T00:55:41,852 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests 2025-10-18T00:55:41,854 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/visualization 2025-10-18T00:55:41,856 copying build/lib/MDAnalysisTests/visualization/test_streamlines.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/visualization 2025-10-18T00:55:41,859 copying build/lib/MDAnalysisTests/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/visualization 2025-10-18T00:55:41,861 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/formats 2025-10-18T00:55:41,862 copying build/lib/MDAnalysisTests/formats/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/formats 2025-10-18T00:55:41,865 copying build/lib/MDAnalysisTests/formats/test_libdcd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/formats 2025-10-18T00:55:41,869 copying build/lib/MDAnalysisTests/formats/test_libmdaxdr.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/formats 2025-10-18T00:55:41,872 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/parallelism 2025-10-18T00:55:41,874 copying build/lib/MDAnalysisTests/parallelism/test_multiprocessing.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/parallelism 2025-10-18T00:55:41,876 copying build/lib/MDAnalysisTests/parallelism/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/parallelism 2025-10-18T00:55:41,879 copying build/lib/MDAnalysisTests/parallelism/test_pickle_transformation.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/parallelism 2025-10-18T00:55:41,882 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/topology 2025-10-18T00:55:41,883 copying build/lib/MDAnalysisTests/topology/test_altloc.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,886 copying build/lib/MDAnalysisTests/topology/test_itp.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,889 copying build/lib/MDAnalysisTests/topology/test_pqr.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,891 copying build/lib/MDAnalysisTests/topology/test_dlpoly.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,894 copying build/lib/MDAnalysisTests/topology/test_txyz.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,896 copying build/lib/MDAnalysisTests/topology/test_tables.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,899 copying build/lib/MDAnalysisTests/topology/test_pdb.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,902 copying build/lib/MDAnalysisTests/topology/test_mol2.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,905 copying build/lib/MDAnalysisTests/topology/test_dms.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,907 copying build/lib/MDAnalysisTests/topology/test_xyz.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,908 copying build/lib/MDAnalysisTests/topology/test_hoomdxml.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,910 copying build/lib/MDAnalysisTests/topology/test_xpdb.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,912 copying build/lib/MDAnalysisTests/topology/test_fhiaims.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,914 copying build/lib/MDAnalysisTests/topology/test_gms.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,916 copying build/lib/MDAnalysisTests/topology/test_gro.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,919 copying build/lib/MDAnalysisTests/topology/test_mmtf.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,921 copying build/lib/MDAnalysisTests/topology/test_topology_base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,923 copying build/lib/MDAnalysisTests/topology/test_topology_str_types.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,925 copying build/lib/MDAnalysisTests/topology/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,927 copying build/lib/MDAnalysisTests/topology/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,930 copying build/lib/MDAnalysisTests/topology/test_top.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,933 copying build/lib/MDAnalysisTests/topology/test_crd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,936 copying build/lib/MDAnalysisTests/topology/test_psf.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,939 copying build/lib/MDAnalysisTests/topology/test_gsd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,941 copying build/lib/MDAnalysisTests/topology/test_guessers.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,945 copying build/lib/MDAnalysisTests/topology/test_tprparser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,948 copying build/lib/MDAnalysisTests/topology/test_lammpsdata.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,951 copying build/lib/MDAnalysisTests/topology/test_minimal.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,953 copying build/lib/MDAnalysisTests/topology/test_pdbqt.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/topology 2025-10-18T00:55:41,955 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/converters 2025-10-18T00:55:41,957 copying build/lib/MDAnalysisTests/converters/test_openmm.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/converters 2025-10-18T00:55:41,961 copying build/lib/MDAnalysisTests/converters/test_rdkit.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/converters 2025-10-18T00:55:41,964 copying build/lib/MDAnalysisTests/converters/test_base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/converters 2025-10-18T00:55:41,966 copying build/lib/MDAnalysisTests/converters/test_parmed_parser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/converters 2025-10-18T00:55:41,969 copying build/lib/MDAnalysisTests/converters/test_rdkit_parser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/converters 2025-10-18T00:55:41,971 copying build/lib/MDAnalysisTests/converters/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/converters 2025-10-18T00:55:41,974 copying build/lib/MDAnalysisTests/converters/test_parmed.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/converters 2025-10-18T00:55:41,977 copying build/lib/MDAnalysisTests/converters/test_openmm_parser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/converters 2025-10-18T00:55:41,980 copying build/lib/MDAnalysisTests/util.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests 2025-10-18T00:55:41,983 copying build/lib/MDAnalysisTests/datafiles.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests 2025-10-18T00:55:41,987 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/coordinates 2025-10-18T00:55:41,989 copying build/lib/MDAnalysisTests/coordinates/test_imd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:41,993 copying build/lib/MDAnalysisTests/coordinates/test_timestep_api.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:41,996 copying build/lib/MDAnalysisTests/coordinates/test_pqr.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:41,999 copying build/lib/MDAnalysisTests/coordinates/test_dlpoly.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,002 copying build/lib/MDAnalysisTests/coordinates/test_namdbin.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,004 copying build/lib/MDAnalysisTests/coordinates/test_txyz.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,005 copying build/lib/MDAnalysisTests/coordinates/test_pdb.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,009 copying build/lib/MDAnalysisTests/coordinates/test_trc.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,012 copying build/lib/MDAnalysisTests/coordinates/test_windows.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,014 copying build/lib/MDAnalysisTests/coordinates/test_chemfiles.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,016 copying build/lib/MDAnalysisTests/coordinates/test_mol2.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,019 copying build/lib/MDAnalysisTests/coordinates/test_dms.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,020 copying build/lib/MDAnalysisTests/coordinates/test_xyz.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,023 copying build/lib/MDAnalysisTests/coordinates/test_h5md.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,026 copying build/lib/MDAnalysisTests/coordinates/test_writer_api.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,028 copying build/lib/MDAnalysisTests/coordinates/test_tng.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,031 copying build/lib/MDAnalysisTests/coordinates/test_dcd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,033 copying build/lib/MDAnalysisTests/coordinates/test_xdr.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,036 copying build/lib/MDAnalysisTests/coordinates/test_fhiaims.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,039 copying build/lib/MDAnalysisTests/coordinates/test_memory.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,041 copying build/lib/MDAnalysisTests/coordinates/test_gms.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,043 copying build/lib/MDAnalysisTests/coordinates/test_gro.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,046 copying build/lib/MDAnalysisTests/coordinates/test_chainreader.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,048 copying build/lib/MDAnalysisTests/coordinates/test_null.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,050 copying build/lib/MDAnalysisTests/coordinates/test_tpr.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,053 copying build/lib/MDAnalysisTests/coordinates/test_mmtf.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,054 copying build/lib/MDAnalysisTests/coordinates/test_lammps.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,057 copying build/lib/MDAnalysisTests/coordinates/test_amber_inpcrd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,059 copying build/lib/MDAnalysisTests/coordinates/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,061 copying build/lib/MDAnalysisTests/coordinates/test_trj.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,063 copying build/lib/MDAnalysisTests/coordinates/test_reader_api.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,065 copying build/lib/MDAnalysisTests/coordinates/reference.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,068 copying build/lib/MDAnalysisTests/coordinates/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,070 copying build/lib/MDAnalysisTests/coordinates/test_netcdf.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,074 copying build/lib/MDAnalysisTests/coordinates/test_crd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,076 copying build/lib/MDAnalysisTests/coordinates/test_gsd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,078 copying build/lib/MDAnalysisTests/coordinates/test_trz.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,081 copying build/lib/MDAnalysisTests/coordinates/test_copying.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,083 copying build/lib/MDAnalysisTests/coordinates/test_pdbqt.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,085 copying build/lib/MDAnalysisTests/coordinates/test_writer_registration.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/coordinates 2025-10-18T00:55:42,088 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/transformations 2025-10-18T00:55:42,089 copying build/lib/MDAnalysisTests/transformations/test_fit.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/transformations 2025-10-18T00:55:42,091 copying build/lib/MDAnalysisTests/transformations/test_translate.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/transformations 2025-10-18T00:55:42,094 copying build/lib/MDAnalysisTests/transformations/test_base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/transformations 2025-10-18T00:55:42,096 copying build/lib/MDAnalysisTests/transformations/test_nojump.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/transformations 2025-10-18T00:55:42,098 copying build/lib/MDAnalysisTests/transformations/test_boxdimensions.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/transformations 2025-10-18T00:55:42,101 copying build/lib/MDAnalysisTests/transformations/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/transformations 2025-10-18T00:55:42,102 copying build/lib/MDAnalysisTests/transformations/test_rotate.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/transformations 2025-10-18T00:55:42,105 copying build/lib/MDAnalysisTests/transformations/test_positionaveraging.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/transformations 2025-10-18T00:55:42,107 copying build/lib/MDAnalysisTests/transformations/test_wrap.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/transformations 2025-10-18T00:55:42,110 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/utils 2025-10-18T00:55:42,111 copying build/lib/MDAnalysisTests/utils/test_failure.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/utils 2025-10-18T00:55:42,113 copying build/lib/MDAnalysisTests/utils/test_transformations.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/utils 2025-10-18T00:55:42,116 copying build/lib/MDAnalysisTests/utils/test_selections.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/utils 2025-10-18T00:55:42,118 copying build/lib/MDAnalysisTests/utils/test_imports.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/utils 2025-10-18T00:55:42,120 copying build/lib/MDAnalysisTests/utils/test_authors.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/utils 2025-10-18T00:55:42,122 copying build/lib/MDAnalysisTests/utils/test_meta.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/utils 2025-10-18T00:55:42,124 copying build/lib/MDAnalysisTests/utils/test_duecredit.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/utils 2025-10-18T00:55:42,126 copying build/lib/MDAnalysisTests/utils/test_qcprot.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/utils 2025-10-18T00:55:42,128 copying build/lib/MDAnalysisTests/utils/test_modelling.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/utils 2025-10-18T00:55:42,131 copying build/lib/MDAnalysisTests/utils/test_pickleio.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/utils 2025-10-18T00:55:42,133 copying build/lib/MDAnalysisTests/utils/test_streamio.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/utils 2025-10-18T00:55:42,135 copying build/lib/MDAnalysisTests/utils/test_log.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/utils 2025-10-18T00:55:42,137 copying build/lib/MDAnalysisTests/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/utils 2025-10-18T00:55:42,139 copying build/lib/MDAnalysisTests/utils/test_datafiles.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/utils 2025-10-18T00:55:42,141 copying build/lib/MDAnalysisTests/utils/test_persistence.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/utils 2025-10-18T00:55:42,143 copying build/lib/MDAnalysisTests/utils/test_units.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/utils 2025-10-18T00:55:42,146 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/lib 2025-10-18T00:55:42,147 copying build/lib/MDAnalysisTests/lib/test_util.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/lib 2025-10-18T00:55:42,150 copying build/lib/MDAnalysisTests/lib/test_pkdtree.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/lib 2025-10-18T00:55:42,153 copying build/lib/MDAnalysisTests/lib/test_qcprot.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/lib 2025-10-18T00:55:42,155 copying build/lib/MDAnalysisTests/lib/test_augment.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/lib 2025-10-18T00:55:42,157 copying build/lib/MDAnalysisTests/lib/test_distances.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/lib 2025-10-18T00:55:42,161 copying build/lib/MDAnalysisTests/lib/test_nsgrid.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/lib 2025-10-18T00:55:42,164 copying build/lib/MDAnalysisTests/lib/test_neighborsearch.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/lib 2025-10-18T00:55:42,166 copying build/lib/MDAnalysisTests/lib/test_mdamath.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/lib 2025-10-18T00:55:42,168 copying build/lib/MDAnalysisTests/lib/test_log.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/lib 2025-10-18T00:55:42,170 copying build/lib/MDAnalysisTests/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/lib 2025-10-18T00:55:42,172 copying build/lib/MDAnalysisTests/lib/test_cutil.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/lib 2025-10-18T00:55:42,174 copying build/lib/MDAnalysisTests/test_api.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests 2025-10-18T00:55:42,176 copying build/lib/MDAnalysisTests/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests 2025-10-18T00:55:42,179 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/auxiliary 2025-10-18T00:55:42,180 copying build/lib/MDAnalysisTests/auxiliary/test_core.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/auxiliary 2025-10-18T00:55:42,182 copying build/lib/MDAnalysisTests/auxiliary/test_edr.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/auxiliary 2025-10-18T00:55:42,186 copying build/lib/MDAnalysisTests/auxiliary/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/auxiliary 2025-10-18T00:55:42,187 copying build/lib/MDAnalysisTests/auxiliary/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/auxiliary 2025-10-18T00:55:42,190 copying build/lib/MDAnalysisTests/auxiliary/test_xvg.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/auxiliary 2025-10-18T00:55:42,193 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/core 2025-10-18T00:55:42,194 copying build/lib/MDAnalysisTests/core/test_atomgroup.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,198 copying build/lib/MDAnalysisTests/core/test_group_traj_access.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,200 copying build/lib/MDAnalysisTests/core/test_unwrap.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,203 copying build/lib/MDAnalysisTests/core/test_updating_atomgroup.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,205 copying build/lib/MDAnalysisTests/core/test_topologyattrs.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,208 copying build/lib/MDAnalysisTests/core/test_topologyobjects.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,211 copying build/lib/MDAnalysisTests/core/test_residuegroup.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,213 copying build/lib/MDAnalysisTests/core/test_index_dtype.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,215 copying build/lib/MDAnalysisTests/core/test_topology.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,218 copying build/lib/MDAnalysisTests/core/util.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,220 copying build/lib/MDAnalysisTests/core/test_atom.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,223 copying build/lib/MDAnalysisTests/core/test_atomselections.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,226 copying build/lib/MDAnalysisTests/core/test_residue.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,228 copying build/lib/MDAnalysisTests/core/test_accessors.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,230 copying build/lib/MDAnalysisTests/core/test_accumulate.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,233 copying build/lib/MDAnalysisTests/core/test_universe.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,236 copying build/lib/MDAnalysisTests/core/test_segmentgroup.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,239 copying build/lib/MDAnalysisTests/core/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,240 copying build/lib/MDAnalysisTests/core/test_segment.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,242 copying build/lib/MDAnalysisTests/core/test_wrap.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,245 copying build/lib/MDAnalysisTests/core/test_fragments.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,248 copying build/lib/MDAnalysisTests/core/test_copying.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,250 copying build/lib/MDAnalysisTests/core/test_requires.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,252 copying build/lib/MDAnalysisTests/core/test_groups.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/core 2025-10-18T00:55:42,256 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/import 2025-10-18T00:55:42,257 copying build/lib/MDAnalysisTests/import/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/import 2025-10-18T00:55:42,258 copying build/lib/MDAnalysisTests/import/test_import.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/import 2025-10-18T00:55:42,260 copying build/lib/MDAnalysisTests/import/fork_called.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/import 2025-10-18T00:55:42,264 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/analysis 2025-10-18T00:55:42,265 copying build/lib/MDAnalysisTests/analysis/test_waterdynamics.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,267 copying build/lib/MDAnalysisTests/analysis/test_msd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,270 copying build/lib/MDAnalysisTests/analysis/test_helix_analysis.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,273 copying build/lib/MDAnalysisTests/analysis/test_rms.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,276 copying build/lib/MDAnalysisTests/analysis/test_rdf_s.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,278 copying build/lib/MDAnalysisTests/analysis/test_atomicdistances.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,280 copying build/lib/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,283 copying build/lib/MDAnalysisTests/analysis/test_pca.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,285 copying build/lib/MDAnalysisTests/analysis/test_leaflet.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,288 copying build/lib/MDAnalysisTests/analysis/test_wbridge.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,291 copying build/lib/MDAnalysisTests/analysis/test_dielectric.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,293 copying build/lib/MDAnalysisTests/analysis/test_data.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,295 copying build/lib/MDAnalysisTests/analysis/test_base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,298 copying build/lib/MDAnalysisTests/analysis/test_lineardensity.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,300 copying build/lib/MDAnalysisTests/analysis/test_distances.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,302 copying build/lib/MDAnalysisTests/analysis/test_nucleicacids.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,305 copying build/lib/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,307 copying build/lib/MDAnalysisTests/analysis/test_align.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,310 copying build/lib/MDAnalysisTests/analysis/test_density.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,313 copying build/lib/MDAnalysisTests/analysis/test_backends.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,315 copying build/lib/MDAnalysisTests/analysis/test_contacts.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,318 copying build/lib/MDAnalysisTests/analysis/test_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,320 copying build/lib/MDAnalysisTests/analysis/test_encore.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,323 copying build/lib/MDAnalysisTests/analysis/test_nuclinfo.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,326 copying build/lib/MDAnalysisTests/analysis/test_psa.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,328 copying build/lib/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,330 copying build/lib/MDAnalysisTests/analysis/test_bat.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,333 copying build/lib/MDAnalysisTests/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,335 copying build/lib/MDAnalysisTests/analysis/test_persistencelength.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,337 copying build/lib/MDAnalysisTests/analysis/conftest.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,340 copying build/lib/MDAnalysisTests/analysis/test_dssp.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,342 copying build/lib/MDAnalysisTests/analysis/test_rdf.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,344 copying build/lib/MDAnalysisTests/analysis/test_hole2.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,346 copying build/lib/MDAnalysisTests/analysis/test_results.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,348 copying build/lib/MDAnalysisTests/analysis/test_gnm.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,350 copying build/lib/MDAnalysisTests/analysis/test_dihedrals.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/analysis 2025-10-18T00:55:42,357 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data 2025-10-18T00:55:42,358 copying build/lib/MDAnalysisTests/data/SINGLECONECT.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,360 copying build/lib/MDAnalysisTests/data/example_longer.gsd -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,388 copying build/lib/MDAnalysisTests/data/mol2_comments_header_bat.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,390 copying build/lib/MDAnalysisTests/data/cobrotoxin.trr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,423 copying build/lib/MDAnalysisTests/data/legacy_DCD_adk_coords.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,427 copying build/lib/MDAnalysisTests/data/SiN_tric_namd.dcd -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,430 copying build/lib/MDAnalysisTests/data/five.xyz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,433 copying build/lib/MDAnalysisTests/data/adk_closed_domains.dms -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,441 copying build/lib/MDAnalysisTests/data/test_highf.xvg -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,443 copying build/lib/MDAnalysisTests/data/cobrotoxin.h5md -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,479 copying build/lib/MDAnalysisTests/data/1a28.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,483 copying build/lib/MDAnalysisTests/data/1A2C.pqr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,492 copying build/lib/MDAnalysisTests/data/C12x64.xml.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,495 copying build/lib/MDAnalysisTests/data/xyz_random_walk.xtc -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,499 copying build/lib/MDAnalysisTests/data/example.gsd -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,508 copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,510 copying build/lib/MDAnalysisTests/data/2r9r-1b.psf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,517 copying build/lib/MDAnalysisTests/data/test.edr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,518 copying build/lib/MDAnalysisTests/data/argon_npt_compressed_vels_forces.tng -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,534 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/gms 2025-10-18T00:55:42,535 copying build/lib/MDAnalysisTests/data/gms/surf2wat.gms -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gms 2025-10-18T00:55:42,539 copying build/lib/MDAnalysisTests/data/gms/c1opt.inp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gms 2025-10-18T00:55:42,541 copying build/lib/MDAnalysisTests/data/gms/symopt.inp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gms 2025-10-18T00:55:42,543 copying build/lib/MDAnalysisTests/data/gms/c1opt.gms.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gms 2025-10-18T00:55:42,545 copying build/lib/MDAnalysisTests/data/gms/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gms 2025-10-18T00:55:42,547 copying build/lib/MDAnalysisTests/data/gms/surf2wat.inp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gms 2025-10-18T00:55:42,549 copying build/lib/MDAnalysisTests/data/gms/symopt.gms -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gms 2025-10-18T00:55:42,552 copying build/lib/MDAnalysisTests/data/adk_notop.psf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,611 copying build/lib/MDAnalysisTests/data/legacy_DCD_c36_coords.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,616 copying build/lib/MDAnalysisTests/data/bad_top.top -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,619 copying build/lib/MDAnalysisTests/data/atomtypes_charge.itp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,621 copying build/lib/MDAnalysisTests/data/two_water_gro_nonames.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,623 copying build/lib/MDAnalysisTests/data/no_endif_spc.itp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,625 copying build/lib/MDAnalysisTests/data/conect_parsing.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,627 copying build/lib/MDAnalysisTests/data/RANDOM_WALK_TOPO.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,631 copying build/lib/MDAnalysisTests/data/bad_num_col.xvg -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,633 copying build/lib/MDAnalysisTests/data/surface.pdb.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,635 copying build/lib/MDAnalysisTests/data/cobrotoxin.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,753 copying build/lib/MDAnalysisTests/data/aux_edr.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,810 copying build/lib/MDAnalysisTests/data/1osm.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,816 copying build/lib/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,820 copying build/lib/MDAnalysisTests/data/adk_oplsaa_janin.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,826 copying build/lib/MDAnalysisTests/data/testENT.ent -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,829 copying build/lib/MDAnalysisTests/data/adk_notop_BAD.psf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,889 copying build/lib/MDAnalysisTests/data/sameresid_diffresname.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,892 copying build/lib/MDAnalysisTests/data/empty.dcd -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,894 copying build/lib/MDAnalysisTests/data/6msm.pdb.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,907 copying build/lib/MDAnalysisTests/data/edited_itp.itp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,912 copying build/lib/MDAnalysisTests/data/adk_oplsaa_CA_rmsf.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,915 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/capping 2025-10-18T00:55:42,916 copying build/lib/MDAnalysisTests/data/capping/aaqaa.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/capping 2025-10-18T00:55:42,920 copying build/lib/MDAnalysisTests/data/capping/nma.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/capping 2025-10-18T00:55:42,922 copying build/lib/MDAnalysisTests/data/capping/maestro_aaqaa_capped.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/capping 2025-10-18T00:55:42,927 copying build/lib/MDAnalysisTests/data/capping/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/capping 2025-10-18T00:55:42,928 copying build/lib/MDAnalysisTests/data/capping/ace.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/capping 2025-10-18T00:55:42,930 copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,932 copying build/lib/MDAnalysisTests/data/cu.h5md -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,957 copying build/lib/MDAnalysisTests/data/residwrap.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,960 copying build/lib/MDAnalysisTests/data/two_water_gro.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,962 copying build/lib/MDAnalysisTests/data/4E43.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,978 copying build/lib/MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8.dat -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,982 copying build/lib/MDAnalysisTests/data/conect_error.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:42,984 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/lammps 2025-10-18T00:55:42,985 copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.data.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,009 copying build/lib/MDAnalysisTests/data/lammps/a_lot_of_bond_types.data -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,011 copying build/lib/MDAnalysisTests/data/lammps/mini.data -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,013 copying build/lib/MDAnalysisTests/data/lammps/albite_triclinic.data -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,015 copying build/lib/MDAnalysisTests/data/lammps/wat.lammpstrj_long.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,017 copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.in -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,019 copying build/lib/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,025 copying build/lib/MDAnalysisTests/data/lammps/image_vf.lammpstrj -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,028 copying build/lib/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,033 copying build/lib/MDAnalysisTests/data/lammps/mass_q_elem.lammpstrj -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,035 copying build/lib/MDAnalysisTests/data/lammps/hydrogen-class1.data2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,037 copying build/lib/MDAnalysisTests/data/lammps/spce_no_coords.lammpstrj.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,039 copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,058 copying build/lib/MDAnalysisTests/data/lammps/spce_all_coords.lammpstrj.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,089 copying build/lib/MDAnalysisTests/data/lammps/image_vf.data -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,091 copying build/lib/MDAnalysisTests/data/lammps/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,092 copying build/lib/MDAnalysisTests/data/lammps/datatest.data -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,150 copying build/lib/MDAnalysisTests/data/lammps/additional_columns.lammpstrj -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,152 copying build/lib/MDAnalysisTests/data/lammps/nomass_elemx.lammpstrj -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,153 copying build/lib/MDAnalysisTests/data/lammps/chain_initial.data -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,155 copying build/lib/MDAnalysisTests/data/lammps/deletedatoms.data -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,157 copying build/lib/MDAnalysisTests/data/lammps/datatest.trz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,168 copying build/lib/MDAnalysisTests/data/lammps/chain_dump_2.lammpstrj -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,170 copying build/lib/MDAnalysisTests/data/lammps/pairij_coeffs.data.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,174 copying build/lib/MDAnalysisTests/data/lammps/chain_dump_1.lammpstrj -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,177 copying build/lib/MDAnalysisTests/data/lammps/albite_triclinic.dump -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,179 copying build/lib/MDAnalysisTests/data/lammps/additional_columns.data -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,181 copying build/lib/MDAnalysisTests/data/lammps/hydrogen-class1.data -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,184 copying build/lib/MDAnalysisTests/data/lammps/wat.lammpstrj.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/lammps 2025-10-18T00:55:43,186 copying build/lib/MDAnalysisTests/data/varying_occ_tmp.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:43,191 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/dssp 2025-10-18T00:55:43,192 copying build/lib/MDAnalysisTests/data/dssp/1mr1D.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,195 copying build/lib/MDAnalysisTests/data/dssp/4gcnA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,198 copying build/lib/MDAnalysisTests/data/dssp/3hklA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,201 copying build/lib/MDAnalysisTests/data/dssp/3l4rA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,205 copying build/lib/MDAnalysisTests/data/dssp/1or4A.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,207 copying build/lib/MDAnalysisTests/data/dssp/2xr6A.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,209 copying build/lib/MDAnalysisTests/data/dssp/1ahsA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,212 copying build/lib/MDAnalysisTests/data/dssp/2cviA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,215 copying build/lib/MDAnalysisTests/data/dssp/3q4oA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,218 copying build/lib/MDAnalysisTests/data/dssp/1eteA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,221 copying build/lib/MDAnalysisTests/data/dssp/1i8nA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,224 copying build/lib/MDAnalysisTests/data/dssp/3vjzA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,227 copying build/lib/MDAnalysisTests/data/dssp/3nzmA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,230 copying build/lib/MDAnalysisTests/data/dssp/1dx5I.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,233 copying build/lib/MDAnalysisTests/data/dssp/1pdoA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,236 copying build/lib/MDAnalysisTests/data/dssp/3ii2A.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,240 copying build/lib/MDAnalysisTests/data/dssp/3lqcA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,242 copying build/lib/MDAnalysisTests/data/dssp/README.md -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,245 copying build/lib/MDAnalysisTests/data/dssp/3nbkA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,248 copying build/lib/MDAnalysisTests/data/dssp/3t5gB.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,251 copying build/lib/MDAnalysisTests/data/dssp/3pivA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,253 copying build/lib/MDAnalysisTests/data/dssp/3ny7A.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,256 copying build/lib/MDAnalysisTests/data/dssp/1or4A.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,260 copying build/lib/MDAnalysisTests/data/dssp/3aqgA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,263 copying build/lib/MDAnalysisTests/data/dssp/3nbkA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,266 copying build/lib/MDAnalysisTests/data/dssp/3e8mA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,270 copying build/lib/MDAnalysisTests/data/dssp/1y1lA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,272 copying build/lib/MDAnalysisTests/data/dssp/3ny7A.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,275 copying build/lib/MDAnalysisTests/data/dssp/2qdlA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,278 copying build/lib/MDAnalysisTests/data/dssp/3ieyB.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,281 copying build/lib/MDAnalysisTests/data/dssp/3ejfA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,284 copying build/lib/MDAnalysisTests/data/dssp/2gu3A.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,286 copying build/lib/MDAnalysisTests/data/dssp/2a2lA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,289 copying build/lib/MDAnalysisTests/data/dssp/3gfsA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,292 copying build/lib/MDAnalysisTests/data/dssp/2qdlA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,296 copying build/lib/MDAnalysisTests/data/dssp/3aqgA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,299 copying build/lib/MDAnalysisTests/data/dssp/1y1lA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,302 copying build/lib/MDAnalysisTests/data/dssp/3gknA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,306 copying build/lib/MDAnalysisTests/data/dssp/1i8nA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,309 copying build/lib/MDAnalysisTests/data/dssp/2xdgA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,313 copying build/lib/MDAnalysisTests/data/dssp/3hklA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,316 copying build/lib/MDAnalysisTests/data/dssp/3k7pA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,318 copying build/lib/MDAnalysisTests/data/dssp/1ahsA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,321 copying build/lib/MDAnalysisTests/data/dssp/1mr1D.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,325 copying build/lib/MDAnalysisTests/data/dssp/1v7mV.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,329 copying build/lib/MDAnalysisTests/data/dssp/1lpbA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,331 copying build/lib/MDAnalysisTests/data/dssp/3gfsA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,335 copying build/lib/MDAnalysisTests/data/dssp/1v7mV.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,338 copying build/lib/MDAnalysisTests/data/dssp/3on9A.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,341 copying build/lib/MDAnalysisTests/data/dssp/2a2lA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,345 copying build/lib/MDAnalysisTests/data/dssp/2i39A.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,347 copying build/lib/MDAnalysisTests/data/dssp/3fhkA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,350 copying build/lib/MDAnalysisTests/data/dssp/2i39A.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,353 copying build/lib/MDAnalysisTests/data/dssp/2va0A.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,356 copying build/lib/MDAnalysisTests/data/dssp/3ii2A.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,358 copying build/lib/MDAnalysisTests/data/dssp/2cviA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,361 copying build/lib/MDAnalysisTests/data/dssp/1h4aX.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,364 copying build/lib/MDAnalysisTests/data/dssp/1h4aX.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,366 copying build/lib/MDAnalysisTests/data/dssp/3nngA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,368 copying build/lib/MDAnalysisTests/data/dssp/2xcjA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,370 copying build/lib/MDAnalysisTests/data/dssp/2fvvA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,372 copying build/lib/MDAnalysisTests/data/dssp/1pdoA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,374 copying build/lib/MDAnalysisTests/data/dssp/3l4rA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,375 copying build/lib/MDAnalysisTests/data/dssp/3k7pA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,378 copying build/lib/MDAnalysisTests/data/dssp/3gwiA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,380 copying build/lib/MDAnalysisTests/data/dssp/3ejfA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,382 copying build/lib/MDAnalysisTests/data/dssp/1mr1D_failing.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,385 copying build/lib/MDAnalysisTests/data/dssp/1bvyF.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,387 copying build/lib/MDAnalysisTests/data/dssp/2j49A.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,390 copying build/lib/MDAnalysisTests/data/dssp/2j49A.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,391 copying build/lib/MDAnalysisTests/data/dssp/3e8mA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,393 copying build/lib/MDAnalysisTests/data/dssp/1bvyF.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,395 copying build/lib/MDAnalysisTests/data/dssp/3pivA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,398 copying build/lib/MDAnalysisTests/data/dssp/3ieyB.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,400 copying build/lib/MDAnalysisTests/data/dssp/2cayA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,403 copying build/lib/MDAnalysisTests/data/dssp/2xr6A.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,405 copying build/lib/MDAnalysisTests/data/dssp/3on9A.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,408 copying build/lib/MDAnalysisTests/data/dssp/1lpbA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,410 copying build/lib/MDAnalysisTests/data/dssp/3gwiA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,413 copying build/lib/MDAnalysisTests/data/dssp/3q4oA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,415 copying build/lib/MDAnalysisTests/data/dssp/3nngA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,418 copying build/lib/MDAnalysisTests/data/dssp/3fhkA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,420 copying build/lib/MDAnalysisTests/data/dssp/4dkcA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,423 copying build/lib/MDAnalysisTests/data/dssp/3nzmA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,424 copying build/lib/MDAnalysisTests/data/dssp/4gcnA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,426 copying build/lib/MDAnalysisTests/data/dssp/2fvvA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,429 copying build/lib/MDAnalysisTests/data/dssp/2cayA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,430 copying build/lib/MDAnalysisTests/data/dssp/3lqcA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,433 copying build/lib/MDAnalysisTests/data/dssp/3so6A.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,435 copying build/lib/MDAnalysisTests/data/dssp/1eteA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,437 copying build/lib/MDAnalysisTests/data/dssp/2gu3A.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,439 copying build/lib/MDAnalysisTests/data/dssp/3t5gB.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,441 copying build/lib/MDAnalysisTests/data/dssp/2xcjA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,443 copying build/lib/MDAnalysisTests/data/dssp/3gknA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,444 copying build/lib/MDAnalysisTests/data/dssp/3so6A.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,447 copying build/lib/MDAnalysisTests/data/dssp/2xdgA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,448 copying build/lib/MDAnalysisTests/data/dssp/3a4rA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,450 copying build/lib/MDAnalysisTests/data/dssp/wrong_hydrogens.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,451 copying build/lib/MDAnalysisTests/data/dssp/2va0A.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,453 copying build/lib/MDAnalysisTests/data/dssp/1dx5I.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,455 copying build/lib/MDAnalysisTests/data/dssp/3vjzA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,457 copying build/lib/MDAnalysisTests/data/dssp/4dkcA.pdb.dssp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,459 copying build/lib/MDAnalysisTests/data/dssp/3a4rA.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dssp 2025-10-18T00:55:43,461 copying build/lib/MDAnalysisTests/data/adk_open.crd -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:43,467 copying build/lib/MDAnalysisTests/data/2r9r-1b.xyz.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:43,470 copying build/lib/MDAnalysisTests/data/residwrap_0base.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:43,472 copying build/lib/MDAnalysisTests/data/martini_dppc_chol_bilayer.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:43,482 copying build/lib/MDAnalysisTests/data/5KIH.mmtf.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:43,484 copying build/lib/MDAnalysisTests/data/adk_oplsaa_LYS_janin.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:43,486 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/mol2 2025-10-18T00:55:43,487 copying build/lib/MDAnalysisTests/data/mol2/Molecule.mol2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/mol2 2025-10-18T00:55:43,489 copying build/lib/MDAnalysisTests/data/mol2/sodium_ion.mol2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/mol2 2025-10-18T00:55:43,491 copying build/lib/MDAnalysisTests/data/mol2/BrokenMolecule.mol2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/mol2 2025-10-18T00:55:43,493 copying build/lib/MDAnalysisTests/data/mol2/Molecule_comments_header.mol2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/mol2 2025-10-18T00:55:43,495 copying build/lib/MDAnalysisTests/data/mol2/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/mol2 2025-10-18T00:55:43,496 copying build/lib/MDAnalysisTests/data/mol2/Molecules.mol2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/mol2 2025-10-18T00:55:43,511 copying build/lib/MDAnalysisTests/data/mol2/zinc_856218.mol2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/mol2 2025-10-18T00:55:43,514 copying build/lib/MDAnalysisTests/data/mol2/Ligand.mol2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/mol2 2025-10-18T00:55:43,516 copying build/lib/MDAnalysisTests/data/173D.mmtf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:43,519 copying build/lib/MDAnalysisTests/data/pdbqt_querypdb.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:43,521 copying build/lib/MDAnalysisTests/data/adk_oplsaa.trr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:43,929 copying build/lib/MDAnalysisTests/data/single_frame.edr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:43,931 copying build/lib/MDAnalysisTests/data/adk_oplsaa_dihedral_list.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:43,932 copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:43,935 copying build/lib/MDAnalysisTests/data/watdyn.dcd -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:43,937 copying build/lib/MDAnalysisTests/data/adk_dims2.dcd -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,081 copying build/lib/MDAnalysisTests/data/cobrotoxin_dry_neutral_0.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,084 copying build/lib/MDAnalysisTests/data/trzfile.trz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,134 copying build/lib/MDAnalysisTests/data/two_water_gro_widebox.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,135 copying build/lib/MDAnalysisTests/data/argon_npt_compressed.tng -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,154 copying build/lib/MDAnalysisTests/data/argon_npt_compressed.gro.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,158 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,159 copying build/lib/MDAnalysisTests/data/coordinates/test.arc -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,161 copying build/lib/MDAnalysisTests/data/coordinates/new_hexane.arc -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,163 copying build/lib/MDAnalysisTests/data/coordinates/test.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,165 copying build/lib/MDAnalysisTests/data/coordinates/test_incomplete_vel.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,166 copying build/lib/MDAnalysisTests/data/coordinates/test_topology.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,168 copying build/lib/MDAnalysisTests/data/coordinates/README.md -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,170 copying build/lib/MDAnalysisTests/data/coordinates/test.gro.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,171 copying build/lib/MDAnalysisTests/data/coordinates/test.xtc -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,173 copying build/lib/MDAnalysisTests/data/coordinates/create_data.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,175 copying build/lib/MDAnalysisTests/data/coordinates/create_h5md_data.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,179 copying build/lib/MDAnalysisTests/data/coordinates/test.tng -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,181 copying build/lib/MDAnalysisTests/data/coordinates/test.txyz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,183 copying build/lib/MDAnalysisTests/data/coordinates/test.xyz.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,184 copying build/lib/MDAnalysisTests/data/coordinates/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,186 copying build/lib/MDAnalysisTests/data/coordinates/test.h5md -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,190 copying build/lib/MDAnalysisTests/data/coordinates/test.dcd -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,191 copying build/lib/MDAnalysisTests/data/coordinates/test.xyz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,193 copying build/lib/MDAnalysisTests/data/coordinates/test.trr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/coordinates 2025-10-18T00:55:44,195 copying build/lib/MDAnalysisTests/data/5a7u.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,198 copying build/lib/MDAnalysisTests/data/adk_closed_NAMD.psf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,228 copying build/lib/MDAnalysisTests/data/namd_cgenff.psf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,232 copying build/lib/MDAnalysisTests/data/parmed_ala3.psf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,234 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/merge 2025-10-18T00:55:44,236 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/merge/2zmm 2025-10-18T00:55:44,237 copying build/lib/MDAnalysisTests/data/merge/2zmm/water.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/merge/2zmm 2025-10-18T00:55:44,239 copying build/lib/MDAnalysisTests/data/merge/2zmm/protein.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/merge/2zmm 2025-10-18T00:55:44,246 copying build/lib/MDAnalysisTests/data/merge/2zmm/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/merge/2zmm 2025-10-18T00:55:44,248 copying build/lib/MDAnalysisTests/data/merge/2zmm/ligand.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/merge/2zmm 2025-10-18T00:55:44,249 copying build/lib/MDAnalysisTests/data/merge/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/merge 2025-10-18T00:55:44,251 copying build/lib/MDAnalysisTests/data/adk_open.pqr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,258 copying build/lib/MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8_frames10to79.dat -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,260 copying build/lib/MDAnalysisTests/data/align.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,262 copying build/lib/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,264 copying build/lib/MDAnalysisTests/data/1grm_single.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,267 copying build/lib/MDAnalysisTests/data/two_water_gro_multiframe.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,269 copying build/lib/MDAnalysisTests/data/adk_closed.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,275 copying build/lib/MDAnalysisTests/data/argon_npt_compressed_uneven.tng -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,281 copying build/lib/MDAnalysisTests/data/charges.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,282 copying build/lib/MDAnalysisTests/data/empty_atom.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,284 copying build/lib/MDAnalysisTests/data/1ubq-less-optional.mmtf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,286 copying build/lib/MDAnalysisTests/data/example_bonds.gsd -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,289 copying build/lib/MDAnalysisTests/data/A6PA6_alpha.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,292 copying build/lib/MDAnalysisTests/data/bigbox.gro.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,336 copying build/lib/MDAnalysisTests/data/elements.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,339 copying build/lib/MDAnalysisTests/data/chainIDnewres.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,341 copying build/lib/MDAnalysisTests/data/trz_psf.psf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,364 copying build/lib/MDAnalysisTests/data/cu_malformed.h5md -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,372 copying build/lib/MDAnalysisTests/data/mini.xyz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,374 copying build/lib/MDAnalysisTests/data/spce.itp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,376 copying build/lib/MDAnalysisTests/data/adk_oplsaa_GLY_rama.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,378 copying build/lib/MDAnalysisTests/data/adk_open_10res.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,380 copying build/lib/MDAnalysisTests/data/cobrotoxin.xtc -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,386 copying build/lib/MDAnalysisTests/data/tip125_tric_C36.dcd -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,389 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/contacts 2025-10-18T00:55:44,390 copying build/lib/MDAnalysisTests/data/contacts/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/contacts 2025-10-18T00:55:44,392 copying build/lib/MDAnalysisTests/data/contacts/villin_folded.gro.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/contacts 2025-10-18T00:55:44,396 copying build/lib/MDAnalysisTests/data/contacts/villin_unfolded.gro.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/contacts 2025-10-18T00:55:44,400 copying build/lib/MDAnalysisTests/data/contacts/2F4K_qlist5_remap.dat -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/contacts 2025-10-18T00:55:44,402 copying build/lib/MDAnalysisTests/data/cobrotoxin_protein_forces.xvg.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,405 copying build/lib/MDAnalysisTests/data/missing_atomname.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,407 copying build/lib/MDAnalysisTests/data/namd_cgenff.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,409 copying build/lib/MDAnalysisTests/data/chainIDrepeat.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,411 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/dlpoly 2025-10-18T00:55:44,412 copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_order -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dlpoly 2025-10-18T00:55:44,414 copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_minimal_cell -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dlpoly 2025-10-18T00:55:44,416 copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG_minimal -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dlpoly 2025-10-18T00:55:44,418 copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dlpoly 2025-10-18T00:55:44,421 copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG_order -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dlpoly 2025-10-18T00:55:44,423 copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_minimal -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dlpoly 2025-10-18T00:55:44,425 copying build/lib/MDAnalysisTests/data/dlpoly/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dlpoly 2025-10-18T00:55:44,427 copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dlpoly 2025-10-18T00:55:44,434 copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_classic -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/dlpoly 2025-10-18T00:55:44,436 copying build/lib/MDAnalysisTests/data/nmr_neopetrosiamide.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,456 copying build/lib/MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,464 copying build/lib/MDAnalysisTests/data/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,466 copying build/lib/MDAnalysisTests/data/aux_edr.xtc -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,477 copying build/lib/MDAnalysisTests/data/adk_oplsaa_rama.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,480 copying build/lib/MDAnalysisTests/data/itp_nomass.itp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,485 copying build/lib/MDAnalysisTests/data/adk_oplsaa.xtc -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,510 copying build/lib/MDAnalysisTests/data/19hc.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,516 copying build/lib/MDAnalysisTests/data/atomtypes.itp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,518 copying build/lib/MDAnalysisTests/data/plength.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,532 copying build/lib/MDAnalysisTests/data/adk_open.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,538 copying build/lib/MDAnalysisTests/data/surface.trr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,541 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/windows 2025-10-18T00:55:44,542 copying build/lib/MDAnalysisTests/data/windows/WIN_nmr_neopetrosiamide.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/windows 2025-10-18T00:55:44,557 copying build/lib/MDAnalysisTests/data/windows/README.md -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/windows 2025-10-18T00:55:44,559 copying build/lib/MDAnalysisTests/data/windows/WIN_HISTORY -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/windows 2025-10-18T00:55:44,564 copying build/lib/MDAnalysisTests/data/windows/WIN_wat.lammpstrj -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/windows 2025-10-18T00:55:44,567 copying build/lib/MDAnalysisTests/data/windows/WIN_ache.mdcrd -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/windows 2025-10-18T00:55:44,570 copying build/lib/MDAnalysisTests/data/windows/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/windows 2025-10-18T00:55:44,572 copying build/lib/MDAnalysisTests/data/windows/WIN_test.arc -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/windows 2025-10-18T00:55:44,574 copying build/lib/MDAnalysisTests/data/5digitResid.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,576 copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,578 copying build/lib/MDAnalysisTests/data/adk_closed.dms -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,587 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/gromos11 2025-10-18T00:55:44,588 copying build/lib/MDAnalysisTests/data/gromos11/gromos11_truncOcta_vac.trc.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromos11 2025-10-18T00:55:44,590 copying build/lib/MDAnalysisTests/data/gromos11/gromos11_traj_solv.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromos11 2025-10-18T00:55:44,594 copying build/lib/MDAnalysisTests/data/gromos11/gromos11_traj_vac_1_whitespace.trc.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromos11 2025-10-18T00:55:44,596 copying build/lib/MDAnalysisTests/data/gromos11/gromos11_triclinic_solv.trc.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromos11 2025-10-18T00:55:44,600 copying build/lib/MDAnalysisTests/data/gromos11/gromos11_traj_solv.trc.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromos11 2025-10-18T00:55:44,605 copying build/lib/MDAnalysisTests/data/gromos11/gromos11_traj_vac_2.trc.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromos11 2025-10-18T00:55:44,607 copying build/lib/MDAnalysisTests/data/gromos11/gromos11_traj_vac_1_missing_pos.trc.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromos11 2025-10-18T00:55:44,610 copying build/lib/MDAnalysisTests/data/gromos11/gromos11_genbox_origin.trc.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromos11 2025-10-18T00:55:44,612 copying build/lib/MDAnalysisTests/data/gromos11/gromos11_cluster_vac.trj.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromos11 2025-10-18T00:55:44,614 copying build/lib/MDAnalysisTests/data/gromos11/gromos11_traj_vac_1.trc.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromos11 2025-10-18T00:55:44,617 copying build/lib/MDAnalysisTests/data/gromos11/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromos11 2025-10-18T00:55:44,618 copying build/lib/MDAnalysisTests/data/gromos11/gromos11_genbox_euler.trc.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromos11 2025-10-18T00:55:44,620 copying build/lib/MDAnalysisTests/data/gromos11/gromos11_traj_vac.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromos11 2025-10-18T00:55:44,622 copying build/lib/MDAnalysisTests/data/gromos11/gromos11_empty.trc -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromos11 2025-10-18T00:55:44,624 copying build/lib/MDAnalysisTests/data/gromos11/gromos11_traj_vac_1_extra_pos.trc.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromos11 2025-10-18T00:55:44,627 copying build/lib/MDAnalysisTests/data/unordered_res.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,630 copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,633 copying build/lib/MDAnalysisTests/data/huge_box.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,635 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/gromacs 2025-10-18T00:55:44,637 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff 2025-10-18T00:55:44,639 copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ff_dum.itp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromacs/gromos54a7_edited.ff 2025-10-18T00:55:44,641 copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ions.itp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromacs/gromos54a7_edited.ff 2025-10-18T00:55:44,643 copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromacs/gromos54a7_edited.ff 2025-10-18T00:55:44,646 copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromacs/gromos54a7_edited.ff 2025-10-18T00:55:44,648 copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/spc.itp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromacs/gromos54a7_edited.ff 2025-10-18T00:55:44,650 copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromacs/gromos54a7_edited.ff 2025-10-18T00:55:44,652 copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromacs/gromos54a7_edited.ff 2025-10-18T00:55:44,657 copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/test.itp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromacs/gromos54a7_edited.ff 2025-10-18T00:55:44,659 copying build/lib/MDAnalysisTests/data/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/gromacs 2025-10-18T00:55:44,661 copying build/lib/MDAnalysisTests/data/nosegid.psf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,664 copying build/lib/MDAnalysisTests/data/adk_oplsaa.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,702 copying build/lib/MDAnalysisTests/data/gromacs_ala10.itp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,705 copying build/lib/MDAnalysisTests/data/CONECT2TER.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,707 copying build/lib/MDAnalysisTests/data/test.fasta -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,709 copying build/lib/MDAnalysisTests/data/adk.psf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,731 copying build/lib/MDAnalysisTests/data/tyrosol.pdbqt.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,733 copying build/lib/MDAnalysisTests/data/adk_oplsaa_dihedral.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,735 copying build/lib/MDAnalysisTests/data/make_whole.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:44,737 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/tprs 2025-10-18T00:55:44,738 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2024.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:44,748 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:44,759 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:44,770 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:44,786 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,788 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,791 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_3.3.4.top -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,793 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,796 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,799 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,801 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2024_4.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,804 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_3.3.4.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,808 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,811 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,814 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.mdp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,816 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,818 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,820 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,823 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2020-beta2.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,826 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,828 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.mdp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,830 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,832 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.top -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,835 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2025_0.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,837 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,840 copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/all_bonded 2025-10-18T00:55:44,842 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:44,856 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:44,871 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:44,882 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:44,895 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:44,906 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:44,917 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:44,928 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2025_0.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:44,939 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:44,950 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:44,962 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:44,973 copying build/lib/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,006 copying build/lib/MDAnalysisTests/data/tprs/ala_nnpot_gmx_2025_0.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,008 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,019 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,030 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,041 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,052 copying build/lib/MDAnalysisTests/data/tprs/drew_gmx_4.5.5.double.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,073 copying build/lib/MDAnalysisTests/data/tprs/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,075 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2020-beta2.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,107 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,118 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2024_4.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,129 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,138 copying build/lib/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,186 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,197 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,208 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,209 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2025_0.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,212 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,215 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/dummy_2020.mdp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,217 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/dummy.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,219 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,221 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,224 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024_4.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,227 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,230 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,232 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/dummy_2018.mdp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,234 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/dummy_4.0.7.mdp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,236 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,239 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/dummy_4.0.7.top -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,242 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,244 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/dummy_2021.top -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,246 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,249 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/dummy.top -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,252 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/dummy_2021.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,254 copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs/virtual_sites 2025-10-18T00:55:45,257 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,271 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,285 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,297 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,307 copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/tprs 2025-10-18T00:55:45,317 copying build/lib/MDAnalysisTests/data/gromacs_ala10.top -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,319 copying build/lib/MDAnalysisTests/data/grovels.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,321 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/Amber 2025-10-18T00:55:45,323 copying build/lib/MDAnalysisTests/data/Amber/test.inpcrd -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,324 copying build/lib/MDAnalysisTests/data/Amber/ache.mdcrd.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,327 copying build/lib/MDAnalysisTests/data/Amber/ace_tip3p.nc -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,337 copying build/lib/MDAnalysisTests/data/Amber/bala.trj -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,367 copying build/lib/MDAnalysisTests/data/Amber/posfor.ncdf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,371 copying build/lib/MDAnalysisTests/data/Amber/bala.ncdf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,389 copying build/lib/MDAnalysisTests/data/Amber/anti.top -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,415 copying build/lib/MDAnalysisTests/data/Amber/ache_chainid.prmtop.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,418 copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.nc -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,420 copying build/lib/MDAnalysisTests/data/Amber/parmed_ala2_solv.parm7 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,429 copying build/lib/MDAnalysisTests/data/Amber/bala.prmtop -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,438 copying build/lib/MDAnalysisTests/data/Amber/capped-ala.prmtop -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,452 copying build/lib/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,455 copying build/lib/MDAnalysisTests/data/Amber/chitosan.prmtop -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,459 copying build/lib/MDAnalysisTests/data/Amber/parmed_fad.prmtop -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,463 copying build/lib/MDAnalysisTests/data/Amber/capped-ala.mdcrd.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,476 copying build/lib/MDAnalysisTests/data/Amber/cpptraj_traj.nc -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,478 copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error1.parm7 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,480 copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error3.parm7 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,481 copying build/lib/MDAnalysisTests/data/Amber/posfor.top -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,487 copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error2.parm7 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,488 copying build/lib/MDAnalysisTests/data/Amber/ace_tip3p.parm7 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,494 copying build/lib/MDAnalysisTests/data/Amber/ache.mdcrd -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,498 copying build/lib/MDAnalysisTests/data/Amber/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,499 copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error4.parm7 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,502 copying build/lib/MDAnalysisTests/data/Amber/cpptraj_traj.prmtop -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,505 copying build/lib/MDAnalysisTests/data/Amber/ala.ff19SB.OPC.parm7.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,508 copying build/lib/MDAnalysisTests/data/Amber/ache_chainid.error5.prmtop.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,511 copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.parm7 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,513 copying build/lib/MDAnalysisTests/data/Amber/parmed_ala2_solv.rst7 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,517 copying build/lib/MDAnalysisTests/data/Amber/anti_md1.mdcrd.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,537 copying build/lib/MDAnalysisTests/data/Amber/ache.prmtop -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,541 copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.negative.parm7 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,544 copying build/lib/MDAnalysisTests/data/Amber/tz2.truncoct.nc -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/Amber 2025-10-18T00:55:45,558 copying build/lib/MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,561 copying build/lib/MDAnalysisTests/data/xl_serial.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,563 copying build/lib/MDAnalysisTests/data/1hvr.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,569 copying build/lib/MDAnalysisTests/data/adk_open.coor -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,573 copying build/lib/MDAnalysisTests/data/tip125_tric_C36.psf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,577 copying build/lib/MDAnalysisTests/data/test.xvg -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,579 copying build/lib/MDAnalysisTests/data/6QYR.mmtf.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,582 copying build/lib/MDAnalysisTests/data/adk_dims.dcd -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,653 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/analysis 2025-10-18T00:55:45,654 copying build/lib/MDAnalysisTests/data/analysis/1k5i_c36.psf.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/analysis 2025-10-18T00:55:45,662 creating build/bdist.linux-armv7l/wheel/MDAnalysisTests/data/analysis/msd 2025-10-18T00:55:45,663 copying build/lib/MDAnalysisTests/data/analysis/msd/test_non_linear.dump.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/analysis/msd 2025-10-18T00:55:45,665 copying build/lib/MDAnalysisTests/data/analysis/align_bound.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/analysis 2025-10-18T00:55:45,667 copying build/lib/MDAnalysisTests/data/analysis/YiiP_lipids.gro.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/analysis 2025-10-18T00:55:45,684 copying build/lib/MDAnalysisTests/data/analysis/align_unbound.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/analysis 2025-10-18T00:55:45,686 copying build/lib/MDAnalysisTests/data/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/analysis 2025-10-18T00:55:45,687 copying build/lib/MDAnalysisTests/data/analysis/1k5i_c36.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/analysis 2025-10-18T00:55:45,693 copying build/lib/MDAnalysisTests/data/analysis/YiiP_lipids.xtc -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data/analysis 2025-10-18T00:55:45,707 copying build/lib/MDAnalysisTests/data/1a2c_ins_code.psf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,712 copying build/lib/MDAnalysisTests/data/watdyn.psf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,714 copying build/lib/MDAnalysisTests/data/cobrotoxin.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,739 copying build/lib/MDAnalysisTests/data/4x8u.pdbx -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,741 copying build/lib/MDAnalysisTests/data/2r9r-1b.xyz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,749 copying build/lib/MDAnalysisTests/data/test_lowf.xvg -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,751 copying build/lib/MDAnalysisTests/data/sameresid_diffresname.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,753 copying build/lib/MDAnalysisTests/data/water_methane_acetic-acid_ammonia.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,755 copying build/lib/MDAnalysisTests/data/nucl_res.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,757 copying build/lib/MDAnalysisTests/data/adk_oplsaa.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,790 copying build/lib/MDAnalysisTests/data/fhiaims.in -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,792 copying build/lib/MDAnalysisTests/data/fullerene.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,794 copying build/lib/MDAnalysisTests/data/adk_oplsaa.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,845 copying build/lib/MDAnalysisTests/data/incomplete.pdb -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,847 copying build/lib/MDAnalysisTests/data/tip5p.itp -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,849 copying build/lib/MDAnalysisTests/data/cobrotoxin_2024_4.tpr -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,905 copying build/lib/MDAnalysisTests/data/aux_edr_raw.txt -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,909 copying build/lib/MDAnalysisTests/data/adk_gbis_tmd-fast1_NAMD.dcd -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,971 copying build/lib/MDAnalysisTests/data/SiN_tric_namd.psf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,985 copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb.gz -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,988 copying build/lib/MDAnalysisTests/data/adk_closed_no_segid.dms -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,996 copying build/lib/MDAnalysisTests/data/sample_velocity_file.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:45,998 copying build/lib/MDAnalysisTests/data/molecule.sdf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:46,001 copying build/lib/MDAnalysisTests/data/dppc_vesicle_hg.gro -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:46,004 copying build/lib/MDAnalysisTests/data/1grm_elNemo_mode7.pdb.bz2 -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:46,007 copying build/lib/MDAnalysisTests/data/3NJW-onlyrequired.mmtf -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests/data 2025-10-18T00:55:46,010 copying build/lib/MDAnalysisTests/dummy.py -> build/bdist.linux-armv7l/wheel/./MDAnalysisTests 2025-10-18T00:55:46,012 running install_egg_info 2025-10-18T00:55:46,018 Copying MDAnalysisTests.egg-info to build/bdist.linux-armv7l/wheel/./MDAnalysisTests-2.10.0-py3.11.egg-info 2025-10-18T00:55:46,033 running install_scripts 2025-10-18T00:55:46,052 creating build/bdist.linux-armv7l/wheel/mdanalysistests-2.10.0.dist-info/WHEEL 2025-10-18T00:55:46,055 creating '/tmp/pip-wheel-tochixfw/.tmp-ydkhnklx/mdanalysistests-2.10.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-10-18T00:55:46,058 adding 'MDAnalysisTests/__init__.py' 2025-10-18T00:55:46,062 adding 'MDAnalysisTests/datafiles.py' 2025-10-18T00:55:46,065 adding 'MDAnalysisTests/dummy.py' 2025-10-18T00:55:46,067 adding 'MDAnalysisTests/test_api.py' 2025-10-18T00:55:46,069 adding 'MDAnalysisTests/util.py' 2025-10-18T00:55:46,072 adding 'MDAnalysisTests/analysis/__init__.py' 2025-10-18T00:55:46,074 adding 'MDAnalysisTests/analysis/conftest.py' 2025-10-18T00:55:46,078 adding 'MDAnalysisTests/analysis/test_align.py' 2025-10-18T00:55:46,080 adding 'MDAnalysisTests/analysis/test_atomicdistances.py' 2025-10-18T00:55:46,082 adding 'MDAnalysisTests/analysis/test_backends.py' 2025-10-18T00:55:46,085 adding 'MDAnalysisTests/analysis/test_base.py' 2025-10-18T00:55:46,087 adding 'MDAnalysisTests/analysis/test_bat.py' 2025-10-18T00:55:46,090 adding 'MDAnalysisTests/analysis/test_contacts.py' 2025-10-18T00:55:46,091 adding 'MDAnalysisTests/analysis/test_data.py' 2025-10-18T00:55:46,094 adding 'MDAnalysisTests/analysis/test_density.py' 2025-10-18T00:55:46,096 adding 'MDAnalysisTests/analysis/test_dielectric.py' 2025-10-18T00:55:46,098 adding 'MDAnalysisTests/analysis/test_diffusionmap.py' 2025-10-18T00:55:46,100 adding 'MDAnalysisTests/analysis/test_dihedrals.py' 2025-10-18T00:55:46,102 adding 'MDAnalysisTests/analysis/test_distances.py' 2025-10-18T00:55:46,104 adding 'MDAnalysisTests/analysis/test_dssp.py' 2025-10-18T00:55:46,108 adding 'MDAnalysisTests/analysis/test_encore.py' 2025-10-18T00:55:46,110 adding 'MDAnalysisTests/analysis/test_gnm.py' 2025-10-18T00:55:46,113 adding 'MDAnalysisTests/analysis/test_helix_analysis.py' 2025-10-18T00:55:46,115 adding 'MDAnalysisTests/analysis/test_hole2.py' 2025-10-18T00:55:46,117 adding 'MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py' 2025-10-18T00:55:46,119 adding 'MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py' 2025-10-18T00:55:46,122 adding 'MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py' 2025-10-18T00:55:46,125 adding 'MDAnalysisTests/analysis/test_leaflet.py' 2025-10-18T00:55:46,127 adding 'MDAnalysisTests/analysis/test_lineardensity.py' 2025-10-18T00:55:46,132 adding 'MDAnalysisTests/analysis/test_msd.py' 2025-10-18T00:55:46,135 adding 'MDAnalysisTests/analysis/test_nucleicacids.py' 2025-10-18T00:55:46,136 adding 'MDAnalysisTests/analysis/test_nuclinfo.py' 2025-10-18T00:55:46,138 adding 'MDAnalysisTests/analysis/test_pca.py' 2025-10-18T00:55:46,139 adding 'MDAnalysisTests/analysis/test_persistencelength.py' 2025-10-18T00:55:46,141 adding 'MDAnalysisTests/analysis/test_psa.py' 2025-10-18T00:55:46,142 adding 'MDAnalysisTests/analysis/test_rdf.py' 2025-10-18T00:55:46,144 adding 'MDAnalysisTests/analysis/test_rdf_s.py' 2025-10-18T00:55:46,145 adding 'MDAnalysisTests/analysis/test_results.py' 2025-10-18T00:55:46,147 adding 'MDAnalysisTests/analysis/test_rms.py' 2025-10-18T00:55:46,148 adding 'MDAnalysisTests/analysis/test_waterdynamics.py' 2025-10-18T00:55:46,151 adding 'MDAnalysisTests/analysis/test_wbridge.py' 2025-10-18T00:55:46,153 adding 'MDAnalysisTests/auxiliary/__init__.py' 2025-10-18T00:55:46,155 adding 'MDAnalysisTests/auxiliary/base.py' 2025-10-18T00:55:46,157 adding 'MDAnalysisTests/auxiliary/test_core.py' 2025-10-18T00:55:46,159 adding 'MDAnalysisTests/auxiliary/test_edr.py' 2025-10-18T00:55:46,161 adding 'MDAnalysisTests/auxiliary/test_xvg.py' 2025-10-18T00:55:46,162 adding 'MDAnalysisTests/converters/__init__.py' 2025-10-18T00:55:46,163 adding 'MDAnalysisTests/converters/test_base.py' 2025-10-18T00:55:46,165 adding 'MDAnalysisTests/converters/test_openmm.py' 2025-10-18T00:55:46,167 adding 'MDAnalysisTests/converters/test_openmm_parser.py' 2025-10-18T00:55:46,169 adding 'MDAnalysisTests/converters/test_parmed.py' 2025-10-18T00:55:46,170 adding 'MDAnalysisTests/converters/test_parmed_parser.py' 2025-10-18T00:55:46,174 adding 'MDAnalysisTests/converters/test_rdkit.py' 2025-10-18T00:55:46,176 adding 'MDAnalysisTests/converters/test_rdkit_parser.py' 2025-10-18T00:55:46,178 adding 'MDAnalysisTests/coordinates/__init__.py' 2025-10-18T00:55:46,182 adding 'MDAnalysisTests/coordinates/base.py' 2025-10-18T00:55:46,183 adding 'MDAnalysisTests/coordinates/reference.py' 2025-10-18T00:55:46,185 adding 'MDAnalysisTests/coordinates/test_amber_inpcrd.py' 2025-10-18T00:55:46,187 adding 'MDAnalysisTests/coordinates/test_chainreader.py' 2025-10-18T00:55:46,189 adding 'MDAnalysisTests/coordinates/test_chemfiles.py' 2025-10-18T00:55:46,191 adding 'MDAnalysisTests/coordinates/test_copying.py' 2025-10-18T00:55:46,193 adding 'MDAnalysisTests/coordinates/test_crd.py' 2025-10-18T00:55:46,195 adding 'MDAnalysisTests/coordinates/test_dcd.py' 2025-10-18T00:55:46,197 adding 'MDAnalysisTests/coordinates/test_dlpoly.py' 2025-10-18T00:55:46,198 adding 'MDAnalysisTests/coordinates/test_dms.py' 2025-10-18T00:55:46,200 adding 'MDAnalysisTests/coordinates/test_fhiaims.py' 2025-10-18T00:55:46,201 adding 'MDAnalysisTests/coordinates/test_gms.py' 2025-10-18T00:55:46,203 adding 'MDAnalysisTests/coordinates/test_gro.py' 2025-10-18T00:55:46,205 adding 'MDAnalysisTests/coordinates/test_gsd.py' 2025-10-18T00:55:46,208 adding 'MDAnalysisTests/coordinates/test_h5md.py' 2025-10-18T00:55:46,211 adding 'MDAnalysisTests/coordinates/test_imd.py' 2025-10-18T00:55:46,214 adding 'MDAnalysisTests/coordinates/test_lammps.py' 2025-10-18T00:55:46,217 adding 'MDAnalysisTests/coordinates/test_memory.py' 2025-10-18T00:55:46,218 adding 'MDAnalysisTests/coordinates/test_mmtf.py' 2025-10-18T00:55:46,220 adding 'MDAnalysisTests/coordinates/test_mol2.py' 2025-10-18T00:55:46,221 adding 'MDAnalysisTests/coordinates/test_namdbin.py' 2025-10-18T00:55:46,226 adding 'MDAnalysisTests/coordinates/test_netcdf.py' 2025-10-18T00:55:46,227 adding 'MDAnalysisTests/coordinates/test_null.py' 2025-10-18T00:55:46,232 adding 'MDAnalysisTests/coordinates/test_pdb.py' 2025-10-18T00:55:46,234 adding 'MDAnalysisTests/coordinates/test_pdbqt.py' 2025-10-18T00:55:46,236 adding 'MDAnalysisTests/coordinates/test_pqr.py' 2025-10-18T00:55:46,238 adding 'MDAnalysisTests/coordinates/test_reader_api.py' 2025-10-18T00:55:46,241 adding 'MDAnalysisTests/coordinates/test_timestep_api.py' 2025-10-18T00:55:46,243 adding 'MDAnalysisTests/coordinates/test_tng.py' 2025-10-18T00:55:46,245 adding 'MDAnalysisTests/coordinates/test_tpr.py' 2025-10-18T00:55:46,247 adding 'MDAnalysisTests/coordinates/test_trc.py' 2025-10-18T00:55:46,248 adding 'MDAnalysisTests/coordinates/test_trj.py' 2025-10-18T00:55:46,250 adding 'MDAnalysisTests/coordinates/test_trz.py' 2025-10-18T00:55:46,251 adding 'MDAnalysisTests/coordinates/test_txyz.py' 2025-10-18T00:55:46,253 adding 'MDAnalysisTests/coordinates/test_windows.py' 2025-10-18T00:55:46,254 adding 'MDAnalysisTests/coordinates/test_writer_api.py' 2025-10-18T00:55:46,255 adding 'MDAnalysisTests/coordinates/test_writer_registration.py' 2025-10-18T00:55:46,259 adding 'MDAnalysisTests/coordinates/test_xdr.py' 2025-10-18T00:55:46,261 adding 'MDAnalysisTests/coordinates/test_xyz.py' 2025-10-18T00:55:46,263 adding 'MDAnalysisTests/core/__init__.py' 2025-10-18T00:55:46,264 adding 'MDAnalysisTests/core/test_accessors.py' 2025-10-18T00:55:46,266 adding 'MDAnalysisTests/core/test_accumulate.py' 2025-10-18T00:55:46,267 adding 'MDAnalysisTests/core/test_atom.py' 2025-10-18T00:55:46,274 adding 'MDAnalysisTests/core/test_atomgroup.py' 2025-10-18T00:55:46,280 adding 'MDAnalysisTests/core/test_atomselections.py' 2025-10-18T00:55:46,281 adding 'MDAnalysisTests/core/test_copying.py' 2025-10-18T00:55:46,283 adding 'MDAnalysisTests/core/test_fragments.py' 2025-10-18T00:55:46,286 adding 'MDAnalysisTests/core/test_group_traj_access.py' 2025-10-18T00:55:46,294 adding 'MDAnalysisTests/core/test_groups.py' 2025-10-18T00:55:46,296 adding 'MDAnalysisTests/core/test_index_dtype.py' 2025-10-18T00:55:46,298 adding 'MDAnalysisTests/core/test_requires.py' 2025-10-18T00:55:46,299 adding 'MDAnalysisTests/core/test_residue.py' 2025-10-18T00:55:46,302 adding 'MDAnalysisTests/core/test_residuegroup.py' 2025-10-18T00:55:46,304 adding 'MDAnalysisTests/core/test_segment.py' 2025-10-18T00:55:46,306 adding 'MDAnalysisTests/core/test_segmentgroup.py' 2025-10-18T00:55:46,309 adding 'MDAnalysisTests/core/test_topology.py' 2025-10-18T00:55:46,313 adding 'MDAnalysisTests/core/test_topologyattrs.py' 2025-10-18T00:55:46,317 adding 'MDAnalysisTests/core/test_topologyobjects.py' 2025-10-18T00:55:46,326 adding 'MDAnalysisTests/core/test_universe.py' 2025-10-18T00:55:46,330 adding 'MDAnalysisTests/core/test_unwrap.py' 2025-10-18T00:55:46,332 adding 'MDAnalysisTests/core/test_updating_atomgroup.py' 2025-10-18T00:55:46,335 adding 'MDAnalysisTests/core/test_wrap.py' 2025-10-18T00:55:46,339 adding 'MDAnalysisTests/core/util.py' 2025-10-18T00:55:46,346 adding 'MDAnalysisTests/data/173D.mmtf' 2025-10-18T00:55:46,383 adding 'MDAnalysisTests/data/19hc.pdb.gz' 2025-10-18T00:55:46,455 adding 'MDAnalysisTests/data/1A2C.pqr' 2025-10-18T00:55:46,468 adding 'MDAnalysisTests/data/1a28.pdb.gz' 2025-10-18T00:55:46,483 adding 'MDAnalysisTests/data/1a2c_ins_code.psf' 2025-10-18T00:55:46,487 adding 'MDAnalysisTests/data/1grm_elNemo_mode7.pdb.bz2' 2025-10-18T00:55:46,491 adding 'MDAnalysisTests/data/1grm_single.pdb' 2025-10-18T00:55:46,521 adding 'MDAnalysisTests/data/1hvr.pdb' 2025-10-18T00:55:46,527 adding 'MDAnalysisTests/data/1osm.pdb.gz' 2025-10-18T00:55:46,529 adding 'MDAnalysisTests/data/1ubq-less-optional.mmtf' 2025-10-18T00:55:46,559 adding 'MDAnalysisTests/data/2r9r-1b.psf' 2025-10-18T00:55:46,678 adding 'MDAnalysisTests/data/2r9r-1b.xyz' 2025-10-18T00:55:46,690 adding 'MDAnalysisTests/data/2r9r-1b.xyz.bz2' 2025-10-18T00:55:46,692 adding 'MDAnalysisTests/data/3NJW-onlyrequired.mmtf' 2025-10-18T00:55:46,726 adding 'MDAnalysisTests/data/4E43.pdb' 2025-10-18T00:55:46,730 adding 'MDAnalysisTests/data/4x8u.pdbx' 2025-10-18T00:55:46,731 adding 'MDAnalysisTests/data/5KIH.mmtf.gz' 2025-10-18T00:55:46,739 adding 'MDAnalysisTests/data/5a7u.pdb' 2025-10-18T00:55:46,741 adding 'MDAnalysisTests/data/5digitResid.pdb' 2025-10-18T00:55:46,743 adding 'MDAnalysisTests/data/6QYR.mmtf.gz' 2025-10-18T00:55:46,761 adding 'MDAnalysisTests/data/6msm.pdb.bz2' 2025-10-18T00:55:46,765 adding 'MDAnalysisTests/data/A6PA6_alpha.pdb' 2025-10-18T00:55:46,767 adding 'MDAnalysisTests/data/C12x64.xml.bz2' 2025-10-18T00:55:46,769 adding 'MDAnalysisTests/data/CONECT2TER.pdb' 2025-10-18T00:55:46,771 adding 'MDAnalysisTests/data/RANDOM_WALK_TOPO.pdb' 2025-10-18T00:55:46,773 adding 'MDAnalysisTests/data/SINGLECONECT.pdb' 2025-10-18T00:55:46,783 adding 'MDAnalysisTests/data/SiN_tric_namd.dcd' 2025-10-18T00:55:46,852 adding 'MDAnalysisTests/data/SiN_tric_namd.psf' 2025-10-18T00:55:46,858 adding 'MDAnalysisTests/data/__init__.py' 2025-10-18T00:55:46,947 adding 'MDAnalysisTests/data/adk.psf' 2025-10-18T00:55:47,003 adding 'MDAnalysisTests/data/adk_closed.dms' 2025-10-18T00:55:47,045 adding 'MDAnalysisTests/data/adk_closed.pdb' 2025-10-18T00:55:47,140 adding 'MDAnalysisTests/data/adk_closed_NAMD.psf' 2025-10-18T00:55:47,197 adding 'MDAnalysisTests/data/adk_closed_domains.dms' 2025-10-18T00:55:47,251 adding 'MDAnalysisTests/data/adk_closed_no_segid.dms' 2025-10-18T00:55:47,830 adding 'MDAnalysisTests/data/adk_dims.dcd' 2025-10-18T00:55:48,533 adding 'MDAnalysisTests/data/adk_dims2.dcd' 2025-10-18T00:55:49,168 adding 'MDAnalysisTests/data/adk_gbis_tmd-fast1_NAMD.dcd' 2025-10-18T00:55:49,212 adding 'MDAnalysisTests/data/adk_notop.psf' 2025-10-18T00:55:49,234 adding 'MDAnalysisTests/data/adk_notop_BAD.psf' 2025-10-18T00:55:49,262 adding 'MDAnalysisTests/data/adk_open.coor' 2025-10-18T00:55:49,307 adding 'MDAnalysisTests/data/adk_open.crd' 2025-10-18T00:55:49,347 adding 'MDAnalysisTests/data/adk_open.pdb' 2025-10-18T00:55:49,390 adding 'MDAnalysisTests/data/adk_open.pqr' 2025-10-18T00:55:49,394 adding 'MDAnalysisTests/data/adk_open_10res.pdb' 2025-10-18T00:55:49,961 adding 'MDAnalysisTests/data/adk_oplsaa.gro' 2025-10-18T00:55:50,470 adding 'MDAnalysisTests/data/adk_oplsaa.pdb' 2025-10-18T00:55:50,827 adding 'MDAnalysisTests/data/adk_oplsaa.tpr' 2025-10-18T00:55:52,758 adding 'MDAnalysisTests/data/adk_oplsaa.trr' 2025-10-18T00:55:53,004 adding 'MDAnalysisTests/data/adk_oplsaa.xtc' 2025-10-18T00:55:53,016 adding 'MDAnalysisTests/data/adk_oplsaa_CA_rmsf.npy' 2025-10-18T00:55:53,018 adding 'MDAnalysisTests/data/adk_oplsaa_GLY_rama.npy' 2025-10-18T00:55:53,019 adding 'MDAnalysisTests/data/adk_oplsaa_LYS_janin.npy' 2025-10-18T00:55:53,021 adding 'MDAnalysisTests/data/adk_oplsaa_dihedral.npy' 2025-10-18T00:55:53,022 adding 'MDAnalysisTests/data/adk_oplsaa_dihedral_list.npy' 2025-10-18T00:55:53,026 adding 'MDAnalysisTests/data/adk_oplsaa_janin.npy' 2025-10-18T00:55:53,031 adding 'MDAnalysisTests/data/adk_oplsaa_rama.npy' 2025-10-18T00:55:53,032 adding 'MDAnalysisTests/data/align.pdb' 2025-10-18T00:55:53,035 adding 'MDAnalysisTests/data/argon_npt_compressed.gro.gz' 2025-10-18T00:55:53,080 adding 'MDAnalysisTests/data/argon_npt_compressed.tng' 2025-10-18T00:55:53,103 adding 'MDAnalysisTests/data/argon_npt_compressed_uneven.tng' 2025-10-18T00:55:53,195 adding 'MDAnalysisTests/data/argon_npt_compressed_vels_forces.tng' 2025-10-18T00:55:53,201 adding 'MDAnalysisTests/data/atomtypes.itp' 2025-10-18T00:55:53,202 adding 'MDAnalysisTests/data/atomtypes_charge.itp' 2025-10-18T00:55:53,429 adding 'MDAnalysisTests/data/aux_edr.tpr' 2025-10-18T00:55:53,490 adding 'MDAnalysisTests/data/aux_edr.xtc' 2025-10-18T00:55:53,495 adding 'MDAnalysisTests/data/aux_edr_raw.txt' 2025-10-18T00:55:53,497 adding 'MDAnalysisTests/data/bad_num_col.xvg' 2025-10-18T00:55:53,498 adding 'MDAnalysisTests/data/bad_top.top' 2025-10-18T00:55:53,651 adding 'MDAnalysisTests/data/bigbox.gro.bz2' 2025-10-18T00:55:53,660 adding 'MDAnalysisTests/data/chainIDnewres.pdb.gz' 2025-10-18T00:55:53,661 adding 'MDAnalysisTests/data/chainIDrepeat.pdb.gz' 2025-10-18T00:55:53,663 adding 'MDAnalysisTests/data/charges.pdb' 2025-10-18T00:55:53,978 adding 'MDAnalysisTests/data/cobrotoxin.h5md' 2025-10-18T00:55:54,199 adding 'MDAnalysisTests/data/cobrotoxin.pdb' 2025-10-18T00:55:54,337 adding 'MDAnalysisTests/data/cobrotoxin.tpr' 2025-10-18T00:55:54,644 adding 'MDAnalysisTests/data/cobrotoxin.trr' 2025-10-18T00:55:54,678 adding 'MDAnalysisTests/data/cobrotoxin.xtc' 2025-10-18T00:55:54,796 adding 'MDAnalysisTests/data/cobrotoxin_2024_4.tpr' 2025-10-18T00:55:54,813 adding 'MDAnalysisTests/data/cobrotoxin_dry_neutral_0.pdb' 2025-10-18T00:55:54,818 adding 'MDAnalysisTests/data/cobrotoxin_protein_forces.xvg.bz2' 2025-10-18T00:55:54,820 adding 'MDAnalysisTests/data/conect_error.pdb' 2025-10-18T00:55:54,821 adding 'MDAnalysisTests/data/conect_parsing.pdb' 2025-10-18T00:55:54,822 adding 'MDAnalysisTests/data/cryst_then_model.pdb' 2025-10-18T00:55:54,824 adding 'MDAnalysisTests/data/cryst_then_model.pdb.bz2' 2025-10-18T00:55:54,825 adding 'MDAnalysisTests/data/cryst_then_model.pdb.gz' 2025-10-18T00:55:55,085 adding 'MDAnalysisTests/data/cu.h5md' 2025-10-18T00:55:55,116 adding 'MDAnalysisTests/data/cu_malformed.h5md' 2025-10-18T00:55:55,134 adding 'MDAnalysisTests/data/dppc_vesicle_hg.gro' 2025-10-18T00:55:55,138 adding 'MDAnalysisTests/data/edited_itp.itp' 2025-10-18T00:55:55,139 adding 'MDAnalysisTests/data/elements.pdb' 2025-10-18T00:55:55,141 adding 'MDAnalysisTests/data/empty.dcd' 2025-10-18T00:55:55,142 adding 'MDAnalysisTests/data/empty_atom.gro' 2025-10-18T00:55:55,174 adding 'MDAnalysisTests/data/example.gsd' 2025-10-18T00:55:55,182 adding 'MDAnalysisTests/data/example_bonds.gsd' 2025-10-18T00:55:55,320 adding 'MDAnalysisTests/data/example_longer.gsd' 2025-10-18T00:55:55,333 adding 'MDAnalysisTests/data/fhiaims.in' 2025-10-18T00:55:55,334 adding 'MDAnalysisTests/data/five.xyz' 2025-10-18T00:55:55,335 adding 'MDAnalysisTests/data/fullerene.pdb.gz' 2025-10-18T00:55:55,338 adding 'MDAnalysisTests/data/gromacs_ala10.itp' 2025-10-18T00:55:55,340 adding 'MDAnalysisTests/data/gromacs_ala10.top' 2025-10-18T00:55:55,341 adding 'MDAnalysisTests/data/grovels.gro' 2025-10-18T00:55:55,344 adding 'MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8.dat' 2025-10-18T00:55:55,346 adding 'MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8_frames10to79.dat' 2025-10-18T00:55:55,348 adding 'MDAnalysisTests/data/huge_box.gro' 2025-10-18T00:55:55,349 adding 'MDAnalysisTests/data/incomplete.pdb' 2025-10-18T00:55:55,352 adding 'MDAnalysisTests/data/itp_nomass.itp' 2025-10-18T00:55:55,362 adding 'MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy' 2025-10-18T00:55:55,374 adding 'MDAnalysisTests/data/legacy_DCD_adk_coords.npy' 2025-10-18T00:55:55,377 adding 'MDAnalysisTests/data/legacy_DCD_c36_coords.npy' 2025-10-18T00:55:55,378 adding 'MDAnalysisTests/data/make_whole.gro' 2025-10-18T00:55:55,473 adding 'MDAnalysisTests/data/martini_dppc_chol_bilayer.gro' 2025-10-18T00:55:55,477 adding 'MDAnalysisTests/data/mini.xyz' 2025-10-18T00:55:55,479 adding 'MDAnalysisTests/data/missing_atomname.gro' 2025-10-18T00:55:55,480 adding 'MDAnalysisTests/data/model_then_cryst.pdb' 2025-10-18T00:55:55,482 adding 'MDAnalysisTests/data/model_then_cryst.pdb.bz2' 2025-10-18T00:55:55,484 adding 'MDAnalysisTests/data/model_then_cryst.pdb.gz' 2025-10-18T00:55:55,485 adding 'MDAnalysisTests/data/mol2_comments_header_bat.npy' 2025-10-18T00:55:55,487 adding 'MDAnalysisTests/data/molecule.sdf' 2025-10-18T00:55:55,489 adding 'MDAnalysisTests/data/namd_cgenff.pdb' 2025-10-18T00:55:55,493 adding 'MDAnalysisTests/data/namd_cgenff.psf' 2025-10-18T00:55:55,600 adding 'MDAnalysisTests/data/nmr_neopetrosiamide.pdb' 2025-10-18T00:55:55,606 adding 'MDAnalysisTests/data/no_endif_spc.itp' 2025-10-18T00:55:55,608 adding 'MDAnalysisTests/data/nosegid.psf' 2025-10-18T00:55:55,609 adding 'MDAnalysisTests/data/nucl_res.pdb' 2025-10-18T00:55:55,611 adding 'MDAnalysisTests/data/parmed_ala3.psf' 2025-10-18T00:55:55,636 adding 'MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt' 2025-10-18T00:55:55,638 adding 'MDAnalysisTests/data/pdbqt_querypdb.pdb' 2025-10-18T00:55:55,846 adding 'MDAnalysisTests/data/plength.gro' 2025-10-18T00:55:55,854 adding 'MDAnalysisTests/data/residwrap.gro' 2025-10-18T00:55:55,856 adding 'MDAnalysisTests/data/residwrap_0base.gro' 2025-10-18T00:55:55,857 adding 'MDAnalysisTests/data/sameresid_diffresname.gro' 2025-10-18T00:55:55,858 adding 'MDAnalysisTests/data/sameresid_diffresname.pdb' 2025-10-18T00:55:55,860 adding 'MDAnalysisTests/data/sample_velocity_file.gro' 2025-10-18T00:55:55,861 adding 'MDAnalysisTests/data/single_frame.edr' 2025-10-18T00:55:55,862 adding 'MDAnalysisTests/data/spce.itp' 2025-10-18T00:55:55,864 adding 'MDAnalysisTests/data/surface.pdb.bz2' 2025-10-18T00:55:55,865 adding 'MDAnalysisTests/data/surface.trr' 2025-10-18T00:55:55,867 adding 'MDAnalysisTests/data/test.edr' 2025-10-18T00:55:55,868 adding 'MDAnalysisTests/data/test.fasta' 2025-10-18T00:55:55,869 adding 'MDAnalysisTests/data/test.xvg' 2025-10-18T00:55:55,870 adding 'MDAnalysisTests/data/testENT.ent' 2025-10-18T00:55:55,872 adding 'MDAnalysisTests/data/test_highf.xvg' 2025-10-18T00:55:55,873 adding 'MDAnalysisTests/data/test_lowf.xvg' 2025-10-18T00:55:55,879 adding 'MDAnalysisTests/data/tip125_tric_C36.dcd' 2025-10-18T00:55:55,884 adding 'MDAnalysisTests/data/tip125_tric_C36.psf' 2025-10-18T00:55:55,886 adding 'MDAnalysisTests/data/tip5p.itp' 2025-10-18T00:55:55,888 adding 'MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr' 2025-10-18T00:55:55,933 adding 'MDAnalysisTests/data/trz_psf.psf' 2025-10-18T00:55:56,125 adding 'MDAnalysisTests/data/trzfile.trz' 2025-10-18T00:55:56,134 adding 'MDAnalysisTests/data/two_water_gro.gro' 2025-10-18T00:55:56,135 adding 'MDAnalysisTests/data/two_water_gro_multiframe.gro' 2025-10-18T00:55:56,137 adding 'MDAnalysisTests/data/two_water_gro_nonames.gro' 2025-10-18T00:55:56,139 adding 'MDAnalysisTests/data/two_water_gro_widebox.gro' 2025-10-18T00:55:56,140 adding 'MDAnalysisTests/data/tyrosol.pdbqt.bz2' 2025-10-18T00:55:56,147 adding 'MDAnalysisTests/data/unordered_res.pdb' 2025-10-18T00:55:56,149 adding 'MDAnalysisTests/data/varying_occ_tmp.pdb' 2025-10-18T00:55:56,151 adding 'MDAnalysisTests/data/watdyn.dcd' 2025-10-18T00:55:56,152 adding 'MDAnalysisTests/data/watdyn.psf' 2025-10-18T00:55:56,154 adding 'MDAnalysisTests/data/water_methane_acetic-acid_ammonia.pdb' 2025-10-18T00:55:56,156 adding 'MDAnalysisTests/data/xl_serial.pdb' 2025-10-18T00:55:56,158 adding 'MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc' 2025-10-18T00:55:56,165 adding 'MDAnalysisTests/data/xyz_random_walk.xtc' 2025-10-18T00:55:56,167 adding 'MDAnalysisTests/data/Amber/__init__.py' 2025-10-18T00:55:56,169 adding 'MDAnalysisTests/data/Amber/ace_mbondi3.error1.parm7' 2025-10-18T00:55:56,170 adding 'MDAnalysisTests/data/Amber/ace_mbondi3.error2.parm7' 2025-10-18T00:55:56,172 adding 'MDAnalysisTests/data/Amber/ace_mbondi3.error3.parm7' 2025-10-18T00:55:56,174 adding 'MDAnalysisTests/data/Amber/ace_mbondi3.error4.parm7' 2025-10-18T00:55:56,176 adding 'MDAnalysisTests/data/Amber/ace_mbondi3.nc' 2025-10-18T00:55:56,178 adding 'MDAnalysisTests/data/Amber/ace_mbondi3.negative.parm7' 2025-10-18T00:55:56,180 adding 'MDAnalysisTests/data/Amber/ace_mbondi3.parm7' 2025-10-18T00:55:56,247 adding 'MDAnalysisTests/data/Amber/ace_tip3p.nc' 2025-10-18T00:55:56,262 adding 'MDAnalysisTests/data/Amber/ace_tip3p.parm7' 2025-10-18T00:55:56,286 adding 'MDAnalysisTests/data/Amber/ache.mdcrd' 2025-10-18T00:55:56,290 adding 'MDAnalysisTests/data/Amber/ache.mdcrd.bz2' 2025-10-18T00:55:56,302 adding 'MDAnalysisTests/data/Amber/ache.prmtop' 2025-10-18T00:55:56,308 adding 'MDAnalysisTests/data/Amber/ache_chainid.error5.prmtop.bz2' 2025-10-18T00:55:56,313 adding 'MDAnalysisTests/data/Amber/ache_chainid.prmtop.bz2' 2025-10-18T00:55:56,315 adding 'MDAnalysisTests/data/Amber/ala.ff19SB.OPC.parm7.bz2' 2025-10-18T00:55:56,395 adding 'MDAnalysisTests/data/Amber/anti.top' 2025-10-18T00:55:56,537 adding 'MDAnalysisTests/data/Amber/anti_md1.mdcrd.bz2' 2025-10-18T00:55:56,827 adding 'MDAnalysisTests/data/Amber/bala.ncdf' 2025-10-18T00:55:56,857 adding 'MDAnalysisTests/data/Amber/bala.prmtop' 2025-10-18T00:55:57,544 adding 'MDAnalysisTests/data/Amber/bala.trj' 2025-10-18T00:55:57,597 adding 'MDAnalysisTests/data/Amber/capped-ala.mdcrd.bz2' 2025-10-18T00:55:57,638 adding 'MDAnalysisTests/data/Amber/capped-ala.prmtop' 2025-10-18T00:55:57,655 adding 'MDAnalysisTests/data/Amber/chitosan.prmtop' 2025-10-18T00:55:57,657 adding 'MDAnalysisTests/data/Amber/cpptraj_traj.nc' 2025-10-18T00:55:57,663 adding 'MDAnalysisTests/data/Amber/cpptraj_traj.prmtop' 2025-10-18T00:55:57,689 adding 'MDAnalysisTests/data/Amber/parmed_ala2_solv.parm7' 2025-10-18T00:55:57,716 adding 'MDAnalysisTests/data/Amber/parmed_ala2_solv.rst7' 2025-10-18T00:55:57,733 adding 'MDAnalysisTests/data/Amber/parmed_fad.prmtop' 2025-10-18T00:55:57,750 adding 'MDAnalysisTests/data/Amber/posfor.ncdf' 2025-10-18T00:55:57,772 adding 'MDAnalysisTests/data/Amber/posfor.top' 2025-10-18T00:55:57,775 adding 'MDAnalysisTests/data/Amber/test.inpcrd' 2025-10-18T00:55:57,880 adding 'MDAnalysisTests/data/Amber/tz2.truncoct.nc' 2025-10-18T00:55:57,890 adding 'MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2' 2025-10-18T00:55:57,925 adding 'MDAnalysisTests/data/analysis/1k5i_c36.pdb.gz' 2025-10-18T00:55:57,949 adding 'MDAnalysisTests/data/analysis/1k5i_c36.psf.gz' 2025-10-18T00:55:58,069 adding 'MDAnalysisTests/data/analysis/YiiP_lipids.gro.gz' 2025-10-18T00:55:58,162 adding 'MDAnalysisTests/data/analysis/YiiP_lipids.xtc' 2025-10-18T00:55:58,168 adding 'MDAnalysisTests/data/analysis/__init__.py' 2025-10-18T00:55:58,170 adding 'MDAnalysisTests/data/analysis/align_bound.pdb.gz' 2025-10-18T00:55:58,172 adding 'MDAnalysisTests/data/analysis/align_unbound.pdb.gz' 2025-10-18T00:55:58,174 adding 'MDAnalysisTests/data/analysis/msd/test_non_linear.dump.bz2' 2025-10-18T00:55:58,176 adding 'MDAnalysisTests/data/capping/__init__.py' 2025-10-18T00:55:58,178 adding 'MDAnalysisTests/data/capping/aaqaa.gro' 2025-10-18T00:55:58,180 adding 'MDAnalysisTests/data/capping/ace.pdb' 2025-10-18T00:55:58,183 adding 'MDAnalysisTests/data/capping/maestro_aaqaa_capped.pdb' 2025-10-18T00:55:58,185 adding 'MDAnalysisTests/data/capping/nma.pdb' 2025-10-18T00:55:58,188 adding 'MDAnalysisTests/data/contacts/2F4K_qlist5_remap.dat' 2025-10-18T00:55:58,189 adding 'MDAnalysisTests/data/contacts/__init__.py' 2025-10-18T00:55:58,201 adding 'MDAnalysisTests/data/contacts/villin_folded.gro.bz2' 2025-10-18T00:55:58,213 adding 'MDAnalysisTests/data/contacts/villin_unfolded.gro.bz2' 2025-10-18T00:55:58,216 adding 'MDAnalysisTests/data/coordinates/README.md' 2025-10-18T00:55:58,218 adding 'MDAnalysisTests/data/coordinates/__init__.py' 2025-10-18T00:55:58,219 adding 'MDAnalysisTests/data/coordinates/create_data.py' 2025-10-18T00:55:58,221 adding 'MDAnalysisTests/data/coordinates/create_h5md_data.py' 2025-10-18T00:55:58,222 adding 'MDAnalysisTests/data/coordinates/new_hexane.arc' 2025-10-18T00:55:58,224 adding 'MDAnalysisTests/data/coordinates/test.arc' 2025-10-18T00:55:58,225 adding 'MDAnalysisTests/data/coordinates/test.dcd' 2025-10-18T00:55:58,227 adding 'MDAnalysisTests/data/coordinates/test.gro' 2025-10-18T00:55:58,228 adding 'MDAnalysisTests/data/coordinates/test.gro.bz2' 2025-10-18T00:55:58,232 adding 'MDAnalysisTests/data/coordinates/test.h5md' 2025-10-18T00:55:58,234 adding 'MDAnalysisTests/data/coordinates/test.tng' 2025-10-18T00:55:58,236 adding 'MDAnalysisTests/data/coordinates/test.trr' 2025-10-18T00:55:58,237 adding 'MDAnalysisTests/data/coordinates/test.txyz' 2025-10-18T00:55:58,239 adding 'MDAnalysisTests/data/coordinates/test.xtc' 2025-10-18T00:55:58,241 adding 'MDAnalysisTests/data/coordinates/test.xyz' 2025-10-18T00:55:58,242 adding 'MDAnalysisTests/data/coordinates/test.xyz.bz2' 2025-10-18T00:55:58,244 adding 'MDAnalysisTests/data/coordinates/test_incomplete_vel.gro' 2025-10-18T00:55:58,246 adding 'MDAnalysisTests/data/coordinates/test_topology.pdb' 2025-10-18T00:55:58,253 adding 'MDAnalysisTests/data/dlpoly/CONFIG' 2025-10-18T00:55:58,255 adding 'MDAnalysisTests/data/dlpoly/CONFIG_minimal' 2025-10-18T00:55:58,257 adding 'MDAnalysisTests/data/dlpoly/CONFIG_order' 2025-10-18T00:55:58,281 adding 'MDAnalysisTests/data/dlpoly/HISTORY' 2025-10-18T00:55:58,284 adding 'MDAnalysisTests/data/dlpoly/HISTORY_classic' 2025-10-18T00:55:58,286 adding 'MDAnalysisTests/data/dlpoly/HISTORY_minimal' 2025-10-18T00:55:58,287 adding 'MDAnalysisTests/data/dlpoly/HISTORY_minimal_cell' 2025-10-18T00:55:58,289 adding 'MDAnalysisTests/data/dlpoly/HISTORY_order' 2025-10-18T00:55:58,291 adding 'MDAnalysisTests/data/dlpoly/__init__.py' 2025-10-18T00:55:58,295 adding 'MDAnalysisTests/data/dssp/1ahsA.pdb.dssp' 2025-10-18T00:55:58,297 adding 'MDAnalysisTests/data/dssp/1ahsA.pdb.gz' 2025-10-18T00:55:58,299 adding 'MDAnalysisTests/data/dssp/1bvyF.pdb.dssp' 2025-10-18T00:55:58,302 adding 'MDAnalysisTests/data/dssp/1bvyF.pdb.gz' 2025-10-18T00:55:58,304 adding 'MDAnalysisTests/data/dssp/1dx5I.pdb.dssp' 2025-10-18T00:55:58,306 adding 'MDAnalysisTests/data/dssp/1dx5I.pdb.gz' 2025-10-18T00:55:58,308 adding 'MDAnalysisTests/data/dssp/1eteA.pdb.dssp' 2025-10-18T00:55:58,311 adding 'MDAnalysisTests/data/dssp/1eteA.pdb.gz' 2025-10-18T00:55:58,313 adding 'MDAnalysisTests/data/dssp/1h4aX.pdb.dssp' 2025-10-18T00:55:58,316 adding 'MDAnalysisTests/data/dssp/1h4aX.pdb.gz' 2025-10-18T00:55:58,318 adding 'MDAnalysisTests/data/dssp/1i8nA.pdb.dssp' 2025-10-18T00:55:58,321 adding 'MDAnalysisTests/data/dssp/1i8nA.pdb.gz' 2025-10-18T00:55:58,322 adding 'MDAnalysisTests/data/dssp/1lpbA.pdb.dssp' 2025-10-18T00:55:58,325 adding 'MDAnalysisTests/data/dssp/1lpbA.pdb.gz' 2025-10-18T00:55:58,327 adding 'MDAnalysisTests/data/dssp/1mr1D.pdb.dssp' 2025-10-18T00:55:58,329 adding 'MDAnalysisTests/data/dssp/1mr1D.pdb.gz' 2025-10-18T00:55:58,332 adding 'MDAnalysisTests/data/dssp/1mr1D_failing.pdb.gz' 2025-10-18T00:55:58,334 adding 'MDAnalysisTests/data/dssp/1or4A.pdb.dssp' 2025-10-18T00:55:58,337 adding 'MDAnalysisTests/data/dssp/1or4A.pdb.gz' 2025-10-18T00:55:58,339 adding 'MDAnalysisTests/data/dssp/1pdoA.pdb.dssp' 2025-10-18T00:55:58,342 adding 'MDAnalysisTests/data/dssp/1pdoA.pdb.gz' 2025-10-18T00:55:58,344 adding 'MDAnalysisTests/data/dssp/1v7mV.pdb.dssp' 2025-10-18T00:55:58,347 adding 'MDAnalysisTests/data/dssp/1v7mV.pdb.gz' 2025-10-18T00:55:58,348 adding 'MDAnalysisTests/data/dssp/1y1lA.pdb.dssp' 2025-10-18T00:55:58,351 adding 'MDAnalysisTests/data/dssp/1y1lA.pdb.gz' 2025-10-18T00:55:58,353 adding 'MDAnalysisTests/data/dssp/2a2lA.pdb.dssp' 2025-10-18T00:55:58,356 adding 'MDAnalysisTests/data/dssp/2a2lA.pdb.gz' 2025-10-18T00:55:58,358 adding 'MDAnalysisTests/data/dssp/2cayA.pdb.dssp' 2025-10-18T00:55:58,361 adding 'MDAnalysisTests/data/dssp/2cayA.pdb.gz' 2025-10-18T00:55:58,363 adding 'MDAnalysisTests/data/dssp/2cviA.pdb.dssp' 2025-10-18T00:55:58,365 adding 'MDAnalysisTests/data/dssp/2cviA.pdb.gz' 2025-10-18T00:55:58,367 adding 'MDAnalysisTests/data/dssp/2fvvA.pdb.dssp' 2025-10-18T00:55:58,370 adding 'MDAnalysisTests/data/dssp/2fvvA.pdb.gz' 2025-10-18T00:55:58,372 adding 'MDAnalysisTests/data/dssp/2gu3A.pdb.dssp' 2025-10-18T00:55:58,375 adding 'MDAnalysisTests/data/dssp/2gu3A.pdb.gz' 2025-10-18T00:55:58,376 adding 'MDAnalysisTests/data/dssp/2i39A.pdb.dssp' 2025-10-18T00:55:58,379 adding 'MDAnalysisTests/data/dssp/2i39A.pdb.gz' 2025-10-18T00:55:58,381 adding 'MDAnalysisTests/data/dssp/2j49A.pdb.dssp' 2025-10-18T00:55:58,384 adding 'MDAnalysisTests/data/dssp/2j49A.pdb.gz' 2025-10-18T00:55:58,386 adding 'MDAnalysisTests/data/dssp/2qdlA.pdb.dssp' 2025-10-18T00:55:58,389 adding 'MDAnalysisTests/data/dssp/2qdlA.pdb.gz' 2025-10-18T00:55:58,391 adding 'MDAnalysisTests/data/dssp/2va0A.pdb.dssp' 2025-10-18T00:55:58,393 adding 'MDAnalysisTests/data/dssp/2va0A.pdb.gz' 2025-10-18T00:55:58,395 adding 'MDAnalysisTests/data/dssp/2xcjA.pdb.dssp' 2025-10-18T00:55:58,398 adding 'MDAnalysisTests/data/dssp/2xcjA.pdb.gz' 2025-10-18T00:55:58,399 adding 'MDAnalysisTests/data/dssp/2xdgA.pdb.dssp' 2025-10-18T00:55:58,402 adding 'MDAnalysisTests/data/dssp/2xdgA.pdb.gz' 2025-10-18T00:55:58,404 adding 'MDAnalysisTests/data/dssp/2xr6A.pdb.dssp' 2025-10-18T00:55:58,407 adding 'MDAnalysisTests/data/dssp/2xr6A.pdb.gz' 2025-10-18T00:55:58,408 adding 'MDAnalysisTests/data/dssp/3a4rA.pdb.dssp' 2025-10-18T00:55:58,412 adding 'MDAnalysisTests/data/dssp/3a4rA.pdb.gz' 2025-10-18T00:55:58,413 adding 'MDAnalysisTests/data/dssp/3aqgA.pdb.dssp' 2025-10-18T00:55:58,416 adding 'MDAnalysisTests/data/dssp/3aqgA.pdb.gz' 2025-10-18T00:55:58,418 adding 'MDAnalysisTests/data/dssp/3e8mA.pdb.dssp' 2025-10-18T00:55:58,424 adding 'MDAnalysisTests/data/dssp/3e8mA.pdb.gz' 2025-10-18T00:55:58,425 adding 'MDAnalysisTests/data/dssp/3ejfA.pdb.dssp' 2025-10-18T00:55:58,429 adding 'MDAnalysisTests/data/dssp/3ejfA.pdb.gz' 2025-10-18T00:55:58,430 adding 'MDAnalysisTests/data/dssp/3fhkA.pdb.dssp' 2025-10-18T00:55:58,433 adding 'MDAnalysisTests/data/dssp/3fhkA.pdb.gz' 2025-10-18T00:55:58,435 adding 'MDAnalysisTests/data/dssp/3gfsA.pdb.dssp' 2025-10-18T00:55:58,438 adding 'MDAnalysisTests/data/dssp/3gfsA.pdb.gz' 2025-10-18T00:55:58,440 adding 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2025-10-18T00:56:00,343 adding 'MDAnalysisTests/data/mol2/__init__.py' 2025-10-18T00:56:00,344 adding 'MDAnalysisTests/data/mol2/sodium_ion.mol2' 2025-10-18T00:56:00,345 adding 'MDAnalysisTests/data/mol2/zinc_856218.mol2' 2025-10-18T00:56:00,447 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr' 2025-10-18T00:56:00,551 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr' 2025-10-18T00:56:00,655 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr' 2025-10-18T00:56:00,811 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_2020-beta2.tpr' 2025-10-18T00:56:00,924 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr' 2025-10-18T00:56:01,038 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr' 2025-10-18T00:56:01,142 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr' 2025-10-18T00:56:01,256 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr' 2025-10-18T00:56:01,361 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr' 2025-10-18T00:56:01,463 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr' 2025-10-18T00:56:01,568 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_2024.tpr' 2025-10-18T00:56:01,671 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_2024_4.tpr' 2025-10-18T00:56:01,774 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_2025_0.tpr' 2025-10-18T00:56:01,877 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr' 2025-10-18T00:56:01,980 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr' 2025-10-18T00:56:02,083 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr' 2025-10-18T00:56:02,186 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr' 2025-10-18T00:56:02,289 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr' 2025-10-18T00:56:02,392 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr' 2025-10-18T00:56:02,494 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr' 2025-10-18T00:56:02,597 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr' 2025-10-18T00:56:02,700 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr' 2025-10-18T00:56:02,805 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr' 2025-10-18T00:56:02,908 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr' 2025-10-18T00:56:03,011 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr' 2025-10-18T00:56:03,113 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr' 2025-10-18T00:56:03,216 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr' 2025-10-18T00:56:03,319 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr' 2025-10-18T00:56:03,421 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr' 2025-10-18T00:56:03,524 adding 'MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr' 2025-10-18T00:56:03,528 adding 'MDAnalysisTests/data/tprs/__init__.py' 2025-10-18T00:56:03,853 adding 'MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr' 2025-10-18T00:56:04,552 adding 'MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr' 2025-10-18T00:56:04,566 adding 'MDAnalysisTests/data/tprs/ala_nnpot_gmx_2025_0.tpr' 2025-10-18T00:56:04,837 adding 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2025-10-18T00:56:04,864 adding 'MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr' 2025-10-18T00:56:04,865 adding 'MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr' 2025-10-18T00:56:04,867 adding 'MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr' 2025-10-18T00:56:04,869 adding 'MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr' 2025-10-18T00:56:04,870 adding 'MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr' 2025-10-18T00:56:04,872 adding 'MDAnalysisTests/data/tprs/all_bonded/dummy_2024_4.tpr' 2025-10-18T00:56:04,874 adding 'MDAnalysisTests/data/tprs/all_bonded/dummy_2025_0.tpr' 2025-10-18T00:56:04,875 adding 'MDAnalysisTests/data/tprs/all_bonded/dummy_3.3.4.top' 2025-10-18T00:56:04,878 adding 'MDAnalysisTests/data/tprs/all_bonded/dummy_3.3.4.tpr' 2025-10-18T00:56:04,880 adding 'MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr' 2025-10-18T00:56:04,882 adding 'MDAnalysisTests/data/tprs/virtual_sites/__init__.py' 2025-10-18T00:56:04,883 adding 'MDAnalysisTests/data/tprs/virtual_sites/dummy.gro' 2025-10-18T00:56:04,885 adding 'MDAnalysisTests/data/tprs/virtual_sites/dummy.top' 2025-10-18T00:56:04,887 adding 'MDAnalysisTests/data/tprs/virtual_sites/dummy_2018.mdp' 2025-10-18T00:56:04,888 adding 'MDAnalysisTests/data/tprs/virtual_sites/dummy_2020.mdp' 2025-10-18T00:56:04,889 adding 'MDAnalysisTests/data/tprs/virtual_sites/dummy_2021.gro' 2025-10-18T00:56:04,891 adding 'MDAnalysisTests/data/tprs/virtual_sites/dummy_2021.top' 2025-10-18T00:56:04,893 adding 'MDAnalysisTests/data/tprs/virtual_sites/dummy_4.0.7.mdp' 2025-10-18T00:56:04,894 adding 'MDAnalysisTests/data/tprs/virtual_sites/dummy_4.0.7.top' 2025-10-18T00:56:04,897 adding 'MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr' 2025-10-18T00:56:04,900 adding 'MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr' 2025-10-18T00:56:04,903 adding 'MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr' 2025-10-18T00:56:04,905 adding 'MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr' 2025-10-18T00:56:04,908 adding 'MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr' 2025-10-18T00:56:04,910 adding 'MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr' 2025-10-18T00:56:04,913 adding 'MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr' 2025-10-18T00:56:04,915 adding 'MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024_4.tpr' 2025-10-18T00:56:04,918 adding 'MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2025_0.tpr' 2025-10-18T00:56:04,920 adding 'MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr' 2025-10-18T00:56:04,922 adding 'MDAnalysisTests/data/windows/README.md' 2025-10-18T00:56:04,945 adding 'MDAnalysisTests/data/windows/WIN_HISTORY' 2025-10-18T00:56:04,967 adding 'MDAnalysisTests/data/windows/WIN_ache.mdcrd' 2025-10-18T00:56:05,069 adding 'MDAnalysisTests/data/windows/WIN_nmr_neopetrosiamide.pdb' 2025-10-18T00:56:05,075 adding 'MDAnalysisTests/data/windows/WIN_test.arc' 2025-10-18T00:56:05,077 adding 'MDAnalysisTests/data/windows/WIN_wat.lammpstrj' 2025-10-18T00:56:05,078 adding 'MDAnalysisTests/data/windows/__init__.py' 2025-10-18T00:56:05,080 adding 'MDAnalysisTests/formats/__init__.py' 2025-10-18T00:56:05,083 adding 'MDAnalysisTests/formats/test_libdcd.py' 2025-10-18T00:56:05,085 adding 'MDAnalysisTests/formats/test_libmdaxdr.py' 2025-10-18T00:56:05,087 adding 'MDAnalysisTests/import/__init__.py' 2025-10-18T00:56:05,088 adding 'MDAnalysisTests/import/fork_called.py' 2025-10-18T00:56:05,089 adding 'MDAnalysisTests/import/test_import.py' 2025-10-18T00:56:05,091 adding 'MDAnalysisTests/lib/__init__.py' 2025-10-18T00:56:05,092 adding 'MDAnalysisTests/lib/test_augment.py' 2025-10-18T00:56:05,094 adding 'MDAnalysisTests/lib/test_cutil.py' 2025-10-18T00:56:05,101 adding 'MDAnalysisTests/lib/test_distances.py' 2025-10-18T00:56:05,103 adding 'MDAnalysisTests/lib/test_log.py' 2025-10-18T00:56:05,106 adding 'MDAnalysisTests/lib/test_mdamath.py' 2025-10-18T00:56:05,107 adding 'MDAnalysisTests/lib/test_neighborsearch.py' 2025-10-18T00:56:05,109 adding 'MDAnalysisTests/lib/test_nsgrid.py' 2025-10-18T00:56:05,111 adding 'MDAnalysisTests/lib/test_pkdtree.py' 2025-10-18T00:56:05,113 adding 'MDAnalysisTests/lib/test_qcprot.py' 2025-10-18T00:56:05,119 adding 'MDAnalysisTests/lib/test_util.py' 2025-10-18T00:56:05,121 adding 'MDAnalysisTests/parallelism/__init__.py' 2025-10-18T00:56:05,123 adding 'MDAnalysisTests/parallelism/test_multiprocessing.py' 2025-10-18T00:56:05,125 adding 'MDAnalysisTests/parallelism/test_pickle_transformation.py' 2025-10-18T00:56:05,127 adding 'MDAnalysisTests/topology/__init__.py' 2025-10-18T00:56:05,129 adding 'MDAnalysisTests/topology/base.py' 2025-10-18T00:56:05,130 adding 'MDAnalysisTests/topology/test_altloc.py' 2025-10-18T00:56:05,131 adding 'MDAnalysisTests/topology/test_crd.py' 2025-10-18T00:56:05,133 adding 'MDAnalysisTests/topology/test_dlpoly.py' 2025-10-18T00:56:05,134 adding 'MDAnalysisTests/topology/test_dms.py' 2025-10-18T00:56:05,135 adding 'MDAnalysisTests/topology/test_fhiaims.py' 2025-10-18T00:56:05,137 adding 'MDAnalysisTests/topology/test_gms.py' 2025-10-18T00:56:05,138 adding 'MDAnalysisTests/topology/test_gro.py' 2025-10-18T00:56:05,140 adding 'MDAnalysisTests/topology/test_gsd.py' 2025-10-18T00:56:05,141 adding 'MDAnalysisTests/topology/test_guessers.py' 2025-10-18T00:56:05,143 adding 'MDAnalysisTests/topology/test_hoomdxml.py' 2025-10-18T00:56:05,145 adding 'MDAnalysisTests/topology/test_itp.py' 2025-10-18T00:56:05,147 adding 'MDAnalysisTests/topology/test_lammpsdata.py' 2025-10-18T00:56:05,149 adding 'MDAnalysisTests/topology/test_minimal.py' 2025-10-18T00:56:05,150 adding 'MDAnalysisTests/topology/test_mmtf.py' 2025-10-18T00:56:05,152 adding 'MDAnalysisTests/topology/test_mol2.py' 2025-10-18T00:56:05,154 adding 'MDAnalysisTests/topology/test_pdb.py' 2025-10-18T00:56:05,156 adding 'MDAnalysisTests/topology/test_pdbqt.py' 2025-10-18T00:56:05,157 adding 'MDAnalysisTests/topology/test_pqr.py' 2025-10-18T00:56:05,159 adding 'MDAnalysisTests/topology/test_psf.py' 2025-10-18T00:56:05,161 adding 'MDAnalysisTests/topology/test_tables.py' 2025-10-18T00:56:05,163 adding 'MDAnalysisTests/topology/test_top.py' 2025-10-18T00:56:05,165 adding 'MDAnalysisTests/topology/test_topology_base.py' 2025-10-18T00:56:05,166 adding 'MDAnalysisTests/topology/test_topology_str_types.py' 2025-10-18T00:56:05,169 adding 'MDAnalysisTests/topology/test_tprparser.py' 2025-10-18T00:56:05,170 adding 'MDAnalysisTests/topology/test_txyz.py' 2025-10-18T00:56:05,172 adding 'MDAnalysisTests/topology/test_xpdb.py' 2025-10-18T00:56:05,173 adding 'MDAnalysisTests/topology/test_xyz.py' 2025-10-18T00:56:05,175 adding 'MDAnalysisTests/transformations/__init__.py' 2025-10-18T00:56:05,176 adding 'MDAnalysisTests/transformations/test_base.py' 2025-10-18T00:56:05,177 adding 'MDAnalysisTests/transformations/test_boxdimensions.py' 2025-10-18T00:56:05,179 adding 'MDAnalysisTests/transformations/test_fit.py' 2025-10-18T00:56:05,181 adding 'MDAnalysisTests/transformations/test_nojump.py' 2025-10-18T00:56:05,182 adding 'MDAnalysisTests/transformations/test_positionaveraging.py' 2025-10-18T00:56:05,184 adding 'MDAnalysisTests/transformations/test_rotate.py' 2025-10-18T00:56:05,186 adding 'MDAnalysisTests/transformations/test_translate.py' 2025-10-18T00:56:05,187 adding 'MDAnalysisTests/transformations/test_wrap.py' 2025-10-18T00:56:05,189 adding 'MDAnalysisTests/utils/__init__.py' 2025-10-18T00:56:05,190 adding 'MDAnalysisTests/utils/test_authors.py' 2025-10-18T00:56:05,191 adding 'MDAnalysisTests/utils/test_datafiles.py' 2025-10-18T00:56:05,193 adding 'MDAnalysisTests/utils/test_duecredit.py' 2025-10-18T00:56:05,194 adding 'MDAnalysisTests/utils/test_failure.py' 2025-10-18T00:56:05,195 adding 'MDAnalysisTests/utils/test_imports.py' 2025-10-18T00:56:05,197 adding 'MDAnalysisTests/utils/test_log.py' 2025-10-18T00:56:05,198 adding 'MDAnalysisTests/utils/test_meta.py' 2025-10-18T00:56:05,200 adding 'MDAnalysisTests/utils/test_modelling.py' 2025-10-18T00:56:05,202 adding 'MDAnalysisTests/utils/test_persistence.py' 2025-10-18T00:56:05,203 adding 'MDAnalysisTests/utils/test_pickleio.py' 2025-10-18T00:56:05,205 adding 'MDAnalysisTests/utils/test_qcprot.py' 2025-10-18T00:56:05,207 adding 'MDAnalysisTests/utils/test_selections.py' 2025-10-18T00:56:05,209 adding 'MDAnalysisTests/utils/test_streamio.py' 2025-10-18T00:56:05,212 adding 'MDAnalysisTests/utils/test_transformations.py' 2025-10-18T00:56:05,214 adding 'MDAnalysisTests/utils/test_units.py' 2025-10-18T00:56:05,215 adding 'MDAnalysisTests/visualization/__init__.py' 2025-10-18T00:56:05,217 adding 'MDAnalysisTests/visualization/test_streamlines.py' 2025-10-18T00:56:05,221 adding 'mdanalysistests-2.10.0.dist-info/licenses/AUTHORS' 2025-10-18T00:56:05,234 adding 'mdanalysistests-2.10.0.dist-info/licenses/LICENSE' 2025-10-18T00:56:05,250 adding 'mdanalysistests-2.10.0.dist-info/METADATA' 2025-10-18T00:56:05,251 adding 'mdanalysistests-2.10.0.dist-info/WHEEL' 2025-10-18T00:56:05,252 adding 'mdanalysistests-2.10.0.dist-info/top_level.txt' 2025-10-18T00:56:05,265 adding 'mdanalysistests-2.10.0.dist-info/RECORD' 2025-10-18T00:56:05,297 removing build/bdist.linux-armv7l/wheel 2025-10-18T00:56:05,609 Building wheel for mdanalysistests (pyproject.toml): finished with status 'done' 2025-10-18T00:56:06,858 Created wheel for mdanalysistests: filename=mdanalysistests-2.10.0-py3-none-any.whl size=58343067 sha256=9743666902f1b888d26d9d339f559864c1ce6fa622ec9ef51e5eb894475f05be 2025-10-18T00:56:06,859 Stored in directory: /tmp/pip-ephem-wheel-cache-5_75yv1b/wheels/f6/b1/df/028b83b05aa41a1e13af05e75b9c39b1484f595084caa5bd03 2025-10-18T00:56:06,961 Successfully built mdanalysistests 2025-10-18T00:56:08,748 Removed build tracker: '/tmp/pip-build-tracker-mlpr6le0'