2025-10-18T00:55:22,096 Created temporary directory: /tmp/pip-ephem-wheel-cache-psl2wcxe
2025-10-18T00:55:22,097 Created temporary directory: /tmp/pip-build-tracker-g3phjpg0
2025-10-18T00:55:22,098 Initialized build tracking at /tmp/pip-build-tracker-g3phjpg0
2025-10-18T00:55:22,098 Created build tracker: /tmp/pip-build-tracker-g3phjpg0
2025-10-18T00:55:22,099 Entered build tracker: /tmp/pip-build-tracker-g3phjpg0
2025-10-18T00:55:22,100 Created temporary directory: /tmp/pip-wheel-zeul4lqk
2025-10-18T00:55:22,103 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-18T00:55:22,105 Created temporary directory: /tmp/pip-ephem-wheel-cache-xptl7rg7
2025-10-18T00:55:22,130 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-18T00:55:22,133 2 location(s) to search for versions of mdanalysis:
2025-10-18T00:55:22,133 * https://pypi.org/simple/mdanalysis/
2025-10-18T00:55:22,133 * https://www.piwheels.org/simple/mdanalysis/
2025-10-18T00:55:22,134 Fetching project page and analyzing links: https://pypi.org/simple/mdanalysis/
2025-10-18T00:55:22,135 Getting page https://pypi.org/simple/mdanalysis/
2025-10-18T00:55:22,136 Found index url https://pypi.org/simple
2025-10-18T00:55:22,365 Fetched page https://pypi.org/simple/mdanalysis/ as application/vnd.pypi.simple.v1+json
2025-10-18T00:55:22,406   Found link https://files.pythonhosted.org/packages/97/94/fd5a74e25fba58cfb514dc39ef4717baa392057503d6c38897f886b2c0c6/MDAnalysis-0.7.6.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.7.6
2025-10-18T00:55:22,407   Found link https://files.pythonhosted.org/packages/9d/32/36e44fd1b946331bd72c7cc8806dd2b37f597a49ac7ccfe2a64ad91e59f7/MDAnalysis-0.8.0rc2.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.0rc2
2025-10-18T00:55:22,408   Found link https://files.pythonhosted.org/packages/d9/c4/27ff9dcd35aeef52f41f01a6eff0328eda8a5fa6dfa8097daa9ff70dcdf8/MDAnalysis-0.8.0rc4.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.0rc4
2025-10-18T00:55:22,409   Found link https://files.pythonhosted.org/packages/35/04/425a87220983514ef06f87cd98f54db0a84eed5bec9dfd4b27b6799ae99e/MDAnalysis-0.8.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.0
2025-10-18T00:55:22,409   Found link https://files.pythonhosted.org/packages/7d/39/0afea6f9c2cb10259479800c3b8496c59ecdab8019d5c0cf868729db4c91/MDAnalysis-0.8.1rc1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.1rc1
2025-10-18T00:55:22,410   Found link https://files.pythonhosted.org/packages/9b/45/5cfc731f70af562c860d5b79329980b8b380dd8e283847c950c1f7af8d4c/MDAnalysis-0.8.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.1
2025-10-18T00:55:22,411   Found link https://files.pythonhosted.org/packages/b5/f0/a3d1acd3fedafd4b56f3cc8f880acb7f7f0f1c68c46121b4c180975435bb/MDAnalysis-0.9.0-dev.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.9.0-dev
2025-10-18T00:55:22,411   Found link https://files.pythonhosted.org/packages/3b/1a/3bd08be00e453a29b6bcbb3320bb91619539eef69ab5ddef46e4b477b34d/MDAnalysis-0.9.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.9.0
2025-10-18T00:55:22,412   Found link https://files.pythonhosted.org/packages/e5/28/dcafeb58175edede7e4393d5ccfeafc77c3ca8eac6dd2f14d3919e9d4c0c/MDAnalysis-0.9.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.9.1
2025-10-18T00:55:22,413   Found link https://files.pythonhosted.org/packages/4e/59/72545bc442ee0f6a45cafbd3b0e99add0aca51cbbbe3a882cc930f993306/MDAnalysis-0.9.2.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.9.2
2025-10-18T00:55:22,413   Found link https://files.pythonhosted.org/packages/82/db/8d468530d1a4834031166fcd9fb754a13e3fd5cc65ee09970ec57c9948cb/MDAnalysis-0.10.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.10.0
2025-10-18T00:55:22,414   Found link https://files.pythonhosted.org/packages/18/80/e6a5502a43f2ce2c432e08a9b404febc46fd403fb5e4b13ddc429f676fd7/MDAnalysis-0.11.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.11.0
2025-10-18T00:55:22,415   Found link https://files.pythonhosted.org/packages/66/77/d666034a559dc75a0cc485345f3058b45b8b067a858adb009b6fae0bcefc/MDAnalysis-0.12.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.12.1
2025-10-18T00:55:22,416   Found link https://files.pythonhosted.org/packages/78/33/704a708797267b35bfe27cc40e83eedabad62c7bb143babbc728ee285082/MDAnalysis-0.13.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.13.0
2025-10-18T00:55:22,416   Found link https://files.pythonhosted.org/packages/11/4c/1b683b1448f14e73f8a45981e27689ca694d5f1106e0453145f8619ffc0c/MDAnalysis-0.14.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.14.0
2025-10-18T00:55:22,417   Found link https://files.pythonhosted.org/packages/9f/56/a4cae14e45aa893a3578905a97e17a325d663e424736366adbc134e72dce/MDAnalysis-0.15.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.15.0
2025-10-18T00:55:22,417   Found link https://files.pythonhosted.org/packages/55/bb/32c3dbd8e92b661a98839a50bd3185d29949afe4618fc1a846e42bad0ebf/MDAnalysis-0.16.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.16.0
2025-10-18T00:55:22,418   Found link https://files.pythonhosted.org/packages/5f/68/7e7ce717700411e25821100a3bc3d31866ef7abee7e282736f9e0635fef7/MDAnalysis-0.16.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.16.1
2025-10-18T00:55:22,418   Found link https://files.pythonhosted.org/packages/ae/d5/07c38db64a6bd9bcec03caea8e07137bb2e571ce2bd145f9804727dfc2a5/MDAnalysis-0.16.2.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.16.2
2025-10-18T00:55:22,419   Found link https://files.pythonhosted.org/packages/91/e0/b12ee57016dffcf8da1f5651745ab981a09bc9e51519b6fa752a1a9a6d0f/MDAnalysis-0.17.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.17.0
2025-10-18T00:55:22,420   Found link https://files.pythonhosted.org/packages/17/44/e9aff78fc88f6b8ac56b7626f3c83ed3c53f723b3f756d4c211ebd5add74/MDAnalysis-0.18.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.18.0
2025-10-18T00:55:22,420   Found link https://files.pythonhosted.org/packages/6e/30/a2b4339369e252bf22dc8d1e732870bf88c33a73e4f5e73788c1a65b25a3/MDAnalysis-0.19.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.19.0
2025-10-18T00:55:22,421   Found link https://files.pythonhosted.org/packages/1c/24/b03a9bf48a1703b1ec31c34585aab123ca73e7778155ac3d5301a564fde6/MDAnalysis-0.19.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.19.1
2025-10-18T00:55:22,422   Found link https://files.pythonhosted.org/packages/be/72/6c2f9fcd842c9a50315ac93c4079b3f70735c6125fe903d04fb68a6e616a/MDAnalysis-0.19.2.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.19.2
2025-10-18T00:55:22,422   Found link https://files.pythonhosted.org/packages/b8/49/a0470dda3837aa4c42a7d2e69a4aaa1646ce2aeffe686f6887666f265b43/MDAnalysis-0.20.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.20.0
2025-10-18T00:55:22,423   Found link https://files.pythonhosted.org/packages/83/4b/97c2df212f1eee47144648aa0e0da1a9022eab74d3fc1fbaf2767734de3d/MDAnalysis-0.20.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.20.1
2025-10-18T00:55:22,423   Found link https://files.pythonhosted.org/packages/c9/ae/11905971cc6cdb436bff040270f58fb3fc54ef77aea2ce2dfc269129f74e/MDAnalysis-1.0.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 1.0.0
2025-10-18T00:55:22,425   Link requires a different Python (3.11.2 not in: '>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9'): https://files.pythonhosted.org/packages/9e/19/1d32ded1891605facf6faf6e0de4ff6bd33db3f7983d84cfc10074363990/MDAnalysis-1.0.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2025-10-18T00:55:22,426   Skipping link: 1.0.1 Requires-Python >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9: https://files.pythonhosted.org/packages/9e/19/1d32ded1891605facf6faf6e0de4ff6bd33db3f7983d84cfc10074363990/MDAnalysis-1.0.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2025-10-18T00:55:22,428   Link requires a different Python (3.11.2 not in: '>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9'): https://files.pythonhosted.org/packages/0f/5a/3f34615abbe7c7758847636167d0caad7bb428c3950da64e7a3003b2c6fc/MDAnalysis-1.1.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2025-10-18T00:55:22,428   Skipping link: 1.1.0 Requires-Python >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9: https://files.pythonhosted.org/packages/0f/5a/3f34615abbe7c7758847636167d0caad7bb428c3950da64e7a3003b2c6fc/MDAnalysis-1.1.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2025-10-18T00:55:22,430   Link requires a different Python (3.11.2 not in: '>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9'): https://files.pythonhosted.org/packages/43/64/5fc4d327f242130f983b9a1ded4a406191385370dbc55a7be99f8ead126d/MDAnalysis-1.1.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2025-10-18T00:55:22,430   Skipping link: 1.1.1 Requires-Python >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9: https://files.pythonhosted.org/packages/43/64/5fc4d327f242130f983b9a1ded4a406191385370dbc55a7be99f8ead126d/MDAnalysis-1.1.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2025-10-18T00:55:22,431   Found link https://files.pythonhosted.org/packages/55/d1/9e302a51bdf6b3d0b7045c20b42203ad8ad20bf2103e8c19db2da868c6e7/MDAnalysis-2.0.0b0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 2.0.0b0
2025-10-18T00:55:22,432   Found link https://files.pythonhosted.org/packages/bf/a2/5371b04ff9009b7c33e2e211bd622f961d30ccc47cb45b579f314572dfee/MDAnalysis-2.0.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.6), version: 2.0.0
2025-10-18T00:55:22,433   Found link https://files.pythonhosted.org/packages/fd/5a/ff83875f292645f916cc3df339ce45b9f23a06183da51638efb6c593d2e6/MDAnalysis-2.1.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.7), version: 2.1.0
2025-10-18T00:55:22,433   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/da/e6/70ff5c7854cde5b6506cfd017f1b8271cb58f1d23f0d2e92b2119a5a2ab8/MDAnalysis-2.2.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,434   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/dd/91/227cddc28727e6d5ba1671f46657c9affe449d4259f9e598af74d1e878ae/MDAnalysis-2.2.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,434   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8d/1d/e7355508ddd8254f4d67cae78675b48cf1fb0d91480b1ef6f836afb8d7fa/MDAnalysis-2.2.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,435   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bb/d7/e97e9ddf0dbc048765a02f2d16d09f62814ff12ab26d78ca00ee5ca5e21f/MDAnalysis-2.2.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,436   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f3/07/a888f3fe052fb83ef68491a4f9e818bcf37e499492a206a3bd8e74f713bc/MDAnalysis-2.2.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,436   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bc/c2/e8ba8d35609854287ec30cdb80a79e8de33f1cd88fd05efd40bdb705b142/MDAnalysis-2.2.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,437   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/17/0f/c96e22c0487dc4758d6cb895c0707c12e359b9e48d5022f7316df42f8c84/MDAnalysis-2.2.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,437   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/50/d9/af23d161bc9c50678f955d802b8cb1ab624e715ed7d86e8e14f86e4b8f80/MDAnalysis-2.2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,438   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/83/5c/464d58a27ce0e2b0f010b1c65d0b4149256a7c470f5076beee1928e5e9a9/MDAnalysis-2.2.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,439   Found link https://files.pythonhosted.org/packages/5b/73/a077ff42d0cd88c5d3d6320fb156811cf67b28b5ea09a3c800e31af84b9b/MDAnalysis-2.2.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.2.0
2025-10-18T00:55:22,439   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8b/2f/b256ebf5f841f7db75f882fcd40a4260fe5b0f58a005ec80b5b6a06d00eb/MDAnalysis-2.3.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,440   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bd/3f/a2671e82dd0cce8ba6989ab7a2ca7b41caf030c060826e51f755db342ba7/MDAnalysis-2.3.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,440   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/49/ee/ec90cb066842d53783b8ee5b64ff6e53516072c248e175959d0a8fc7bf22/MDAnalysis-2.3.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,441   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/34/53/4b049681653aff30fa7f071a2aef6a842efe5c1f17d5852c0650517779c9/MDAnalysis-2.3.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,442   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/92/13/6e132a997503ecc40413196317a6bd8698ba503a7fc0af766af94b441da7/MDAnalysis-2.3.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,442   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/87/89/cf077bb830fecea88bafb1496dce463292195e957560f50853010ff30337/MDAnalysis-2.3.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,443   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f1/13/f2f10cb68c696fe39700c6efc44ac3d4e3e0700dcf53e38057f4a659183b/MDAnalysis-2.3.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,443   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/df/01/07823d486611f6ab2a71b6a378554e95b4e804eb59f00f196db0f54a014d/MDAnalysis-2.3.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,444   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f3/12/1ca45a5c081c74219a3de9d0886a164cbcd22205f628eb7c9dd6cf2b83e8/MDAnalysis-2.3.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,445   Found link https://files.pythonhosted.org/packages/30/c2/f2508b8e57e164eacb29af064eb633861515fdb26b641fb13da24dd56c13/MDAnalysis-2.3.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.3.0
2025-10-18T00:55:22,446   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b9/eb/37ec700b4b4ab96f9e7e2e4d6e00fc5eac5ca4a93108ae372b68a7400e36/MDAnalysis-2.4.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,446   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/21/f8/975a66519b62a477edcc5478f9e13cba80b360e274f70c74c808f52dcacb/MDAnalysis-2.4.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,447   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/2f/6e/f8361e40f161ea078c3a0d8f14e7934c02ddb2e6bb22d6645f927ccb2b0a/MDAnalysis-2.4.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,447   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/42/61/dcfeec3752842e387baf268ba2ac21d3b7af30a2fd79cc133d34d545f84d/MDAnalysis-2.4.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,448   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/7e/b8/d37658555ff36a7bb6e934d017d6892be5f244d1b978b4b3afe78b7ce70c/MDAnalysis-2.4.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,448   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/33/71/89f035c3610952f590e833c06e95ebc951ee8b38ec15fa3a9b16dbf03ac5/MDAnalysis-2.4.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,449   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/75/26/21dbc3d45af119b4f62a26a6da01d26974bfff38d31ce28fda1c4dafd2e1/MDAnalysis-2.4.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,449   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c0/ea/59497208df61454b914456144adad561b8a2949b62dfc7016f979661556c/MDAnalysis-2.4.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,450   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/e7/14/7d169a6807b2a80430e56df3d8a365fd77472666eca2699a406229e31a30/MDAnalysis-2.4.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,450   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/96/9d/08c32ba004d58c9c9b9113cb5026ec4f4787b5cbe909b35ac7fedde50582/MDAnalysis-2.4.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,451   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/98/8d/27b01addb197cd266414763403e88bbaaf2c4f3afa457a5d0f223d2cabbc/MDAnalysis-2.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,451   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ac/19/a4a8d5000be7bcadf20b6150731d2aab5e0842e6313c7b2c7b4d121e7ca6/MDAnalysis-2.4.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,452   Found link https://files.pythonhosted.org/packages/a9/b0/67c19de6f80f4d0b2b465b3d5f94d347ce0d200d7da6ed7d9d91b712db4d/MDAnalysis-2.4.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.4.0
2025-10-18T00:55:22,453   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/27/59/cd13f05e4a4dba1a96f818ab99619cf45dd4980086a69326ef9d973073cd/MDAnalysis-2.4.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,454   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/9b/91/59b0303d555fe946144daeeb3484f8dae716ae78c4105d40647d83bda678/MDAnalysis-2.4.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,454   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ba/9d/5f2429ee496079a2969b9b03850ab5fd5f5be242119b088855fd49f6f6e6/MDAnalysis-2.4.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,455   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/9d/ae/3ae3b51a0adb99099572052b05e6202efc2f1a02795ed8f9de5b2b0ef154/MDAnalysis-2.4.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,455   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/db/6e/b396db627091d47b6f224f02cb08739c8a8ef697ee9949f3d4be81cc8ddf/MDAnalysis-2.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,456   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/01/1e/a7dcf4f55b7dd624edaa4fa6b47d202fd3884c5b73ce13ac81fdaee0339b/MDAnalysis-2.4.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,456   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c8/e5/1f68f743a1ad1b9a09d2047cc55c6565e5c835c2a444686e8458f5dac831/MDAnalysis-2.4.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,457   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8a/3d/34bc8f592d832ec464e427ecf09c62898a128a41c3f1ae142a1d9f9f2646/MDAnalysis-2.4.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,457   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/a4/3f/c3961c791f4ab6128fbde66d5829b53d8e89a67ac3d4c23850b58c267206/MDAnalysis-2.4.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,458   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/3d/59/1a669cb57701c883c0b2e36742fd5d7a250a71fc24e369c57db71496481f/MDAnalysis-2.4.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,459   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/64/3f/4a0d22c2b5bad72be6c07c31c6e9e870e6b3a50142edc97962830bbe22ad/MDAnalysis-2.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,459   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/83/d8/e99fcc0339181b0ffe3fac620f884241bd502bb392696e2429984c3ea81d/MDAnalysis-2.4.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,460   Found link https://files.pythonhosted.org/packages/8f/c0/eba86324ca52fe66db629a4d805729ad8ac3364e3adad532c063b52b7051/MDAnalysis-2.4.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.4.1
2025-10-18T00:55:22,461   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/39/ae/52d836a64c4094794580daf0d2692fa95d244be6321fa17e6d45fe35f621/MDAnalysis-2.4.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,462   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/69/c7/3dfe97658982390bbf93cf97f4aabb22025d2956bcd82b410e8c1831dfac/MDAnalysis-2.4.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,462   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/73/74/abcb7c91e47f350db0268c2058f079c937bb2f337d73b62ca3b8dea4642e/MDAnalysis-2.4.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,463   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f1/34/7eedce6129f71fa38fbf9d7fe3a8f366ddee3142afb07113598bf2b66d81/MDAnalysis-2.4.2-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,463   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ee/40/20322a888419cc4aeaafa552c51c97c666a46e69c0d130dc5744ec04ae58/MDAnalysis-2.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,464   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8b/65/c72765a2a6c73b8e03e114cf7e1661c28df3049adc42e8c75838b48ca083/MDAnalysis-2.4.2-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,464   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/57/eb/504c7f70f9d10d54ce9227df3c71b128b7a15945c525ad1604a99e654973/MDAnalysis-2.4.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,465   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/83/84/1fa84dc9f427b8200444b1921eaf6739d9309203ffe8851a0c0e9236acb7/MDAnalysis-2.4.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,465   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/44/7f/4e2ae6b5207f9782cfff053f3939433c62ef97e624bf8a71c07411d015e9/MDAnalysis-2.4.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,466   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/89/9a/8e6cdd8c6da04926bbaea76877b9b17082b77db742a82074b2c6dfb85e99/MDAnalysis-2.4.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,466   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/19/cc/840974bc7109839cdef50cc049336cefb2a4acc44f68913eec5f0d4db458/MDAnalysis-2.4.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,467   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/89/37/ee29c83d622e3d55a2e2936d70cf3f3d74beaf28d5d5747385e2f9149ec8/MDAnalysis-2.4.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,468   Found link https://files.pythonhosted.org/packages/7d/6b/f0ea2ab44ed0a2448737d779e02d3ae719c186dc9e3ce4cd0d75b4026dcc/MDAnalysis-2.4.2.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.4.2
2025-10-18T00:55:22,468   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/80/b5/bd5da798ba3dc191d9c4bfe3c130db1c93b917dd85b398fb3cafabeefffe/MDAnalysis-2.4.3-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,469   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bb/e3/5c3f39b1d9eb8d583d9c1e6284283895e0cd530bf444512a462637f65918/MDAnalysis-2.4.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,470   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/da/23/33758010c6a4a39f1d7548da0760e89447a67a52f65ca44fe8c61739f2ec/MDAnalysis-2.4.3-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,470   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/0a/ea/4d2009e7a20642050da1bfbb61b96153961087c71cb41f60c0d0309a0e9f/MDAnalysis-2.4.3-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,471   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/db/bf/5e26758e34fd7573d1f1437664009c4940fbe62e89b372640576b7c00edc/MDAnalysis-2.4.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,471   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/af/b3/b906d3a800e414049e88d84819ac93fb790ee3d9ef7b9561a1fec97910f4/MDAnalysis-2.4.3-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,472   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/4c/37/fbd81452243dffbda76b234e5830cd44be85efe97d0b1839b0a7378a36d2/MDAnalysis-2.4.3-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,472   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f7/75/05c14b9784df8b7e06d270089ea9438323cd781d6897d870e13347a1d497/MDAnalysis-2.4.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,473   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/eb/74/ab6867e602e5fc30f21ee6fe8669f42c4f47b8b7cc0b5686cad60a2ed7be/MDAnalysis-2.4.3-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,473   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/91/be/9896583934126d2207d79c9fd1bd19918b1652fafb2d09489e7306c5cbc6/MDAnalysis-2.4.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,474   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/27/5c/17e47fa60624834e70c34f4625cd6105d621fc055bc59339173e71450a6e/MDAnalysis-2.4.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,474   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/01/a9/1851961fb6f7a64d837de8ecbd4548c42e4066b303ac095498169f8c64e9/MDAnalysis-2.4.3-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,475   Found link https://files.pythonhosted.org/packages/6b/21/c8e7b9655e7819e6e12fd45b35175a13b73262626aefa0a2d1c6766708bc/MDAnalysis-2.4.3.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.4.3
2025-10-18T00:55:22,476   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/70/dd/509c38c5a9bf1097c38d83833b3e31c1d567bb2eeec7aec24b774e07fdbf/MDAnalysis-2.5.0.dev0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,477   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b5/df/cbec71441c70e7e56ad669dbfca766803579251324c1588543ca3c5c60c9/MDAnalysis-2.5.0.dev0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,477   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/70/90/52cc55304d6cad9b26e4b4866e2f1d5b369a61f3f5f7f35628d637218d02/MDAnalysis-2.5.0.dev0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,478   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ca/a8/c17eff9a6ddc6cf00823750a64787b0b4cce4d3e638e5bbbe05cfeaef483/MDAnalysis-2.5.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,478   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/e4/71/c597d18fa401a7335a4c809384468df34fafd44db206dbd575aadca22c5c/MDAnalysis-2.5.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,479   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f7/73/b385fbed9e3200647586572be9acd0b9ff860d6422d4679a34405a632818/MDAnalysis-2.5.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,479   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/db/b4/64e0f3cf5dd47884163c67dc45156878e0740c6b48c646821d259d004372/MDAnalysis-2.5.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,480   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/85/21/4eff28643878504f800d87898d0e0d2f2719a1e3e5aa9b8a82985c889a41/MDAnalysis-2.5.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,480   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/4f/a1/af895e16f737ddec418f1b3da2a27868111eee59bef5816209531e3cae81/MDAnalysis-2.5.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,481   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f2/8b/c6f3db1e022b3716322528bcfdf3e806c56cdcf7713e9db70b75343db384/MDAnalysis-2.5.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,481   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/2f/bc/ec355c860ef217518041358c33cf8d2905d0580daaa2946405deec5ea7f4/MDAnalysis-2.5.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,482   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/5c/e6/0a150fec191ba3d421ae2ac183fc51bfddb0031fc4190e1832605158a845/MDAnalysis-2.5.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,483   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/7b/28/c26a404ee253d0839b6ea21053b79e5662883b92b1672ff0e1678b679f44/MDAnalysis-2.5.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,483   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/36/c4/6d7e584d3dbccc8f197ed6acc47ec8c72dc4a11b101192c91d122079ec17/MDAnalysis-2.5.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,484   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/5e/35/c174ccad552dd6ddbcd907b3ed000344e4ea4da82cd960d0e20a7c221c25/MDAnalysis-2.5.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,484   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/85/03/7ae1477a01aa3b3b38cf87988316846fd65ba3a6572d00dfe83ea0d8f27f/MDAnalysis-2.5.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,485   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b9/80/72619db87e3b6997b84a817605439aa2c37b0e083aada34e4d3a312f4ea5/MDAnalysis-2.5.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,485   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b1/b5/fb8748f0b076b2d01df6f6d80bfcd6a94e07f1a9d35c636e085b511ca12d/MDAnalysis-2.5.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,486   Found link https://files.pythonhosted.org/packages/a8/49/d03958061c86cbb2d2c8aa4019fd7cb575f5fd49988f6df69e957c64a28f/MDAnalysis-2.5.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9), version: 2.5.0
2025-10-18T00:55:22,487   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/79/45/b10fcce619623269182392859c7d4de1df939aa6e0a58bf18e01e66e9a0b/MDAnalysis-2.6.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,487   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ce/3a/500da42d4396e3a6e05cdd8aa9fcb4f1642ffded3e3e1bc1920804eb1969/MDAnalysis-2.6.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,488   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8f/0b/a941f3e533117111e546b611aa234b6cf208dd209a0f58115b0861cd44af/MDAnalysis-2.6.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,489   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/a4/91/f997fe2ee6f6eda73cdbc97c3dc266ab8ea661bae1136e784e01ec2187e7/MDAnalysis-2.6.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,489   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/3f/51/7c5790085f4d61211b38872cce7217bdfb46fa28f7247d7e565f67521645/MDAnalysis-2.6.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,490   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ea/0f/6dc7ec68db8c42b0703fb7bb15885ac607e1f0f09f5a9c134035353629fe/MDAnalysis-2.6.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,490   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/e3/58/d738cb229e6e908f37bd5b2d2cd9e947dff78b18178f971a9803c367b140/MDAnalysis-2.6.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,491   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/56/07/c51e53ba655c3996993ed048b27b2ad472098ff111e140beddfa0f87a664/MDAnalysis-2.6.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,491   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8d/1f/662db1dc5887f1c7c0ed9022bb22c3dff8106efd74c7a589597260da3dcd/MDAnalysis-2.6.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,492   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/e7/05/65e89dac4c27984d8c2b555e104aed258db02f8141ecea64422771c63a75/MDAnalysis-2.6.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,493   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/1f/19/fe06d9d3a491eec7615d1a6b9804fd2b2f4f262a22cd1229eced619deb72/MDAnalysis-2.6.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,493   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ad/22/7fbf313b9bcb3fe390da1eaaeecb542f52a8abdd09dc94c106a8a30ac505/MDAnalysis-2.6.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,494   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/4b/0e/8064c23b5cfab15a07c5669d72fb94bcf73b69ac36018073b9521760e21c/MDAnalysis-2.6.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,494   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/91/40/c86f37f0bc281f1002e7f800acd1747c50b1b0cfe25beaba543e3a9f0104/MDAnalysis-2.6.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,495   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/a6/35/cf1c6a669eabb4e6b9c66e5f60214eef0d111c82dca16c265afd9a1f61e5/MDAnalysis-2.6.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,495   Found link https://files.pythonhosted.org/packages/b8/1b/12f34fc28e41c12d05f299012fed63cedf2d733057ca5ea7ef1854efb027/MDAnalysis-2.6.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9), version: 2.6.0
2025-10-18T00:55:22,496   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/d3/17/9f60da41a30036dce229edf049995eec74aa62713b0d9648ed5f9aec3bad/MDAnalysis-2.6.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,497   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b3/e3/07df8ad49734110f5fde7698259ae1e9469b54f5e5f81f7a1ce217b61a5f/MDAnalysis-2.6.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,497   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/fe/0a/bf186c0bc8332962a4e9085eafc5dd7672289453bf49c8daba95523e1e94/MDAnalysis-2.6.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,498   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/90/c6/c2ec55f7ef4a7fe1120ded656bdc8cbac9172c242d440d0cf4e3aac956ca/MDAnalysis-2.6.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,498   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/23/48/8f3d9538d15909542fa6db82eff31fc29da0a11978dcb92dcb49c315e2f6/MDAnalysis-2.6.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,499   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c5/03/259de57764f65bba1e380628a2db0c5b4983d7644a3a294e31bd3d346792/MDAnalysis-2.6.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,499   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c1/34/7542d1f4ff58828d33500c4b7f93948131797a8fa193e1943090ef21157e/MDAnalysis-2.6.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,500   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/7b/c2/a7a75fa0aad84a812a79c75f043c2f866c3b976403516aebccc8bfac4df0/MDAnalysis-2.6.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,501   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bf/5d/f07ae9f2294615f400bf49bd77efa0c0a44c653b50983cdf5e560f0e6da5/MDAnalysis-2.6.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,501   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c4/09/f583d8a7cca23c493d89f85c4e82608c4ab20e47be9932c0ae508104d52d/MDAnalysis-2.6.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,501   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/90/72/8c70e522431b5ecefd01c6c652004836ff41310e901db9f4671604f2a59d/MDAnalysis-2.6.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,502   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/06/0b/61f82278421c83499ca33e31d59b033c9302e32f99b9bf5cb6aa9acf9e54/MDAnalysis-2.6.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,503   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f0/36/8d4a1d03188661563696e0c666a9bb3d1907c0acae4e518f495143380f8e/MDAnalysis-2.6.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,503   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/a7/48/c66fa9381aa89165f6d732f71103f39bfd42f8b6bfc7c901b9973b435344/MDAnalysis-2.6.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,504   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/cd/f4/9ad2217466d523c3285bae9610041e407c8d5ad7582b2783a553a38d07d6/MDAnalysis-2.6.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,505   Found link https://files.pythonhosted.org/packages/c0/2a/ac39b12836ef0d27937b4765d8e17b09b94f7de9092d4cf657dd336f2663/MDAnalysis-2.6.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9), version: 2.6.1
2025-10-18T00:55:22,505   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ff/da/ba9ab45fa9a082834cd4b3ca8cede9ba3e23aa03bb8867a33e1d623489fa/MDAnalysis-2.7.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,506   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/31/70/22ff9aa6b28b87f4a1b64d07d008ec6a7ef6f53d3251b41bdf0b35eecbd0/MDAnalysis-2.7.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,507   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c4/37/b0d4fc7e712feb13fe95fb1250805388f1e366fd4fdaa247025e579d2676/MDAnalysis-2.7.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,507   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/55/22/bbca0189de20e3db885fea4489b4566454402639d4c9d8897c4b7d221775/MDAnalysis-2.7.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,508   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/77/59/2907931e82c2ca834a5a8128b792aec2475fee0f9a0fcef1ec7aa68f5fb7/MDAnalysis-2.7.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,508   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/12/61/90e5be61437b90106f07f05f61b794b4694313f30c59a5c15a00ae65800b/MDAnalysis-2.7.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,509   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/62/d1/7dcc25e742929fb49fcb72c2822d3d00a24b48ba786e8833882883d2c72d/MDAnalysis-2.7.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,509   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/0d/3c/e9982ef4e0ffb376defe9ddac248cb49093a3eb7e32d11d517aa65faa32f/MDAnalysis-2.7.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,510   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b1/b7/8283e114b1addda0ec0ff13171655254bc47cee9b2d57b4ca72d6f70ed47/MDAnalysis-2.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,510   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/86/4d/19a9e60893044ce103ed9def619e7916ff8f341b1f967a1b7767f08c969a/MDAnalysis-2.7.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,511   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c1/0a/59a809a628abfebc38d55b3db39bdd42bc96bbcdd9adc3c93de017568c29/MDAnalysis-2.7.0-cp312-cp312-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,512   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/d5/45/2309365fa1ec351788ed3c21725f1268613c988db0597efcce32a5b982e2/MDAnalysis-2.7.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,512   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ff/c3/c97adab6fefa4b68a74a7408706f9eb2c49764a71caecba10c035c04ceeb/MDAnalysis-2.7.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,513   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f3/96/96574e2c7daae1bbb245480682c3e625e46933bcc95102385ea375566a60/MDAnalysis-2.7.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,513   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/58/45/756cd590d7bbd2056471534d2fba26f984fcb982b1fbf5caba865ac3ef01/MDAnalysis-2.7.0-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,514   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8d/c1/fefe27a9c75d67100c8417378811b1845dc57bc1e9a8ed3edac2c3d39e70/MDAnalysis-2.7.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,514   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/01/23/312ce77181799b5cbad48ff1857e009345a09072bd7ee39ea99815dde44e/MDAnalysis-2.7.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,515   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/95/e3/81606a3f65d2a3ed7e8494cb00edd1461e54b16c37e61e99db17041753eb/MDAnalysis-2.7.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,515   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8e/79/b2731e5db9fa512ce12ebe9696a8ea6b1df2aa3495797dee92e92e1dacaf/MDAnalysis-2.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,516   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c6/03/8bdabb256d010f73fc94102264b8b2cb9018000a797a88561815743d3eee/MDAnalysis-2.7.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,517   Found link https://files.pythonhosted.org/packages/3e/67/c4ec984d4648c2435717fe8f35c54f22d6375eb0383060f8ebc21587bd13/MDAnalysis-2.7.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9), version: 2.7.0
2025-10-18T00:55:22,517   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ae/9a/8a0ea91b457fc22ef068877748834ed08692333c1e8d8fb4feff65c0d2a0/MDAnalysis-2.8.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,518   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/18/dd/79a81904fd32099226cdd67714d68fc0e7d97c0a83906c34b5126b505341/MDAnalysis-2.8.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,519   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ae/5a/233c996fcc3b1007edcbdc244902af3613c5bfc37b3223ac80f71083c7d2/MDAnalysis-2.8.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,519   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/80/13/3ca04d191505af9d0cd1a6b7a5e42fae48eaa626436251411f378172c8fb/MDAnalysis-2.8.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,520   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/cd/fe/361b71502f1bc58820226ca9a3ab8db266d6a8c57f04f38ff6c3a18dcf64/MDAnalysis-2.8.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,520   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/10/1f/8731cd890ed25c0bafe5f467bab95f3087e0166f9a6ce75930d36ef482aa/MDAnalysis-2.8.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,521   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/74/f9/f58f1a37ce0ae03ab481ca1169bee89f08961597d04987535dd1cbb7020d/MDAnalysis-2.8.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,521   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/7f/58/1e6fb0bd0c86f8625cfec5071563d9e92d0e8ac5c8a9967343735f248db7/MDAnalysis-2.8.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,522   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/78/b2/1ec0d2e05ad1f48d7f18bd71c464b9be44db3fd49b4300a7ff2a96f1e597/MDAnalysis-2.8.0-cp312-cp312-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,523   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/74/97/1979e8dd81cf645c65a247d24d1d12336ba9f0f6b5670179b3b422dca1b7/MDAnalysis-2.8.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,523   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/de/0d/eff6f0f900974c491e648937f64d24ef2d1eaf0a949791891baa015c4933/MDAnalysis-2.8.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,524   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c0/4c/f83c79162028777aade5fb490fdb8075f747bc12c8b4ada00a85c0d2e934/MDAnalysis-2.8.0-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,524   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ae/db/4a4af48b2982f22c233a0cb7bb9578a2b56ff63b1f6e6bce30c7b7b83eef/MDAnalysis-2.8.0-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,525   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b3/52/1c07900c2fe09574b0a8c5d84474c19363f7d21c40e1649da0bd3c8366fd/MDAnalysis-2.8.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,525   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/eb/2a/47f3c552f878d17f6ce30319bb831797b6dfcd140368ef49c3507383418c/MDAnalysis-2.8.0-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,526   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/be/a2/13102f206d842a968086c6d61639190dd0ab455dc96223c9483cd60547fd/MDAnalysis-2.8.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,526   Found link https://files.pythonhosted.org/packages/d8/f3/2844f00f3fa21c8ca9086661ffe6557798528e1c5464704886c7aa7088ec/mdanalysis-2.8.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10), version: 2.8.0
2025-10-18T00:55:22,527   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/36/b5/4e50bf4bc63dbf51ea3f6371ab8f27ef6e49f2a295d0a873e0093e16a71d/mdanalysis-2.9.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,528   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8f/f6/5e6ee36b67d55749f6c8c60a5eceb019f31c4a077e1fa45e807e2896e665/mdanalysis-2.9.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,528   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/2c/7d/e8fa40165c3e84f179cc1176b43c0177de1507fb5f518e6c30ba9d1c7569/mdanalysis-2.9.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,529   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/4a/98/c9a6b2d8fb0abefe3f512518fecb5497de106ced1ce9cc62b6ba40702926/mdanalysis-2.9.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,529   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/0f/e7/d6847d62dcddb2840c34a2a5b1c11719a6555960870bd30009bd28785af3/mdanalysis-2.9.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,530   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b2/f9/22d172baaa9f7835e3bff8cc47556994e847706f9674b3d885017da670c4/mdanalysis-2.9.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,531   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/79/0a/4a188b1027da4335f9fda8ed4a57e16bfdc8c0bcd24a3538b88cd32bfbb1/mdanalysis-2.9.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,531   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/36/9e/686eb5e6b8d251ae1659a9e1bca01271eaeef3309cc3c17f54f6254d87b7/mdanalysis-2.9.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,532   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/49/bd/6c15e33c08e8a15d9526d3662317bee73623340571cae32be3ee3c9bcc6b/mdanalysis-2.9.0-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,532   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/38/a1/75f01707e41c30191908d134ea4917d3d6bdd3a525b59283e8970b57969a/mdanalysis-2.9.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,533   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/a2/4f/31c87a03b0ae25fd9315704167d565a942cacca446fcbaf76a669c6e85d2/mdanalysis-2.9.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,533   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/0b/a7/043d4f83baef204b943aa95c2f4defc3f70a86dd17969394b6702b3c361d/mdanalysis-2.9.0-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,534   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b6/4c/a8ab61891fdd0fe49528e202d14ac6b3f4bb1adc11dff5f00b0509f4c38e/mdanalysis-2.9.0-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,534   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f6/9c/7fe12c2da25071a61e05bc17615ea9d8bd2069ec6c5f5268899133c411f8/mdanalysis-2.9.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,535   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f1/37/2860b0c101b6037023c0b6decb8893f382d765dbe969a139f933d6551eb3/mdanalysis-2.9.0-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,535   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/40/21/a968e3a3bd65d5b285c2c0ea2b8044f82c3e576bd4d28a2b7cb04b07abba/mdanalysis-2.9.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,536   Found link https://files.pythonhosted.org/packages/9e/0b/ad2805c66246cbc9b7dca5a086316da0687135b5c6786da7b75ea9e1622d/mdanalysis-2.9.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.10), version: 2.9.0
2025-10-18T00:55:22,537   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/98/78/cef6167bd590e482f03f07554db29d56bbb847ff8be80a0ebc9303234714/mdanalysis-2.10.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.11)
2025-10-18T00:55:22,538   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/6c/58/5876a6574fde15fd205138cb570460a01b14f4462b1c3305db62f5f0b284/mdanalysis-2.10.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.11)
2025-10-18T00:55:22,538   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/11/be/8930c437148dd10f09c8c66d609647f19d7c065c4893bb99e3899148e3ed/mdanalysis-2.10.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.11)
2025-10-18T00:55:22,539   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/56/76/a9925d9bcffb34f9acb162d400f4678356871112975c78452ac631bd04fe/mdanalysis-2.10.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.11)
2025-10-18T00:55:22,539   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/57/8c/8d037a8010e92959631fa05811df43e4710b8e828bd18ea3da73189d5ce8/mdanalysis-2.10.0-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.11)
2025-10-18T00:55:22,540   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/08/e8/baae856d6764901cd13fe928cd4086ed755ae22f66928301a9327a4a2a3e/mdanalysis-2.10.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.11)
2025-10-18T00:55:22,540   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/4c/16/ad7fc0f8948075b9ab7f6957519492e861b2f16469f1ab0a916f7c3c4243/mdanalysis-2.10.0-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.11)
2025-10-18T00:55:22,541   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/61/1e/9952ca31d73d21a01f3499228274ae637ad1ff2f678a935b39711fdc9898/mdanalysis-2.10.0-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.11)
2025-10-18T00:55:22,541   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c6/1c/6395e15678f1650a2d59d4b1142514bbc5fbf670bfab9d4c93c8b54a425e/mdanalysis-2.10.0-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.11)
2025-10-18T00:55:22,542   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/58/0d/8572a9688ee913dbe3f5578b69dc8e4c58bcf086c7a8676ba99a61f9e8e0/mdanalysis-2.10.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.11)
2025-10-18T00:55:22,542   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f8/8e/bfa3cf758f479a910fdf474193ef73e7c8e9380b3a96fe127c64853f0307/mdanalysis-2.10.0-cp313-cp313-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.11)
2025-10-18T00:55:22,543   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/d7/95/dfcd59a9e99fd67335cfb77c9e6f24a8b5db38b3c0cf3b18f3f7bd7c2325/mdanalysis-2.10.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.11)
2025-10-18T00:55:22,543   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/85/31/621980971edbed31c17f65209adc8da32a45aef0e3bb0a1f5ad2e150820e/mdanalysis-2.10.0-cp314-cp314-macosx_10_13_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.11)
2025-10-18T00:55:22,544   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/5f/35/825d14ce918e3445e2f4da9dbc1488fcc77970031ed3e3fb5684fbf9753b/mdanalysis-2.10.0-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.11)
2025-10-18T00:55:22,545   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/52/b5/b7cbae73988bf7868009980c66a5d74725c99d2e2f11e0a566d0219ae53d/mdanalysis-2.10.0-cp314-cp314-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.11)
2025-10-18T00:55:22,545   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/1d/64/b14c5b438b6334a0d331ff88081c4dd0ca12f618e725610d3f3ebf6b8aed/mdanalysis-2.10.0-cp314-cp314-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.11)
2025-10-18T00:55:22,546   Found link https://files.pythonhosted.org/packages/bc/eb/1ef9da97c43184f6c1c2b0a224cab574f82dcb39d930808f971feb4f2a3f/mdanalysis-2.10.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.11), version: 2.10.0
2025-10-18T00:55:22,547 Fetching project page and analyzing links: https://www.piwheels.org/simple/mdanalysis/
2025-10-18T00:55:22,548 Getting page https://www.piwheels.org/simple/mdanalysis/
2025-10-18T00:55:22,549 Found index url https://www.piwheels.org/simple
2025-10-18T00:55:22,703 Fetched page https://www.piwheels.org/simple/mdanalysis/ as text/html
2025-10-18T00:55:22,738   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/mdanalysis-2.9.0-cp311-cp311-linux_armv6l.whl#sha256=e729cbf6ebacfa98f00623b238dee4ca1d01042c1ba462332caa5a2715d73042 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,738   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/mdanalysis-2.9.0-cp311-cp311-linux_armv7l.whl#sha256=e729cbf6ebacfa98f00623b238dee4ca1d01042c1ba462332caa5a2715d73042 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,739   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.8.0-cp311-cp311-linux_armv6l.whl#sha256=bd77686343ec2b542e829f2592d07fe8c045e5649dea5ffc93e805ce7a91a337 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,739   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.8.0-cp311-cp311-linux_armv7l.whl#sha256=bd77686343ec2b542e829f2592d07fe8c045e5649dea5ffc93e805ce7a91a337 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.10)
2025-10-18T00:55:22,740   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.7.0-cp311-cp311-linux_armv6l.whl#sha256=8aa38f9104f0be623b8568194bc3ea304e3ea0f75a86d5ff7006d25174093611 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,741   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.7.0-cp311-cp311-linux_armv7l.whl#sha256=8aa38f9104f0be623b8568194bc3ea304e3ea0f75a86d5ff7006d25174093611 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,741   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.7.0-cp39-cp39-linux_armv6l.whl#sha256=96d4510be344d8fa653703fb5edb4997905f012155f4f04541f7eb411f16e86a (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,742   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.7.0-cp39-cp39-linux_armv7l.whl#sha256=96d4510be344d8fa653703fb5edb4997905f012155f4f04541f7eb411f16e86a (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,742   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.1-cp39-cp39-linux_armv6l.whl#sha256=00c43ef1479c539475a06a2e034c1c76c8d128876384a8a1a6ed9dd4c47c2670 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,743   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.1-cp39-cp39-linux_armv7l.whl#sha256=00c43ef1479c539475a06a2e034c1c76c8d128876384a8a1a6ed9dd4c47c2670 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,743   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.1-cp311-cp311-linux_armv6l.whl#sha256=d5d44fe745731a30207cb8cdcc25a38c9f7c192ed28c4ee4d1ca0587e586afd7 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,744   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.1-cp311-cp311-linux_armv7l.whl#sha256=d5d44fe745731a30207cb8cdcc25a38c9f7c192ed28c4ee4d1ca0587e586afd7 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,744   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.0-cp39-cp39-linux_armv6l.whl#sha256=85cf13c9a14a89cd6241fa6ce79a1f99fb90a3fd801d521f9f31f0ba54b6ff8a (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,745   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.0-cp39-cp39-linux_armv7l.whl#sha256=85cf13c9a14a89cd6241fa6ce79a1f99fb90a3fd801d521f9f31f0ba54b6ff8a (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,745   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.0-cp311-cp311-linux_armv6l.whl#sha256=bf50be23fc8c77d9917f763095841e41ba3c4771b7fcf334de7ab781a1f2c371 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,746   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.0-cp311-cp311-linux_armv7l.whl#sha256=bf50be23fc8c77d9917f763095841e41ba3c4771b7fcf334de7ab781a1f2c371 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,746   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.5.0-cp39-cp39-linux_armv6l.whl#sha256=332587d7301732247bb5add53a9b3eff4921e3c9b5f24b22f5067a668ddc4249 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,747   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.5.0-cp39-cp39-linux_armv7l.whl#sha256=332587d7301732247bb5add53a9b3eff4921e3c9b5f24b22f5067a668ddc4249 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,747   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.5.0-cp311-cp311-linux_armv6l.whl#sha256=a1251737cd1fdbc9997137e29146ccff57d61da46bcc255c4fb63bd08840f2a3 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,748   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.5.0-cp311-cp311-linux_armv7l.whl#sha256=a1251737cd1fdbc9997137e29146ccff57d61da46bcc255c4fb63bd08840f2a3 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2025-10-18T00:55:22,749   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.3-cp39-cp39-linux_armv6l.whl#sha256=385768a1cbe3cb8f6dabd63687b4e5ed03a5bb6c39ab90c5b75914881d468334 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,749   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.3-cp39-cp39-linux_armv7l.whl#sha256=385768a1cbe3cb8f6dabd63687b4e5ed03a5bb6c39ab90c5b75914881d468334 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,750   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.2-cp39-cp39-linux_armv6l.whl#sha256=05d70a930acb47af383673c351e087e42ab57747d7e0f7f9d72f448abf991dce (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,750   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.2-cp39-cp39-linux_armv7l.whl#sha256=05d70a930acb47af383673c351e087e42ab57747d7e0f7f9d72f448abf991dce (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,751   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.1-cp39-cp39-linux_armv6l.whl#sha256=f6908b1d7ccb4f424abc3a05af2e41727e6d4b0a4fdb40f03dd0286a667f100f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,751   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.1-cp39-cp39-linux_armv7l.whl#sha256=f6908b1d7ccb4f424abc3a05af2e41727e6d4b0a4fdb40f03dd0286a667f100f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,752   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.0-cp39-cp39-linux_armv6l.whl#sha256=89a99e9094d9455640680119bc09e7ea680423ed644c57a199c1f2c083589a01 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,752   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.0-cp39-cp39-linux_armv7l.whl#sha256=89a99e9094d9455640680119bc09e7ea680423ed644c57a199c1f2c083589a01 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,753   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.3.0-cp39-cp39-linux_armv6l.whl#sha256=954b2d003fe675d5b27a743a9345ee42bd958991591afd1dee95b8aacf8314d0 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,753   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.3.0-cp39-cp39-linux_armv7l.whl#sha256=954b2d003fe675d5b27a743a9345ee42bd958991591afd1dee95b8aacf8314d0 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,754   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.2.0-cp39-cp39-linux_armv6l.whl#sha256=4d852c41177612532ba7f7ec2627465cdaa02e4f2d480c72586209ed68e9827f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,754   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.2.0-cp39-cp39-linux_armv7l.whl#sha256=4d852c41177612532ba7f7ec2627465cdaa02e4f2d480c72586209ed68e9827f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2025-10-18T00:55:22,755   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp37-cp37m-linux_armv6l.whl#sha256=15211cf0c7bf4819d9c48762d3c10d7541b273818dfe16cade585528469acb6e (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2025-10-18T00:55:22,755   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp37-cp37m-linux_armv7l.whl#sha256=15211cf0c7bf4819d9c48762d3c10d7541b273818dfe16cade585528469acb6e (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2025-10-18T00:55:22,756   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp39-cp39-linux_armv6l.whl#sha256=d9556ba8add30ef268b271c12910975221cca955af752f664094b594c5290f82 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2025-10-18T00:55:22,757   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp39-cp39-linux_armv7l.whl#sha256=d9556ba8add30ef268b271c12910975221cca955af752f664094b594c5290f82 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2025-10-18T00:55:22,757   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=87407fa5dde4f05cd7b764dacc7ed05d672fdc5965332ce5d91d62d081ccbfc7 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2025-10-18T00:55:22,758   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=87407fa5dde4f05cd7b764dacc7ed05d672fdc5965332ce5d91d62d081ccbfc7 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2025-10-18T00:55:22,758   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=565f74ce6e9dd72729736ca534c18c243dfa384a984c24dd759f1a263cd3c98c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2025-10-18T00:55:22,759   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=565f74ce6e9dd72729736ca534c18c243dfa384a984c24dd759f1a263cd3c98c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2025-10-18T00:55:22,759   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp37-cp37m-linux_armv6l.whl#sha256=331239f905d05b614d662e8a60615f80c2611d8f6ea8f3e256a0cbcefdf53191 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,760   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp37-cp37m-linux_armv7l.whl#sha256=331239f905d05b614d662e8a60615f80c2611d8f6ea8f3e256a0cbcefdf53191 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,760   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp39-cp39-linux_armv6l.whl#sha256=6faa74b3b1a64cdd53a1313f3ecf13a260e99df077e63a45b273edd2b5afc680 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,761   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp39-cp39-linux_armv7l.whl#sha256=6faa74b3b1a64cdd53a1313f3ecf13a260e99df077e63a45b273edd2b5afc680 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,761   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=636760cd892a8524f5912fafc58d29ffcce61acbd8730c7c69a3e922a164476f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2025-10-18T00:55:22,762   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=636760cd892a8524f5912fafc58d29ffcce61acbd8730c7c69a3e922a164476f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2025-10-18T00:55:22,762   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.0-cp37-cp37m-linux_armv6l.whl#sha256=9693d11a44eeb74415f6614dca0791bfe7f0cf24552a0ed3d17c133ff5b361ef (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2025-10-18T00:55:22,763   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.0-cp37-cp37m-linux_armv7l.whl#sha256=9693d11a44eeb74415f6614dca0791bfe7f0cf24552a0ed3d17c133ff5b361ef (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2025-10-18T00:55:22,764   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=1214ca3490e50243b48350c6c6a2c89b77cce8f1cd72f6d2549860b3db1ad84c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2025-10-18T00:55:22,764   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=1214ca3490e50243b48350c6c6a2c89b77cce8f1cd72f6d2549860b3db1ad84c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2025-10-18T00:55:22,765   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=1368159b6134befa021a6536dcc02e047dc27b4c4672ae7f3b2f8e1559b43f8e (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,765   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=1368159b6134befa021a6536dcc02e047dc27b4c4672ae7f3b2f8e1559b43f8e (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,766   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp35-cp35m-linux_armv7l.whl#sha256=b669220c967a8cc746ae35c931d22da666f540595d1e9a9c3bb620effa9205b3 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,766   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp35-cp35m-linux_armv6l.whl#sha256=b669220c967a8cc746ae35c931d22da666f540595d1e9a9c3bb620effa9205b3 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,767   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp34-cp34m-linux_armv6l.whl#sha256=73adf04061df9ef3a9987e05113ccef5654aba2f3d2a3fe680ad590a76b2cd4c (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,768   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp34-cp34m-linux_armv7l.whl#sha256=73adf04061df9ef3a9987e05113ccef5654aba2f3d2a3fe680ad590a76b2cd4c (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,768   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=e43dbbd4ecd06fb475d80e5dae571708415e1287e6dd2c669c98095e13ea2ae8 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,769   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=e43dbbd4ecd06fb475d80e5dae571708415e1287e6dd2c669c98095e13ea2ae8 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,769   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp35-cp35m-linux_armv6l.whl#sha256=dafe9f34f8fc19527a5e2ebbe3080bfa1e89a5ceb160e8a52bf3ca2a9dce6442 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,770   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp35-cp35m-linux_armv7l.whl#sha256=dafe9f34f8fc19527a5e2ebbe3080bfa1e89a5ceb160e8a52bf3ca2a9dce6442 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,770   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp37-cp37m-linux_armv7l.whl#sha256=51964d1254a62b7b673ddfa8ce4eb6616d3b13f1ea26702fc5ba1ea0a2d30696 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,771   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp37-cp37m-linux_armv6l.whl#sha256=51964d1254a62b7b673ddfa8ce4eb6616d3b13f1ea26702fc5ba1ea0a2d30696 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,772   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp39-cp39-linux_armv6l.whl#sha256=89f6feff5fc44ebffd65aa746c268db44a975620306dfebc09a8e7b8e9d5e4da (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,772   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp39-cp39-linux_armv7l.whl#sha256=89f6feff5fc44ebffd65aa746c268db44a975620306dfebc09a8e7b8e9d5e4da (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,772   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp37-cp37m-linux_armv6l.whl#sha256=9b6fa10f5b5f2473db79f5704fbfc697f53d7c356f152ba8d80c761e63acbed7 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,773   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp37-cp37m-linux_armv7l.whl#sha256=9b6fa10f5b5f2473db79f5704fbfc697f53d7c356f152ba8d80c761e63acbed7 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,773   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp35-cp35m-linux_armv7l.whl#sha256=0f4e4569bec6b9d3d93de52938352429f2e85e568b7f35bd3a69f0a111ded689 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,774   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp35-cp35m-linux_armv6l.whl#sha256=0f4e4569bec6b9d3d93de52938352429f2e85e568b7f35bd3a69f0a111ded689 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,774   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp39-cp39-linux_armv6l.whl#sha256=71f4f4953090bbbbafab4e8e5f1af9286acd1dbe6863f95771e62ca51d6772be (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,775   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp39-cp39-linux_armv7l.whl#sha256=71f4f4953090bbbbafab4e8e5f1af9286acd1dbe6863f95771e62ca51d6772be (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,776   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp35-cp35m-linux_armv7l.whl#sha256=eb34e69945631c173f5b4ad0378dcf44bf0760fc8f90c68501d757ed9b6203f3 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,776   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp35-cp35m-linux_armv6l.whl#sha256=eb34e69945631c173f5b4ad0378dcf44bf0760fc8f90c68501d757ed9b6203f3 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,777   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp37-cp37m-linux_armv6l.whl#sha256=10a68d03d53e547d0cd2b7be40ec9af8591482bb43aeb5aad582f8a4926205b1 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,777   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp37-cp37m-linux_armv7l.whl#sha256=10a68d03d53e547d0cd2b7be40ec9af8591482bb43aeb5aad582f8a4926205b1 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,778   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp35-cp35m-linux_armv6l.whl#sha256=813d426b8a410f1c2297d31517407d5684acd025090423a79196237743514a41 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,778   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp35-cp35m-linux_armv7l.whl#sha256=813d426b8a410f1c2297d31517407d5684acd025090423a79196237743514a41 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,779   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp34-cp34m-linux_armv7l.whl#sha256=20c2668ada02b91f1fde53c86ba8f14bcf3690458546f09a9fe1694ce814ad54 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,780   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp34-cp34m-linux_armv6l.whl#sha256=20c2668ada02b91f1fde53c86ba8f14bcf3690458546f09a9fe1694ce814ad54 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,780   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp37-cp37m-linux_armv7l.whl#sha256=82dd02ba237b4261c0f0d1f180ee08cda6cd1c25871e12db138518ab9f8ca8a6 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,781   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp37-cp37m-linux_armv6l.whl#sha256=82dd02ba237b4261c0f0d1f180ee08cda6cd1c25871e12db138518ab9f8ca8a6 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,781   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp34-cp34m-linux_armv6l.whl#sha256=2182ab1095b6fb7758816fb8041d325e39216149dd9cc19f98b2394392a14f1b (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,782   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp34-cp34m-linux_armv7l.whl#sha256=2182ab1095b6fb7758816fb8041d325e39216149dd9cc19f98b2394392a14f1b (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,782   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp35-cp35m-linux_armv7l.whl#sha256=426923348f9332d0762be3c94068ab6f54e143815453ae85d2a749e77e4226f7 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,783   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp35-cp35m-linux_armv6l.whl#sha256=426923348f9332d0762be3c94068ab6f54e143815453ae85d2a749e77e4226f7 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,783   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp37-cp37m-linux_armv6l.whl#sha256=12656c0ac065200b557f80654ef49efaf3e7605ed9abdb94875f64143616f41d (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,784   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp37-cp37m-linux_armv7l.whl#sha256=12656c0ac065200b557f80654ef49efaf3e7605ed9abdb94875f64143616f41d (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,784   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp34-cp34m-linux_armv6l.whl#sha256=9ed92944cd4b3322d05b9a4bb840fe590ed3be07609a93ffb09fe1f760ac363d (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,785   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp34-cp34m-linux_armv7l.whl#sha256=9ed92944cd4b3322d05b9a4bb840fe590ed3be07609a93ffb09fe1f760ac363d (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,786   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp35-cp35m-linux_armv6l.whl#sha256=66b3e7f35c28b424a6ad19307554c223ebc24916dddb557dbd08762989c32119 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,786   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp35-cp35m-linux_armv7l.whl#sha256=66b3e7f35c28b424a6ad19307554c223ebc24916dddb557dbd08762989c32119 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,787   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp37-cp37m-linux_armv7l.whl#sha256=07e291f5c3ee08d16b280c629411107ae1984f33458036e3418429e5f1a33092 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,787   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp37-cp37m-linux_armv6l.whl#sha256=07e291f5c3ee08d16b280c629411107ae1984f33458036e3418429e5f1a33092 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,788   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp37-cp37m-linux_armv6l.whl#sha256=bff2b2b18becae8ee1095f65c6e0d35f33fbc31544d3a12e9ab41bcdb6a775ce (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,788   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp37-cp37m-linux_armv7l.whl#sha256=bff2b2b18becae8ee1095f65c6e0d35f33fbc31544d3a12e9ab41bcdb6a775ce (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,789   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp34-cp34m-linux_armv7l.whl#sha256=ca0488c00e0be959cac05340ae1deb148c2769996e5abb346ad3a7487c2193d1 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,789   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp34-cp34m-linux_armv6l.whl#sha256=ca0488c00e0be959cac05340ae1deb148c2769996e5abb346ad3a7487c2193d1 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,790   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp35-cp35m-linux_armv7l.whl#sha256=58492c63068e648dfb1879b19f1fa55e6e3b9589ee9141eda53c4aed5a915136 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,791   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp35-cp35m-linux_armv6l.whl#sha256=58492c63068e648dfb1879b19f1fa55e6e3b9589ee9141eda53c4aed5a915136 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,791   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp35-cp35m-linux_armv7l.whl#sha256=28e395835220893e8a10d101072b742e6401a4376ddfacc41e30572d8aa6ed65 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,792   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp35-cp35m-linux_armv6l.whl#sha256=28e395835220893e8a10d101072b742e6401a4376ddfacc41e30572d8aa6ed65 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,793   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp34-cp34m-linux_armv7l.whl#sha256=e959b452e988fe4a9b8459143d6a64eef168bc3b9355a04b20ba20c4bb1bf601 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,793   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp34-cp34m-linux_armv6l.whl#sha256=e959b452e988fe4a9b8459143d6a64eef168bc3b9355a04b20ba20c4bb1bf601 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,794   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp34-cp34m-linux_armv7l.whl#sha256=985988f3d88079fe20f14ddee546fbb7b13e2a70dbeb4ac10c0f38f45afa7261 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,795   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp34-cp34m-linux_armv6l.whl#sha256=985988f3d88079fe20f14ddee546fbb7b13e2a70dbeb4ac10c0f38f45afa7261 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,795   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp35-cp35m-linux_armv6l.whl#sha256=933bf37f65e3ae59c832a6798365a3da99432510fcfc802e2d6eaa48db3a7261 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,795   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp35-cp35m-linux_armv7l.whl#sha256=933bf37f65e3ae59c832a6798365a3da99432510fcfc802e2d6eaa48db3a7261 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,796   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp34-cp34m-linux_armv7l.whl#sha256=34198e0f9e509df1779c2255812cee0f720dc8e989c7d4b7196337f75f1ef51b (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,796   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp34-cp34m-linux_armv6l.whl#sha256=34198e0f9e509df1779c2255812cee0f720dc8e989c7d4b7196337f75f1ef51b (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,797   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp35-cp35m-linux_armv6l.whl#sha256=032867bf17eecd5fd249607198ad5c191fac901f2856d5a485ffc53a8eb687d4 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,797   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp35-cp35m-linux_armv7l.whl#sha256=032867bf17eecd5fd249607198ad5c191fac901f2856d5a485ffc53a8eb687d4 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,798   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp35-cp35m-linux_armv6l.whl#sha256=04685acd7ab3d9f580c6dccdc18dfa33d89ea596521eede98bef2ec3f8f58af7 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,798   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp35-cp35m-linux_armv7l.whl#sha256=04685acd7ab3d9f580c6dccdc18dfa33d89ea596521eede98bef2ec3f8f58af7 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,799   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp34-cp34m-linux_armv7l.whl#sha256=30c2bb9cf26e969dbdc8978bd4710e9e8a42ee42ed7c9ad506c63a0855448307 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,800   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp34-cp34m-linux_armv6l.whl#sha256=30c2bb9cf26e969dbdc8978bd4710e9e8a42ee42ed7c9ad506c63a0855448307 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,800   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp34-cp34m-linux_armv7l.whl#sha256=527918d821e76043cda119ee29aa26b835f8f85251d560d47616e9147b5a1539 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,801   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp34-cp34m-linux_armv6l.whl#sha256=527918d821e76043cda119ee29aa26b835f8f85251d560d47616e9147b5a1539 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,801   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp35-cp35m-linux_armv7l.whl#sha256=b9d6e5734efb33b9383183904d491de8ef28aeeac7bbfdd617d48084126af113 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,802   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp35-cp35m-linux_armv6l.whl#sha256=b9d6e5734efb33b9383183904d491de8ef28aeeac7bbfdd617d48084126af113 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,802   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp35-cp35m-linux_armv6l.whl#sha256=46ca86446af4c56b5805a1cb36dd77ac64d009abb5500878ea4fa26320c7ba43 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,803   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp35-cp35m-linux_armv7l.whl#sha256=46ca86446af4c56b5805a1cb36dd77ac64d009abb5500878ea4fa26320c7ba43 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,803   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp34-cp34m-linux_armv7l.whl#sha256=89151b95fc0cd948f7a2d1d660b8c2453a612a752a2a2d7d8fb6d169ff2782d4 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,804   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp34-cp34m-linux_armv6l.whl#sha256=89151b95fc0cd948f7a2d1d660b8c2453a612a752a2a2d7d8fb6d169ff2782d4 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,804   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp37-cp37m-linux_armv6l.whl#sha256=a073eda71f157be82bd9b81ac12793e63834dde1ac9b63ca704668a88b025c1e (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,805   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp37-cp37m-linux_armv7l.whl#sha256=a073eda71f157be82bd9b81ac12793e63834dde1ac9b63ca704668a88b025c1e (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,805   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp39-cp39-linux_armv6l.whl#sha256=ef25ee9269f3b7f8ab95f1c3c563c39740fd2b7801df49d6be7e702c7db7f8fc (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,806   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp39-cp39-linux_armv7l.whl#sha256=ef25ee9269f3b7f8ab95f1c3c563c39740fd2b7801df49d6be7e702c7db7f8fc (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,807   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp35-cp35m-linux_armv6l.whl#sha256=47de147e5ee68a99b75107632aaa1e3bf84b4fa1f5bd7a456c1537266d437fbb (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,807   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp35-cp35m-linux_armv7l.whl#sha256=47de147e5ee68a99b75107632aaa1e3bf84b4fa1f5bd7a456c1537266d437fbb (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,808   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp34-cp34m-linux_armv7l.whl#sha256=a0ddeb70a574aee9a5c491f2da635dc26e5e5b2b4cac7d8abbbffb3c1b4c7a8a (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,808   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp34-cp34m-linux_armv6l.whl#sha256=a0ddeb70a574aee9a5c491f2da635dc26e5e5b2b4cac7d8abbbffb3c1b4c7a8a (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,809   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp35-cp35m-linux_armv7l.whl#sha256=28a9bbed8fd84f6ebdf4efb48ef9e2435715169ef7a558ad7f11a33232e83815 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,810   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp35-cp35m-linux_armv6l.whl#sha256=28a9bbed8fd84f6ebdf4efb48ef9e2435715169ef7a558ad7f11a33232e83815 (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,810   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp34-cp34m-linux_armv7l.whl#sha256=6d813f8dee5bde52fe344b851079bfaab34030f253869d7098ee33929566e36a (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,811   Skipping link: No binaries permitted for mdanalysis: https://archive1.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp34-cp34m-linux_armv6l.whl#sha256=6d813f8dee5bde52fe344b851079bfaab34030f253869d7098ee33929566e36a (from https://www.piwheels.org/simple/mdanalysis/)
2025-10-18T00:55:22,811 Skipping link: not a file: https://www.piwheels.org/simple/mdanalysis/
2025-10-18T00:55:22,812 Skipping link: not a file: https://pypi.org/simple/mdanalysis/
2025-10-18T00:55:22,836 Given no hashes to check 1 links for project 'mdanalysis': discarding no candidates
2025-10-18T00:55:22,853 Collecting mdanalysis==2.10.0
2025-10-18T00:55:22,856   Created temporary directory: /tmp/pip-unpack-wlji5mef
2025-10-18T00:55:22,985   Downloading mdanalysis-2.10.0.tar.gz (5.3 MB)
2025-10-18T00:55:25,694   Added mdanalysis==2.10.0 from https://files.pythonhosted.org/packages/bc/eb/1ef9da97c43184f6c1c2b0a224cab574f82dcb39d930808f971feb4f2a3f/mdanalysis-2.10.0.tar.gz to build tracker '/tmp/pip-build-tracker-g3phjpg0'
2025-10-18T00:55:25,704   Created temporary directory: /tmp/pip-build-env-eokb227q
2025-10-18T00:55:25,708   Installing build dependencies: started
2025-10-18T00:55:25,709   Running command pip subprocess to install build dependencies
2025-10-18T00:55:26,860   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-10-18T00:55:27,464   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-18T00:55:27,487   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-18T00:55:29,655   Collecting Cython>=0.28
2025-10-18T00:55:29,679     Using cached cython-3.1.4-py3-none-any.whl (1.2 MB)
2025-10-18T00:55:29,884   Collecting packaging
2025-10-18T00:55:29,901     Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB)
2025-10-18T00:55:30,824     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2025-10-18T00:55:30,832     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2025-10-18T00:55:30,839     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2025-10-18T00:55:30,846     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2025-10-18T00:55:30,853     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2025-10-18T00:55:31,462   Collecting numpy>=2.0.0
2025-10-18T00:55:32,060     Using cached https://www.piwheels.org/simple/numpy/numpy-2.3.4-cp311-cp311-linux_armv7l.whl (6.1 MB)
2025-10-18T00:55:33,763   Collecting setuptools>=40.9.0
2025-10-18T00:55:33,851     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-10-18T00:55:34,114   Collecting wheel
2025-10-18T00:55:34,131     Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB)
2025-10-18T00:55:37,351   Installing collected packages: wheel, setuptools, packaging, numpy, Cython
2025-10-18T00:55:37,596     Creating /tmp/pip-build-env-eokb227q/overlay/local/bin
2025-10-18T00:55:37,598     changing mode of /tmp/pip-build-env-eokb227q/overlay/local/bin/wheel to 755
2025-10-18T00:55:53,687     changing mode of /tmp/pip-build-env-eokb227q/overlay/local/bin/f2py to 755
2025-10-18T00:55:53,689     changing mode of /tmp/pip-build-env-eokb227q/overlay/local/bin/numpy-config to 755
2025-10-18T00:55:56,714     changing mode of /tmp/pip-build-env-eokb227q/overlay/local/bin/cygdb to 755
2025-10-18T00:55:56,716     changing mode of /tmp/pip-build-env-eokb227q/overlay/local/bin/cython to 755
2025-10-18T00:55:56,718     changing mode of /tmp/pip-build-env-eokb227q/overlay/local/bin/cythonize to 755
2025-10-18T00:55:56,761   Successfully installed Cython-3.1.4 numpy-2.3.4 packaging-25.0 setuptools-80.9.0 wheel-0.45.1
2025-10-18T00:55:57,205   Installing build dependencies: finished with status 'done'
2025-10-18T00:55:57,212   Getting requirements to build wheel: started
2025-10-18T00:55:57,213   Running command Getting requirements to build wheel
2025-10-18T00:56:18,209   performance hint: MDAnalysis/lib/c_distances.pyx:273:0: Exception check on '_minimum_image_orthogonal' will always require the GIL to be acquired.
2025-10-18T00:56:18,209   Possible solutions:
2025-10-18T00:56:18,210   	1. Declare '_minimum_image_orthogonal' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2025-10-18T00:56:18,211   	2. Use an 'int' return type on '_minimum_image_orthogonal' to allow an error code to be returned.
2025-10-18T00:56:18,211   performance hint: MDAnalysis/lib/c_distances.pyx:300:0: Exception check on '_minimum_image_triclinic' will always require the GIL to be acquired.
2025-10-18T00:56:18,212   Possible solutions:
2025-10-18T00:56:18,212   	1. Declare '_minimum_image_triclinic' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2025-10-18T00:56:18,213   	2. Use an 'int' return type on '_minimum_image_triclinic' to allow an error code to be returned.
2025-10-18T00:56:21,263   performance hint: MDAnalysis/lib/c_distances.pyx:390:37: Exception check after calling '__pyx_fuse_0_minimum_image_orthogonal' will always require the GIL to be acquired.
2025-10-18T00:56:21,263   Possible solutions:
2025-10-18T00:56:21,264   	1. Declare '__pyx_fuse_0_minimum_image_orthogonal' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2025-10-18T00:56:21,264   	2. Use an 'int' return type on '__pyx_fuse_0_minimum_image_orthogonal' to allow an error code to be returned.
2025-10-18T00:56:21,272   performance hint: MDAnalysis/lib/c_distances.pyx:390:37: Exception check after calling '__pyx_fuse_1_minimum_image_orthogonal' will always require the GIL to be acquired.
2025-10-18T00:56:21,272   Possible solutions:
2025-10-18T00:56:21,273   	1. Declare '__pyx_fuse_1_minimum_image_orthogonal' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2025-10-18T00:56:21,274   	2. Use an 'int' return type on '__pyx_fuse_1_minimum_image_orthogonal' to allow an error code to be returned.
2025-10-18T00:56:21,303   performance hint: MDAnalysis/lib/c_distances.pyx:414:36: Exception check after calling '__pyx_fuse_0_minimum_image_triclinic' will always require the GIL to be acquired.
2025-10-18T00:56:21,303   Possible solutions:
2025-10-18T00:56:21,304   	1. Declare '__pyx_fuse_0_minimum_image_triclinic' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2025-10-18T00:56:21,304   	2. Use an 'int' return type on '__pyx_fuse_0_minimum_image_triclinic' to allow an error code to be returned.
2025-10-18T00:56:21,311   performance hint: MDAnalysis/lib/c_distances.pyx:414:36: Exception check after calling '__pyx_fuse_1_minimum_image_triclinic' will always require the GIL to be acquired.
2025-10-18T00:56:21,312   Possible solutions:
2025-10-18T00:56:21,313   	1. Declare '__pyx_fuse_1_minimum_image_triclinic' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2025-10-18T00:56:21,313   	2. Use an 'int' return type on '__pyx_fuse_1_minimum_image_triclinic' to allow an error code to be returned.
2025-10-18T00:56:23,250   Attempting to autodetect OpenMP support... Compiler supports OpenMP
2025-10-18T00:56:23,250   Will attempt to use Cython.
2025-10-18T00:56:23,251   Compiling MDAnalysis/lib/c_distances.pyx because it depends on /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2025-10-18T00:56:23,251   Compiling MDAnalysis/lib/c_distances_openmp.pyx because it depends on /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2025-10-18T00:56:23,252   Compiling MDAnalysis/analysis/encore/cutils.pyx because it depends on /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2025-10-18T00:56:23,252   Compiling MDAnalysis/analysis/encore/clustering/affinityprop.pyx because it depends on /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2025-10-18T00:56:23,253   Compiling MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx because it depends on /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2025-10-18T00:56:23,253   Compiling MDAnalysis/lib/_cutil.pyx because it depends on /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2025-10-18T00:56:23,254   Compiling MDAnalysis/lib/_augment.pyx because it depends on /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2025-10-18T00:56:23,254   [1/7] Cythonizing MDAnalysis/lib/_augment.pyx
2025-10-18T00:56:23,255   [2/7] Cythonizing MDAnalysis/lib/_cutil.pyx
2025-10-18T00:56:23,255   [3/7] Cythonizing MDAnalysis/analysis/encore/clustering/affinityprop.pyx
2025-10-18T00:56:23,256   [4/7] Cythonizing MDAnalysis/analysis/encore/cutils.pyx
2025-10-18T00:56:23,256   [5/7] Cythonizing MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx
2025-10-18T00:56:23,257   [6/7] Cythonizing MDAnalysis/lib/c_distances.pyx
2025-10-18T00:56:23,257   [7/7] Cythonizing MDAnalysis/lib/c_distances_openmp.pyx
2025-10-18T00:56:23,291   /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite'
2025-10-18T00:56:23,292     warnings.warn(msg)
2025-10-18T00:56:23,292   /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
2025-10-18T00:56:23,293     warnings.warn(msg)
2025-10-18T00:56:23,392   /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2025-10-18T00:56:23,392   !!

2025-10-18T00:56:23,394           ********************************************************************************
2025-10-18T00:56:23,394           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2025-10-18T00:56:23,395           By 2026-Feb-18, you need to update your project and remove deprecated calls
2025-10-18T00:56:23,396           or your builds will no longer be supported.

2025-10-18T00:56:23,397           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-10-18T00:56:23,397           ********************************************************************************

2025-10-18T00:56:23,398   !!
2025-10-18T00:56:23,398     corresp(dist, value, root_dir)
2025-10-18T00:56:23,485   /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-10-18T00:56:23,486   !!

2025-10-18T00:56:23,487           ********************************************************************************
2025-10-18T00:56:23,487           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-10-18T00:56:23,488           License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+)

2025-10-18T00:56:23,489           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-10-18T00:56:23,489           ********************************************************************************

2025-10-18T00:56:23,491   !!
2025-10-18T00:56:23,491     dist._finalize_license_expression()
2025-10-18T00:56:23,492   /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-10-18T00:56:23,492   !!

2025-10-18T00:56:23,493           ********************************************************************************
2025-10-18T00:56:23,494           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-10-18T00:56:23,494           License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+)

2025-10-18T00:56:23,495           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-10-18T00:56:23,496           ********************************************************************************

2025-10-18T00:56:23,497   !!
2025-10-18T00:56:23,498     self._finalize_license_expression()
2025-10-18T00:56:23,499   running egg_info
2025-10-18T00:56:23,507   writing MDAnalysis.egg-info/PKG-INFO
2025-10-18T00:56:23,523   writing dependency_links to MDAnalysis.egg-info/dependency_links.txt
2025-10-18T00:56:23,531   writing requirements to MDAnalysis.egg-info/requires.txt
2025-10-18T00:56:23,532   writing top-level names to MDAnalysis.egg-info/top_level.txt
2025-10-18T00:56:23,627   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,628   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,628   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,629   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,630   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,630   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,631   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,631   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,632   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,632   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,632   dependency /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,633   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,633   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,634   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,634   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,635   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,635   dependency /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,636   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,636   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,637   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,637   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,638   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,638   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,639   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,639   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,640   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,640   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,641   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,641   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,642   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,642   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,643   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,643   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,644   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,645   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,646   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,647   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,648   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,650   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,652   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,655   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,657   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,662   dependency /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/analysis/encore/clustering/include/ap.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,665   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,669   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,670   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,671   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,672   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,672   dependency /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,673   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,674   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,675   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,676   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,676   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,677   dependency /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,678   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,679   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,680   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,682   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,686   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,687   dependency /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,687   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,688   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,688   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,689   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,689   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:23,694   reading manifest file 'MDAnalysis.egg-info/SOURCES.txt'
2025-10-18T00:56:23,728   reading manifest template 'MANIFEST.in'
2025-10-18T00:56:23,860   warning: no previously-included files matching 'doc/html/html' found anywhere in distribution
2025-10-18T00:56:23,863   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2025-10-18T00:56:23,865   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2025-10-18T00:56:23,868   warning: no previously-included files matching '*.pyd' found anywhere in distribution
2025-10-18T00:56:23,871   warning: no previously-included files matching '*~' found anywhere in distribution
2025-10-18T00:56:23,873   warning: no previously-included files matching '.git' found anywhere in distribution
2025-10-18T00:56:23,874   adding license file 'LICENSE'
2025-10-18T00:56:23,874   adding license file 'AUTHORS'
2025-10-18T00:56:23,897   writing manifest file 'MDAnalysis.egg-info/SOURCES.txt'
2025-10-18T00:56:25,050   Getting requirements to build wheel: finished with status 'done'
2025-10-18T00:56:25,053   Created temporary directory: /tmp/pip-modern-metadata-h8z0qqt_
2025-10-18T00:56:25,056   Preparing metadata (pyproject.toml): started
2025-10-18T00:56:25,057   Running command Preparing metadata (pyproject.toml)
2025-10-18T00:56:27,424   Attempting to autodetect OpenMP support... Compiler supports OpenMP
2025-10-18T00:56:27,424   Will attempt to use Cython.
2025-10-18T00:56:27,439   /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite'
2025-10-18T00:56:27,440     warnings.warn(msg)
2025-10-18T00:56:27,441   /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
2025-10-18T00:56:27,441     warnings.warn(msg)
2025-10-18T00:56:27,516   /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2025-10-18T00:56:27,517   !!

2025-10-18T00:56:27,518           ********************************************************************************
2025-10-18T00:56:27,518           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2025-10-18T00:56:27,520           By 2026-Feb-18, you need to update your project and remove deprecated calls
2025-10-18T00:56:27,520           or your builds will no longer be supported.

2025-10-18T00:56:27,521           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-10-18T00:56:27,521           ********************************************************************************

2025-10-18T00:56:27,522   !!
2025-10-18T00:56:27,523     corresp(dist, value, root_dir)
2025-10-18T00:56:27,605   /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-10-18T00:56:27,605   !!

2025-10-18T00:56:27,606           ********************************************************************************
2025-10-18T00:56:27,607           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-10-18T00:56:27,608           License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+)

2025-10-18T00:56:27,609           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-10-18T00:56:27,609           ********************************************************************************

2025-10-18T00:56:27,610   !!
2025-10-18T00:56:27,611     dist._finalize_license_expression()
2025-10-18T00:56:27,612   /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-10-18T00:56:27,613   !!

2025-10-18T00:56:27,614           ********************************************************************************
2025-10-18T00:56:27,614           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-10-18T00:56:27,615           License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+)

2025-10-18T00:56:27,616           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-10-18T00:56:27,617           ********************************************************************************

2025-10-18T00:56:27,618   !!
2025-10-18T00:56:27,618     self._finalize_license_expression()
2025-10-18T00:56:27,622   running dist_info
2025-10-18T00:56:27,637   creating /tmp/pip-modern-metadata-h8z0qqt_/MDAnalysis.egg-info
2025-10-18T00:56:27,638   writing /tmp/pip-modern-metadata-h8z0qqt_/MDAnalysis.egg-info/PKG-INFO
2025-10-18T00:56:27,659   writing dependency_links to /tmp/pip-modern-metadata-h8z0qqt_/MDAnalysis.egg-info/dependency_links.txt
2025-10-18T00:56:27,666   writing requirements to /tmp/pip-modern-metadata-h8z0qqt_/MDAnalysis.egg-info/requires.txt
2025-10-18T00:56:27,667   writing top-level names to /tmp/pip-modern-metadata-h8z0qqt_/MDAnalysis.egg-info/top_level.txt
2025-10-18T00:56:27,669   writing manifest file '/tmp/pip-modern-metadata-h8z0qqt_/MDAnalysis.egg-info/SOURCES.txt'
2025-10-18T00:56:27,743   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,743   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,744   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,744   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,745   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,746   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,746   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,747   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,747   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,748   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,748   dependency /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,748   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,749   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,749   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,750   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,750   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,751   dependency /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,751   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,752   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,752   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,753   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,754   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,754   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,755   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,755   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,756   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,756   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,757   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,757   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,757   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,758   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,758   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,759   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,759   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,760   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,760   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,761   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,761   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,762   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,763   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,763   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,764   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,764   dependency /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/analysis/encore/clustering/include/ap.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,765   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,765   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,766   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,766   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,767   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,767   dependency /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,768   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,768   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,769   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,769   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,770   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,770   dependency /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,771   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,771   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,772   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,772   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,773   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,774   dependency /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,774   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,775   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,775   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,775   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,776   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:27,776   reading manifest file '/tmp/pip-modern-metadata-h8z0qqt_/MDAnalysis.egg-info/SOURCES.txt'
2025-10-18T00:56:27,777   reading manifest template 'MANIFEST.in'
2025-10-18T00:56:27,909   warning: no previously-included files matching 'doc/html/html' found anywhere in distribution
2025-10-18T00:56:27,911   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2025-10-18T00:56:27,913   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2025-10-18T00:56:27,915   warning: no previously-included files matching '*.pyd' found anywhere in distribution
2025-10-18T00:56:27,916   warning: no previously-included files matching '*~' found anywhere in distribution
2025-10-18T00:56:27,918   warning: no previously-included files matching '.git' found anywhere in distribution
2025-10-18T00:56:27,919   adding license file 'LICENSE'
2025-10-18T00:56:27,919   adding license file 'AUTHORS'
2025-10-18T00:56:27,936   writing manifest file '/tmp/pip-modern-metadata-h8z0qqt_/MDAnalysis.egg-info/SOURCES.txt'
2025-10-18T00:56:27,938   creating '/tmp/pip-modern-metadata-h8z0qqt_/mdanalysis-2.10.0.dist-info'
2025-10-18T00:56:28,164   Preparing metadata (pyproject.toml): finished with status 'done'
2025-10-18T00:56:28,187   Source in /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6 has version 2.10.0, which satisfies requirement mdanalysis==2.10.0 from https://files.pythonhosted.org/packages/bc/eb/1ef9da97c43184f6c1c2b0a224cab574f82dcb39d930808f971feb4f2a3f/mdanalysis-2.10.0.tar.gz
2025-10-18T00:56:28,188   Removed mdanalysis==2.10.0 from https://files.pythonhosted.org/packages/bc/eb/1ef9da97c43184f6c1c2b0a224cab574f82dcb39d930808f971feb4f2a3f/mdanalysis-2.10.0.tar.gz from build tracker '/tmp/pip-build-tracker-g3phjpg0'
2025-10-18T00:56:28,228 Created temporary directory: /tmp/pip-unpack-mkz6_36r
2025-10-18T00:56:28,228 Building wheels for collected packages: mdanalysis
2025-10-18T00:56:28,233   Created temporary directory: /tmp/pip-wheel-yo597q5_
2025-10-18T00:56:28,234   Destination directory: /tmp/pip-wheel-yo597q5_
2025-10-18T00:56:28,236   Building wheel for mdanalysis (pyproject.toml): started
2025-10-18T00:56:28,237   Running command Building wheel for mdanalysis (pyproject.toml)
2025-10-18T00:56:30,508   Attempting to autodetect OpenMP support... Compiler supports OpenMP
2025-10-18T00:56:30,509   Will attempt to use Cython.
2025-10-18T00:56:30,523   /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite'
2025-10-18T00:56:30,523     warnings.warn(msg)
2025-10-18T00:56:30,524   /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
2025-10-18T00:56:30,524     warnings.warn(msg)
2025-10-18T00:56:30,600   /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2025-10-18T00:56:30,600   !!

2025-10-18T00:56:30,601           ********************************************************************************
2025-10-18T00:56:30,602           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2025-10-18T00:56:30,603           By 2026-Feb-18, you need to update your project and remove deprecated calls
2025-10-18T00:56:30,603           or your builds will no longer be supported.

2025-10-18T00:56:30,604           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-10-18T00:56:30,605           ********************************************************************************

2025-10-18T00:56:30,606   !!
2025-10-18T00:56:30,606     corresp(dist, value, root_dir)
2025-10-18T00:56:30,681   /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-10-18T00:56:30,682   !!

2025-10-18T00:56:30,683           ********************************************************************************
2025-10-18T00:56:30,684           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-10-18T00:56:30,685           License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+)

2025-10-18T00:56:30,686           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-10-18T00:56:30,686           ********************************************************************************

2025-10-18T00:56:30,687   !!
2025-10-18T00:56:30,688     dist._finalize_license_expression()
2025-10-18T00:56:30,688   /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-10-18T00:56:30,689   !!

2025-10-18T00:56:30,690           ********************************************************************************
2025-10-18T00:56:30,691           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-10-18T00:56:30,692           License :: OSI Approved :: GNU Lesser General Public License v3 or later (LGPLv3+)

2025-10-18T00:56:30,693           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-10-18T00:56:30,694           ********************************************************************************

2025-10-18T00:56:30,695   !!
2025-10-18T00:56:30,695     self._finalize_license_expression()
2025-10-18T00:56:30,696   running bdist_wheel
2025-10-18T00:56:30,718   running build
2025-10-18T00:56:30,719   running build_py
2025-10-18T00:56:30,727   creating build/lib.linux-armv7l-cpython-311/MDAnalysis
2025-10-18T00:56:30,730   copying MDAnalysis/exceptions.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis
2025-10-18T00:56:30,732   copying MDAnalysis/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis
2025-10-18T00:56:30,736   copying MDAnalysis/authors.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis
2025-10-18T00:56:30,740   copying MDAnalysis/version.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis
2025-10-18T00:56:30,743   copying MDAnalysis/due.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis
2025-10-18T00:56:30,745   copying MDAnalysis/units.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis
2025-10-18T00:56:30,751   creating build/lib.linux-armv7l-cpython-311/doc/sphinx/source
2025-10-18T00:56:30,754   copying doc/sphinx/source/conf.py -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source
2025-10-18T00:56:30,775   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2025-10-18T00:56:30,777   copying MDAnalysis/core/universe.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2025-10-18T00:56:30,788   copying MDAnalysis/core/topologyattrs.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2025-10-18T00:56:30,796   copying MDAnalysis/core/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2025-10-18T00:56:30,798   copying MDAnalysis/core/topology.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2025-10-18T00:56:30,802   copying MDAnalysis/core/accessors.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2025-10-18T00:56:30,805   copying MDAnalysis/core/_get_readers.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2025-10-18T00:56:30,809   copying MDAnalysis/core/groups.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2025-10-18T00:56:30,820   copying MDAnalysis/core/selection.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2025-10-18T00:56:30,825   copying MDAnalysis/core/topologyobjects.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/core
2025-10-18T00:56:30,830   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,831   copying MDAnalysis/analysis/rdf.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,836   copying MDAnalysis/analysis/psa.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,838   copying MDAnalysis/analysis/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,840   copying MDAnalysis/analysis/dihedrals.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,845   copying MDAnalysis/analysis/density.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,850   copying MDAnalysis/analysis/diffusionmap.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,854   copying MDAnalysis/analysis/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,858   copying MDAnalysis/analysis/pca.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,863   copying MDAnalysis/analysis/bat.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,867   copying MDAnalysis/analysis/backends.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,872   copying MDAnalysis/analysis/rms.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,879   copying MDAnalysis/analysis/polymer.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,884   copying MDAnalysis/analysis/results.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,889   copying MDAnalysis/analysis/waterdynamics.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,891   copying MDAnalysis/analysis/nuclinfo.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,896   copying MDAnalysis/analysis/lineardensity.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,899   copying MDAnalysis/analysis/dielectric.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,902   copying MDAnalysis/analysis/distances.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,905   copying MDAnalysis/analysis/align.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,909   copying MDAnalysis/analysis/gnm.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,912   copying MDAnalysis/analysis/contacts.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,915   copying MDAnalysis/analysis/msd.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,918   copying MDAnalysis/analysis/leaflet.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,921   copying MDAnalysis/analysis/helix_analysis.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,925   copying MDAnalysis/analysis/atomicdistances.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,927   copying MDAnalysis/analysis/nucleicacids.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis
2025-10-18T00:56:30,931   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization
2025-10-18T00:56:30,932   copying MDAnalysis/visualization/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization
2025-10-18T00:56:30,935   copying MDAnalysis/visualization/streamlines.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization
2025-10-18T00:56:30,938   copying MDAnalysis/visualization/streamlines_3D.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization
2025-10-18T00:56:30,942   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2025-10-18T00:56:30,943   copying MDAnalysis/transformations/positionaveraging.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2025-10-18T00:56:30,946   copying MDAnalysis/transformations/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2025-10-18T00:56:30,949   copying MDAnalysis/transformations/wrap.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2025-10-18T00:56:30,952   copying MDAnalysis/transformations/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2025-10-18T00:56:30,954   copying MDAnalysis/transformations/rotate.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2025-10-18T00:56:30,957   copying MDAnalysis/transformations/boxdimensions.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2025-10-18T00:56:30,960   copying MDAnalysis/transformations/nojump.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2025-10-18T00:56:30,963   copying MDAnalysis/transformations/fit.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2025-10-18T00:56:30,966   copying MDAnalysis/transformations/translate.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations
2025-10-18T00:56:30,970   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:30,971   copying MDAnalysis/coordinates/FHIAIMS.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:30,974   copying MDAnalysis/coordinates/memory.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:30,977   copying MDAnalysis/coordinates/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:30,981   copying MDAnalysis/coordinates/IMD.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:30,984   copying MDAnalysis/coordinates/TRR.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:30,987   copying MDAnalysis/coordinates/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:30,991   copying MDAnalysis/coordinates/TPR.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:30,994   copying MDAnalysis/coordinates/GSD.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:30,997   copying MDAnalysis/coordinates/ParmEd.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:30,999   copying MDAnalysis/coordinates/NAMDBIN.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,002   copying MDAnalysis/coordinates/DMS.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,005   copying MDAnalysis/coordinates/TRZ.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,008   copying MDAnalysis/coordinates/PQR.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,011   copying MDAnalysis/coordinates/LAMMPS.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,014   copying MDAnalysis/coordinates/CRD.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,017   copying MDAnalysis/coordinates/chain.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,020   copying MDAnalysis/coordinates/MOL2.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,023   copying MDAnalysis/coordinates/core.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,026   copying MDAnalysis/coordinates/DCD.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,029   copying MDAnalysis/coordinates/GMS.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,032   copying MDAnalysis/coordinates/TRC.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,035   copying MDAnalysis/coordinates/INPCRD.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,037   copying MDAnalysis/coordinates/XDR.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,040   copying MDAnalysis/coordinates/PDB.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,044   copying MDAnalysis/coordinates/PDBQT.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,047   copying MDAnalysis/coordinates/TXYZ.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,050   copying MDAnalysis/coordinates/DLPoly.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,053   copying MDAnalysis/coordinates/XYZ.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,056   copying MDAnalysis/coordinates/null.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,058   copying MDAnalysis/coordinates/MMTF.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,061   copying MDAnalysis/coordinates/TRJ.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,064   copying MDAnalysis/coordinates/XTC.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,067   copying MDAnalysis/coordinates/H5MD.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,070   copying MDAnalysis/coordinates/TNG.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,073   copying MDAnalysis/coordinates/chemfiles.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,076   copying MDAnalysis/coordinates/GRO.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:31,080   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2025-10-18T00:56:31,081   copying MDAnalysis/converters/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2025-10-18T00:56:31,084   copying MDAnalysis/converters/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2025-10-18T00:56:31,086   copying MDAnalysis/converters/OpenMM.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2025-10-18T00:56:31,089   copying MDAnalysis/converters/ParmEd.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2025-10-18T00:56:31,092   copying MDAnalysis/converters/RDKit.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2025-10-18T00:56:31,095   copying MDAnalysis/converters/RDKitParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2025-10-18T00:56:31,098   copying MDAnalysis/converters/OpenMMParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2025-10-18T00:56:31,101   copying MDAnalysis/converters/ParmEdParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2025-10-18T00:56:31,104   copying MDAnalysis/converters/RDKitInferring.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/converters
2025-10-18T00:56:31,108   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2025-10-18T00:56:31,110   copying MDAnalysis/selections/charmm.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2025-10-18T00:56:31,112   copying MDAnalysis/selections/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2025-10-18T00:56:31,115   copying MDAnalysis/selections/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2025-10-18T00:56:31,117   copying MDAnalysis/selections/jmol.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2025-10-18T00:56:31,120   copying MDAnalysis/selections/gromacs.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2025-10-18T00:56:31,122   copying MDAnalysis/selections/pymol.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2025-10-18T00:56:31,125   copying MDAnalysis/selections/vmd.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/selections
2025-10-18T00:56:31,127   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/tests
2025-10-18T00:56:31,129   copying MDAnalysis/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/tests
2025-10-18T00:56:31,131   copying MDAnalysis/tests/datafiles.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/tests
2025-10-18T00:56:31,134   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:31,135   copying MDAnalysis/lib/util.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:31,140   copying MDAnalysis/lib/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:31,142   copying MDAnalysis/lib/NeighborSearch.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:31,145   copying MDAnalysis/lib/transformations.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:31,148   copying MDAnalysis/lib/_distopia.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:31,151   copying MDAnalysis/lib/picklable_file_io.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:31,154   copying MDAnalysis/lib/distances.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:31,158   copying MDAnalysis/lib/correlations.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:31,160   copying MDAnalysis/lib/pkdtree.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:31,163   copying MDAnalysis/lib/mdamath.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:31,166   copying MDAnalysis/lib/log.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:31,169   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary
2025-10-18T00:56:31,170   copying MDAnalysis/auxiliary/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary
2025-10-18T00:56:31,173   copying MDAnalysis/auxiliary/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary
2025-10-18T00:56:31,176   copying MDAnalysis/auxiliary/core.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary
2025-10-18T00:56:31,178   copying MDAnalysis/auxiliary/XVG.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary
2025-10-18T00:56:31,180   copying MDAnalysis/auxiliary/EDR.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary
2025-10-18T00:56:31,184   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/guesser
2025-10-18T00:56:31,185   copying MDAnalysis/guesser/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/guesser
2025-10-18T00:56:31,187   copying MDAnalysis/guesser/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/guesser
2025-10-18T00:56:31,190   copying MDAnalysis/guesser/tables.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/guesser
2025-10-18T00:56:31,192   copying MDAnalysis/guesser/default_guesser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/guesser
2025-10-18T00:56:31,198   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,199   copying MDAnalysis/topology/PDBParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,202   copying MDAnalysis/topology/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,205   copying MDAnalysis/topology/PQRParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,207   copying MDAnalysis/topology/base.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,210   copying MDAnalysis/topology/DMSParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,212   copying MDAnalysis/topology/GROParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,214   copying MDAnalysis/topology/DLPolyParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,216   copying MDAnalysis/topology/PSFParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,219   copying MDAnalysis/topology/ParmEdParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,221   copying MDAnalysis/topology/core.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,223   copying MDAnalysis/topology/guessers.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,226   copying MDAnalysis/topology/MinimalParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,228   copying MDAnalysis/topology/TPRParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,230   copying MDAnalysis/topology/tables.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,233   copying MDAnalysis/topology/CRDParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,235   copying MDAnalysis/topology/LAMMPSParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,238   copying MDAnalysis/topology/ITPParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,241   copying MDAnalysis/topology/GMSParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,243   copying MDAnalysis/topology/ExtendedPDBParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,244   copying MDAnalysis/topology/PDBQTParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,247   copying MDAnalysis/topology/GSDParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,249   copying MDAnalysis/topology/FHIAIMSParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,252   copying MDAnalysis/topology/MMTFParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,254   copying MDAnalysis/topology/XYZParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,256   copying MDAnalysis/topology/TXYZParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,259   copying MDAnalysis/topology/MOL2Parser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,262   copying MDAnalysis/topology/HoomdXMLParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,264   copying MDAnalysis/topology/TOPParser.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology
2025-10-18T00:56:31,267   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hbonds
2025-10-18T00:56:31,268   copying MDAnalysis/analysis/hbonds/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hbonds
2025-10-18T00:56:31,271   copying MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hbonds
2025-10-18T00:56:31,273   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2025-10-18T00:56:31,274   copying MDAnalysis/analysis/encore/similarity.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2025-10-18T00:56:31,278   copying MDAnalysis/analysis/encore/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2025-10-18T00:56:31,280   copying MDAnalysis/analysis/encore/utils.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2025-10-18T00:56:31,282   copying MDAnalysis/analysis/encore/bootstrap.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2025-10-18T00:56:31,285   copying MDAnalysis/analysis/encore/covariance.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2025-10-18T00:56:31,287   copying MDAnalysis/analysis/encore/confdistmatrix.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2025-10-18T00:56:31,290   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds
2025-10-18T00:56:31,291   copying MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds
2025-10-18T00:56:31,293   copying MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds
2025-10-18T00:56:31,296   copying MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds
2025-10-18T00:56:31,299   copying MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds
2025-10-18T00:56:31,304   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data
2025-10-18T00:56:31,305   copying MDAnalysis/analysis/data/filenames.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data
2025-10-18T00:56:31,307   copying MDAnalysis/analysis/data/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data
2025-10-18T00:56:31,309   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hole2
2025-10-18T00:56:31,310   copying MDAnalysis/analysis/hole2/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hole2
2025-10-18T00:56:31,313   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/dssp
2025-10-18T00:56:31,314   copying MDAnalysis/analysis/dssp/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/dssp
2025-10-18T00:56:31,316   copying MDAnalysis/analysis/dssp/pydssp_numpy.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/dssp
2025-10-18T00:56:31,319   copying MDAnalysis/analysis/dssp/dssp.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/dssp
2025-10-18T00:56:31,322   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/legacy
2025-10-18T00:56:31,323   copying MDAnalysis/analysis/legacy/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/legacy
2025-10-18T00:56:31,325   copying MDAnalysis/analysis/legacy/x3dna.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/legacy
2025-10-18T00:56:31,329   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2025-10-18T00:56:31,330   copying MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2025-10-18T00:56:31,332   copying MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2025-10-18T00:56:31,335   copying MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2025-10-18T00:56:31,337   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2025-10-18T00:56:31,339   copying MDAnalysis/analysis/encore/clustering/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2025-10-18T00:56:31,341   copying MDAnalysis/analysis/encore/clustering/cluster.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2025-10-18T00:56:31,343   copying MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2025-10-18T00:56:31,346   copying MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2025-10-18T00:56:31,350   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/libmdanalysis
2025-10-18T00:56:31,351   copying MDAnalysis/lib/libmdanalysis/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/libmdanalysis
2025-10-18T00:56:31,354   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2025-10-18T00:56:31,355   copying MDAnalysis/lib/formats/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2025-10-18T00:56:31,358   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/include
2025-10-18T00:56:31,359   copying MDAnalysis/lib/include/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/include
2025-10-18T00:56:31,361   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations
2025-10-18T00:56:31,363   copying MDAnalysis/lib/src/transformations/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations
2025-10-18T00:56:31,365   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2025-10-18T00:56:31,366   copying MDAnalysis/lib/formats/src/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2025-10-18T00:56:31,368   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2025-10-18T00:56:31,369   copying MDAnalysis/lib/formats/include/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2025-10-18T00:56:31,372   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr
2025-10-18T00:56:31,373   copying MDAnalysis/topology/tpr/__init__.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr
2025-10-18T00:56:31,375   copying MDAnalysis/topology/tpr/utils.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr
2025-10-18T00:56:31,378   copying MDAnalysis/topology/tpr/obj.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr
2025-10-18T00:56:31,380   copying MDAnalysis/topology/tpr/setting.py -> build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr
2025-10-18T00:56:31,383   running egg_info
2025-10-18T00:56:31,397   writing MDAnalysis.egg-info/PKG-INFO
2025-10-18T00:56:31,413   writing dependency_links to MDAnalysis.egg-info/dependency_links.txt
2025-10-18T00:56:31,420   writing requirements to MDAnalysis.egg-info/requires.txt
2025-10-18T00:56:31,421   writing top-level names to MDAnalysis.egg-info/top_level.txt
2025-10-18T00:56:31,472   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,473   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,473   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,474   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,474   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,475   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,476   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,476   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,477   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,477   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,478   dependency /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,478   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,479   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,480   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,480   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,481   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,481   dependency /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,482   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,483   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,483   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,484   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,485   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,485   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,486   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,487   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,488   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,488   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,489   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,490   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,490   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,491   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,491   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,492   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,493   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,493   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,494   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,495   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,495   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,496   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,497   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,497   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,498   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,499   dependency /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/analysis/encore/clustering/include/ap.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,499   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,500   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,501   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,501   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,502   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,502   dependency /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,503   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,503   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,504   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,504   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,505   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,506   dependency /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,506   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,507   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,508   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,508   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,509   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,510   dependency /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,510   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,511   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,512   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,512   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,513   dependency /tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2025-10-18T00:56:31,513   reading manifest file 'MDAnalysis.egg-info/SOURCES.txt'
2025-10-18T00:56:31,534   reading manifest template 'MANIFEST.in'
2025-10-18T00:56:31,736   warning: no previously-included files matching 'doc/html/html' found anywhere in distribution
2025-10-18T00:56:31,738   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2025-10-18T00:56:31,741   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2025-10-18T00:56:31,744   warning: no previously-included files matching '*.pyd' found anywhere in distribution
2025-10-18T00:56:31,746   warning: no previously-included files matching '*~' found anywhere in distribution
2025-10-18T00:56:31,749   warning: no previously-included files matching '.git' found anywhere in distribution
2025-10-18T00:56:31,749   adding license file 'LICENSE'
2025-10-18T00:56:31,750   adding license file 'AUTHORS'
2025-10-18T00:56:31,772   writing manifest file 'MDAnalysis.egg-info/SOURCES.txt'
2025-10-18T00:56:31,816   copying doc/README -> build/lib.linux-armv7l-cpython-311/doc
2025-10-18T00:56:31,818   copying MDAnalysis/analysis/data/janin_ref_data.npy -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data
2025-10-18T00:56:31,822   copying MDAnalysis/analysis/data/rama_ref_data.npy -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data
2025-10-18T00:56:31,826   copying doc/sphinx/Makefile -> build/lib.linux-armv7l-cpython-311/doc/sphinx
2025-10-18T00:56:31,829   copying doc/sphinx/source/index.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source
2025-10-18T00:56:31,831   copying doc/sphinx/source/references.bib -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source
2025-10-18T00:56:31,835   creating build/lib.linux-armv7l-cpython-311/doc/sphinx/source/images
2025-10-18T00:56:31,836   copying doc/sphinx/source/images/AnalysisBase_parallel.png -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/images
2025-10-18T00:56:31,843   copying doc/sphinx/source/images/RSMD_plot.png -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/images
2025-10-18T00:56:31,846   copying doc/sphinx/source/images/janin_demo_plot.png -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/images
2025-10-18T00:56:31,850   copying doc/sphinx/source/images/janin_ref_plot.png -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/images
2025-10-18T00:56:31,853   copying doc/sphinx/source/images/msd_demo_plot.png -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/images
2025-10-18T00:56:31,856   copying doc/sphinx/source/images/parallelization_time.png -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/images
2025-10-18T00:56:31,872   copying doc/sphinx/source/images/rama_demo_plot.png -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/images
2025-10-18T00:56:31,875   copying doc/sphinx/source/images/rama_ref_plot.png -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/images
2025-10-18T00:56:31,878   creating build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,879   copying doc/sphinx/source/documentation_pages/analysis_modules.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,882   copying doc/sphinx/source/documentation_pages/auxiliary_modules.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,884   copying doc/sphinx/source/documentation_pages/converters.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,887   copying doc/sphinx/source/documentation_pages/coordinates_modules.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,889   copying doc/sphinx/source/documentation_pages/core_modules.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,891   copying doc/sphinx/source/documentation_pages/exceptions.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,893   copying doc/sphinx/source/documentation_pages/guesser_modules.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,896   copying doc/sphinx/source/documentation_pages/lib_modules.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,898   copying doc/sphinx/source/documentation_pages/overview.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,901   copying doc/sphinx/source/documentation_pages/references.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,904   copying doc/sphinx/source/documentation_pages/selections.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,907   copying doc/sphinx/source/documentation_pages/selections_modules.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,909   copying doc/sphinx/source/documentation_pages/topology.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,912   copying doc/sphinx/source/documentation_pages/topology_modules.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,914   copying doc/sphinx/source/documentation_pages/trajectory_transformations.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,917   copying doc/sphinx/source/documentation_pages/units.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,919   copying doc/sphinx/source/documentation_pages/version.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,922   copying doc/sphinx/source/documentation_pages/visualization_modules.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages
2025-10-18T00:56:31,924   creating build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/core
2025-10-18T00:56:31,925   copying doc/sphinx/source/documentation_pages/core/accessors.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/core
2025-10-18T00:56:31,928   copying doc/sphinx/source/documentation_pages/core/groups.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/core
2025-10-18T00:56:31,930   copying doc/sphinx/source/documentation_pages/core/init.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/core
2025-10-18T00:56:31,933   copying doc/sphinx/source/documentation_pages/core/selection.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/core
2025-10-18T00:56:31,935   copying doc/sphinx/source/documentation_pages/core/topology.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/core
2025-10-18T00:56:31,937   copying doc/sphinx/source/documentation_pages/core/topologyattrs.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/core
2025-10-18T00:56:31,940   copying doc/sphinx/source/documentation_pages/core/topologyobjects.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/core
2025-10-18T00:56:31,942   copying doc/sphinx/source/documentation_pages/core/universe.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/core
2025-10-18T00:56:31,944   creating build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,945   copying doc/sphinx/source/documentation_pages/analysis/align.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,948   copying doc/sphinx/source/documentation_pages/analysis/atomicdistances.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,950   copying doc/sphinx/source/documentation_pages/analysis/backends.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,953   copying doc/sphinx/source/documentation_pages/analysis/base.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,955   copying doc/sphinx/source/documentation_pages/analysis/bat.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,957   copying doc/sphinx/source/documentation_pages/analysis/contacts.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,960   copying doc/sphinx/source/documentation_pages/analysis/data.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,962   copying doc/sphinx/source/documentation_pages/analysis/density.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,964   copying doc/sphinx/source/documentation_pages/analysis/dielectric.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,966   copying doc/sphinx/source/documentation_pages/analysis/diffusionmap.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,969   copying doc/sphinx/source/documentation_pages/analysis/dihedrals.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,971   copying doc/sphinx/source/documentation_pages/analysis/distances.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,973   copying doc/sphinx/source/documentation_pages/analysis/dssp.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,976   copying doc/sphinx/source/documentation_pages/analysis/encore.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,978   copying doc/sphinx/source/documentation_pages/analysis/gnm.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,981   copying doc/sphinx/source/documentation_pages/analysis/hbond_autocorrel.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,984   copying doc/sphinx/source/documentation_pages/analysis/hbond_autocorrel_deprecated.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,986   copying doc/sphinx/source/documentation_pages/analysis/helix_analysis.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,989   copying doc/sphinx/source/documentation_pages/analysis/hole2.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,991   copying doc/sphinx/source/documentation_pages/analysis/hydrogenbonds.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,993   copying doc/sphinx/source/documentation_pages/analysis/leaflet.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,996   copying doc/sphinx/source/documentation_pages/analysis/legacy_modules.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:31,998   copying doc/sphinx/source/documentation_pages/analysis/lineardensity.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:32,000   copying doc/sphinx/source/documentation_pages/analysis/msd.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:32,002   copying doc/sphinx/source/documentation_pages/analysis/nucleicacids.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:32,005   copying doc/sphinx/source/documentation_pages/analysis/nuclinfo.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:32,007   copying doc/sphinx/source/documentation_pages/analysis/parallelization.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:32,010   copying doc/sphinx/source/documentation_pages/analysis/pca.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:32,012   copying doc/sphinx/source/documentation_pages/analysis/polymer.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:32,015   copying doc/sphinx/source/documentation_pages/analysis/psa.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:32,017   copying doc/sphinx/source/documentation_pages/analysis/rdf.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:32,019   copying doc/sphinx/source/documentation_pages/analysis/results.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:32,022   copying doc/sphinx/source/documentation_pages/analysis/rms.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:32,024   copying doc/sphinx/source/documentation_pages/analysis/waterdynamics.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:32,027   copying doc/sphinx/source/documentation_pages/analysis/wbridge_analysis.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis
2025-10-18T00:56:32,029   creating build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/visualization
2025-10-18T00:56:32,030   copying doc/sphinx/source/documentation_pages/visualization/streamlines.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/visualization
2025-10-18T00:56:32,032   copying doc/sphinx/source/documentation_pages/visualization/streamlines_3D.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/visualization
2025-10-18T00:56:32,035   copying doc/sphinx/source/documentation_pages/visualization/test_streamplot_3D.png -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/visualization
2025-10-18T00:56:32,043   copying doc/sphinx/source/documentation_pages/visualization/testing_streamline.png -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/visualization
2025-10-18T00:56:32,053   creating build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/transformations
2025-10-18T00:56:32,054   copying doc/sphinx/source/documentation_pages/transformations/base.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/transformations
2025-10-18T00:56:32,057   copying doc/sphinx/source/documentation_pages/transformations/boxdimensions.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/transformations
2025-10-18T00:56:32,059   copying doc/sphinx/source/documentation_pages/transformations/fit.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/transformations
2025-10-18T00:56:32,061   copying doc/sphinx/source/documentation_pages/transformations/nojump.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/transformations
2025-10-18T00:56:32,063   copying doc/sphinx/source/documentation_pages/transformations/positionaveraging.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/transformations
2025-10-18T00:56:32,066   copying doc/sphinx/source/documentation_pages/transformations/rotate.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/transformations
2025-10-18T00:56:32,068   copying doc/sphinx/source/documentation_pages/transformations/translate.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/transformations
2025-10-18T00:56:32,070   copying doc/sphinx/source/documentation_pages/transformations/wrap.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/transformations
2025-10-18T00:56:32,072   creating build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,074   copying doc/sphinx/source/documentation_pages/coordinates/CRD.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,076   copying doc/sphinx/source/documentation_pages/coordinates/DCD.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,078   copying doc/sphinx/source/documentation_pages/coordinates/DLPoly.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,081   copying doc/sphinx/source/documentation_pages/coordinates/DMS.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,083   copying doc/sphinx/source/documentation_pages/coordinates/FHIAIMS.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,085   copying doc/sphinx/source/documentation_pages/coordinates/GMS.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,087   copying doc/sphinx/source/documentation_pages/coordinates/GRO.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,090   copying doc/sphinx/source/documentation_pages/coordinates/GSD.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,092   copying doc/sphinx/source/documentation_pages/coordinates/H5MD.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,094   copying doc/sphinx/source/documentation_pages/coordinates/IMD.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,097   copying doc/sphinx/source/documentation_pages/coordinates/INPCRD.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,099   copying doc/sphinx/source/documentation_pages/coordinates/LAMMPS.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,101   copying doc/sphinx/source/documentation_pages/coordinates/MMTF.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,104   copying doc/sphinx/source/documentation_pages/coordinates/MOL2.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,106   copying doc/sphinx/source/documentation_pages/coordinates/NAMDBIN.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,108   copying doc/sphinx/source/documentation_pages/coordinates/PDB.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,110   copying doc/sphinx/source/documentation_pages/coordinates/PDBQT.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,113   copying doc/sphinx/source/documentation_pages/coordinates/PQR.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,115   copying doc/sphinx/source/documentation_pages/coordinates/TNG.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,118   copying doc/sphinx/source/documentation_pages/coordinates/TPR.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,120   copying doc/sphinx/source/documentation_pages/coordinates/TRC.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,122   copying doc/sphinx/source/documentation_pages/coordinates/TRJ.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,125   copying doc/sphinx/source/documentation_pages/coordinates/TRR.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,127   copying doc/sphinx/source/documentation_pages/coordinates/TRZ.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,129   copying doc/sphinx/source/documentation_pages/coordinates/TXYZ.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,131   copying doc/sphinx/source/documentation_pages/coordinates/XDR.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,133   copying doc/sphinx/source/documentation_pages/coordinates/XTC.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,136   copying doc/sphinx/source/documentation_pages/coordinates/XYZ.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,138   copying doc/sphinx/source/documentation_pages/coordinates/base.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,140   copying doc/sphinx/source/documentation_pages/coordinates/chain.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,142   copying doc/sphinx/source/documentation_pages/coordinates/chemfiles.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,145   copying doc/sphinx/source/documentation_pages/coordinates/core.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,147   copying doc/sphinx/source/documentation_pages/coordinates/init.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,150   copying doc/sphinx/source/documentation_pages/coordinates/memory.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,152   copying doc/sphinx/source/documentation_pages/coordinates/null.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,154   copying doc/sphinx/source/documentation_pages/coordinates/pickle_readers.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,157   copying doc/sphinx/source/documentation_pages/coordinates/timestep.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T00:56:32,159   creating build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/converters
2025-10-18T00:56:32,160   copying doc/sphinx/source/documentation_pages/converters/OpenMM.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/converters
2025-10-18T00:56:32,162   copying doc/sphinx/source/documentation_pages/converters/ParmEd.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/converters
2025-10-18T00:56:32,165   copying doc/sphinx/source/documentation_pages/converters/RDKit.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/converters
2025-10-18T00:56:32,167   copying doc/sphinx/source/documentation_pages/converters/base.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/converters
2025-10-18T00:56:32,169   creating build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/selections
2025-10-18T00:56:32,170   copying doc/sphinx/source/documentation_pages/selections/base.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/selections
2025-10-18T00:56:32,172   copying doc/sphinx/source/documentation_pages/selections/charmm.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/selections
2025-10-18T00:56:32,175   copying doc/sphinx/source/documentation_pages/selections/gromacs.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/selections
2025-10-18T00:56:32,177   copying doc/sphinx/source/documentation_pages/selections/jmol.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/selections
2025-10-18T00:56:32,179   copying doc/sphinx/source/documentation_pages/selections/pymol.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/selections
2025-10-18T00:56:32,181   copying doc/sphinx/source/documentation_pages/selections/vmd.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/selections
2025-10-18T00:56:32,184   creating build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib
2025-10-18T00:56:32,185   copying doc/sphinx/source/documentation_pages/lib/NeighborSearch.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib
2025-10-18T00:56:32,187   copying doc/sphinx/source/documentation_pages/lib/c_distances.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib
2025-10-18T00:56:32,189   copying doc/sphinx/source/documentation_pages/lib/c_distances_openmp.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib
2025-10-18T00:56:32,192   copying doc/sphinx/source/documentation_pages/lib/correlations.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib
2025-10-18T00:56:32,194   copying doc/sphinx/source/documentation_pages/lib/distances.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib
2025-10-18T00:56:32,196   copying doc/sphinx/source/documentation_pages/lib/log.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib
2025-10-18T00:56:32,199   copying doc/sphinx/source/documentation_pages/lib/mdamath.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib
2025-10-18T00:56:32,201   copying doc/sphinx/source/documentation_pages/lib/nsgrid.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib
2025-10-18T00:56:32,203   copying doc/sphinx/source/documentation_pages/lib/picklable_file_io.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib
2025-10-18T00:56:32,206   copying doc/sphinx/source/documentation_pages/lib/pkdtree.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib
2025-10-18T00:56:32,208   copying doc/sphinx/source/documentation_pages/lib/qcprot.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib
2025-10-18T00:56:32,211   copying doc/sphinx/source/documentation_pages/lib/transformations.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib
2025-10-18T00:56:32,213   copying doc/sphinx/source/documentation_pages/lib/util.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib
2025-10-18T00:56:32,216   creating build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/auxiliary
2025-10-18T00:56:32,217   copying doc/sphinx/source/documentation_pages/auxiliary/EDR.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/auxiliary
2025-10-18T00:56:32,220   copying doc/sphinx/source/documentation_pages/auxiliary/XVG.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/auxiliary
2025-10-18T00:56:32,222   copying doc/sphinx/source/documentation_pages/auxiliary/base.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/auxiliary
2025-10-18T00:56:32,224   copying doc/sphinx/source/documentation_pages/auxiliary/core.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/auxiliary
2025-10-18T00:56:32,226   copying doc/sphinx/source/documentation_pages/auxiliary/init.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/auxiliary
2025-10-18T00:56:32,228   creating build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/guesser_modules
2025-10-18T00:56:32,229   copying doc/sphinx/source/documentation_pages/guesser_modules/base.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/guesser_modules
2025-10-18T00:56:32,232   copying doc/sphinx/source/documentation_pages/guesser_modules/default_guesser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/guesser_modules
2025-10-18T00:56:32,234   copying doc/sphinx/source/documentation_pages/guesser_modules/init.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/guesser_modules
2025-10-18T00:56:32,236   copying doc/sphinx/source/documentation_pages/guesser_modules/tables.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/guesser_modules
2025-10-18T00:56:32,239   creating build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,240   copying doc/sphinx/source/documentation_pages/topology/CRDParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,242   copying doc/sphinx/source/documentation_pages/topology/DLPolyParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,246   copying doc/sphinx/source/documentation_pages/topology/DMSParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,249   copying doc/sphinx/source/documentation_pages/topology/ExtendedPDBParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,251   copying doc/sphinx/source/documentation_pages/topology/FHIAIMSParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,253   copying doc/sphinx/source/documentation_pages/topology/GMSParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,256   copying doc/sphinx/source/documentation_pages/topology/GROParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,258   copying doc/sphinx/source/documentation_pages/topology/GSDParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,260   copying doc/sphinx/source/documentation_pages/topology/HoomdXMLParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,263   copying doc/sphinx/source/documentation_pages/topology/ITPParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,265   copying doc/sphinx/source/documentation_pages/topology/LAMMPSParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,267   copying doc/sphinx/source/documentation_pages/topology/MMTFParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,270   copying doc/sphinx/source/documentation_pages/topology/MOL2Parser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,272   copying doc/sphinx/source/documentation_pages/topology/MinimalParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,274   copying doc/sphinx/source/documentation_pages/topology/PDBParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,276   copying doc/sphinx/source/documentation_pages/topology/PDBQTParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,279   copying doc/sphinx/source/documentation_pages/topology/PQRParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,281   copying doc/sphinx/source/documentation_pages/topology/PSFParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,283   copying doc/sphinx/source/documentation_pages/topology/TOPParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,286   copying doc/sphinx/source/documentation_pages/topology/TPRParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,289   copying doc/sphinx/source/documentation_pages/topology/TXYZParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,292   copying doc/sphinx/source/documentation_pages/topology/XYZParser.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,295   copying doc/sphinx/source/documentation_pages/topology/base.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,298   copying doc/sphinx/source/documentation_pages/topology/core.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,301   copying doc/sphinx/source/documentation_pages/topology/guessers.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,303   copying doc/sphinx/source/documentation_pages/topology/init.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,306   copying doc/sphinx/source/documentation_pages/topology/tables.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,309   copying doc/sphinx/source/documentation_pages/topology/tpr_util.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology
2025-10-18T00:56:32,311   creating build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/encore
2025-10-18T00:56:32,313   copying doc/sphinx/source/documentation_pages/analysis/encore/bootstrap.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/encore
2025-10-18T00:56:32,316   copying doc/sphinx/source/documentation_pages/analysis/encore/clustering.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/encore
2025-10-18T00:56:32,319   copying doc/sphinx/source/documentation_pages/analysis/encore/confdistmatrix.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/encore
2025-10-18T00:56:32,322   copying doc/sphinx/source/documentation_pages/analysis/encore/covariance.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/encore
2025-10-18T00:56:32,324   copying doc/sphinx/source/documentation_pages/analysis/encore/dimensionality_reduction.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/encore
2025-10-18T00:56:32,327   copying doc/sphinx/source/documentation_pages/analysis/encore/similarity.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/encore
2025-10-18T00:56:32,330   copying doc/sphinx/source/documentation_pages/analysis/encore/utils.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/encore
2025-10-18T00:56:32,333   creating build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/legacy
2025-10-18T00:56:32,334   copying doc/sphinx/source/documentation_pages/analysis/legacy/x3dna.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/legacy
2025-10-18T00:56:32,337   creating build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib/formats
2025-10-18T00:56:32,339   copying doc/sphinx/source/documentation_pages/lib/formats/libdcd.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib/formats
2025-10-18T00:56:32,342   copying doc/sphinx/source/documentation_pages/lib/formats/libmdaxdr.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib/formats
2025-10-18T00:56:32,344   copying MDAnalysis/coordinates/timestep.cpp -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:32,377   copying MDAnalysis/coordinates/timestep.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:32,379   copying MDAnalysis/coordinates/timestep.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T00:56:32,383   copying MDAnalysis/lib/_augment.cpp -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:32,404   copying MDAnalysis/lib/_augment.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:32,406   copying MDAnalysis/lib/_cutil.cpp -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:32,429   copying MDAnalysis/lib/_cutil.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:32,431   copying MDAnalysis/lib/_cutil.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:32,433   copying MDAnalysis/lib/c_distances.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:32,458   copying MDAnalysis/lib/c_distances.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:32,461   copying MDAnalysis/lib/c_distances.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:32,463   copying MDAnalysis/lib/c_distances_openmp.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:32,475   copying MDAnalysis/lib/c_distances_openmp.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:32,478   copying MDAnalysis/lib/nsgrid.cpp -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:32,502   copying MDAnalysis/lib/nsgrid.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:32,505   copying MDAnalysis/lib/qcprot.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:32,530   copying MDAnalysis/lib/qcprot.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib
2025-10-18T00:56:32,533   copying MDAnalysis/analysis/encore/cutils.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2025-10-18T00:56:32,545   copying MDAnalysis/analysis/encore/cutils.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2025-10-18T00:56:32,548   copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2025-10-18T00:56:32,558   copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction
2025-10-18T00:56:32,561   copying MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2025-10-18T00:56:32,572   copying MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2025-10-18T00:56:32,575   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src
2025-10-18T00:56:32,576   copying MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src
2025-10-18T00:56:32,578   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/include
2025-10-18T00:56:32,579   copying MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/include
2025-10-18T00:56:32,582   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/src
2025-10-18T00:56:32,583   copying MDAnalysis/analysis/encore/clustering/src/ap.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/src
2025-10-18T00:56:32,586   creating build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/include
2025-10-18T00:56:32,587   copying MDAnalysis/analysis/encore/clustering/include/ap.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/include
2025-10-18T00:56:32,589   copying MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/libmdanalysis
2025-10-18T00:56:32,591   copying MDAnalysis/lib/formats/cython_util.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2025-10-18T00:56:32,618   copying MDAnalysis/lib/formats/cython_util.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2025-10-18T00:56:32,621   copying MDAnalysis/lib/formats/cython_util.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2025-10-18T00:56:32,623   copying MDAnalysis/lib/formats/libdcd.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2025-10-18T00:56:32,659   copying MDAnalysis/lib/formats/libdcd.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2025-10-18T00:56:32,662   copying MDAnalysis/lib/formats/libdcd.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2025-10-18T00:56:32,665   copying MDAnalysis/lib/formats/libmdaxdr.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2025-10-18T00:56:32,706   copying MDAnalysis/lib/formats/libmdaxdr.pxd -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2025-10-18T00:56:32,708   copying MDAnalysis/lib/formats/libmdaxdr.pyx -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2025-10-18T00:56:32,712   copying MDAnalysis/lib/include/calc_distances.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/include
2025-10-18T00:56:32,715   copying MDAnalysis/lib/src/transformations/AUTHOR -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations
2025-10-18T00:56:32,718   copying MDAnalysis/lib/src/transformations/LICENCE -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations
2025-10-18T00:56:32,720   copying MDAnalysis/lib/src/transformations/transformations.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations
2025-10-18T00:56:32,725   copying MDAnalysis/lib/formats/src/trr_seek.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2025-10-18T00:56:32,728   copying MDAnalysis/lib/formats/src/xdrfile.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2025-10-18T00:56:32,732   copying MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2025-10-18T00:56:32,735   copying MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2025-10-18T00:56:32,738   copying MDAnalysis/lib/formats/src/xtc_seek.c -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2025-10-18T00:56:32,741   copying MDAnalysis/lib/formats/include/endianswap.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2025-10-18T00:56:32,743   copying MDAnalysis/lib/formats/include/fastio.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2025-10-18T00:56:32,746   copying MDAnalysis/lib/formats/include/readdcd.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2025-10-18T00:56:32,749   copying MDAnalysis/lib/formats/include/trr_seek.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2025-10-18T00:56:32,752   copying MDAnalysis/lib/formats/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2025-10-18T00:56:32,755   copying MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2025-10-18T00:56:32,757   copying MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2025-10-18T00:56:32,760   copying MDAnalysis/lib/formats/include/xtc_seek.h -> build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include
2025-10-18T00:56:32,785   running build_ext
2025-10-18T00:56:32,788   building 'MDAnalysis.lib.formats.libdcd' extension
2025-10-18T00:56:32,789   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats
2025-10-18T00:56:32,792   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include -I/usr/include/python3.11 -c MDAnalysis/lib/formats/libdcd.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.o -std=c11 -O3 -funroll-loops -fsigned-zeros
2025-10-18T00:56:33,282   In file included from MDAnalysis/lib/formats/libdcd.c:1167:
2025-10-18T00:56:33,283   MDAnalysis/lib/formats/include/readdcd.h: In function ‘read_dcdstep’:
2025-10-18T00:56:33,284   MDAnalysis/lib/formats/include/readdcd.h:562:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2025-10-18T00:56:33,284     562 |       if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT;
2025-10-18T00:56:33,285         |                     ^~
2025-10-18T00:56:33,287   MDAnalysis/lib/formats/include/readdcd.h: In function ‘write_dcdheader’:
2025-10-18T00:56:33,288   MDAnalysis/lib/formats/include/readdcd.h:698:14: warning: unused variable ‘tmbuf’ [-Wunused-variable]
2025-10-18T00:56:33,288     698 |   struct tm *tmbuf;
2025-10-18T00:56:33,289         |              ^~~~~
2025-10-18T00:56:33,290   MDAnalysis/lib/formats/include/readdcd.h:697:10: warning: unused variable ‘cur_time’ [-Wunused-variable]
2025-10-18T00:56:33,290     697 |   time_t cur_time;
2025-10-18T00:56:33,291         |          ^~~~~~~~
2025-10-18T00:56:36,802   In file included from MDAnalysis/lib/formats/include/readdcd.h:25:
2025-10-18T00:56:36,803   MDAnalysis/lib/formats/include/endianswap.h: At top level:
2025-10-18T00:56:36,803   MDAnalysis/lib/formats/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2025-10-18T00:56:36,804      96 | static void swap2_aligned(void *v, long ndata) {
2025-10-18T00:56:36,805         |             ^~~~~~~~~~~~~
2025-10-18T00:56:36,805   MDAnalysis/lib/formats/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2025-10-18T00:56:36,806      32 | static void swap2_unaligned(void *v, long ndata) {
2025-10-18T00:56:36,807         |             ^~~~~~~~~~~~~~~
2025-10-18T00:56:36,807   In file included from MDAnalysis/lib/formats/libdcd.c:1166:
2025-10-18T00:56:36,808   MDAnalysis/lib/formats/include/fastio.h:453:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2025-10-18T00:56:36,809     453 | static int fio_write_str(fio_fd fd, const char *str) {
2025-10-18T00:56:36,809         |            ^~~~~~~~~~~~~
2025-10-18T00:56:36,809   MDAnalysis/lib/formats/include/fastio.h:449:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2025-10-18T00:56:36,810     449 | static int fio_read_int32(fio_fd fd, int *i) {
2025-10-18T00:56:36,810         |            ^~~~~~~~~~~~~~
2025-10-18T00:57:15,627   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.cpython-311-arm-linux-gnueabihf.so
2025-10-18T00:57:15,791   building 'MDAnalysis.lib.c_distances' extension
2025-10-18T00:57:15,792   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include -I/usr/include/python3.11 -c MDAnalysis/lib/c_distances.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.o -std=c11 -O3 -funroll-loops -fsigned-zeros
2025-10-18T00:58:01,410   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.cpython-311-arm-linux-gnueabihf.so
2025-10-18T00:58:01,778   building 'MDAnalysis.lib.c_distances_openmp' extension
2025-10-18T00:58:01,779   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DPARALLEL -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include -I/usr/include/python3.11 -c MDAnalysis/lib/c_distances_openmp.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances_openmp.o -fopenmp -std=c11 -O3 -funroll-loops -fsigned-zeros
2025-10-18T00:58:13,952   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances_openmp.o -L/usr/lib/arm-linux-gnueabihf -lm -lgomp -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances_openmp.cpython-311-arm-linux-gnueabihf.so -fopenmp
2025-10-18T00:58:14,129   building 'MDAnalysis.lib.qcprot' extension
2025-10-18T00:58:14,129   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c MDAnalysis/lib/qcprot.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/qcprot.o -std=c11 -O3 -funroll-loops -fsigned-zeros
2025-10-18T00:58:14,863   MDAnalysis/lib/qcprot.c: In function ‘__pyx_fuse_0__pyx_f_10MDAnalysis_3lib_6qcprot_InnerProduct’:
2025-10-18T00:58:14,881   MDAnalysis/lib/qcprot.c:20577:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-10-18T00:58:14,881   20577 |     for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2025-10-18T00:58:14,882         |                                   ^
2025-10-18T00:58:14,901   MDAnalysis/lib/qcprot.c:20785:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-10-18T00:58:14,901   20785 |     for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2025-10-18T00:58:14,902         |                                   ^
2025-10-18T00:58:14,915   MDAnalysis/lib/qcprot.c: In function ‘__pyx_fuse_1__pyx_f_10MDAnalysis_3lib_6qcprot_InnerProduct’:
2025-10-18T00:58:14,934   MDAnalysis/lib/qcprot.c:21216:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-10-18T00:58:14,934   21216 |     for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2025-10-18T00:58:14,935         |                                   ^
2025-10-18T00:58:14,954   MDAnalysis/lib/qcprot.c:21424:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-10-18T00:58:14,955   21424 |     for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2025-10-18T00:58:14,955         |                                   ^
2025-10-18T00:58:54,295   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/qcprot.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/qcprot.cpython-311-arm-linux-gnueabihf.so
2025-10-18T00:58:54,458   building 'MDAnalysis.lib._transformations' extension
2025-10-18T00:58:54,459   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations
2025-10-18T00:58:54,460   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c MDAnalysis/lib/src/transformations/transformations.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations/transformations.o -std=c11 -O3 -funroll-loops -fsigned-zeros
2025-10-18T00:58:54,949   MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_superimposition_matrix’:
2025-10-18T00:58:54,949   MDAnalysis/lib/src/transformations/transformations.c:1837: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2025-10-18T00:58:54,950    1837 |                 #pragma vector always
2025-10-18T00:58:54,951         |
2025-10-18T00:58:54,954   MDAnalysis/lib/src/transformations/transformations.c:1954: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2025-10-18T00:58:54,954    1954 |                     #pragma vector always
2025-10-18T00:58:54,955         |
2025-10-18T00:58:54,956   MDAnalysis/lib/src/transformations/transformations.c:1978: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2025-10-18T00:58:54,957    1978 |                     #pragma vector always
2025-10-18T00:58:54,957         |
2025-10-18T00:58:55,005   MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_vector_norm’:
2025-10-18T00:58:55,006   MDAnalysis/lib/src/transformations/transformations.c:3414: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2025-10-18T00:58:55,007    3414 |             #pragma vector always
2025-10-18T00:58:55,007         |
2025-10-18T00:58:55,010   MDAnalysis/lib/src/transformations/transformations.c:3495: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2025-10-18T00:58:55,011    3495 |                 #pragma vector always
2025-10-18T00:58:55,012         |
2025-10-18T00:58:55,018   MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_unit_vector’:
2025-10-18T00:58:55,019   MDAnalysis/lib/src/transformations/transformations.c:3597: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2025-10-18T00:58:55,020    3597 |             #pragma vector always
2025-10-18T00:58:55,020         |
2025-10-18T00:58:55,021   MDAnalysis/lib/src/transformations/transformations.c:3602: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2025-10-18T00:58:55,021    3602 |             #pragma vector always
2025-10-18T00:58:55,022         |
2025-10-18T00:58:55,024   MDAnalysis/lib/src/transformations/transformations.c:3666: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2025-10-18T00:58:55,025    3666 |                 #pragma vector always
2025-10-18T00:58:55,026         |
2025-10-18T00:58:55,026   MDAnalysis/lib/src/transformations/transformations.c:3671: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2025-10-18T00:58:55,027    3671 |                 #pragma vector always
2025-10-18T00:58:55,027         |
2025-10-18T00:58:55,112   MDAnalysis/lib/src/transformations/transformations.c: At top level:
2025-10-18T00:58:55,112   MDAnalysis/lib/src/transformations/transformations.c:910:1: warning: ‘PyConverter_DoubleVector4Copy’ defined but not used [-Wunused-function]
2025-10-18T00:58:55,113     910 | PyConverter_DoubleVector4Copy(
2025-10-18T00:58:55,113         | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T00:58:55,114   MDAnalysis/lib/src/transformations/transformations.c:804:1: warning: ‘PyConverter_DoubleArrayOrNone’ defined but not used [-Wunused-function]
2025-10-18T00:58:55,115     804 | PyConverter_DoubleArrayOrNone(
2025-10-18T00:58:55,115         | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T00:58:55,116   MDAnalysis/lib/src/transformations/transformations.c:774:1: warning: ‘PyConverter_DoubleArray’ defined but not used [-Wunused-function]
2025-10-18T00:58:55,116     774 | PyConverter_DoubleArray(
2025-10-18T00:58:55,117         | ^~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T00:59:01,785   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations/transformations.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_transformations.cpython-311-arm-linux-gnueabihf.so
2025-10-18T00:59:01,903   building 'MDAnalysis.lib.formats.libmdaxdr' extension
2025-10-18T00:59:01,905   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src
2025-10-18T00:59:01,906   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats -I/usr/include/python3.11 -c MDAnalysis/lib/formats/libmdaxdr.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.o -std=c11 -O3 -funroll-loops -fsigned-zeros
2025-10-18T00:59:02,371   In file included from MDAnalysis/lib/formats/libmdaxdr.c:1187:
2025-10-18T00:59:02,372   MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2025-10-18T00:59:02,372       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-10-18T00:59:02,373         |
2025-10-18T00:59:02,373   In file included from MDAnalysis/lib/formats/libmdaxdr.c:1188:
2025-10-18T00:59:02,374   MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2025-10-18T00:59:02,375       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-10-18T00:59:02,375         |
2025-10-18T00:59:02,376   In file included from MDAnalysis/lib/formats/include/xdrfile_xtc.h:43:
2025-10-18T00:59:02,376   MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2025-10-18T00:59:02,377       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-10-18T00:59:02,377         |
2025-10-18T00:59:02,378   In file included from MDAnalysis/lib/formats/libmdaxdr.c:1189:
2025-10-18T00:59:02,379   MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2025-10-18T00:59:02,379       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-10-18T00:59:02,380         |
2025-10-18T00:59:44,265   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats -I/usr/include/python3.11 -c MDAnalysis/lib/formats/src/trr_seek.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/trr_seek.o -std=c11 -O3 -funroll-loops -fsigned-zeros
2025-10-18T00:59:44,339   In file included from MDAnalysis/lib/formats/src/trr_seek.c:30:
2025-10-18T00:59:44,340   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2025-10-18T00:59:44,340       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-10-18T00:59:44,341         |
2025-10-18T00:59:44,346   In file included from MDAnalysis/lib/formats/src/trr_seek.c:31:
2025-10-18T00:59:44,346   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2025-10-18T00:59:44,347       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-10-18T00:59:44,347         |
2025-10-18T00:59:44,348   In file included from /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include/xdrfile_trr.h:42:
2025-10-18T00:59:44,348   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2025-10-18T00:59:44,349       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-10-18T00:59:44,349         |
2025-10-18T00:59:44,352   MDAnalysis/lib/formats/src/trr_seek.c: In function ‘read_trr_n_frames’:
2025-10-18T00:59:44,353   MDAnalysis/lib/formats/src/trr_seek.c:39:27: warning: unused variable ‘totalframebytes’ [-Wunused-variable]
2025-10-18T00:59:44,353      39 |   int result, framebytes, totalframebytes;
2025-10-18T00:59:44,354         |                           ^~~~~~~~~~~~~~~
2025-10-18T00:59:44,355   MDAnalysis/lib/formats/src/trr_seek.c:38:15: warning: unused variable ‘lambda’ [-Wunused-variable]
2025-10-18T00:59:44,355      38 |   float time, lambda;
2025-10-18T00:59:44,356         |               ^~~~~~
2025-10-18T00:59:44,356   MDAnalysis/lib/formats/src/trr_seek.c:38:9: warning: unused variable ‘time’ [-Wunused-variable]
2025-10-18T00:59:44,357      38 |   float time, lambda;
2025-10-18T00:59:44,358         |         ^~~~
2025-10-18T00:59:44,461   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats -I/usr/include/python3.11 -c MDAnalysis/lib/formats/src/xdrfile.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile.o -std=c11 -O3 -funroll-loops -fsigned-zeros
2025-10-18T00:59:44,575   In file included from MDAnalysis/lib/formats/src/xdrfile.c:62:
2025-10-18T00:59:44,575   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2025-10-18T00:59:44,576       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-10-18T00:59:44,576         |
2025-10-18T00:59:44,586   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘sizeofint’:
2025-10-18T00:59:44,586   MDAnalysis/lib/formats/src/xdrfile.c:501:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2025-10-18T00:59:44,587     501 |     while (size >= num && num_of_bits < 32)
2025-10-18T00:59:44,588         |                 ^~
2025-10-18T00:59:44,588   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘sizeofints’:
2025-10-18T00:59:44,589   MDAnalysis/lib/formats/src/xdrfile.c:547:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-10-18T00:59:44,589     547 |     while (bytes[num_of_bytes] >= num)
2025-10-18T00:59:44,590         |                                ^~
2025-10-18T00:59:44,590   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘encodeints’:
2025-10-18T00:59:44,591   MDAnalysis/lib/formats/src/xdrfile.c:656:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2025-10-18T00:59:44,591     656 |     if (num_of_bits >= num_of_bytes * 8)
2025-10-18T00:59:44,592         |                     ^~
2025-10-18T00:59:44,593   MDAnalysis/lib/formats/src/xdrfile.c:658:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2025-10-18T00:59:44,593     658 |                 for (i = 0; i < num_of_bytes; i++)
2025-10-18T00:59:44,594         |                               ^
2025-10-18T00:59:44,594   MDAnalysis/lib/formats/src/xdrfile.c:666:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2025-10-18T00:59:44,595     666 |                 for (i = 0; i < num_of_bytes-1; i++)
2025-10-18T00:59:44,595         |                               ^
2025-10-18T00:59:44,596   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘decodebits’:
2025-10-18T00:59:44,597   MDAnalysis/lib/formats/src/xdrfile.c:706:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-10-18T00:59:44,597     706 |                 if (lastbits < num_of_bits)
2025-10-18T00:59:44,598         |                              ^
2025-10-18T00:59:44,598   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_decompress_coord_float’:
2025-10-18T00:59:44,599   MDAnalysis/lib/formats/src/xdrfile.c:816:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-10-18T00:59:44,599     816 |         if(size3>xfp->buf1size)
2025-10-18T00:59:44,600         |                 ^
2025-10-18T00:59:44,601   MDAnalysis/lib/formats/src/xdrfile.c:868:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-10-18T00:59:44,601     868 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2025-10-18T00:59:44,602         |                          ^
2025-10-18T00:59:44,602   MDAnalysis/lib/formats/src/xdrfile.c:868:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2025-10-18T00:59:44,603     868 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2025-10-18T00:59:44,604         |                                            ^~~
2025-10-18T00:59:44,604   MDAnalysis/lib/formats/src/xdrfile.c:794:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2025-10-18T00:59:44,605     794 |         int smallnum, smaller, larger, i, is_smaller, run;
2025-10-18T00:59:44,605         |                                ^~~~~~
2025-10-18T00:59:44,606   MDAnalysis/lib/formats/src/xdrfile.c:791:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2025-10-18T00:59:44,607     791 |         int smallidx, minidx, maxidx;
2025-10-18T00:59:44,607         |                       ^~~~~~
2025-10-18T00:59:44,608   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2025-10-18T00:59:44,608   MDAnalysis/lib/formats/src/xdrfile.c:1012:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-10-18T00:59:44,609    1012 |         if(size3>xfp->buf1size)
2025-10-18T00:59:44,609         |                 ^
2025-10-18T00:59:44,610   MDAnalysis/lib/formats/src/xdrfile.c:1135:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2025-10-18T00:59:44,610    1135 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2025-10-18T00:59:44,611         |                         ^
2025-10-18T00:59:44,611   MDAnalysis/lib/formats/src/xdrfile.c:1141:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-10-18T00:59:44,612    1141 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2025-10-18T00:59:44,612         |                          ^
2025-10-18T00:59:44,613   MDAnalysis/lib/formats/src/xdrfile.c:1141:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2025-10-18T00:59:44,613    1141 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2025-10-18T00:59:44,614         |                                            ^~~
2025-10-18T00:59:44,614   MDAnalysis/lib/formats/src/xdrfile.c:1273:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2025-10-18T00:59:44,615    1273 |         if(tmp==(unsigned int)buf2[0])
2025-10-18T00:59:44,615         |               ^~
2025-10-18T00:59:44,616   MDAnalysis/lib/formats/src/xdrfile.c:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2025-10-18T00:59:44,616    1001 |         int errval=1;
2025-10-18T00:59:44,617         |             ^~~~~~
2025-10-18T00:59:44,618   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_decompress_coord_double’:
2025-10-18T00:59:44,618   MDAnalysis/lib/formats/src/xdrfile.c:1313:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-10-18T00:59:44,619    1313 |         if(size3>xfp->buf1size)
2025-10-18T00:59:44,619         |                 ^
2025-10-18T00:59:44,620   MDAnalysis/lib/formats/src/xdrfile.c:1368:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-10-18T00:59:44,620    1368 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2025-10-18T00:59:44,621         |                          ^
2025-10-18T00:59:44,622   MDAnalysis/lib/formats/src/xdrfile.c:1368:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2025-10-18T00:59:44,622    1368 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2025-10-18T00:59:44,623         |                                            ^~~
2025-10-18T00:59:44,624   MDAnalysis/lib/formats/src/xdrfile.c:1290:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2025-10-18T00:59:44,625    1290 |         int smallnum, smaller, larger, i, is_smaller, run;
2025-10-18T00:59:44,625         |                                ^~~~~~
2025-10-18T00:59:44,626   MDAnalysis/lib/formats/src/xdrfile.c:1287:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2025-10-18T00:59:44,627    1287 |         int smallidx, minidx, maxidx;
2025-10-18T00:59:44,627         |                       ^~~~~~
2025-10-18T00:59:44,628   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2025-10-18T00:59:44,628   MDAnalysis/lib/formats/src/xdrfile.c:1504:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-10-18T00:59:44,629    1504 |         if(size3>xfp->buf1size) {
2025-10-18T00:59:44,630         |                 ^
2025-10-18T00:59:44,635   MDAnalysis/lib/formats/src/xdrfile.c:1619:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2025-10-18T00:59:44,636    1619 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2025-10-18T00:59:44,636         |                         ^
2025-10-18T00:59:44,636   MDAnalysis/lib/formats/src/xdrfile.c:1624:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-10-18T00:59:44,637    1624 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2025-10-18T00:59:44,637         |                          ^
2025-10-18T00:59:44,638   MDAnalysis/lib/formats/src/xdrfile.c:1624:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2025-10-18T00:59:44,638    1624 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2025-10-18T00:59:44,639         |                                            ^~~
2025-10-18T00:59:44,643   MDAnalysis/lib/formats/src/xdrfile.c:1734:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2025-10-18T00:59:44,643    1734 |         if(tmp==(unsigned int)buf2[0])
2025-10-18T00:59:44,644         |               ^~
2025-10-18T00:59:44,644   MDAnalysis/lib/formats/src/xdrfile.c:1494:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2025-10-18T00:59:44,645    1494 |         int errval=1;
2025-10-18T00:59:44,645         |             ^~~~~~
2025-10-18T00:59:47,092   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2025-10-18T00:59:47,093   MDAnalysis/lib/formats/src/xdrfile.c:1157:42: warning: ‘prevcoord[2]’ may be used uninitialized [-Wmaybe-uninitialized]
2025-10-18T00:59:47,093    1157 |                         abs(thiscoord[2] - prevcoord[2]) < larger) {
2025-10-18T00:59:47,094         |                             ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-10-18T00:59:47,094   MDAnalysis/lib/formats/src/xdrfile.c:999:39: note: ‘prevcoord[2]’ was declared here
2025-10-18T00:59:47,095     999 |         int tmp, tmpsum, *thiscoord,  prevcoord[3];
2025-10-18T00:59:47,095         |                                       ^~~~~~~~~
2025-10-18T00:59:47,096   MDAnalysis/lib/formats/src/xdrfile.c:1156:42: warning: ‘prevcoord[1]’ may be used uninitialized [-Wmaybe-uninitialized]
2025-10-18T00:59:47,096    1156 |                         abs(thiscoord[1] - prevcoord[1]) < larger &&
2025-10-18T00:59:47,097         |                             ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-10-18T00:59:47,098   MDAnalysis/lib/formats/src/xdrfile.c:999:39: note: ‘prevcoord[1]’ was declared here
2025-10-18T00:59:47,098     999 |         int tmp, tmpsum, *thiscoord,  prevcoord[3];
2025-10-18T00:59:47,099         |                                       ^~~~~~~~~
2025-10-18T00:59:47,100   MDAnalysis/lib/formats/src/xdrfile.c:1155:42: warning: ‘prevcoord[0]’ may be used uninitialized [-Wmaybe-uninitialized]
2025-10-18T00:59:47,100    1155 |                         abs(thiscoord[0] - prevcoord[0]) < larger &&
2025-10-18T00:59:47,101         |                             ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-10-18T00:59:47,102   MDAnalysis/lib/formats/src/xdrfile.c:999:39: note: ‘prevcoord[0]’ was declared here
2025-10-18T00:59:47,102     999 |         int tmp, tmpsum, *thiscoord,  prevcoord[3];
2025-10-18T00:59:47,103         |                                       ^~~~~~~~~
2025-10-18T00:59:48,081   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2025-10-18T00:59:48,082   MDAnalysis/lib/formats/src/xdrfile.c:1639:42: warning: ‘prevcoord[2]’ may be used uninitialized [-Wmaybe-uninitialized]
2025-10-18T00:59:48,083    1639 |                         abs(thiscoord[2] - prevcoord[2]) < larger) {
2025-10-18T00:59:48,083         |                             ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-10-18T00:59:48,084   MDAnalysis/lib/formats/src/xdrfile.c:1492:39: note: ‘prevcoord[2]’ was declared here
2025-10-18T00:59:48,084    1492 |         int tmp, tmpsum, *thiscoord,  prevcoord[3];
2025-10-18T00:59:48,085         |                                       ^~~~~~~~~
2025-10-18T00:59:48,085   MDAnalysis/lib/formats/src/xdrfile.c:1638:42: warning: ‘prevcoord[1]’ may be used uninitialized [-Wmaybe-uninitialized]
2025-10-18T00:59:48,086    1638 |                         abs(thiscoord[1] - prevcoord[1]) < larger &&
2025-10-18T00:59:48,086         |                             ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-10-18T00:59:48,086   MDAnalysis/lib/formats/src/xdrfile.c:1492:39: note: ‘prevcoord[1]’ was declared here
2025-10-18T00:59:48,087    1492 |         int tmp, tmpsum, *thiscoord,  prevcoord[3];
2025-10-18T00:59:48,087         |                                       ^~~~~~~~~
2025-10-18T00:59:48,088   MDAnalysis/lib/formats/src/xdrfile.c:1637:42: warning: ‘prevcoord[0]’ may be used uninitialized [-Wmaybe-uninitialized]
2025-10-18T00:59:48,088    1637 |                         abs(thiscoord[0] - prevcoord[0]) < larger &&
2025-10-18T00:59:48,089         |                             ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2025-10-18T00:59:48,089   MDAnalysis/lib/formats/src/xdrfile.c:1492:39: note: ‘prevcoord[0]’ was declared here
2025-10-18T00:59:48,090    1492 |         int tmp, tmpsum, *thiscoord,  prevcoord[3];
2025-10-18T00:59:48,090         |                                       ^~~~~~~~~
2025-10-18T00:59:49,308   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats -I/usr/include/python3.11 -c MDAnalysis/lib/formats/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile_trr.o -std=c11 -O3 -funroll-loops -fsigned-zeros
2025-10-18T00:59:49,378   In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:38:
2025-10-18T00:59:49,379   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2025-10-18T00:59:49,379       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-10-18T00:59:49,380         |
2025-10-18T00:59:49,383   In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:39:
2025-10-18T00:59:49,384   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2025-10-18T00:59:49,384       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-10-18T00:59:49,385         |
2025-10-18T00:59:49,385   In file included from /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include/xdrfile_trr.h:42:
2025-10-18T00:59:49,386   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2025-10-18T00:59:49,386       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-10-18T00:59:49,387         |
2025-10-18T00:59:49,388   MDAnalysis/lib/formats/src/xdrfile_trr.c: In function ‘do_trnheader’:
2025-10-18T00:59:49,388   MDAnalysis/lib/formats/src/xdrfile_trr.c:78:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2025-10-18T00:59:49,389      78 |     if (slen != strlen(version) + 1)
2025-10-18T00:59:49,390         |              ^~
2025-10-18T00:59:49,390   MDAnalysis/lib/formats/src/xdrfile_trr.c:86:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2025-10-18T00:59:49,391      86 |     if (xdrfile_write_string(version, xd) != (strlen(version) + 1))
2025-10-18T00:59:49,391         |                                           ^~
2025-10-18T00:59:49,408   MDAnalysis/lib/formats/src/xdrfile_trr.c: In function ‘write_trr’:
2025-10-18T00:59:49,409   MDAnalysis/lib/formats/src/xdrfile_trr.c:408:10: warning: ‘plcholder’ is used uninitialized [-Wuninitialized]
2025-10-18T00:59:49,409     408 |   return do_trn(xd, 0, &step, &t, &lambda, box, &natoms, x, v, f, plcholder);
2025-10-18T00:59:49,410         |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T00:59:49,410   MDAnalysis/lib/formats/src/xdrfile_trr.c:407:8: note: ‘plcholder’ was declared here
2025-10-18T00:59:49,411     407 |   int *plcholder;
2025-10-18T00:59:49,411         |        ^~~~~~~~~
2025-10-18T00:59:50,621   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats -I/usr/include/python3.11 -c MDAnalysis/lib/formats/src/xdrfile_xtc.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile_xtc.o -std=c11 -O3 -funroll-loops -fsigned-zeros
2025-10-18T00:59:50,664   In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:30:
2025-10-18T00:59:50,664   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2025-10-18T00:59:50,665       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-10-18T00:59:50,665         |
2025-10-18T00:59:50,677   In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:31:
2025-10-18T00:59:50,678   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2025-10-18T00:59:50,678       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-10-18T00:59:50,679         |
2025-10-18T00:59:50,679   In file included from /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include/xdrfile_xtc.h:43:
2025-10-18T00:59:50,680   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2025-10-18T00:59:50,680       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-10-18T00:59:50,681         |
2025-10-18T00:59:50,802   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats -I/usr/include/python3.11 -c MDAnalysis/lib/formats/src/xtc_seek.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xtc_seek.o -std=c11 -O3 -funroll-loops -fsigned-zeros
2025-10-18T00:59:50,843   In file included from MDAnalysis/lib/formats/src/xtc_seek.c:25:
2025-10-18T00:59:50,844   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2025-10-18T00:59:50,845       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-10-18T00:59:50,845         |
2025-10-18T00:59:50,856   In file included from MDAnalysis/lib/formats/src/xtc_seek.c:26:
2025-10-18T00:59:50,857   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2025-10-18T00:59:50,857       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-10-18T00:59:50,858         |
2025-10-18T00:59:50,858   In file included from /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include/xdrfile_xtc.h:43:
2025-10-18T00:59:50,859   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2025-10-18T00:59:50,859       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-10-18T00:59:50,860         |
2025-10-18T00:59:51,021   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/trr_seek.o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile.o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xtc_seek.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.cpython-311-arm-linux-gnueabihf.so
2025-10-18T00:59:51,204   building 'MDAnalysis.lib.formats.cython_util' extension
2025-10-18T00:59:51,205   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c MDAnalysis/lib/formats/cython_util.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.o -std=c11 -O3 -funroll-loops -fsigned-zeros
2025-10-18T01:00:16,173   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.cpython-311-arm-linux-gnueabihf.so
2025-10-18T01:00:16,311   building 'MDAnalysis.analysis.encore.cutils' extension
2025-10-18T01:00:16,312   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore
2025-10-18T01:00:16,313   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/cutils.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/cutils.o -std=c11 -funroll-loops -fsigned-zeros -O3
2025-10-18T01:00:21,416   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/cutils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/cutils.cpython-311-arm-linux-gnueabihf.so
2025-10-18T01:00:21,522   building 'MDAnalysis.analysis.encore.clustering.affinityprop' extension
2025-10-18T01:00:21,523   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering
2025-10-18T01:00:21,524   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/src
2025-10-18T01:00:21,525   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/clustering/affinityprop.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.o -std=c11 -funroll-loops -fsigned-zeros -O3
2025-10-18T01:00:35,609   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/clustering/src/ap.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/src/ap.o -std=c11 -funroll-loops -fsigned-zeros -O3
2025-10-18T01:00:36,604   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/src/ap.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-311-arm-linux-gnueabihf.so
2025-10-18T01:00:36,731   building 'MDAnalysis.analysis.encore.dimensionality_reduction.stochasticproxembed' extension
2025-10-18T01:00:36,731   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src
2025-10-18T01:00:36,733   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o -std=c11 -funroll-loops -fsigned-zeros -O3
2025-10-18T01:00:37,543   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.11 -c MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -std=c11 -funroll-loops -fsigned-zeros -O3
2025-10-18T01:00:44,838   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o build/temp.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-311-arm-linux-gnueabihf.so
2025-10-18T01:00:44,968   building 'MDAnalysis.lib._cutil' extension
2025-10-18T01:00:44,969   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include -I/usr/include/python3.11 -c MDAnalysis/lib/_cutil.cpp -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.o -O3 -funroll-loops -fsigned-zeros -std=c++11
2025-10-18T01:00:49,119   In file included from MDAnalysis/lib/_cutil.cpp:1198:
2025-10-18T01:00:49,120   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:827:13: warning: ‘void _calc_dihedral_triclinic(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:00:49,121     827 | static void _calc_dihedral_triclinic(coordinate* atom1, coordinate* atom2,
2025-10-18T01:00:49,122         |             ^~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:00:49,122   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:791:13: warning: ‘void _calc_dihedral_ortho(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:00:49,123     791 | static void _calc_dihedral_ortho(coordinate* atom1, coordinate* atom2,
2025-10-18T01:00:49,124         |             ^~~~~~~~~~~~~~~~~~~~
2025-10-18T01:00:49,124   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:764:13: warning: ‘void _calc_dihedral(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:00:49,125     764 | static void _calc_dihedral(coordinate* atom1, coordinate* atom2,
2025-10-18T01:00:49,125         |             ^~~~~~~~~~~~~~
2025-10-18T01:00:49,126   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:689:13: warning: ‘void _calc_angle_triclinic(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:00:49,127     689 | static void _calc_angle_triclinic(coordinate* atom1, coordinate* atom2,
2025-10-18T01:00:49,127         |             ^~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:00:49,128   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:647:13: warning: ‘void _calc_angle_ortho(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:00:49,128     647 | static void _calc_angle_ortho(coordinate* atom1, coordinate* atom2,
2025-10-18T01:00:49,129         |             ^~~~~~~~~~~~~~~~~
2025-10-18T01:00:49,130   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:618:13: warning: ‘void _calc_angle(float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:00:49,130     618 | static void _calc_angle(coordinate* atom1, coordinate* atom2,
2025-10-18T01:00:49,131         |             ^~~~~~~~~~~
2025-10-18T01:00:49,132   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:596:13: warning: ‘void _calc_bond_distance_triclinic(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:00:49,132     596 | static void _calc_bond_distance_triclinic(coordinate* atom1, coordinate* atom2,
2025-10-18T01:00:49,133         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:00:49,134   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:573:13: warning: ‘void _calc_bond_distance_ortho(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:00:49,134     573 | static void _calc_bond_distance_ortho(coordinate* atom1, coordinate* atom2,
2025-10-18T01:00:49,135         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:00:49,135   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:557:13: warning: ‘void _calc_bond_distance(float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:00:49,136     557 | static void _calc_bond_distance(coordinate* atom1, coordinate* atom2,
2025-10-18T01:00:49,137         |             ^~~~~~~~~~~~~~~~~~~
2025-10-18T01:00:49,137   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:505:13: warning: ‘void _calc_self_distance_array_triclinic(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:00:49,138     505 | static void _calc_self_distance_array_triclinic(coordinate* ref, uint64_t numref,
2025-10-18T01:00:49,138         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:00:49,139   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:472:13: warning: ‘void _calc_self_distance_array_ortho(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:00:49,140     472 | static void _calc_self_distance_array_ortho(coordinate* ref, uint64_t numref,
2025-10-18T01:00:49,140         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:00:49,141   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:448:13: warning: ‘void _calc_self_distance_array(float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:00:49,141     448 | static void _calc_self_distance_array(coordinate* ref, uint64_t numref,
2025-10-18T01:00:49,142         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:00:49,142   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:424:13: warning: ‘void _calc_distance_array_triclinic(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:00:49,143     424 | static void _calc_distance_array_triclinic(coordinate* ref, uint64_t numref,
2025-10-18T01:00:49,143         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:00:49,144   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:399:13: warning: ‘void _calc_distance_array_ortho(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:00:49,145     399 | static void _calc_distance_array_ortho(coordinate* ref, uint64_t numref, coordinate* conf,
2025-10-18T01:00:49,145         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:00:49,146   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:381:13: warning: ‘void _calc_distance_array(float (*)[3], uint64_t, float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:00:49,146     381 | static void _calc_distance_array(coordinate* ref, uint64_t numref, coordinate* conf,
2025-10-18T01:00:49,147         |             ^~~~~~~~~~~~~~~~~~~~
2025-10-18T01:00:49,148   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:116:13: warning: ‘void _ortho_pbc(float (*)[3], uint64_t, float*)’ defined but not used [-Wunused-function]
2025-10-18T01:00:49,148     116 | static void _ortho_pbc(coordinate* coords, uint64_t numcoords, float* box)
2025-10-18T01:00:49,149         |             ^~~~~~~~~~
2025-10-18T01:01:23,693   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.cpython-311-arm-linux-gnueabihf.so
2025-10-18T01:01:24,007   building 'MDAnalysis.lib._augment' extension
2025-10-18T01:01:24,008   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c MDAnalysis/lib/_augment.cpp -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/_augment.o -O3 -funroll-loops -fsigned-zeros -std=c++11
2025-10-18T01:01:55,892   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/_augment.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_augment.cpython-311-arm-linux-gnueabihf.so
2025-10-18T01:01:56,174   building 'MDAnalysis.lib.nsgrid' extension
2025-10-18T01:01:56,175   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include -I/usr/include/python3.11 -c MDAnalysis/lib/nsgrid.cpp -o build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/nsgrid.o -O3 -funroll-loops -fsigned-zeros -std=c++11
2025-10-18T01:01:59,650   In file included from MDAnalysis/lib/nsgrid.cpp:1165:
2025-10-18T01:01:59,650   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:827:13: warning: ‘void _calc_dihedral_triclinic(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:01:59,651     827 | static void _calc_dihedral_triclinic(coordinate* atom1, coordinate* atom2,
2025-10-18T01:01:59,652         |             ^~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:01:59,653   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:791:13: warning: ‘void _calc_dihedral_ortho(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:01:59,653     791 | static void _calc_dihedral_ortho(coordinate* atom1, coordinate* atom2,
2025-10-18T01:01:59,654         |             ^~~~~~~~~~~~~~~~~~~~
2025-10-18T01:01:59,654   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:764:13: warning: ‘void _calc_dihedral(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:01:59,655     764 | static void _calc_dihedral(coordinate* atom1, coordinate* atom2,
2025-10-18T01:01:59,656         |             ^~~~~~~~~~~~~~
2025-10-18T01:01:59,656   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:689:13: warning: ‘void _calc_angle_triclinic(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:01:59,657     689 | static void _calc_angle_triclinic(coordinate* atom1, coordinate* atom2,
2025-10-18T01:01:59,657         |             ^~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:01:59,658   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:647:13: warning: ‘void _calc_angle_ortho(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:01:59,659     647 | static void _calc_angle_ortho(coordinate* atom1, coordinate* atom2,
2025-10-18T01:01:59,659         |             ^~~~~~~~~~~~~~~~~
2025-10-18T01:01:59,660   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:618:13: warning: ‘void _calc_angle(float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:01:59,660     618 | static void _calc_angle(coordinate* atom1, coordinate* atom2,
2025-10-18T01:01:59,661         |             ^~~~~~~~~~~
2025-10-18T01:01:59,661   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:596:13: warning: ‘void _calc_bond_distance_triclinic(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:01:59,662     596 | static void _calc_bond_distance_triclinic(coordinate* atom1, coordinate* atom2,
2025-10-18T01:01:59,662         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:01:59,663   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:573:13: warning: ‘void _calc_bond_distance_ortho(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:01:59,664     573 | static void _calc_bond_distance_ortho(coordinate* atom1, coordinate* atom2,
2025-10-18T01:01:59,664         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:01:59,665   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:557:13: warning: ‘void _calc_bond_distance(float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:01:59,665     557 | static void _calc_bond_distance(coordinate* atom1, coordinate* atom2,
2025-10-18T01:01:59,666         |             ^~~~~~~~~~~~~~~~~~~
2025-10-18T01:01:59,666   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:505:13: warning: ‘void _calc_self_distance_array_triclinic(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:01:59,667     505 | static void _calc_self_distance_array_triclinic(coordinate* ref, uint64_t numref,
2025-10-18T01:01:59,667         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:01:59,668   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:472:13: warning: ‘void _calc_self_distance_array_ortho(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:01:59,668     472 | static void _calc_self_distance_array_ortho(coordinate* ref, uint64_t numref,
2025-10-18T01:01:59,669         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:01:59,669   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:448:13: warning: ‘void _calc_self_distance_array(float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:01:59,670     448 | static void _calc_self_distance_array(coordinate* ref, uint64_t numref,
2025-10-18T01:01:59,670         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:01:59,671   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:424:13: warning: ‘void _calc_distance_array_triclinic(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:01:59,671     424 | static void _calc_distance_array_triclinic(coordinate* ref, uint64_t numref,
2025-10-18T01:01:59,672         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:01:59,673   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:399:13: warning: ‘void _calc_distance_array_ortho(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:01:59,673     399 | static void _calc_distance_array_ortho(coordinate* ref, uint64_t numref, coordinate* conf,
2025-10-18T01:01:59,674         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:01:59,674   /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6/MDAnalysis/lib/include/calc_distances.h:381:13: warning: ‘void _calc_distance_array(float (*)[3], uint64_t, float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2025-10-18T01:01:59,675     381 | static void _calc_distance_array(coordinate* ref, uint64_t numref, coordinate* conf,
2025-10-18T01:01:59,675         |             ^~~~~~~~~~~~~~~~~~~~
2025-10-18T01:02:30,371   In file included from /usr/include/c++/12/vector:70,
2025-10-18T01:02:30,372                    from MDAnalysis/lib/nsgrid.cpp:1163:
2025-10-18T01:02:30,372   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2025-10-18T01:02:30,373   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2025-10-18T01:02:30,373     439 |       vector<_Tp, _Alloc>::
2025-10-18T01:02:30,374         |       ^~~~~~~~~~~~~~~~~~~
2025-10-18T01:02:30,413   In file included from /usr/include/c++/12/vector:64:
2025-10-18T01:02:30,414   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2025-10-18T01:02:30,414       inlined from ‘void __pyx_f_10MDAnalysis_3lib_6nsgrid_9NSResults_add_neighbors(__pyx_obj_10MDAnalysis_3lib_6nsgrid_NSResults*, int, int, double)’ at MDAnalysis/lib/nsgrid.cpp:20454:39:
2025-10-18T01:02:30,415   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2025-10-18T01:02:30,415    1287 |           _M_realloc_insert(end(), __x);
2025-10-18T01:02:30,416         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2025-10-18T01:02:30,461   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2025-10-18T01:02:30,462   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2025-10-18T01:02:30,463     439 |       vector<_Tp, _Alloc>::
2025-10-18T01:02:30,463         |       ^~~~~~~~~~~~~~~~~~~
2025-10-18T01:02:30,815   In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
2025-10-18T01:02:30,816       inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
2025-10-18T01:02:30,816       inlined from ‘std::vector<double> __pyx_convert_vector_from_py_double(PyObject*)’ at MDAnalysis/lib/nsgrid.cpp:20005:26,
2025-10-18T01:02:30,817       inlined from ‘PyObject* __pyx_f_10MDAnalysis_3lib_6nsgrid___pyx_unpickle_NSResults__set_state(__pyx_obj_10MDAnalysis_3lib_6nsgrid_NSResults*, PyObject*)’ at MDAnalysis/lib/nsgrid.cpp:25431:50:
2025-10-18T01:02:30,818   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2025-10-18T01:02:30,818     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2025-10-18T01:02:30,819         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2025-10-18T01:02:34,470   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/MDAnalysis/lib/nsgrid.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/nsgrid.cpython-311-arm-linux-gnueabihf.so
2025-10-18T01:02:34,770   building 'MDAnalysis.coordinates.timestep' extension
2025-10-18T01:02:34,771   creating build/temp.linux-armv7l-cpython-311/MDAnalysis/coordinates
2025-10-18T01:02:34,772   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-eokb227q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c MDAnalysis/coordinates/timestep.cpp -o build/temp.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.o -O3 -funroll-loops -fsigned-zeros -std=c++11
2025-10-18T01:02:59,383   arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.cpython-311-arm-linux-gnueabihf.so
2025-10-18T01:02:59,585   installing to build/bdist.linux-armv7l/wheel
2025-10-18T01:02:59,585   running install
2025-10-18T01:02:59,609   running install_lib
2025-10-18T01:02:59,617   creating build/bdist.linux-armv7l/wheel
2025-10-18T01:02:59,619   creating build/bdist.linux-armv7l/wheel/doc
2025-10-18T01:02:59,621   copying build/lib.linux-armv7l-cpython-311/doc/README -> build/bdist.linux-armv7l/wheel/./doc
2025-10-18T01:02:59,624   creating build/bdist.linux-armv7l/wheel/doc/sphinx
2025-10-18T01:02:59,625   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/Makefile -> build/bdist.linux-armv7l/wheel/./doc/sphinx
2025-10-18T01:02:59,629   creating build/bdist.linux-armv7l/wheel/doc/sphinx/source
2025-10-18T01:02:59,630   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/conf.py -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source
2025-10-18T01:02:59,634   creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/images
2025-10-18T01:02:59,635   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/images/msd_demo_plot.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images
2025-10-18T01:02:59,639   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/images/RSMD_plot.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images
2025-10-18T01:02:59,642   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/images/janin_ref_plot.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images
2025-10-18T01:02:59,645   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/images/parallelization_time.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images
2025-10-18T01:02:59,662   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/images/AnalysisBase_parallel.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images
2025-10-18T01:02:59,668   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/images/rama_ref_plot.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images
2025-10-18T01:02:59,671   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/images/janin_demo_plot.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images
2025-10-18T01:02:59,674   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/images/rama_demo_plot.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images
2025-10-18T01:02:59,677   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/index.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source
2025-10-18T01:02:59,679   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/references.bib -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source
2025-10-18T01:02:59,683   creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages
2025-10-18T01:02:59,684   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/visualization_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages
2025-10-18T01:02:59,687   creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/core
2025-10-18T01:02:59,688   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/core/init.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core
2025-10-18T01:02:59,690   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/core/topologyattrs.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core
2025-10-18T01:02:59,692   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/core/universe.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core
2025-10-18T01:02:59,694   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/core/selection.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core
2025-10-18T01:02:59,696   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/core/topology.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core
2025-10-18T01:02:59,698   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/core/topologyobjects.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core
2025-10-18T01:02:59,699   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/core/accessors.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core
2025-10-18T01:02:59,701   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/core/groups.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core
2025-10-18T01:02:59,703   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/exceptions.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages
2025-10-18T01:02:59,705   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/auxiliary_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages
2025-10-18T01:02:59,707   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages
2025-10-18T01:02:59,710   creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,711   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/pca.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,713   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/gnm.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,716   creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/analysis/encore
2025-10-18T01:02:59,717   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/encore/bootstrap.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore
2025-10-18T01:02:59,719   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/encore/utils.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore
2025-10-18T01:02:59,721   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/encore/covariance.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore
2025-10-18T01:02:59,723   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/encore/confdistmatrix.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore
2025-10-18T01:02:59,725   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/encore/similarity.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore
2025-10-18T01:02:59,727   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/encore/clustering.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore
2025-10-18T01:02:59,729   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/encore/dimensionality_reduction.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore
2025-10-18T01:02:59,731   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/hole2.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,733   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/leaflet.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,735   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/bat.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,736   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/dielectric.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,738   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/density.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,740   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/rdf.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,742   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/atomicdistances.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,744   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,746   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/distances.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,747   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/rms.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,749   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/hbond_autocorrel_deprecated.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,751   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/helix_analysis.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,753   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/encore.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,755   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/polymer.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,757   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/results.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,759   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/nucleicacids.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,761   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/nuclinfo.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,763   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/dssp.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,765   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/hydrogenbonds.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,767   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/lineardensity.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,769   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/waterdynamics.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,770   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/diffusionmap.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,772   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/contacts.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,774   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/msd.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,776   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/legacy_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,778   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/wbridge_analysis.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,780   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/backends.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,782   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/data.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,784   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/dihedrals.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,786   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/align.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,788   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/hbond_autocorrel.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,789   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/parallelization.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,792   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/psa.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis
2025-10-18T01:02:59,794   creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/analysis/legacy
2025-10-18T01:02:59,795   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis/legacy/x3dna.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/legacy
2025-10-18T01:02:59,798   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/overview.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages
2025-10-18T01:02:59,800   creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/visualization
2025-10-18T01:02:59,801   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/visualization/testing_streamline.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/visualization
2025-10-18T01:02:59,811   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/visualization/streamlines_3D.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/visualization
2025-10-18T01:02:59,813   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/visualization/streamlines.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/visualization
2025-10-18T01:02:59,815   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/visualization/test_streamplot_3D.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/visualization
2025-10-18T01:02:59,824   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/trajectory_transformations.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages
2025-10-18T01:02:59,827   creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/transformations
2025-10-18T01:02:59,828   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/transformations/rotate.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations
2025-10-18T01:02:59,830   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/transformations/wrap.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations
2025-10-18T01:02:59,832   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/transformations/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations
2025-10-18T01:02:59,834   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/transformations/nojump.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations
2025-10-18T01:02:59,836   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/transformations/positionaveraging.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations
2025-10-18T01:02:59,838   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/transformations/translate.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations
2025-10-18T01:02:59,840   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/transformations/fit.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations
2025-10-18T01:02:59,842   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/transformations/boxdimensions.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations
2025-10-18T01:02:59,845   creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,846   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/init.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,848   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/TRZ.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,850   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/MOL2.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,852   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/LAMMPS.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,854   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/DCD.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,856   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/INPCRD.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,858   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/DMS.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,860   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/XTC.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,862   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,864   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/DLPoly.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,866   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/TRR.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,868   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/chain.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,870   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/PQR.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,872   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/IMD.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,874   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/FHIAIMS.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,875   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/PDB.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,877   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/CRD.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,879   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/core.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,881   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/XDR.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,883   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/H5MD.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,885   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/GSD.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,888   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/PDBQT.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,890   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/TNG.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,892   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/timestep.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,894   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/TRC.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,896   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/GMS.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,899   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/MMTF.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,901   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/TXYZ.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,902   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/chemfiles.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,904   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/GRO.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,906   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/TRJ.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,908   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/pickle_readers.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,910   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/null.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,912   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/XYZ.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,914   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/memory.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,916   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/NAMDBIN.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,918   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/coordinates/TPR.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates
2025-10-18T01:02:59,920   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/selections_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages
2025-10-18T01:02:59,922   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/converters.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages
2025-10-18T01:02:59,925   creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/converters
2025-10-18T01:02:59,926   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/converters/OpenMM.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/converters
2025-10-18T01:02:59,928   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/converters/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/converters
2025-10-18T01:02:59,930   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/converters/RDKit.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/converters
2025-10-18T01:02:59,932   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/converters/ParmEd.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/converters
2025-10-18T01:02:59,935   creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/selections
2025-10-18T01:02:59,936   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/selections/gromacs.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/selections
2025-10-18T01:02:59,938   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/selections/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/selections
2025-10-18T01:02:59,940   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/selections/jmol.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/selections
2025-10-18T01:02:59,942   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/selections/pymol.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/selections
2025-10-18T01:02:59,944   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/selections/charmm.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/selections
2025-10-18T01:02:59,945   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/selections/vmd.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/selections
2025-10-18T01:02:59,947   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages
2025-10-18T01:02:59,950   creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/lib
2025-10-18T01:02:59,951   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib/correlations.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib
2025-10-18T01:02:59,953   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib/c_distances_openmp.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib
2025-10-18T01:02:59,955   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib/c_distances.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib
2025-10-18T01:02:59,957   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib/nsgrid.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib
2025-10-18T01:02:59,959   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib/NeighborSearch.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib
2025-10-18T01:02:59,961   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib/distances.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib
2025-10-18T01:02:59,962   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib/pkdtree.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib
2025-10-18T01:02:59,964   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib/util.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib
2025-10-18T01:02:59,967   creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/lib/formats
2025-10-18T01:02:59,968   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib/formats/libmdaxdr.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib/formats
2025-10-18T01:02:59,970   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib/formats/libdcd.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib/formats
2025-10-18T01:02:59,972   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib/transformations.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib
2025-10-18T01:02:59,974   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib/qcprot.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib
2025-10-18T01:02:59,976   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib/log.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib
2025-10-18T01:02:59,978   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib/picklable_file_io.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib
2025-10-18T01:02:59,980   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib/mdamath.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib
2025-10-18T01:02:59,982   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/core_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages
2025-10-18T01:02:59,984   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages
2025-10-18T01:02:59,985   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/version.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages
2025-10-18T01:02:59,987   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/selections.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages
2025-10-18T01:02:59,990   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/lib_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages
2025-10-18T01:02:59,992   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/analysis_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages
2025-10-18T01:02:59,995   creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/auxiliary
2025-10-18T01:02:59,996   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/auxiliary/init.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/auxiliary
2025-10-18T01:02:59,998   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/auxiliary/EDR.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/auxiliary
2025-10-18T01:03:00,000   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/auxiliary/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/auxiliary
2025-10-18T01:03:00,001   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/auxiliary/core.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/auxiliary
2025-10-18T01:03:00,003   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/auxiliary/XVG.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/auxiliary
2025-10-18T01:03:00,005   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/references.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages
2025-10-18T01:03:00,008   creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/guesser_modules
2025-10-18T01:03:00,010   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/guesser_modules/init.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/guesser_modules
2025-10-18T01:03:00,012   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/guesser_modules/tables.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/guesser_modules
2025-10-18T01:03:00,014   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/guesser_modules/default_guesser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/guesser_modules
2025-10-18T01:03:00,016   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/guesser_modules/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/guesser_modules
2025-10-18T01:03:00,019   creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,020   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/init.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,022   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/PQRParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,024   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/MinimalParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,025   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/HoomdXMLParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,027   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/GMSParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,029   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/tables.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,031   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/XYZParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,033   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/MOL2Parser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,034   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/PSFParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,036   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,038   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/FHIAIMSParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,040   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/CRDParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,042   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/DMSParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,044   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/PDBQTParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,046   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/TPRParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,048   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/GSDParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,050   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/ExtendedPDBParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,052   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/GROParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,054   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/DLPolyParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,056   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/core.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,057   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/ITPParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,059   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/PDBParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,061   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/tpr_util.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,063   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/MMTFParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,065   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/guessers.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,067   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/TOPParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,069   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/TXYZParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,070   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/topology/LAMMPSParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology
2025-10-18T01:03:00,072   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/units.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages
2025-10-18T01:03:00,074   copying build/lib.linux-armv7l-cpython-311/doc/sphinx/source/documentation_pages/guesser_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages
2025-10-18T01:03:00,077   creating build/bdist.linux-armv7l/wheel/MDAnalysis
2025-10-18T01:03:00,078   creating build/bdist.linux-armv7l/wheel/MDAnalysis/core
2025-10-18T01:03:00,080   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/universe.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
2025-10-18T01:03:00,084   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/topologyattrs.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
2025-10-18T01:03:00,088   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
2025-10-18T01:03:00,091   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/topology.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
2025-10-18T01:03:00,094   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/accessors.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
2025-10-18T01:03:00,097   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/_get_readers.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
2025-10-18T01:03:00,100   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/groups.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
2025-10-18T01:03:00,105   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/selection.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
2025-10-18T01:03:00,109   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/core/topologyobjects.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core
2025-10-18T01:03:00,112   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/exceptions.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis
2025-10-18T01:03:00,115   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis
2025-10-18T01:03:00,118   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/authors.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis
2025-10-18T01:03:00,121   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2025-10-18T01:03:00,122   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,126   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds
2025-10-18T01:03:00,127   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hbonds/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hbonds
2025-10-18T01:03:00,130   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hbonds
2025-10-18T01:03:00,133   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/psa.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,136   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2025-10-18T01:03:00,137   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/similarity.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
2025-10-18T01:03:00,141   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
2025-10-18T01:03:00,144   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2025-10-18T01:03:00,146   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction
2025-10-18T01:03:00,160   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction
2025-10-18T01:03:00,163   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src
2025-10-18T01:03:00,164   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction/src
2025-10-18T01:03:00,167   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction
2025-10-18T01:03:00,170   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction
2025-10-18T01:03:00,172   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction
2025-10-18T01:03:00,175   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction
2025-10-18T01:03:00,191   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include
2025-10-18T01:03:00,192   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction/include
2025-10-18T01:03:00,195   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/utils.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
2025-10-18T01:03:00,198   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/cutils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
2025-10-18T01:03:00,206   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/cutils.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
2025-10-18T01:03:00,221   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/bootstrap.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
2025-10-18T01:03:00,224   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2025-10-18T01:03:00,226   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering
2025-10-18T01:03:00,228   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering
2025-10-18T01:03:00,242   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/cluster.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering
2025-10-18T01:03:00,246   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/src
2025-10-18T01:03:00,247   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/src/ap.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering/src
2025-10-18T01:03:00,250   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering
2025-10-18T01:03:00,253   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering
2025-10-18T01:03:00,255   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering
2025-10-18T01:03:00,267   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/include
2025-10-18T01:03:00,268   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/include/ap.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering/include
2025-10-18T01:03:00,270   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering
2025-10-18T01:03:00,272   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/covariance.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
2025-10-18T01:03:00,275   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/confdistmatrix.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
2025-10-18T01:03:00,277   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/encore/cutils.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore
2025-10-18T01:03:00,280   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2025-10-18T01:03:00,281   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hydrogenbonds
2025-10-18T01:03:00,284   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hydrogenbonds
2025-10-18T01:03:00,287   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hydrogenbonds
2025-10-18T01:03:00,290   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hydrogenbonds
2025-10-18T01:03:00,294   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,296   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/dihedrals.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,299   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/density.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,302   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/diffusionmap.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,304   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,308   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2025-10-18T01:03:00,309   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data/filenames.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/data
2025-10-18T01:03:00,311   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/data
2025-10-18T01:03:00,313   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data/janin_ref_data.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/data
2025-10-18T01:03:00,315   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/data/rama_ref_data.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/data
2025-10-18T01:03:00,319   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/pca.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,322   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/bat.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,325   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2025-10-18T01:03:00,326   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/hole2/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hole2
2025-10-18T01:03:00,329   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/backends.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,332   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/rms.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,336   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/polymer.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,340   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/results.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,343   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/waterdynamics.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,346   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/nuclinfo.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,350   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/dssp
2025-10-18T01:03:00,351   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/dssp/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/dssp
2025-10-18T01:03:00,354   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/dssp/pydssp_numpy.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/dssp
2025-10-18T01:03:00,357   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/dssp/dssp.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/dssp
2025-10-18T01:03:00,361   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/lineardensity.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,364   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/dielectric.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,367   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/distances.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,371   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/align.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,375   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/gnm.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,379   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/contacts.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,382   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/msd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,386   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/leaflet.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,389   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/helix_analysis.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,393   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy
2025-10-18T01:03:00,395   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/legacy
2025-10-18T01:03:00,398   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/legacy/x3dna.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/legacy
2025-10-18T01:03:00,402   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/atomicdistances.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,406   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/analysis/nucleicacids.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis
2025-10-18T01:03:00,410   creating build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
2025-10-18T01:03:00,412   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/visualization
2025-10-18T01:03:00,415   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization/streamlines.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/visualization
2025-10-18T01:03:00,418   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/visualization/streamlines_3D.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/visualization
2025-10-18T01:03:00,423   creating build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2025-10-18T01:03:00,424   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/positionaveraging.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
2025-10-18T01:03:00,428   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
2025-10-18T01:03:00,431   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/wrap.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
2025-10-18T01:03:00,433   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
2025-10-18T01:03:00,436   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/rotate.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
2025-10-18T01:03:00,438   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/boxdimensions.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
2025-10-18T01:03:00,441   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/nojump.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
2025-10-18T01:03:00,444   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/fit.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
2025-10-18T01:03:00,447   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/transformations/translate.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations
2025-10-18T01:03:00,449   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/version.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis
2025-10-18T01:03:00,452   creating build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2025-10-18T01:03:00,453   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/FHIAIMS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,456   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/memory.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,459   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,462   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/IMD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,464   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.cpp -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,486   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/TRR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,488   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,492   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/TPR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,494   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/GSD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,497   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/ParmEd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,499   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/NAMDBIN.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,501   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/DMS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,504   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,506   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/TRZ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,509   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/PQR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,512   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/LAMMPS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,515   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/CRD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,517   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,520   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/chain.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,523   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/MOL2.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,526   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/core.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,528   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/DCD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,531   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/GMS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,533   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/TRC.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,536   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/INPCRD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,538   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/XDR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,541   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/PDB.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,544   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/PDBQT.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,547   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/TXYZ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,549   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/DLPoly.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,552   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/timestep.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,573   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/XYZ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,576   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/null.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,578   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/MMTF.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,580   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/TRJ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,583   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/XTC.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,586   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/H5MD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,589   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/TNG.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,592   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/chemfiles.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,594   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/coordinates/GRO.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates
2025-10-18T01:03:00,598   creating build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2025-10-18T01:03:00,599   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
2025-10-18T01:03:00,601   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
2025-10-18T01:03:00,603   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/OpenMM.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
2025-10-18T01:03:00,606   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/ParmEd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
2025-10-18T01:03:00,609   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/RDKit.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
2025-10-18T01:03:00,612   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/RDKitParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
2025-10-18T01:03:00,614   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/OpenMMParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
2025-10-18T01:03:00,617   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
2025-10-18T01:03:00,620   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/converters/RDKitInferring.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters
2025-10-18T01:03:00,623   creating build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2025-10-18T01:03:00,624   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/charmm.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
2025-10-18T01:03:00,626   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
2025-10-18T01:03:00,629   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
2025-10-18T01:03:00,631   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/jmol.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
2025-10-18T01:03:00,633   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/gromacs.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
2025-10-18T01:03:00,635   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/pymol.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
2025-10-18T01:03:00,637   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/selections/vmd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections
2025-10-18T01:03:00,639   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/due.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis
2025-10-18T01:03:00,642   creating build/bdist.linux-armv7l/wheel/MDAnalysis/tests
2025-10-18T01:03:00,643   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/tests
2025-10-18T01:03:00,645   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/tests/datafiles.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/tests
2025-10-18T01:03:00,648   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2025-10-18T01:03:00,649   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/qcprot.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,674   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_augment.cpp -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,694   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_augment.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,697   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/util.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,700   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,702   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_augment.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,730   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_transformations.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,737   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/NeighborSearch.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,739   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/transformations.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,743   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/libmdanalysis
2025-10-18T01:03:00,744   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/libmdanalysis/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/libmdanalysis
2025-10-18T01:03:00,746   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/libmdanalysis
2025-10-18T01:03:00,748   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,751   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/qcprot.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,780   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src
2025-10-18T01:03:00,782   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations
2025-10-18T01:03:00,783   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/src/transformations
2025-10-18T01:03:00,785   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations/AUTHOR -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/src/transformations
2025-10-18T01:03:00,787   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations/LICENCE -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/src/transformations
2025-10-18T01:03:00,788   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/src/transformations/transformations.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/src/transformations
2025-10-18T01:03:00,793   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances_openmp.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,803   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,833   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,835   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/nsgrid.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,838   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/qcprot.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,841   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,844   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,893   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_distopia.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,895   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,897   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/picklable_file_io.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:00,900   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2025-10-18T01:03:00,901   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
2025-10-18T01:03:00,920   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
2025-10-18T01:03:00,922   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
2025-10-18T01:03:00,924   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
2025-10-18T01:03:00,927   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
2025-10-18T01:03:00,953   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
2025-10-18T01:03:00,987   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
2025-10-18T01:03:00,989   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
2025-10-18T01:03:00,992   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
2025-10-18T01:03:01,027   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2025-10-18T01:03:01,028   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src
2025-10-18T01:03:01,030   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xtc_seek.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src
2025-10-18T01:03:01,033   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src
2025-10-18T01:03:01,036   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src
2025-10-18T01:03:01,039   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src
2025-10-18T01:03:01,041   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/src/trr_seek.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src
2025-10-18T01:03:01,043   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libdcd.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
2025-10-18T01:03:01,046   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
2025-10-18T01:03:01,048   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/libmdaxdr.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
2025-10-18T01:03:01,121   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/cython_util.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats
2025-10-18T01:03:01,165   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2025-10-18T01:03:01,166   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/readdcd.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
2025-10-18T01:03:01,169   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
2025-10-18T01:03:01,171   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/xtc_seek.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
2025-10-18T01:03:01,172   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/trr_seek.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
2025-10-18T01:03:01,174   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
2025-10-18T01:03:01,177   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
2025-10-18T01:03:01,179   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/endianswap.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
2025-10-18T01:03:01,181   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/fastio.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
2025-10-18T01:03:01,184   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include
2025-10-18T01:03:01,186   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances_openmp.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:01,188   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/distances.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:01,192   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/correlations.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:01,195   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/nsgrid.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:01,270   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/pkdtree.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:01,273   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:01,317   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/mdamath.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:01,320   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/log.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:01,323   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/include
2025-10-18T01:03:01,324   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/include/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/include
2025-10-18T01:03:01,326   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/include/calc_distances.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/include
2025-10-18T01:03:01,328   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/c_distances_openmp.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:01,351   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/nsgrid.cpp -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:01,397   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/lib/_cutil.cpp -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib
2025-10-18T01:03:01,454   creating build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2025-10-18T01:03:01,456   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary
2025-10-18T01:03:01,458   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary
2025-10-18T01:03:01,461   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary/core.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary
2025-10-18T01:03:01,464   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary/XVG.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary
2025-10-18T01:03:01,466   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/auxiliary/EDR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary
2025-10-18T01:03:01,469   creating build/bdist.linux-armv7l/wheel/MDAnalysis/guesser
2025-10-18T01:03:01,470   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/guesser/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/guesser
2025-10-18T01:03:01,472   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/guesser/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/guesser
2025-10-18T01:03:01,475   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/guesser/tables.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/guesser
2025-10-18T01:03:01,477   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/guesser/default_guesser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/guesser
2025-10-18T01:03:01,480   creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2025-10-18T01:03:01,482   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/PDBParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,485   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,487   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/PQRParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,490   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,492   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/DMSParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,495   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/GROParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,498   creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2025-10-18T01:03:01,499   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr
2025-10-18T01:03:01,501   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr/utils.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr
2025-10-18T01:03:01,504   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr/obj.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr
2025-10-18T01:03:01,506   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tpr/setting.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr
2025-10-18T01:03:01,509   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/DLPolyParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,511   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/PSFParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,514   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,516   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/core.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,518   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/guessers.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,520   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/MinimalParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,522   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/TPRParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,525   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/tables.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,527   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/CRDParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,529   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/LAMMPSParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,532   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/ITPParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,535   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/GMSParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,537   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/ExtendedPDBParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,542   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/PDBQTParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,545   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/GSDParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,547   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/FHIAIMSParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,549   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/MMTFParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,554   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/XYZParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,556   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/TXYZParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,559   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/MOL2Parser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,563   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/HoomdXMLParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,567   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/topology/TOPParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology
2025-10-18T01:03:01,572   copying build/lib.linux-armv7l-cpython-311/MDAnalysis/units.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis
2025-10-18T01:03:01,576   running install_egg_info
2025-10-18T01:03:01,583   Copying MDAnalysis.egg-info to build/bdist.linux-armv7l/wheel/./MDAnalysis-2.10.0-py3.11.egg-info
2025-10-18T01:03:01,608   running install_scripts
2025-10-18T01:03:01,669   error: [Errno 39] Directory not empty: 'build/bdist.linux-armv7l/wheel/./MDAnalysis-2.10.0-py3.11.egg-info'
2025-10-18T01:03:01,860   ERROR: [present-rich] Building wheel for mdanalysis (pyproject.toml) exited with 1
2025-10-18T01:03:01,874   [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmp4gvqithf[/]
2025-10-18T01:03:01,874   [bold magenta]cwd[/]: /tmp/pip-wheel-zeul4lqk/mdanalysis_a9c8f194387648f48c4e1888716d87e6
2025-10-18T01:03:01,875   Building wheel for mdanalysis (pyproject.toml): finished with status 'error'
2025-10-18T01:03:01,877   ERROR: Failed building wheel for mdanalysis
2025-10-18T01:03:01,879 Failed to build mdanalysis
2025-10-18T01:03:01,881 ERROR: Failed to build one or more wheels
2025-10-18T01:03:01,882 Exception information:
2025-10-18T01:03:01,882 Traceback (most recent call last):
2025-10-18T01:03:01,882   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper
2025-10-18T01:03:01,882     status = run_func(*args)
2025-10-18T01:03:01,882              ^^^^^^^^^^^^^^^
2025-10-18T01:03:01,882   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper
2025-10-18T01:03:01,882     return func(self, options, args)
2025-10-18T01:03:01,882            ^^^^^^^^^^^^^^^^^^^^^^^^^
2025-10-18T01:03:01,882   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 201, in run
2025-10-18T01:03:01,882     raise CommandError("Failed to build one or more wheels")
2025-10-18T01:03:01,882 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2025-10-18T01:03:01,886 Removed build tracker: '/tmp/pip-build-tracker-g3phjpg0'