2025-10-18T09:07:33,792 Created temporary directory: /tmp/pip-build-tracker-qvsnacbm 2025-10-18T09:07:33,793 Initialized build tracking at /tmp/pip-build-tracker-qvsnacbm 2025-10-18T09:07:33,793 Created build tracker: /tmp/pip-build-tracker-qvsnacbm 2025-10-18T09:07:33,793 Entered build tracker: /tmp/pip-build-tracker-qvsnacbm 2025-10-18T09:07:33,794 Created temporary directory: /tmp/pip-wheel-qxt1zuhb 2025-10-18T09:07:33,797 Created temporary directory: /tmp/pip-ephem-wheel-cache-ncsz1zo0 2025-10-18T09:07:33,860 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-18T09:07:33,863 2 location(s) to search for versions of pyabpoa: 2025-10-18T09:07:33,863 * https://pypi.org/simple/pyabpoa/ 2025-10-18T09:07:33,863 * https://www.piwheels.org/simple/pyabpoa/ 2025-10-18T09:07:33,863 Fetching project page and analyzing links: https://pypi.org/simple/pyabpoa/ 2025-10-18T09:07:33,863 Getting page https://pypi.org/simple/pyabpoa/ 2025-10-18T09:07:33,864 Found index url https://pypi.org/simple/ 2025-10-18T09:07:34,013 Fetched page https://pypi.org/simple/pyabpoa/ as application/vnd.pypi.simple.v1+json 2025-10-18T09:07:34,023 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/37/99/227ea2b72b95963bba96ce1af45e69237cc461565b8340ed9e9f50f860fa/pyabpoa-1.0.0a0-py3.7-linux-x86_64.egg (from https://pypi.org/simple/pyabpoa/) 2025-10-18T09:07:34,024 Found link https://files.pythonhosted.org/packages/9b/e7/df899a1ada9f1edb696a1b0675899af31c693bf264338c8350951d1b5ecf/pyabpoa-1.0.0a0.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.0.0a0 2025-10-18T09:07:34,024 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8d/d9/f1df88331ba08eca856b698042f418e70e39105e6fb270670ad095a41314/pyabpoa-1.0.0a1-py3.7-linux-x86_64.egg (from https://pypi.org/simple/pyabpoa/) 2025-10-18T09:07:34,024 Found link https://files.pythonhosted.org/packages/9c/73/7cb26c4dc084163347572ce072bc3377aeeaeba7cbe57ce1c0edafaa0b63/pyabpoa-1.0.0a1.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.0.0a1 2025-10-18T09:07:34,025 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/53/6d/ecab4272381ff5e04af6b13e340705da47de2bf0d0b6319f17be0ced29b4/pyabpoa-1.0.1a0-py3.7-linux-x86_64.egg (from https://pypi.org/simple/pyabpoa/) 2025-10-18T09:07:34,025 Found link https://files.pythonhosted.org/packages/81/23/6230947311aebe386ffa9b231781df37b5ab762814c8c07ecc4690724527/pyabpoa-1.0.1a0.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.0.1a0 2025-10-18T09:07:34,025 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/7f/c6/6efa63e7325c331611b33bfab7ff9efd5b25c7753755208d5afca3bbbc24/pyabpoa-1.0.2-py3.7-linux-x86_64.egg (from https://pypi.org/simple/pyabpoa/) 2025-10-18T09:07:34,025 Found link https://files.pythonhosted.org/packages/85/82/30a82619ba875c5500d242986597e0011fefccaa4d25ec4d2e975cab57e2/pyabpoa-1.0.2.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.0.2 2025-10-18T09:07:34,025 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/da/9f/873db100e25fb12eff0ba45cce4d6cc57b395b350a9933c391ad8fb359e0/pyabpoa-1.0.3-py3.7-linux-x86_64.egg (from https://pypi.org/simple/pyabpoa/) 2025-10-18T09:07:34,026 Found link https://files.pythonhosted.org/packages/bb/c9/7d2a071a2c78134bff40f637fa3da72d4dfd585abf2fe6dafc6d5f38c130/pyabpoa-1.0.3.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.0.3 2025-10-18T09:07:34,026 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/2a/bc/a454ecde68e63b55d6caaed79e974d725e7e65458d2743006934461a9e67/pyabpoa-1.0.4-py3.7-linux-x86_64.egg (from https://pypi.org/simple/pyabpoa/) 2025-10-18T09:07:34,026 Found link https://files.pythonhosted.org/packages/09/bc/b7298c521e555eb05525f2bdfbece41fe83850babd11b6414a5889485ac5/pyabpoa-1.0.4.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.0.4 2025-10-18T09:07:34,026 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f3/05/9e31e895a6a89b72583fd70dd3a46a83a5caf9289e8bc162c279c934792c/pyabpoa-1.0.5-py3.7-linux-x86_64.egg (from https://pypi.org/simple/pyabpoa/) 2025-10-18T09:07:34,027 Found link https://files.pythonhosted.org/packages/44/0c/0b0c544f6751ea9c2f38e267b8442a28ddd5c9f00c33035fb00d2f612d7b/pyabpoa-1.0.5.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.0.5 2025-10-18T09:07:34,027 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/9f/46/c0d10e59c49ba4866b836da6c7d07c3789b83d8cd41b13e52653094be5f5/pyabpoa-1.0.6-py3.8-linux-x86_64.egg (from https://pypi.org/simple/pyabpoa/) 2025-10-18T09:07:34,027 Found link https://files.pythonhosted.org/packages/4c/9a/3f08afb2d755a494e8fc4f354a8c2915428e3b3b6ceb71be8422f96ee83b/pyabpoa-1.0.6.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.0.6 2025-10-18T09:07:34,027 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/4b/d5/cb28d8a37509ee4d87ce310c70a965dd1bdc6d093a1e6dd25f760a60ffb0/pyabpoa-1.1.4-py3.8-linux-x86_64.egg (from https://pypi.org/simple/pyabpoa/) 2025-10-18T09:07:34,027 Found link https://files.pythonhosted.org/packages/0f/44/c1a893c6c74e4de8e4bedef0d5698ed0977601f0ebc3bf05a9b01f45afee/pyabpoa-1.1.4.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.1.4 2025-10-18T09:07:34,028 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/4c/5b/599b2d35000f101af5e626239a4b3cc4f4a95953720b89523e3ddf5813ed/pyabpoa-1.2.0-py3.8-linux-x86_64.egg (from https://pypi.org/simple/pyabpoa/) 2025-10-18T09:07:34,028 Found link https://files.pythonhosted.org/packages/83/8d/a8d15ebb880264706aa37119c8a69badb251f6e772d89581f4a4c2595279/pyabpoa-1.2.0.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.2.0 2025-10-18T09:07:34,028 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/9e/aa/98b0c7ac7285dd7c1dac289df0c8c13fa89572f03e1224caf60fccbc8704/pyabpoa-1.2.1-py3.8-linux-x86_64.egg (from https://pypi.org/simple/pyabpoa/) 2025-10-18T09:07:34,028 Found link https://files.pythonhosted.org/packages/3c/3f/4653af9ad5fe4967a9750e8f426fa5978d2932939dfe9f21e494189f6dd5/pyabpoa-1.2.1.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.2.1 2025-10-18T09:07:34,028 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/3e/6e/bbe955a90b5b861355388ae2d0dd0037b9f5f7a5c04b9c8458c886b50d36/pyabpoa-1.2.3-py3.8-linux-x86_64.egg (from https://pypi.org/simple/pyabpoa/) 2025-10-18T09:07:34,029 Found link https://files.pythonhosted.org/packages/32/33/605170870d6773d6bbfb138463ef8789dc9a9decdeab7b3e27d1261c82c5/pyabpoa-1.2.3.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.2.3 2025-10-18T09:07:34,029 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/18/d5/510e8e5ebb6281d6b6ada2ae2ec3397705b02c30622cb55d705d42d513a7/pyabpoa-1.2.4-py3.8-linux-x86_64.egg (from https://pypi.org/simple/pyabpoa/) 2025-10-18T09:07:34,029 Found link https://files.pythonhosted.org/packages/31/a7/da375b95c91701742185eb9de82d0b1c0ab5615ae82de3bbd559fb84e5c2/pyabpoa-1.2.4.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.2.4 2025-10-18T09:07:34,029 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8f/56/4a23a8e27b413379c79b03b87e29ee2c819ddd993061b2d46ac7f9e56ad4/pyabpoa-1.2.5-py3.8-linux-x86_64.egg (from https://pypi.org/simple/pyabpoa/) 2025-10-18T09:07:34,030 Found link https://files.pythonhosted.org/packages/e7/f9/bcd464f984b0558cc8789994963097808c18d7164fb32ea3ae1bfb4a2ec2/pyabpoa-1.2.5.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.2.5 2025-10-18T09:07:34,030 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/a6/aa/425994169c5610f7b448e10a8de6eb9a0eb5bd7b75f349720aadfff3ed3e/pyabpoa-1.3.0.0-py3.9-linux-x86_64.egg (from https://pypi.org/simple/pyabpoa/) 2025-10-18T09:07:34,030 Found link https://files.pythonhosted.org/packages/43/4a/babb13dcd568d4a59115442df06c96e6cd4d812f8a26f3b48b50943e9ebb/pyabpoa-1.3.0.0.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.3.0.0 2025-10-18T09:07:34,030 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/2b/2a/50938002d2ff97fb48bc024e3c8b9f70b36d63aa8ea5c4e7cb1b1425c1c5/pyabpoa-1.4.0-py3.7-linux-x86_64.egg (from https://pypi.org/simple/pyabpoa/) 2025-10-18T09:07:34,030 Found link https://files.pythonhosted.org/packages/1a/1f/7e3d26093c0078486a9daffc06aba01ebd8fd67058ede1d6c993d6ee77b7/pyabpoa-1.4.0.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.4.0 2025-10-18T09:07:34,031 Found link https://files.pythonhosted.org/packages/8b/44/8336e4e3d628894497e7b739d1b085cd25f580da6e1433f60e2a36dc95f9/pyabpoa-1.4.2.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.4.2 2025-10-18T09:07:34,031 Found link https://files.pythonhosted.org/packages/b0/44/067f31d86cdaf6d6725d3c04fd2ec67fe21bcad1f3ea582df8c176aca80a/pyabpoa-1.4.3.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.4.3 2025-10-18T09:07:34,031 Found link https://files.pythonhosted.org/packages/87/b2/fa387ef2aef26d24e9b68eadf6c1ec35206c6150b257f8fa2d30056b137a/pyabpoa-1.5.0.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.5.0 2025-10-18T09:07:34,031 Found link https://files.pythonhosted.org/packages/af/a8/b3207f263322610398bdda967a74193886f43c5b352a58c80828aae8a717/pyabpoa-1.5.1.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.5.1 2025-10-18T09:07:34,032 Skipping link: No binaries permitted for pyabpoa: https://files.pythonhosted.org/packages/21/f5/99cc8ba67d700c82684047c79ec039ae60cf6b49d7b58b4da2ba19673450/pyabpoa-1.5.2-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/pyabpoa/) 2025-10-18T09:07:34,032 Skipping link: No binaries permitted for pyabpoa: https://files.pythonhosted.org/packages/63/e8/ccf34f80da624eeabb8857076cc0146fe74df601e83f700cdfe4f785208a/pyabpoa-1.5.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyabpoa/) 2025-10-18T09:07:34,032 Found link https://files.pythonhosted.org/packages/5d/72/e17b737bb59f4971804267031a1c7a66da808580ea27d4fc5337b3f890f2/pyabpoa-1.5.2.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.5.2 2025-10-18T09:07:34,032 Found link https://files.pythonhosted.org/packages/6e/b8/2ec2e44c82b8011e4179b1da91748d232789a3f8a8b7b8bec1d61c39cac3/pyabpoa-1.5.3.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.5.3 2025-10-18T09:07:34,032 Found link https://files.pythonhosted.org/packages/74/69/556400abfbab5e2687ebb247ce80bf4b1b34af6d90a86f69805d1c7f378c/pyabpoa-1.5.4.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.5.4 2025-10-18T09:07:34,033 Found link https://files.pythonhosted.org/packages/bf/05/22efbf00113490044342d0a5ae0332a9b91f2a7220f8c734e7595956a60a/pyabpoa-1.5.5.tar.gz (from https://pypi.org/simple/pyabpoa/), version: 1.5.5 2025-10-18T09:07:34,033 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyabpoa/ 2025-10-18T09:07:34,033 Getting page https://www.piwheels.org/simple/pyabpoa/ 2025-10-18T09:07:34,034 Found index url https://www.piwheels.org/simple/ 2025-10-18T09:07:34,133 Fetched page https://www.piwheels.org/simple/pyabpoa/ as text/html 2025-10-18T09:07:34,134 Skipping link: not a file: https://www.piwheels.org/simple/pyabpoa/ 2025-10-18T09:07:34,134 Skipping link: not a file: https://pypi.org/simple/pyabpoa/ 2025-10-18T09:07:34,163 Given no hashes to check 1 links for project 'pyabpoa': discarding no candidates 2025-10-18T09:07:34,164 Collecting pyabpoa==1.4.3 2025-10-18T09:07:34,165 Created temporary directory: /tmp/pip-unpack-zot5u8at 2025-10-18T09:07:34,307 Downloading pyabpoa-1.4.3.tar.gz (689 kB) 2025-10-18T09:07:34,778 Added pyabpoa==1.4.3 from https://files.pythonhosted.org/packages/b0/44/067f31d86cdaf6d6725d3c04fd2ec67fe21bcad1f3ea582df8c176aca80a/pyabpoa-1.4.3.tar.gz to build tracker '/tmp/pip-build-tracker-qvsnacbm' 2025-10-18T09:07:34,780 Running setup.py (path:/tmp/pip-wheel-qxt1zuhb/pyabpoa_d56099030a6149199fc585c56a97a313/setup.py) egg_info for package pyabpoa 2025-10-18T09:07:34,780 Created temporary directory: /tmp/pip-pip-egg-info-3bsu0dir 2025-10-18T09:07:34,780 Preparing metadata (setup.py): started 2025-10-18T09:07:34,781 Running command python setup.py egg_info 2025-10-18T09:07:35,511 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-10-18T09:07:35,512 !! 2025-10-18T09:07:35,512 ******************************************************************************** 2025-10-18T09:07:35,512 Requirements should be satisfied by a PEP 517 installer. 2025-10-18T09:07:35,512 If you are using pip, you can try `pip install --use-pep517`. 2025-10-18T09:07:35,512 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-10-18T09:07:35,512 or your builds will no longer be supported. 2025-10-18T09:07:35,512 ******************************************************************************** 2025-10-18T09:07:35,513 !! 2025-10-18T09:07:35,513 dist.fetch_build_eggs(dist.setup_requires) 2025-10-18T09:07:36,055 running egg_info 2025-10-18T09:07:36,130 creating /tmp/pip-pip-egg-info-3bsu0dir/pyabpoa.egg-info 2025-10-18T09:07:36,131 writing /tmp/pip-pip-egg-info-3bsu0dir/pyabpoa.egg-info/PKG-INFO 2025-10-18T09:07:36,132 writing dependency_links to /tmp/pip-pip-egg-info-3bsu0dir/pyabpoa.egg-info/dependency_links.txt 2025-10-18T09:07:36,133 writing top-level names to /tmp/pip-pip-egg-info-3bsu0dir/pyabpoa.egg-info/top_level.txt 2025-10-18T09:07:36,133 writing manifest file '/tmp/pip-pip-egg-info-3bsu0dir/pyabpoa.egg-info/SOURCES.txt' 2025-10-18T09:07:36,358 reading manifest file '/tmp/pip-pip-egg-info-3bsu0dir/pyabpoa.egg-info/SOURCES.txt' 2025-10-18T09:07:36,358 reading manifest template 'MANIFEST.in' 2025-10-18T09:07:36,389 warning: no files found matching 'python/pyabpoa.c' 2025-10-18T09:07:36,389 adding license file 'LICENSE' 2025-10-18T09:07:36,402 writing manifest file '/tmp/pip-pip-egg-info-3bsu0dir/pyabpoa.egg-info/SOURCES.txt' 2025-10-18T09:07:36,513 Preparing metadata (setup.py): finished with status 'done' 2025-10-18T09:07:36,518 Source in /tmp/pip-wheel-qxt1zuhb/pyabpoa_d56099030a6149199fc585c56a97a313 has version 1.4.3, which satisfies requirement pyabpoa==1.4.3 from https://files.pythonhosted.org/packages/b0/44/067f31d86cdaf6d6725d3c04fd2ec67fe21bcad1f3ea582df8c176aca80a/pyabpoa-1.4.3.tar.gz 2025-10-18T09:07:36,518 Removed pyabpoa==1.4.3 from https://files.pythonhosted.org/packages/b0/44/067f31d86cdaf6d6725d3c04fd2ec67fe21bcad1f3ea582df8c176aca80a/pyabpoa-1.4.3.tar.gz from build tracker '/tmp/pip-build-tracker-qvsnacbm' 2025-10-18T09:07:36,522 Created temporary directory: /tmp/pip-unpack-n8wdc9we 2025-10-18T09:07:36,522 Created temporary directory: /tmp/pip-unpack-g5348h6y 2025-10-18T09:07:36,522 Building wheels for collected packages: pyabpoa 2025-10-18T09:07:36,524 Created temporary directory: /tmp/pip-wheel-ukjqvwgo 2025-10-18T09:07:36,524 DEPRECATION: Building 'pyabpoa' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pyabpoa'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-10-18T09:07:36,526 Building wheel for pyabpoa (setup.py): started 2025-10-18T09:07:36,526 Destination directory: /tmp/pip-wheel-ukjqvwgo 2025-10-18T09:07:36,527 Running command python setup.py bdist_wheel 2025-10-18T09:07:37,182 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-10-18T09:07:37,182 !! 2025-10-18T09:07:37,183 ******************************************************************************** 2025-10-18T09:07:37,183 Requirements should be satisfied by a PEP 517 installer. 2025-10-18T09:07:37,183 If you are using pip, you can try `pip install --use-pep517`. 2025-10-18T09:07:37,183 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-10-18T09:07:37,183 or your builds will no longer be supported. 2025-10-18T09:07:37,183 ******************************************************************************** 2025-10-18T09:07:37,183 !! 2025-10-18T09:07:37,183 dist.fetch_build_eggs(dist.setup_requires) 2025-10-18T09:07:37,650 running bdist_wheel 2025-10-18T09:07:38,028 running build 2025-10-18T09:07:38,028 running build_ext 2025-10-18T09:07:38,452 Compiling python/pyabpoa.pyx because it changed. 2025-10-18T09:07:38,452 [1/1] Cythonizing python/pyabpoa.pyx 2025-10-18T09:07:40,544 building 'pyabpoa' extension 2025-10-18T09:07:40,547 creating build/temp.linux-armv7l-cpython-313/python 2025-10-18T09:07:40,547 creating build/temp.linux-armv7l-cpython-313/src 2025-10-18T09:07:40,549 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Iinclude/ -I/usr/include/python3.13 -c python/pyabpoa.c -o build/temp.linux-armv7l-cpython-313/python/pyabpoa.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -march=native 2025-10-18T09:07:41,441 In file included from python/pyabpoa.c:1184: 2025-10-18T09:07:41,441 include/simd_instruction.h: In function ‘SIMDMalloc’: 2025-10-18T09:07:41,443 include/simd_instruction.h:623:61: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-10-18T09:07:41,443 623 | fprintf(stderr, "[%s] posix_memalign fail!\nSize: %ld, Error: %s\n", __func__, size, error); 2025-10-18T09:07:41,443 | ~~^ ~~~~ 2025-10-18T09:07:41,443 | | | 2025-10-18T09:07:41,443 | long int size_t {aka unsigned int} 2025-10-18T09:07:41,443 | %d 2025-10-18T09:07:58,169 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/abpoa_align.c -o build/temp.linux-armv7l-cpython-313/src/abpoa_align.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -march=native 2025-10-18T09:07:58,833 In file included from src/abpoa.h:5, 2025-10-18T09:07:58,834 from src/abpoa_align.c:4: 2025-10-18T09:07:58,834 src/simd_instruction.h: In function ‘SIMDMalloc’: 2025-10-18T09:07:58,835 src/simd_instruction.h:623:61: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-10-18T09:07:58,836 623 | fprintf(stderr, "[%s] posix_memalign fail!\nSize: %ld, Error: %s\n", __func__, size, error); 2025-10-18T09:07:58,836 | ~~^ ~~~~ 2025-10-18T09:07:58,836 | | | 2025-10-18T09:07:58,836 | long int size_t {aka unsigned int} 2025-10-18T09:07:58,836 | %d 2025-10-18T09:07:58,867 In file included from src/abpoa_align.c:6: 2025-10-18T09:07:58,867 src/abpoa_align.h: In function ‘abpoa_push_cigar’: 2025-10-18T09:07:58,868 src/abpoa_align.h:56:103: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2025-10-18T09:07:58,868 56 | if (*n_cigar == 0 || (op != ABPOA_CINS && op != ABPOA_CSOFT_CLIP && op != ABPOA_CHARD_CLIP) || op != (cigar[(*n_cigar)-1] & 0xf)) { 2025-10-18T09:07:58,868 | ^~ 2025-10-18T09:07:58,892 src/abpoa_align.c: In function ‘abpoa_msa’: 2025-10-18T09:07:58,892 src/abpoa_align.c:435:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2025-10-18T09:07:58,892 435 | for (i = 0; i < n_seq; ++i) free(weights[i]); free(weights); 2025-10-18T09:07:58,893 | ^~~ 2025-10-18T09:07:58,893 src/abpoa_align.c:435:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2025-10-18T09:07:58,893 435 | for (i = 0; i < n_seq; ++i) free(weights[i]); free(weights); 2025-10-18T09:07:58,893 | ^~~~ 2025-10-18T09:08:00,845 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Iinclude/ -I/usr/include/python3.13 -c src/abpoa_graph.c -o build/temp.linux-armv7l-cpython-313/src/abpoa_graph.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -march=native 2025-10-18T09:08:01,517 In file included from src/abpoa.h:5, 2025-10-18T09:08:01,517 from src/abpoa_align.h:4, 2025-10-18T09:08:01,517 from src/abpoa_graph.c:4: 2025-10-18T09:08:01,517 src/simd_instruction.h: In function ‘SIMDMalloc’: 2025-10-18T09:08:01,518 src/simd_instruction.h:623:61: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-10-18T09:08:01,519 623 | fprintf(stderr, "[%s] posix_memalign fail!\nSize: %ld, Error: %s\n", __func__, size, error); 2025-10-18T09:08:01,519 | ~~^ ~~~~ 2025-10-18T09:08:01,519 | | | 2025-10-18T09:08:01,519 | long int size_t {aka unsigned int} 2025-10-18T09:08:01,519 | %d 2025-10-18T09:08:01,545 src/abpoa_align.h: In function ‘abpoa_push_cigar’: 2025-10-18T09:08:01,545 src/abpoa_align.h:56:103: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2025-10-18T09:08:01,545 56 | if (*n_cigar == 0 || (op != ABPOA_CINS && op != ABPOA_CSOFT_CLIP && op != ABPOA_CHARD_CLIP) || op != (cigar[(*n_cigar)-1] & 0xf)) { 2025-10-18T09:08:01,545 | ^~ 2025-10-18T09:08:01,555 In file included from src/abpoa_graph.c:7: 2025-10-18T09:08:01,555 src/abpoa_graph.c: At top level: 2025-10-18T09:08:01,555 src/kdq.h:9:24: error: width of ‘front’ exceeds its type 2025-10-18T09:08:01,555 9 | size_t front:58, bits:6, count, mask; \ 2025-10-18T09:08:01,556 | ^~~~~ 2025-10-18T09:08:01,556 src/kdq.h:93:9: note: in expansion of macro ‘__KDQ_TYPE’ 2025-10-18T09:08:01,556 93 | __KDQ_TYPE(type) \ 2025-10-18T09:08:01,556 | ^~~~~~~~~~ 2025-10-18T09:08:01,556 src/kdq.h:104:24: note: in expansion of macro ‘KDQ_INIT2’ 2025-10-18T09:08:01,556 104 | #define KDQ_INIT(type) KDQ_INIT2(type, static inline klib_unused) 2025-10-18T09:08:01,556 | ^~~~~~~~~ 2025-10-18T09:08:01,556 src/abpoa_graph.c:9:1: note: in expansion of macro ‘KDQ_INIT’ 2025-10-18T09:08:01,556 9 | KDQ_INIT(int) 2025-10-18T09:08:01,556 | ^~~~~~~~ 2025-10-18T09:08:01,563 src/abpoa_graph.c: In function ‘abpoa_free_cons’: 2025-10-18T09:08:01,563 src/abpoa_graph.c:145:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2025-10-18T09:08:01,564 145 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_node_ids[i]); free(abc->cons_node_ids); 2025-10-18T09:08:01,564 | ^~~ 2025-10-18T09:08:01,564 src/abpoa_graph.c:145:76: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2025-10-18T09:08:01,564 145 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_node_ids[i]); free(abc->cons_node_ids); 2025-10-18T09:08:01,564 | ^~~~ 2025-10-18T09:08:01,564 src/abpoa_graph.c:148:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2025-10-18T09:08:01,564 148 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_base[i]); free(abc->cons_base); 2025-10-18T09:08:01,564 | ^~~ 2025-10-18T09:08:01,564 src/abpoa_graph.c:148:72: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2025-10-18T09:08:01,564 148 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_base[i]); free(abc->cons_base); 2025-10-18T09:08:01,565 | ^~~~ 2025-10-18T09:08:01,565 src/abpoa_graph.c:151:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2025-10-18T09:08:01,565 151 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_cov[i]); free(abc->cons_cov); 2025-10-18T09:08:01,565 | ^~~ 2025-10-18T09:08:01,565 src/abpoa_graph.c:151:71: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2025-10-18T09:08:01,565 151 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_cov[i]); free(abc->cons_cov); 2025-10-18T09:08:01,565 | ^~~~ 2025-10-18T09:08:01,565 src/abpoa_graph.c:154:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2025-10-18T09:08:01,565 154 | for (i = 0; i < abc->n_cons; ++i) free(abc->clu_read_ids[i]); free(abc->clu_read_ids); 2025-10-18T09:08:01,565 | ^~~ 2025-10-18T09:08:01,566 src/abpoa_graph.c:154:75: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2025-10-18T09:08:01,566 154 | for (i = 0; i < abc->n_cons; ++i) free(abc->clu_read_ids[i]); free(abc->clu_read_ids); 2025-10-18T09:08:01,566 | ^~~~ 2025-10-18T09:08:01,566 src/abpoa_graph.c:157:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2025-10-18T09:08:01,566 157 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_phred_score[i]); free(abc->cons_phred_score); 2025-10-18T09:08:01,566 | ^~~ 2025-10-18T09:08:01,566 src/abpoa_graph.c:157:79: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2025-10-18T09:08:01,566 157 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_phred_score[i]); free(abc->cons_phred_score); 2025-10-18T09:08:01,566 | ^~~~ 2025-10-18T09:08:01,583 src/abpoa_graph.c: In function ‘abpoa_reset’: 2025-10-18T09:08:01,584 src/abpoa_graph.c:721:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2025-10-18T09:08:01,584 721 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_node_ids[i]); free(abc->cons_node_ids); 2025-10-18T09:08:01,584 | ^~~ 2025-10-18T09:08:01,585 src/abpoa_graph.c:721:76: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2025-10-18T09:08:01,585 721 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_node_ids[i]); free(abc->cons_node_ids); 2025-10-18T09:08:01,585 | ^~~~ 2025-10-18T09:08:01,586 src/abpoa_graph.c:724:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2025-10-18T09:08:01,586 724 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_base[i]); free(abc->cons_base); 2025-10-18T09:08:01,586 | ^~~ 2025-10-18T09:08:01,587 src/abpoa_graph.c:724:72: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2025-10-18T09:08:01,587 724 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_base[i]); free(abc->cons_base); 2025-10-18T09:08:01,587 | ^~~~ 2025-10-18T09:08:01,588 src/abpoa_graph.c:727:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2025-10-18T09:08:01,588 727 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_cov[i]); free(abc->cons_cov); 2025-10-18T09:08:01,588 | ^~~ 2025-10-18T09:08:01,589 src/abpoa_graph.c:727:71: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2025-10-18T09:08:01,589 727 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_cov[i]); free(abc->cons_cov); 2025-10-18T09:08:01,589 | ^~~~ 2025-10-18T09:08:01,590 src/abpoa_graph.c:730:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2025-10-18T09:08:01,590 730 | for (i = 0; i < abc->n_cons; ++i) free(abc->clu_read_ids[i]); free(abc->clu_read_ids); 2025-10-18T09:08:01,590 | ^~~ 2025-10-18T09:08:01,591 src/abpoa_graph.c:730:75: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2025-10-18T09:08:01,591 730 | for (i = 0; i < abc->n_cons; ++i) free(abc->clu_read_ids[i]); free(abc->clu_read_ids); 2025-10-18T09:08:01,591 | ^~~~ 2025-10-18T09:08:01,592 src/abpoa_graph.c:733:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2025-10-18T09:08:01,592 733 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_phred_score[i]); free(abc->cons_phred_score); 2025-10-18T09:08:01,592 | ^~~ 2025-10-18T09:08:01,593 src/abpoa_graph.c:733:79: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2025-10-18T09:08:01,593 733 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_phred_score[i]); free(abc->cons_phred_score); 2025-10-18T09:08:01,593 | ^~~~ 2025-10-18T09:08:01,626 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-10-18T09:08:01,920 ERROR: python setup.py bdist_wheel exited with 1 2025-10-18T09:08:01,932 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-10-18T09:08:01,932 exec(compile('"'"''"'"''"'"' 2025-10-18T09:08:01,932 # This is -- a caller that pip uses to run setup.py 2025-10-18T09:08:01,932 # 2025-10-18T09:08:01,932 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-10-18T09:08:01,932 # import from `distutils.core` to work with newer packaging standards. 2025-10-18T09:08:01,932 # - It provides a clear error message when setuptools is not installed. 2025-10-18T09:08:01,932 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-10-18T09:08:01,932 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-10-18T09:08:01,932 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-10-18T09:08:01,932 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-10-18T09:08:01,932 import os, sys, tokenize, traceback 2025-10-18T09:08:01,932 2025-10-18T09:08:01,932 try: 2025-10-18T09:08:01,932 import setuptools 2025-10-18T09:08:01,932 except ImportError: 2025-10-18T09:08:01,932 print( 2025-10-18T09:08:01,932 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-10-18T09:08:01,932 "the build environment with exception:", 2025-10-18T09:08:01,932 file=sys.stderr, 2025-10-18T09:08:01,932 ) 2025-10-18T09:08:01,932 traceback.print_exc() 2025-10-18T09:08:01,932 sys.exit(1) 2025-10-18T09:08:01,932 2025-10-18T09:08:01,932 __file__ = %r 2025-10-18T09:08:01,932 sys.argv[0] = __file__ 2025-10-18T09:08:01,932 2025-10-18T09:08:01,932 if os.path.exists(__file__): 2025-10-18T09:08:01,932 filename = __file__ 2025-10-18T09:08:01,932 with tokenize.open(__file__) as f: 2025-10-18T09:08:01,932 setup_py_code = f.read() 2025-10-18T09:08:01,932 else: 2025-10-18T09:08:01,932 filename = "" 2025-10-18T09:08:01,932 setup_py_code = "from setuptools import setup; setup()" 2025-10-18T09:08:01,932 2025-10-18T09:08:01,932 exec(compile(setup_py_code, filename, "exec")) 2025-10-18T09:08:01,932 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-qxt1zuhb/pyabpoa_d56099030a6149199fc585c56a97a313/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-ukjqvwgo[/] 2025-10-18T09:08:01,932 [bold magenta]cwd[/]: /tmp/pip-wheel-qxt1zuhb/pyabpoa_d56099030a6149199fc585c56a97a313/ 2025-10-18T09:08:01,933 Building wheel for pyabpoa (setup.py): finished with status 'error' 2025-10-18T09:08:01,934 ERROR: Failed building wheel for pyabpoa 2025-10-18T09:08:01,934 Running setup.py clean for pyabpoa 2025-10-18T09:08:01,935 Running command python setup.py clean 2025-10-18T09:08:02,564 /usr/local/lib/python3.13/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-10-18T09:08:02,564 !! 2025-10-18T09:08:02,565 ******************************************************************************** 2025-10-18T09:08:02,565 Requirements should be satisfied by a PEP 517 installer. 2025-10-18T09:08:02,565 If you are using pip, you can try `pip install --use-pep517`. 2025-10-18T09:08:02,565 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-10-18T09:08:02,565 or your builds will no longer be supported. 2025-10-18T09:08:02,565 ******************************************************************************** 2025-10-18T09:08:02,565 !! 2025-10-18T09:08:02,565 dist.fetch_build_eggs(dist.setup_requires) 2025-10-18T09:08:03,085 running clean 2025-10-18T09:08:03,230 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-10-18T09:08:03,230 'build/lib.linux-armv7l-cpython-313' does not exist -- can't clean it 2025-10-18T09:08:03,231 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-10-18T09:08:03,231 'build/scripts-3.13' does not exist -- can't clean it 2025-10-18T09:08:03,231 removing 'build' 2025-10-18T09:08:03,341 Failed to build pyabpoa 2025-10-18T09:08:03,341 ERROR: Failed to build one or more wheels 2025-10-18T09:08:03,342 Exception information: 2025-10-18T09:08:03,342 Traceback (most recent call last): 2025-10-18T09:08:03,342 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-10-18T09:08:03,342 status = _inner_run() 2025-10-18T09:08:03,342 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-10-18T09:08:03,342 return self.run(options, args) 2025-10-18T09:08:03,342 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-10-18T09:08:03,342 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-10-18T09:08:03,342 return func(self, options, args) 2025-10-18T09:08:03,342 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-10-18T09:08:03,342 raise CommandError("Failed to build one or more wheels") 2025-10-18T09:08:03,342 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-10-18T09:08:03,346 Removed build tracker: '/tmp/pip-build-tracker-qvsnacbm'