2025-10-21T14:31:06,355 Created temporary directory: /tmp/pip-build-tracker-vm323wy3 2025-10-21T14:31:06,355 Initialized build tracking at /tmp/pip-build-tracker-vm323wy3 2025-10-21T14:31:06,355 Created build tracker: /tmp/pip-build-tracker-vm323wy3 2025-10-21T14:31:06,355 Entered build tracker: /tmp/pip-build-tracker-vm323wy3 2025-10-21T14:31:06,356 Created temporary directory: /tmp/pip-wheel-2pis4xkw 2025-10-21T14:31:06,359 Created temporary directory: /tmp/pip-ephem-wheel-cache-crqgy5po 2025-10-21T14:31:06,418 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-21T14:31:06,420 2 location(s) to search for versions of kssdtree: 2025-10-21T14:31:06,420 * https://pypi.org/simple/kssdtree/ 2025-10-21T14:31:06,420 * https://www.piwheels.org/simple/kssdtree/ 2025-10-21T14:31:06,421 Fetching project page and analyzing links: https://pypi.org/simple/kssdtree/ 2025-10-21T14:31:06,421 Getting page https://pypi.org/simple/kssdtree/ 2025-10-21T14:31:06,422 Found index url https://pypi.org/simple/ 2025-10-21T14:31:06,570 Fetched page https://pypi.org/simple/kssdtree/ as application/vnd.pypi.simple.v1+json 2025-10-21T14:31:06,576 Found link https://files.pythonhosted.org/packages/d5/1e/9e5c5945a44bb40002d1c259f734a531999fa6e87db89fe7c7ddcfc583cc/kssdtree-1.1.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.1 2025-10-21T14:31:06,577 Found link https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.2 2025-10-21T14:31:06,577 Found link https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.3 2025-10-21T14:31:06,578 Found link https://files.pythonhosted.org/packages/20/ea/b0301924e3f7d367cbb7b8da66837dba9af2a332bf56ed35e03a33faee76/kssdtree-1.1.4.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.4 2025-10-21T14:31:06,578 Found link https://files.pythonhosted.org/packages/41/65/ed35110b84bc0dd02b9add0104f10160754d2ea0882191767d512146a884/kssdtree-1.1.6.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.6 2025-10-21T14:31:06,579 Found link https://files.pythonhosted.org/packages/cd/4b/d886cbcc573ff0969da7d9c756049925b86141e60ee6708dfbbe0644d008/kssdtree-1.1.7.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.7 2025-10-21T14:31:06,579 Found link https://files.pythonhosted.org/packages/7e/8a/a62c8adc92df69ab8cb242827ee64a3e2b6d5c89b83425785dd00605af17/kssdtree-1.1.8.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.8 2025-10-21T14:31:06,580 Found link https://files.pythonhosted.org/packages/da/db/e458cca6427752c05428d2378ccdee631d32f760174fdaba65f73125e71b/kssdtree-1.1.9.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.9 2025-10-21T14:31:06,580 Found link https://files.pythonhosted.org/packages/9d/47/017180a30e73e421372377cbe6d01c5e51a5108ea2177f20ccd7d283f8d1/kssdtree-2.0.0.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.0 2025-10-21T14:31:06,580 Found link https://files.pythonhosted.org/packages/ba/39/d443cac955912a0371c93b797311cb9ec3a8d6ee0a5d7673376d826aa6b2/kssdtree-2.0.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.1 2025-10-21T14:31:06,581 Found link https://files.pythonhosted.org/packages/2e/32/e53c0e3735cbc913b2c96b4e0e1c1005fe816a4d71b38b80cdcfb5c67fa8/kssdtree-2.0.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.2 2025-10-21T14:31:06,581 Found link https://files.pythonhosted.org/packages/c0/0f/effc10c8e76dbe3b9a35a4b4d9e65a0a889ee805e10334541c3ca7ae3b94/kssdtree-2.0.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.3 2025-10-21T14:31:06,582 Found link https://files.pythonhosted.org/packages/fc/8d/d3790baa2f2f0a01c913005b94a82dc13ef601e7015e662ccff94bb1b458/kssdtree-2.0.4.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.4 2025-10-21T14:31:06,582 Found link https://files.pythonhosted.org/packages/b5/f8/19480a4c57704944f973ebf534f9582054949cca20170a33c6f874974440/kssdtree-2.0.5.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.5 2025-10-21T14:31:06,583 Found link https://files.pythonhosted.org/packages/46/ef/2d920d5d2fceded48c7add363e04f49ae85414bcd4360e1295d6fddc4a24/kssdtree-2.0.6.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.6 2025-10-21T14:31:06,583 Found link https://files.pythonhosted.org/packages/9c/1c/c6b3f05465d145856ac992328bd59e776286a59b120254620c1dbffcf67f/kssdtree-2.0.7.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.7 2025-10-21T14:31:06,584 Found link https://files.pythonhosted.org/packages/82/9b/dac2af6572f0c4421e5ba8341dcfddac466de30c62acfa019d9ef70b2670/kssdtree-2.0.8.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.8 2025-10-21T14:31:06,584 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdtree/ 2025-10-21T14:31:06,585 Getting page https://www.piwheels.org/simple/kssdtree/ 2025-10-21T14:31:06,587 Found index url https://www.piwheels.org/simple/ 2025-10-21T14:31:06,682 Fetched page https://www.piwheels.org/simple/kssdtree/ as text/html 2025-10-21T14:31:06,699 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv6l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,699 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp311-cp311-linux_armv7l.whl#sha256=af8a0b06198bfd1ce24b078cdad070d5c587b126973ade98efa6ab13b9c2fc32 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,699 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp39-cp39-linux_armv6l.whl#sha256=fb6f717dcadeee1974e114645ccfca55bc46eb4f46872cea71acc544102be042 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,700 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-2.0.8-cp39-cp39-linux_armv7l.whl#sha256=fb6f717dcadeee1974e114645ccfca55bc46eb4f46872cea71acc544102be042 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,700 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv6l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,700 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp311-cp311-linux_armv7l.whl#sha256=f267901a8f679be9a77fc090fb1c15f5144a295e5158a4ff2e62e2ba29fec967 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,700 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp39-cp39-linux_armv6l.whl#sha256=27677e716e6d66163d5aa6b6f09a6aaae97d4a8cf4882e9eab54b93800cc3ea8 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,700 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-2.0.7-cp39-cp39-linux_armv7l.whl#sha256=27677e716e6d66163d5aa6b6f09a6aaae97d4a8cf4882e9eab54b93800cc3ea8 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,700 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp311-cp311-linux_armv6l.whl#sha256=e1e02281e0fc8ed3b80b596a811ca2a9b50cb7affb3649479228d59c074c1f94 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,701 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp311-cp311-linux_armv7l.whl#sha256=e1e02281e0fc8ed3b80b596a811ca2a9b50cb7affb3649479228d59c074c1f94 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,701 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp39-cp39-linux_armv6l.whl#sha256=6cc8e863f6316aa656790c5fc8a7bb42bbb33d4db4a6256f3e30131b023d5e41 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,701 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-2.0.6-cp39-cp39-linux_armv7l.whl#sha256=6cc8e863f6316aa656790c5fc8a7bb42bbb33d4db4a6256f3e30131b023d5e41 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,701 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp311-cp311-linux_armv6l.whl#sha256=cecf3000ed0ffcd720412023d8de2f213356363c01aa3193441c040ed34353d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,701 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp311-cp311-linux_armv7l.whl#sha256=cecf3000ed0ffcd720412023d8de2f213356363c01aa3193441c040ed34353d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,701 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp39-cp39-linux_armv6l.whl#sha256=db08595adc89347b61965ba36e918055e8a0dc5f6a2b0bdfe16133eb363412d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,701 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.5-cp39-cp39-linux_armv7l.whl#sha256=db08595adc89347b61965ba36e918055e8a0dc5f6a2b0bdfe16133eb363412d3 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,702 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp311-cp311-linux_armv6l.whl#sha256=97a69f799c2d1b7024a9033b8a1e3fc17af4748a1ed726f52397d884303eb870 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,702 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp311-cp311-linux_armv7l.whl#sha256=97a69f799c2d1b7024a9033b8a1e3fc17af4748a1ed726f52397d884303eb870 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,702 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp39-cp39-linux_armv6l.whl#sha256=00938a03bead64e58bc1928832b7952b04d844e79b41da12160490c7edbb9e9f (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,702 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.4-cp39-cp39-linux_armv7l.whl#sha256=00938a03bead64e58bc1928832b7952b04d844e79b41da12160490c7edbb9e9f (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,702 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp311-cp311-linux_armv6l.whl#sha256=d70b4b00c6bf4ff5b294b9ad2594aa1e32981df4b9869be9d13aafa0ff614bc3 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,702 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp311-cp311-linux_armv7l.whl#sha256=d70b4b00c6bf4ff5b294b9ad2594aa1e32981df4b9869be9d13aafa0ff614bc3 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,702 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp39-cp39-linux_armv6l.whl#sha256=f629766f3426bb8a83c6f4adca8b02b03cb85452c129c9694cef65efd715fabd (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,703 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.3-cp39-cp39-linux_armv7l.whl#sha256=f629766f3426bb8a83c6f4adca8b02b03cb85452c129c9694cef65efd715fabd (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,703 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp311-cp311-linux_armv6l.whl#sha256=ae7417e30efd12d8c6800d4167141c94a93f1ce51afd5ae9196cdfb6057ca7d2 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,703 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp311-cp311-linux_armv7l.whl#sha256=ae7417e30efd12d8c6800d4167141c94a93f1ce51afd5ae9196cdfb6057ca7d2 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,703 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv6l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,703 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-2.0.2-cp39-cp39-linux_armv7l.whl#sha256=599ca3576cae9c0ef5ce475baaee98faa1478f8fd034062ddf88f823c9c91b10 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,703 Skipping link: No binaries permitted for kssdtree: 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https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.9-cp39-cp39-linux_armv7l.whl#sha256=ab11dc15aca2923fe0d60bf11deb134bed4df89280b4ce40ca8e9bf3ca46b168 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,705 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp39-cp39-linux_armv6l.whl#sha256=6b3f5b0e827056c7b589f4fb02c353408efa5892ef4df1c8a54b4cb30331754a (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,705 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp39-cp39-linux_armv7l.whl#sha256=6b3f5b0e827056c7b589f4fb02c353408efa5892ef4df1c8a54b4cb30331754a (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,705 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv6l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,705 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv7l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,705 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp311-cp311-linux_armv6l.whl#sha256=388a8dabd657ea83e6d22b52300337c74e9d84e506806cfd4d2a76eb98777e17 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,706 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp311-cp311-linux_armv7l.whl#sha256=388a8dabd657ea83e6d22b52300337c74e9d84e506806cfd4d2a76eb98777e17 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,706 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp39-cp39-linux_armv6l.whl#sha256=e1df896451d30c12e01aceb3eb91f0f7dfe0ee6f16fd66864fdefbc21cc54856 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,706 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp39-cp39-linux_armv7l.whl#sha256=e1df896451d30c12e01aceb3eb91f0f7dfe0ee6f16fd66864fdefbc21cc54856 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,706 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv6l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,706 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv7l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,706 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv6l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,706 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv7l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,707 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv6l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,707 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv7l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,707 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,707 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,707 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,707 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,708 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,708 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,708 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv6l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,708 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv7l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,708 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,708 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,708 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,709 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,709 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,709 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,709 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,709 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,709 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv6l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,709 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv7l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,710 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,710 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,710 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,710 Skipping link: No binaries permitted for kssdtree: https://archive1.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2025-10-21T14:31:06,710 Skipping link: not a file: https://www.piwheels.org/simple/kssdtree/ 2025-10-21T14:31:06,710 Skipping link: not a file: https://pypi.org/simple/kssdtree/ 2025-10-21T14:31:06,734 Given no hashes to check 1 links for project 'kssdtree': discarding no candidates 2025-10-21T14:31:06,735 Collecting kssdtree==2.0.8 2025-10-21T14:31:06,736 Created temporary directory: /tmp/pip-unpack-36absel6 2025-10-21T14:31:06,797 Downloading kssdtree-2.0.8.tar.gz (114 kB) 2025-10-21T14:31:06,896 Added kssdtree==2.0.8 from https://files.pythonhosted.org/packages/82/9b/dac2af6572f0c4421e5ba8341dcfddac466de30c62acfa019d9ef70b2670/kssdtree-2.0.8.tar.gz to build tracker '/tmp/pip-build-tracker-vm323wy3' 2025-10-21T14:31:06,900 Running setup.py (path:/tmp/pip-wheel-2pis4xkw/kssdtree_f9d92bcd8d7b4fcc9f582043ceca7ee2/setup.py) egg_info for package kssdtree 2025-10-21T14:31:06,900 Created temporary directory: /tmp/pip-pip-egg-info-coeia9hq 2025-10-21T14:31:06,900 Preparing metadata (setup.py): started 2025-10-21T14:31:06,901 Running command python setup.py egg_info 2025-10-21T14:31:08,401 running egg_info 2025-10-21T14:31:08,474 creating /tmp/pip-pip-egg-info-coeia9hq/kssdtree.egg-info 2025-10-21T14:31:08,475 writing /tmp/pip-pip-egg-info-coeia9hq/kssdtree.egg-info/PKG-INFO 2025-10-21T14:31:08,476 writing dependency_links to /tmp/pip-pip-egg-info-coeia9hq/kssdtree.egg-info/dependency_links.txt 2025-10-21T14:31:08,477 writing requirements to /tmp/pip-pip-egg-info-coeia9hq/kssdtree.egg-info/requires.txt 2025-10-21T14:31:08,478 writing top-level names to /tmp/pip-pip-egg-info-coeia9hq/kssdtree.egg-info/top_level.txt 2025-10-21T14:31:08,478 writing manifest file '/tmp/pip-pip-egg-info-coeia9hq/kssdtree.egg-info/SOURCES.txt' 2025-10-21T14:31:08,773 reading manifest file '/tmp/pip-pip-egg-info-coeia9hq/kssdtree.egg-info/SOURCES.txt' 2025-10-21T14:31:08,774 reading manifest template 'MANIFEST.in' 2025-10-21T14:31:08,781 writing manifest file '/tmp/pip-pip-egg-info-coeia9hq/kssdtree.egg-info/SOURCES.txt' 2025-10-21T14:31:08,891 Preparing metadata (setup.py): finished with status 'done' 2025-10-21T14:31:08,895 Source in /tmp/pip-wheel-2pis4xkw/kssdtree_f9d92bcd8d7b4fcc9f582043ceca7ee2 has version 2.0.8, which satisfies requirement kssdtree==2.0.8 from https://files.pythonhosted.org/packages/82/9b/dac2af6572f0c4421e5ba8341dcfddac466de30c62acfa019d9ef70b2670/kssdtree-2.0.8.tar.gz 2025-10-21T14:31:08,896 Removed kssdtree==2.0.8 from https://files.pythonhosted.org/packages/82/9b/dac2af6572f0c4421e5ba8341dcfddac466de30c62acfa019d9ef70b2670/kssdtree-2.0.8.tar.gz from build tracker '/tmp/pip-build-tracker-vm323wy3' 2025-10-21T14:31:08,899 Created temporary directory: /tmp/pip-unpack-o6ygoufg 2025-10-21T14:31:08,899 Created temporary directory: /tmp/pip-unpack-0txwaw0y 2025-10-21T14:31:08,900 Building wheels for collected packages: kssdtree 2025-10-21T14:31:08,901 Created temporary directory: /tmp/pip-wheel-mx84_9pa 2025-10-21T14:31:08,901 DEPRECATION: Building 'kssdtree' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'kssdtree'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-10-21T14:31:08,902 Building wheel for kssdtree (setup.py): started 2025-10-21T14:31:08,903 Destination directory: /tmp/pip-wheel-mx84_9pa 2025-10-21T14:31:08,903 Running command python setup.py bdist_wheel 2025-10-21T14:31:09,988 running bdist_wheel 2025-10-21T14:31:10,357 running build 2025-10-21T14:31:10,357 running build_py 2025-10-21T14:31:10,434 creating build/lib.linux-armv7l-cpython-313 2025-10-21T14:31:10,434 copying kssdtree.py -> build/lib.linux-armv7l-cpython-313 2025-10-21T14:31:10,435 copying toolutils.py -> build/lib.linux-armv7l-cpython-313 2025-10-21T14:31:10,435 running egg_info 2025-10-21T14:31:10,508 writing kssdtree.egg-info/PKG-INFO 2025-10-21T14:31:10,509 writing dependency_links to kssdtree.egg-info/dependency_links.txt 2025-10-21T14:31:10,510 writing requirements to kssdtree.egg-info/requires.txt 2025-10-21T14:31:10,510 writing top-level names to kssdtree.egg-info/top_level.txt 2025-10-21T14:31:10,587 reading manifest file 'kssdtree.egg-info/SOURCES.txt' 2025-10-21T14:31:10,591 reading manifest template 'MANIFEST.in' 2025-10-21T14:31:10,599 writing manifest file 'kssdtree.egg-info/SOURCES.txt' 2025-10-21T14:31:10,600 running build_ext 2025-10-21T14:31:11,018 building 'kssd' extension 2025-10-21T14:31:11,020 creating build/temp.linux-armv7l-cpython-313 2025-10-21T14:31:11,021 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c co2mco.c -o build/temp.linux-armv7l-cpython-313/co2mco.o -fopenmp 2025-10-21T14:31:11,205 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2025-10-21T14:31:11,205 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-10-21T14:31:11,205 109 | for (unsigned int i = 0; i < comp_num; i++) { 2025-10-21T14:31:11,205 | ^ 2025-10-21T14:31:11,208 co2mco.c: In function ‘co2unitllmco’: 2025-10-21T14:31:11,209 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-10-21T14:31:11,209 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2025-10-21T14:31:11,209 | ^ 2025-10-21T14:31:11,906 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_composite.c -o build/temp.linux-armv7l-cpython-313/command_composite.o -fopenmp 2025-10-21T14:31:12,295 command_composite.c: In function ‘get_species_abundance’: 2025-10-21T14:31:12,295 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-10-21T14:31:12,295 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2025-10-21T14:31:12,295 | ^~ 2025-10-21T14:31:12,296 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-10-21T14:31:12,296 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2025-10-21T14:31:12,296 | ^~ 2025-10-21T14:31:12,296 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:12,296 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-10-21T14:31:12,296 | ^ 2025-10-21T14:31:12,297 command_composite.c:64:31: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:12,297 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-10-21T14:31:12,297 | ^~~~~~~~~~ 2025-10-21T14:31:12,297 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-10-21T14:31:12,298 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-10-21T14:31:12,298 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:12,298 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:12,298 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-10-21T14:31:12,298 | ^ 2025-10-21T14:31:12,298 command_composite.c:70:31: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:12,298 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-10-21T14:31:12,299 | ^~~~~~~~~~ 2025-10-21T14:31:12,299 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-10-21T14:31:12,299 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-10-21T14:31:12,299 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:12,299 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:12,299 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-10-21T14:31:12,300 | ^ 2025-10-21T14:31:12,300 command_composite.c:76:31: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:12,300 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-10-21T14:31:12,300 | ^~~~~~~~~~ 2025-10-21T14:31:12,300 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-10-21T14:31:12,300 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-10-21T14:31:12,300 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:12,301 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:12,301 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-10-21T14:31:12,301 | ^ 2025-10-21T14:31:12,301 command_composite.c:82:31: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:12,301 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-10-21T14:31:12,301 | ^~~~~~~~~~ 2025-10-21T14:31:12,302 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-10-21T14:31:12,302 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-10-21T14:31:12,302 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:12,302 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:12,302 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-10-21T14:31:12,302 | ^ 2025-10-21T14:31:12,303 command_composite.c:88:31: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:12,303 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-10-21T14:31:12,303 | ^~~~~~~~~~~~ 2025-10-21T14:31:12,303 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2025-10-21T14:31:12,303 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-10-21T14:31:12,303 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:12,551 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist.c -o build/temp.linux-armv7l-cpython-313/command_dist.o -fopenmp 2025-10-21T14:31:12,794 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-10-21T14:31:12,796 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-10-21T14:31:12,796 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-10-21T14:31:12,796 | ~~^ 2025-10-21T14:31:12,796 | | 2025-10-21T14:31:12,796 | long unsigned int 2025-10-21T14:31:12,797 | %u 2025-10-21T14:31:12,797 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-10-21T14:31:12,797 | ~~~~~~~ 2025-10-21T14:31:12,797 | | 2025-10-21T14:31:12,797 | size_t {aka unsigned int} 2025-10-21T14:31:12,798 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-10-21T14:31:12,798 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-10-21T14:31:12,798 | ~~^ 2025-10-21T14:31:12,798 | | 2025-10-21T14:31:12,798 | long unsigned int 2025-10-21T14:31:12,798 | %u 2025-10-21T14:31:12,798 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-10-21T14:31:12,799 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-10-21T14:31:12,799 | ~~~~~~~~~ 2025-10-21T14:31:12,799 | | 2025-10-21T14:31:12,799 | size_t {aka unsigned int} 2025-10-21T14:31:12,800 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-10-21T14:31:12,800 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-10-21T14:31:12,800 | ~~^ 2025-10-21T14:31:12,800 | | 2025-10-21T14:31:12,800 | long unsigned int 2025-10-21T14:31:12,800 | %u 2025-10-21T14:31:12,800 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-10-21T14:31:12,801 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-10-21T14:31:12,801 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:12,801 | | 2025-10-21T14:31:12,801 | unsigned int 2025-10-21T14:31:12,803 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-10-21T14:31:12,803 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2025-10-21T14:31:12,803 | ^ 2025-10-21T14:31:12,810 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-10-21T14:31:12,812 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-10-21T14:31:12,812 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-10-21T14:31:12,813 | ~~^ ~~~~~~~ 2025-10-21T14:31:12,813 | | | 2025-10-21T14:31:12,813 | long unsigned int size_t {aka unsigned int} 2025-10-21T14:31:12,813 | %u 2025-10-21T14:31:12,815 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-10-21T14:31:12,815 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-10-21T14:31:12,815 | ~~^ 2025-10-21T14:31:12,815 | | 2025-10-21T14:31:12,815 | long unsigned int 2025-10-21T14:31:12,815 | %u 2025-10-21T14:31:12,815 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-10-21T14:31:12,815 | ~~~~~~~~~ 2025-10-21T14:31:12,815 | | 2025-10-21T14:31:12,816 | size_t {aka unsigned int} 2025-10-21T14:31:12,817 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-10-21T14:31:12,817 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-10-21T14:31:12,817 | ~~^ 2025-10-21T14:31:12,818 | | 2025-10-21T14:31:12,818 | long unsigned int 2025-10-21T14:31:12,818 | %u 2025-10-21T14:31:12,818 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-10-21T14:31:12,818 865 | (size_t) b * unitsz_distf_mapped); 2025-10-21T14:31:12,818 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:12,818 | | 2025-10-21T14:31:12,818 | unsigned int 2025-10-21T14:31:12,820 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2025-10-21T14:31:12,820 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2025-10-21T14:31:12,820 | ^~~~~~~ 2025-10-21T14:31:12,821 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2025-10-21T14:31:12,821 809 | struct stat cbd_fcode_stat; 2025-10-21T14:31:12,821 | ^~~~~~~~~~~~~~ 2025-10-21T14:31:12,822 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2025-10-21T14:31:12,822 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-10-21T14:31:12,822 | ^~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:12,823 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2025-10-21T14:31:12,823 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-10-21T14:31:12,823 | ^~~~~~~~~~~~~~~~~ 2025-10-21T14:31:12,830 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-10-21T14:31:12,833 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-10-21T14:31:12,833 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-10-21T14:31:12,833 | ~~^ 2025-10-21T14:31:12,833 | | 2025-10-21T14:31:12,833 | long unsigned int 2025-10-21T14:31:12,833 | %u 2025-10-21T14:31:12,833 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-10-21T14:31:12,833 | ~~~~~~~ 2025-10-21T14:31:12,833 | | 2025-10-21T14:31:12,833 | size_t {aka unsigned int} 2025-10-21T14:31:12,835 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-10-21T14:31:12,836 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-10-21T14:31:12,836 | ~~^ 2025-10-21T14:31:12,836 | | 2025-10-21T14:31:12,836 | long unsigned int 2025-10-21T14:31:12,836 | %u 2025-10-21T14:31:12,836 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-10-21T14:31:12,836 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-10-21T14:31:12,836 | ~~~~~~~~~ 2025-10-21T14:31:12,836 | | 2025-10-21T14:31:12,836 | size_t {aka unsigned int} 2025-10-21T14:31:12,838 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-10-21T14:31:12,839 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-10-21T14:31:12,839 | ~~^ 2025-10-21T14:31:12,839 | | 2025-10-21T14:31:12,839 | long unsigned int 2025-10-21T14:31:12,839 | %u 2025-10-21T14:31:12,839 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-10-21T14:31:12,839 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-10-21T14:31:12,839 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:12,839 | | 2025-10-21T14:31:12,839 | unsigned int 2025-10-21T14:31:12,844 command_dist.c: In function ‘mco_co_dist_core’: 2025-10-21T14:31:12,845 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-10-21T14:31:12,845 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2025-10-21T14:31:12,846 | ^ 2025-10-21T14:31:12,847 command_dist.c: In function ‘fname_dist_print’: 2025-10-21T14:31:12,848 command_dist.c:1163:25: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘__off64_t’ {aka ‘long long int’} [-Wsign-compare] 2025-10-21T14:31:12,848 1163 | for (llong i = 0; i < s.st_size / sizeof(ctx_obj_ct_t); i++) { 2025-10-21T14:31:12,848 | ^ 2025-10-21T14:31:12,853 command_dist.c: In function ‘koc_dist_print_nobin’: 2025-10-21T14:31:12,854 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-10-21T14:31:12,855 1239 | for (int rid = 0; rid < ref_num; rid++) 2025-10-21T14:31:12,855 | ^ 2025-10-21T14:31:12,857 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-10-21T14:31:12,857 1245 | for (int rid = 0; rid < ref_num; rid++) { 2025-10-21T14:31:12,857 | ^ 2025-10-21T14:31:12,863 command_dist.c: In function ‘dist_print_nobin’: 2025-10-21T14:31:12,864 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-10-21T14:31:12,865 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2025-10-21T14:31:12,865 | ^ 2025-10-21T14:31:12,868 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-10-21T14:31:12,868 1356 | for (int rid = 0; rid < ref_num; rid++) { 2025-10-21T14:31:12,868 | ^ 2025-10-21T14:31:12,870 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-10-21T14:31:12,870 1382 | for (int rid = 0; rid < ref_num; rid++) 2025-10-21T14:31:12,870 | ^ 2025-10-21T14:31:13,259 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2025-10-21T14:31:13,259 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2025-10-21T14:31:13,259 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2025-10-21T14:31:13,259 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:13,259 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2025-10-21T14:31:13,260 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2025-10-21T14:31:13,260 | ^~~~~~~~~~~~ 2025-10-21T14:31:14,065 command_dist.c: In function ‘get_dim_shuffle’: 2025-10-21T14:31:14,065 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2025-10-21T14:31:14,065 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-10-21T14:31:14,066 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:14,066 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2025-10-21T14:31:14,066 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-10-21T14:31:14,066 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:14,983 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-10-21T14:31:14,984 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:14,984 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-10-21T14:31:14,984 | ^~ ~~~~~~~~~ 2025-10-21T14:31:14,985 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-10-21T14:31:14,985 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-10-21T14:31:14,985 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:14,986 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-10-21T14:31:14,986 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-10-21T14:31:14,986 | ^~~~~~~~~~~~~~~ 2025-10-21T14:31:14,987 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-10-21T14:31:14,987 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-10-21T14:31:14,987 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:14,989 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-10-21T14:31:14,989 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-10-21T14:31:14,989 | ^~~~~~~~~~~ 2025-10-21T14:31:14,990 command_dist.c:681:38: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:14,990 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-10-21T14:31:14,990 | ^~~~~~~~~~~~~~~~~ 2025-10-21T14:31:14,991 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-10-21T14:31:14,991 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-10-21T14:31:14,991 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:14,992 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-10-21T14:31:14,992 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-10-21T14:31:14,992 | ^~~~~ 2025-10-21T14:31:14,993 command_dist.c:682:32: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:14,993 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-10-21T14:31:14,993 | ^~~~~~~~~~~ 2025-10-21T14:31:14,994 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-10-21T14:31:14,994 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-10-21T14:31:14,994 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:15,240 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-10-21T14:31:15,241 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:15,241 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-10-21T14:31:15,242 | ^~ ~~~~~~~~~ 2025-10-21T14:31:15,242 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-10-21T14:31:15,242 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-10-21T14:31:15,243 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:15,244 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-10-21T14:31:15,244 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-10-21T14:31:15,244 | ^~~~~~~~~~~~~~~ 2025-10-21T14:31:15,245 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-10-21T14:31:15,245 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-10-21T14:31:15,245 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:15,246 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-10-21T14:31:15,246 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-10-21T14:31:15,246 | ^~~~~~~~~~~~~ 2025-10-21T14:31:15,247 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-10-21T14:31:15,247 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-10-21T14:31:15,247 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:15,248 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:15,248 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-10-21T14:31:15,248 | ^ 2025-10-21T14:31:15,249 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2025-10-21T14:31:15,250 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-10-21T14:31:15,250 | ^~~~~~~~~~ 2025-10-21T14:31:15,251 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-10-21T14:31:15,251 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-10-21T14:31:15,251 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:15,252 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:15,252 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-10-21T14:31:15,252 | ^ 2025-10-21T14:31:15,253 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2025-10-21T14:31:15,253 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-10-21T14:31:15,253 | ^~~~~~~~~~ 2025-10-21T14:31:15,254 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-10-21T14:31:15,254 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-10-21T14:31:15,254 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:15,519 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-10-21T14:31:15,521 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:15,521 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-10-21T14:31:15,521 | ^~ ~~~~~~~~~ 2025-10-21T14:31:15,522 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-10-21T14:31:15,522 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-10-21T14:31:15,523 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:15,524 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-10-21T14:31:15,524 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-10-21T14:31:15,524 | ^~~~~~~~~~~~~~~ 2025-10-21T14:31:15,525 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-10-21T14:31:15,525 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-10-21T14:31:15,525 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:15,527 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-10-21T14:31:15,527 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-10-21T14:31:15,527 | ^~~~~~~~~~~~~ 2025-10-21T14:31:15,528 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-10-21T14:31:15,528 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-10-21T14:31:15,528 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:15,530 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-10-21T14:31:15,530 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-10-21T14:31:15,530 | ^~~~~~~~~~~ 2025-10-21T14:31:15,532 command_dist.c:1022:38: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:15,532 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-10-21T14:31:15,532 | ^~~~~~~~~~~~~~~~~ 2025-10-21T14:31:15,533 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-10-21T14:31:15,533 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-10-21T14:31:15,533 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:15,534 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-10-21T14:31:15,534 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-10-21T14:31:15,535 | ^~~~~ 2025-10-21T14:31:15,536 command_dist.c:1023:32: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:15,536 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-10-21T14:31:15,536 | ^~~~~~~~~~~ 2025-10-21T14:31:15,537 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-10-21T14:31:15,537 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-10-21T14:31:15,537 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:15,813 command_dist.c: In function ‘combine_queries’: 2025-10-21T14:31:15,815 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-10-21T14:31:15,815 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-10-21T14:31:15,815 | ^ 2025-10-21T14:31:15,817 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-10-21T14:31:15,817 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-10-21T14:31:15,817 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:15,819 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-10-21T14:31:15,819 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-10-21T14:31:15,819 | ^ 2025-10-21T14:31:15,821 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-10-21T14:31:15,821 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-10-21T14:31:15,821 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:15,825 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:15,825 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-10-21T14:31:15,825 | ^~ ~~~~~~~~ 2025-10-21T14:31:15,827 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-10-21T14:31:15,827 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-10-21T14:31:15,827 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:16,315 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-313/command_dist_wrapper.o -fopenmp 2025-10-21T14:31:16,485 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_set.c -o build/temp.linux-armv7l-cpython-313/command_set.o -fopenmp 2025-10-21T14:31:16,656 command_set.c: In function ‘sketch_operate’: 2025-10-21T14:31:16,657 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-10-21T14:31:16,657 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2025-10-21T14:31:16,657 | ^ 2025-10-21T14:31:16,669 command_set.c: In function ‘combin_subset_pans’: 2025-10-21T14:31:16,670 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-10-21T14:31:16,670 457 | free(co_dstat_fpath); 2025-10-21T14:31:16,670 | ^~~~~~~~~~~~~~ 2025-10-21T14:31:16,670 In file included from kssdheaders/global_basic.h:159, 2025-10-21T14:31:16,670 from command_set.c:15: 2025-10-21T14:31:16,671 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-10-21T14:31:16,671 687 | extern void free (void *__ptr) __THROW; 2025-10-21T14:31:16,671 | ~~~~~~^~~~~ 2025-10-21T14:31:16,677 command_set.c: In function ‘grouping_genomes’: 2025-10-21T14:31:16,677 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-10-21T14:31:16,678 562 | free(co_dstat_fpath); 2025-10-21T14:31:16,678 | ^~~~~~~~~~~~~~ 2025-10-21T14:31:16,678 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-10-21T14:31:16,678 687 | extern void free (void *__ptr) __THROW; 2025-10-21T14:31:16,678 | ~~~~~~^~~~~ 2025-10-21T14:31:16,853 command_set.c: In function ‘sketch_union’: 2025-10-21T14:31:16,853 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-10-21T14:31:16,854 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-10-21T14:31:16,854 | ^ 2025-10-21T14:31:16,854 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-10-21T14:31:16,854 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-10-21T14:31:16,854 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:16,854 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:16,854 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-10-21T14:31:16,854 | ^~ ~~~~~~~~~~~ 2025-10-21T14:31:16,854 command_set.c:82:25: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:16,854 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-10-21T14:31:16,855 | ^~~~~~~~~~ 2025-10-21T14:31:16,855 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-10-21T14:31:16,855 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-10-21T14:31:16,855 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:16,855 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:16,855 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-10-21T14:31:16,855 | ^~ ~~~~~~~~~~ 2025-10-21T14:31:16,855 command_set.c:92:25: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:16,855 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-10-21T14:31:16,856 | ^~~~~~~~~~ 2025-10-21T14:31:16,856 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-10-21T14:31:16,856 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-10-21T14:31:16,856 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:16,985 command_set.c: In function ‘sketch_operate’: 2025-10-21T14:31:16,985 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:16,985 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-10-21T14:31:16,985 | ^~ ~~~~~~~~~~ 2025-10-21T14:31:16,985 command_set.c:153:25: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:16,985 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-10-21T14:31:16,985 | ^~~~~~~~~~ 2025-10-21T14:31:16,985 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-10-21T14:31:16,985 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-10-21T14:31:16,986 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:16,986 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:16,986 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-10-21T14:31:16,986 | ^~ ~~~~~~~~~~~~~~~ 2025-10-21T14:31:16,986 command_set.c:155:29: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:16,986 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-10-21T14:31:16,986 | ^~~~~~~~~~ 2025-10-21T14:31:16,986 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-10-21T14:31:16,986 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-10-21T14:31:16,986 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:16,987 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:16,987 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-10-21T14:31:16,987 | ^~ ~~~~~~~~~~~ 2025-10-21T14:31:16,987 command_set.c:165:25: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:16,987 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-10-21T14:31:16,987 | ^~~~~~~~~~~~~~~~ 2025-10-21T14:31:16,987 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-10-21T14:31:16,987 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-10-21T14:31:16,987 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:16,987 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:16,987 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-10-21T14:31:16,988 | ^~ ~~~~~~~~~~~ 2025-10-21T14:31:16,988 command_set.c:169:25: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:16,988 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-10-21T14:31:16,988 | ^~~~~~~~~~ 2025-10-21T14:31:16,988 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-10-21T14:31:16,988 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-10-21T14:31:16,988 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:16,988 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:16,988 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-10-21T14:31:16,988 | ^~ ~~~~~~~~~~~ 2025-10-21T14:31:16,988 command_set.c:174:25: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:16,989 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-10-21T14:31:16,989 | ^~~~~~~~~~ 2025-10-21T14:31:16,989 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-10-21T14:31:16,989 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-10-21T14:31:16,989 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:16,989 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:16,989 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-10-21T14:31:16,989 | ^~ ~~~~~~~~~~~ 2025-10-21T14:31:16,989 command_set.c:187:25: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:16,989 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-10-21T14:31:16,989 | ^~~~~~~~~~~~~~~~ 2025-10-21T14:31:16,990 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-10-21T14:31:16,990 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-10-21T14:31:16,990 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:16,990 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-10-21T14:31:16,990 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-10-21T14:31:16,990 | ^ 2025-10-21T14:31:16,990 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-10-21T14:31:16,990 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-10-21T14:31:16,990 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:17,157 command_set.c: In function ‘uniq_sketch_union’: 2025-10-21T14:31:17,157 command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-10-21T14:31:17,157 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-10-21T14:31:17,157 | ^ 2025-10-21T14:31:17,157 command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2025-10-21T14:31:17,157 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-10-21T14:31:17,157 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:17,158 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-10-21T14:31:17,158 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-10-21T14:31:17,158 | ^ 2025-10-21T14:31:17,158 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-10-21T14:31:17,158 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-10-21T14:31:17,158 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:17,158 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:17,159 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-10-21T14:31:17,159 | ^~ ~~~~~~~~~~~ 2025-10-21T14:31:17,159 command_set.c:247:25: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:17,159 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-10-21T14:31:17,159 | ^~~~~~~~~~ 2025-10-21T14:31:17,159 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-10-21T14:31:17,159 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-10-21T14:31:17,159 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:17,160 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:17,160 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-10-21T14:31:17,160 | ^~ ~~~~~~~~~~~~~~~ 2025-10-21T14:31:17,160 command_set.c:259:25: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:17,160 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-10-21T14:31:17,160 | ^~~~~~~~~~ 2025-10-21T14:31:17,160 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-10-21T14:31:17,160 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-10-21T14:31:17,161 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:17,301 command_set.c: In function ‘combin_pans’: 2025-10-21T14:31:17,301 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:17,301 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-10-21T14:31:17,301 | ^~ ~~~~~~~~~~~ 2025-10-21T14:31:17,302 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2025-10-21T14:31:17,302 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-10-21T14:31:17,302 | ^~~~~~~~~~ 2025-10-21T14:31:17,302 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2025-10-21T14:31:17,302 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-10-21T14:31:17,302 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:17,303 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:17,303 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-10-21T14:31:17,303 | ^~ ~~~~~~~~~~ 2025-10-21T14:31:17,303 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2025-10-21T14:31:17,303 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-10-21T14:31:17,303 | ^~~~~~~~~~ 2025-10-21T14:31:17,303 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2025-10-21T14:31:17,303 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-10-21T14:31:17,304 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:17,304 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-10-21T14:31:17,304 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-10-21T14:31:17,305 | ^ 2025-10-21T14:31:17,305 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-10-21T14:31:17,305 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-10-21T14:31:17,305 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:17,521 command_set.c: In function ‘combin_subset_pans’: 2025-10-21T14:31:17,522 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:17,522 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-10-21T14:31:17,522 | ^~ ~~~~~~~~~~~ 2025-10-21T14:31:17,523 command_set.c:469:25: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:17,523 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-10-21T14:31:17,523 | ^~~~~~~~~~ 2025-10-21T14:31:17,523 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-10-21T14:31:17,523 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-10-21T14:31:17,524 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:17,524 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:17,524 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-10-21T14:31:17,524 | ^~ ~~~~~~~~~~ 2025-10-21T14:31:17,525 command_set.c:475:25: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:17,525 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-10-21T14:31:17,525 | ^~~~~~~~~~ 2025-10-21T14:31:17,525 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-10-21T14:31:17,525 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-10-21T14:31:17,526 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:17,526 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:17,526 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-10-21T14:31:17,527 | ^~ ~~~~~~~~~~~ 2025-10-21T14:31:17,527 command_set.c:481:25: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:17,527 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-10-21T14:31:17,527 | ^~~~~~~~~~ 2025-10-21T14:31:17,528 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-10-21T14:31:17,528 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-10-21T14:31:17,528 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:17,529 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:17,529 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-10-21T14:31:17,529 | ^~ ~~~~~~~~~~ 2025-10-21T14:31:17,529 command_set.c:512:25: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:17,529 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-10-21T14:31:17,529 | ^~~~~~~~~~ 2025-10-21T14:31:17,530 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-10-21T14:31:17,530 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-10-21T14:31:17,530 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:17,531 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-10-21T14:31:17,531 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-10-21T14:31:17,531 | ^ 2025-10-21T14:31:17,531 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-10-21T14:31:17,531 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-10-21T14:31:17,532 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:17,765 command_set.c: In function ‘grouping_genomes’: 2025-10-21T14:31:17,766 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:17,766 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-10-21T14:31:17,767 | ^~ ~~~~~~~~~~~ 2025-10-21T14:31:17,767 command_set.c:574:25: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:17,767 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-10-21T14:31:17,767 | ^~~~~~~~~~ 2025-10-21T14:31:17,768 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-10-21T14:31:17,768 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-10-21T14:31:17,768 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:17,769 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:17,769 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-10-21T14:31:17,769 | ^~ ~~~~~~~~~~ 2025-10-21T14:31:17,770 command_set.c:580:25: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:17,770 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-10-21T14:31:17,770 | ^~~~~~~~~~ 2025-10-21T14:31:17,771 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-10-21T14:31:17,771 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-10-21T14:31:17,771 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:17,772 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:17,772 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-10-21T14:31:17,772 | ^~ ~~~~~~~~~~~ 2025-10-21T14:31:17,773 command_set.c:612:25: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:17,773 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-10-21T14:31:17,773 | ^~~~~~~~~~ 2025-10-21T14:31:17,774 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-10-21T14:31:17,774 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-10-21T14:31:17,774 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:17,775 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-10-21T14:31:17,775 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-10-21T14:31:17,775 | ^~ ~~~~~~~~~~ 2025-10-21T14:31:17,776 command_set.c:634:25: note: directive argument in the range [-2147483641, 2147483646] 2025-10-21T14:31:17,776 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-10-21T14:31:17,776 | ^~~~~~~~~~ 2025-10-21T14:31:17,776 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-10-21T14:31:17,777 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-10-21T14:31:17,777 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:17,777 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-10-21T14:31:17,778 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-10-21T14:31:17,778 | ^ 2025-10-21T14:31:17,778 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-10-21T14:31:17,778 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-10-21T14:31:17,778 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-21T14:31:18,059 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-313/command_shuffle.o -fopenmp 2025-10-21T14:31:18,368 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c global_basic.c -o build/temp.linux-armv7l-cpython-313/global_basic.o -fopenmp 2025-10-21T14:31:18,546 global_basic.c: In function ‘organize_infile_list’: 2025-10-21T14:31:18,547 global_basic.c:195:20: error: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2025-10-21T14:31:18,547 195 | while (isspace(*buf)) buf++; 2025-10-21T14:31:18,547 | ^~~~~~~ 2025-10-21T14:31:18,547 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2025-10-21T14:31:18,547 34 | #include 2025-10-21T14:31:18,547 +++ |+#include 2025-10-21T14:31:18,547 35 | 2025-10-21T14:31:18,547 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-10-21T14:31:18,548 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-10-21T14:31:18,548 | ~~^ 2025-10-21T14:31:18,548 | | 2025-10-21T14:31:18,548 | long unsigned int 2025-10-21T14:31:18,548 | %u 2025-10-21T14:31:18,548 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-10-21T14:31:18,548 | ~~~~~~~~~~~ 2025-10-21T14:31:18,548 | | 2025-10-21T14:31:18,548 | size_t {aka unsigned int} 2025-10-21T14:31:18,549 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-10-21T14:31:18,549 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-10-21T14:31:18,549 | ~~^ 2025-10-21T14:31:18,549 | | 2025-10-21T14:31:18,550 | long unsigned int 2025-10-21T14:31:18,550 | %u 2025-10-21T14:31:18,550 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-10-21T14:31:18,550 | ~~~~~~~~~~~ 2025-10-21T14:31:18,550 | | 2025-10-21T14:31:18,550 | size_t {aka unsigned int} 2025-10-21T14:31:18,569 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-10-21T14:31:18,723 ERROR: python setup.py bdist_wheel exited with 1 2025-10-21T14:31:18,735 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2025-10-21T14:31:18,735 exec(compile('"'"''"'"''"'"' 2025-10-21T14:31:18,735 # This is -- a caller that pip uses to run setup.py 2025-10-21T14:31:18,735 # 2025-10-21T14:31:18,735 # - It imports setuptools before invoking setup.py, to enable projects that directly 2025-10-21T14:31:18,735 # import from `distutils.core` to work with newer packaging standards. 2025-10-21T14:31:18,735 # - It provides a clear error message when setuptools is not installed. 2025-10-21T14:31:18,735 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2025-10-21T14:31:18,735 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2025-10-21T14:31:18,735 # manifest_maker: standard file '"'"'-c'"'"' not found". 2025-10-21T14:31:18,735 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2025-10-21T14:31:18,735 import os, sys, tokenize, traceback 2025-10-21T14:31:18,735 2025-10-21T14:31:18,735 try: 2025-10-21T14:31:18,735 import setuptools 2025-10-21T14:31:18,735 except ImportError: 2025-10-21T14:31:18,735 print( 2025-10-21T14:31:18,735 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2025-10-21T14:31:18,735 "the build environment with exception:", 2025-10-21T14:31:18,735 file=sys.stderr, 2025-10-21T14:31:18,735 ) 2025-10-21T14:31:18,735 traceback.print_exc() 2025-10-21T14:31:18,735 sys.exit(1) 2025-10-21T14:31:18,735 2025-10-21T14:31:18,735 __file__ = %r 2025-10-21T14:31:18,735 sys.argv[0] = __file__ 2025-10-21T14:31:18,735 2025-10-21T14:31:18,735 if os.path.exists(__file__): 2025-10-21T14:31:18,735 filename = __file__ 2025-10-21T14:31:18,735 with tokenize.open(__file__) as f: 2025-10-21T14:31:18,735 setup_py_code = f.read() 2025-10-21T14:31:18,735 else: 2025-10-21T14:31:18,735 filename = "" 2025-10-21T14:31:18,735 setup_py_code = "from setuptools import setup; setup()" 2025-10-21T14:31:18,735 2025-10-21T14:31:18,735 exec(compile(setup_py_code, filename, "exec")) 2025-10-21T14:31:18,735 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-2pis4xkw/kssdtree_f9d92bcd8d7b4fcc9f582043ceca7ee2/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-mx84_9pa[/] 2025-10-21T14:31:18,736 [bold magenta]cwd[/]: /tmp/pip-wheel-2pis4xkw/kssdtree_f9d92bcd8d7b4fcc9f582043ceca7ee2/ 2025-10-21T14:31:18,736 Building wheel for kssdtree (setup.py): finished with status 'error' 2025-10-21T14:31:18,737 ERROR: Failed building wheel for kssdtree 2025-10-21T14:31:18,737 Running setup.py clean for kssdtree 2025-10-21T14:31:18,738 Running command python setup.py clean 2025-10-21T14:31:19,922 running clean 2025-10-21T14:31:20,067 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2025-10-21T14:31:20,067 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2025-10-21T14:31:20,068 'build/bdist.linux-armv7l' does not exist -- can't clean it 2025-10-21T14:31:20,068 'build/scripts-3.13' does not exist -- can't clean it 2025-10-21T14:31:20,068 removing 'build' 2025-10-21T14:31:20,176 Failed to build kssdtree 2025-10-21T14:31:20,177 ERROR: Failed to build one or more wheels 2025-10-21T14:31:20,178 Exception information: 2025-10-21T14:31:20,178 Traceback (most recent call last): 2025-10-21T14:31:20,178 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2025-10-21T14:31:20,178 status = _inner_run() 2025-10-21T14:31:20,178 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2025-10-21T14:31:20,178 return self.run(options, args) 2025-10-21T14:31:20,178 ~~~~~~~~^^^^^^^^^^^^^^^ 2025-10-21T14:31:20,178 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2025-10-21T14:31:20,178 return func(self, options, args) 2025-10-21T14:31:20,178 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2025-10-21T14:31:20,178 raise CommandError("Failed to build one or more wheels") 2025-10-21T14:31:20,178 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-10-21T14:31:20,183 Removed build tracker: '/tmp/pip-build-tracker-vm323wy3'