2025-10-23T04:58:02,319 Created temporary directory: /tmp/pip-ephem-wheel-cache-1hxd5gtw 2025-10-23T04:58:02,321 Created temporary directory: /tmp/pip-build-tracker-8afb3jio 2025-10-23T04:58:02,322 Initialized build tracking at /tmp/pip-build-tracker-8afb3jio 2025-10-23T04:58:02,322 Created build tracker: /tmp/pip-build-tracker-8afb3jio 2025-10-23T04:58:02,323 Entered build tracker: /tmp/pip-build-tracker-8afb3jio 2025-10-23T04:58:02,323 Created temporary directory: /tmp/pip-wheel-4wphlzvo 2025-10-23T04:58:02,327 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-23T04:58:02,329 Created temporary directory: /tmp/pip-ephem-wheel-cache-2nbb8v56 2025-10-23T04:58:02,350 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-23T04:58:02,354 2 location(s) to search for versions of netam: 2025-10-23T04:58:02,354 * https://pypi.org/simple/netam/ 2025-10-23T04:58:02,354 * https://www.piwheels.org/simple/netam/ 2025-10-23T04:58:02,355 Fetching project page and analyzing links: https://pypi.org/simple/netam/ 2025-10-23T04:58:02,356 Getting page https://pypi.org/simple/netam/ 2025-10-23T04:58:02,357 Found index url https://pypi.org/simple 2025-10-23T04:58:02,625 Fetched page https://pypi.org/simple/netam/ as application/vnd.pypi.simple.v1+json 2025-10-23T04:58:02,628 Skipping link: No binaries permitted for netam: https://files.pythonhosted.org/packages/88/e5/f60c6c996af0140bf8d10614b33daf5174710d8f74391c5e75dcbad593fe/netam-0.0.0-py3-none-any.whl (from https://pypi.org/simple/netam/) (requires-python:<3.14,>=3.9) 2025-10-23T04:58:02,629 Found link https://files.pythonhosted.org/packages/dd/ca/0cfb658ffa6cc1fa6f1e331337227d73264edfd628b8b8592ef371fbe060/netam-0.0.0.tar.gz (from https://pypi.org/simple/netam/) (requires-python:<3.14,>=3.9), version: 0.0.0 2025-10-23T04:58:02,629 Skipping link: No binaries permitted for netam: https://files.pythonhosted.org/packages/cb/3d/911053d8211735ccb7777cfea147558a0538ccbb62f6fa190953f94b9d25/netam-0.2.0-py3-none-any.whl (from https://pypi.org/simple/netam/) (requires-python:<3.12,>=3.8) 2025-10-23T04:58:02,631 Found link https://files.pythonhosted.org/packages/59/4d/4282d52ccfe6238e0f1111fdce48f18e15e4050595e3da182a710c434f58/netam-0.2.0.tar.gz (from https://pypi.org/simple/netam/) (requires-python:<3.12,>=3.8), version: 0.2.0 2025-10-23T04:58:02,631 Skipping link: No binaries permitted for netam: https://files.pythonhosted.org/packages/02/1e/77a7e0cb9bf438649efb9deb5cb687bf5e467e5904c619f3159ec63cb17c/netam-0.2.1-py3-none-any.whl (from https://pypi.org/simple/netam/) (requires-python:<3.12,>=3.9) 2025-10-23T04:58:02,632 Found link https://files.pythonhosted.org/packages/d1/fb/ca9720cd9c44ad9a022e30ffc6966effd44459dcd4e6be774b020b4e57d3/netam-0.2.1.tar.gz (from https://pypi.org/simple/netam/) (requires-python:<3.12,>=3.9), version: 0.2.1 2025-10-23T04:58:02,633 Fetching project page and analyzing links: https://www.piwheels.org/simple/netam/ 2025-10-23T04:58:02,634 Getting page https://www.piwheels.org/simple/netam/ 2025-10-23T04:58:02,635 Found index url https://www.piwheels.org/simple 2025-10-23T04:58:02,821 Fetched page https://www.piwheels.org/simple/netam/ as text/html 2025-10-23T04:58:02,824 Skipping link: No binaries permitted for netam: https://archive1.piwheels.org/simple/netam/netam-0.2.1-py3-none-any.whl#sha256=f6f9eda28b40bc48aa9e62a730c2a0e157d9019e7387d3842489d7aabd19195d (from https://www.piwheels.org/simple/netam/) (requires-python:>=3.9,<3.12) 2025-10-23T04:58:02,825 Skipping link: No binaries permitted for netam: https://archive1.piwheels.org/simple/netam/netam-0.2.0-py3-none-any.whl#sha256=a2182829d2a51205d8799e8e8ab739fe2997de41689c0ffb0bd565c23531659e (from https://www.piwheels.org/simple/netam/) (requires-python:>=3.8,<3.12) 2025-10-23T04:58:02,826 Skipping link: not a file: https://www.piwheels.org/simple/netam/ 2025-10-23T04:58:02,827 Skipping link: not a file: https://pypi.org/simple/netam/ 2025-10-23T04:58:02,855 Given no hashes to check 1 links for project 'netam': discarding no candidates 2025-10-23T04:58:02,873 Collecting netam==0.0.0 2025-10-23T04:58:02,875 Created temporary directory: /tmp/pip-unpack-a2p4ha_q 2025-10-23T04:58:03,026 Downloading netam-0.0.0.tar.gz (1.3 MB) 2025-10-23T04:58:03,433 Added netam==0.0.0 from https://files.pythonhosted.org/packages/dd/ca/0cfb658ffa6cc1fa6f1e331337227d73264edfd628b8b8592ef371fbe060/netam-0.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-8afb3jio' 2025-10-23T04:58:03,440 Created temporary directory: /tmp/pip-build-env-qqnhfu0w 2025-10-23T04:58:03,445 Installing build dependencies: started 2025-10-23T04:58:03,446 Running command pip subprocess to install build dependencies 2025-10-23T04:58:04,842 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-10-23T04:58:05,429 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-23T04:58:05,453 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-23T04:58:07,222 Collecting setuptools>=64 2025-10-23T04:58:07,320 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-10-23T04:58:07,606 Collecting wheel 2025-10-23T04:58:07,623 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2025-10-23T04:58:07,955 Collecting setuptools-scm>=8 2025-10-23T04:58:07,972 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2025-10-23T04:58:08,170 Collecting packaging>=20 2025-10-23T04:58:08,187 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2025-10-23T04:58:11,294 Installing collected packages: wheel, setuptools, packaging, setuptools-scm 2025-10-23T04:58:11,550 Creating /tmp/pip-build-env-qqnhfu0w/overlay/local/bin 2025-10-23T04:58:11,552 changing mode of /tmp/pip-build-env-qqnhfu0w/overlay/local/bin/wheel to 755 2025-10-23T04:58:16,051 changing mode of /tmp/pip-build-env-qqnhfu0w/overlay/local/bin/setuptools-scm to 755 2025-10-23T04:58:16,080 Successfully installed packaging-25.0 setuptools-80.9.0 setuptools-scm-9.2.2 wheel-0.45.1 2025-10-23T04:58:16,381 Installing build dependencies: finished with status 'done' 2025-10-23T04:58:16,388 Getting requirements to build wheel: started 2025-10-23T04:58:16,390 Running command Getting requirements to build wheel 2025-10-23T04:58:17,043 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-10-23T04:58:17,076 /tmp/pip-build-env-qqnhfu0w/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-23T04:58:17,077 !! 2025-10-23T04:58:17,078 ******************************************************************************** 2025-10-23T04:58:17,079 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-23T04:58:17,080 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-23T04:58:17,081 or your builds will no longer be supported. 2025-10-23T04:58:17,082 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-23T04:58:17,083 ******************************************************************************** 2025-10-23T04:58:17,085 !! 2025-10-23T04:58:17,085 corresp(dist, value, root_dir) 2025-10-23T04:58:17,172 /tmp/pip-build-env-qqnhfu0w/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-23T04:58:17,172 !! 2025-10-23T04:58:17,173 ******************************************************************************** 2025-10-23T04:58:17,174 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-23T04:58:17,175 License :: OSI Approved :: MIT License 2025-10-23T04:58:17,176 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-23T04:58:17,177 ******************************************************************************** 2025-10-23T04:58:17,178 !! 2025-10-23T04:58:17,178 dist._finalize_license_expression() 2025-10-23T04:58:17,179 /tmp/pip-build-env-qqnhfu0w/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-23T04:58:17,180 !! 2025-10-23T04:58:17,181 ******************************************************************************** 2025-10-23T04:58:17,181 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-23T04:58:17,182 License :: OSI Approved :: MIT License 2025-10-23T04:58:17,183 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-23T04:58:17,184 ******************************************************************************** 2025-10-23T04:58:17,185 !! 2025-10-23T04:58:17,186 self._finalize_license_expression() 2025-10-23T04:58:17,186 running egg_info 2025-10-23T04:58:17,193 writing netam.egg-info/PKG-INFO 2025-10-23T04:58:17,199 writing dependency_links to netam.egg-info/dependency_links.txt 2025-10-23T04:58:17,201 writing entry points to netam.egg-info/entry_points.txt 2025-10-23T04:58:17,205 writing requirements to netam.egg-info/requires.txt 2025-10-23T04:58:17,206 writing top-level names to netam.egg-info/top_level.txt 2025-10-23T04:58:17,260 listing git files failed - pretending there aren't any 2025-10-23T04:58:17,268 reading manifest file 'netam.egg-info/SOURCES.txt' 2025-10-23T04:58:17,283 adding license file 'LICENSE' 2025-10-23T04:58:17,294 writing manifest file 'netam.egg-info/SOURCES.txt' 2025-10-23T04:58:17,400 Getting requirements to build wheel: finished with status 'done' 2025-10-23T04:58:17,403 Created temporary directory: /tmp/pip-modern-metadata-new4t6sd 2025-10-23T04:58:17,406 Preparing metadata (pyproject.toml): started 2025-10-23T04:58:17,407 Running command Preparing metadata (pyproject.toml) 2025-10-23T04:58:18,000 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-10-23T04:58:18,031 /tmp/pip-build-env-qqnhfu0w/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-23T04:58:18,032 !! 2025-10-23T04:58:18,033 ******************************************************************************** 2025-10-23T04:58:18,034 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-23T04:58:18,035 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-23T04:58:18,036 or your builds will no longer be supported. 2025-10-23T04:58:18,037 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-23T04:58:18,038 ******************************************************************************** 2025-10-23T04:58:18,039 !! 2025-10-23T04:58:18,040 corresp(dist, value, root_dir) 2025-10-23T04:58:18,122 /tmp/pip-build-env-qqnhfu0w/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-23T04:58:18,122 !! 2025-10-23T04:58:18,124 ******************************************************************************** 2025-10-23T04:58:18,124 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-23T04:58:18,125 License :: OSI Approved :: MIT License 2025-10-23T04:58:18,126 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-23T04:58:18,127 ******************************************************************************** 2025-10-23T04:58:18,128 !! 2025-10-23T04:58:18,129 dist._finalize_license_expression() 2025-10-23T04:58:18,129 /tmp/pip-build-env-qqnhfu0w/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-23T04:58:18,130 !! 2025-10-23T04:58:18,131 ******************************************************************************** 2025-10-23T04:58:18,131 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-23T04:58:18,132 License :: OSI Approved :: MIT License 2025-10-23T04:58:18,133 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-23T04:58:18,133 ******************************************************************************** 2025-10-23T04:58:18,135 !! 2025-10-23T04:58:18,135 self._finalize_license_expression() 2025-10-23T04:58:18,137 running dist_info 2025-10-23T04:58:18,153 creating /tmp/pip-modern-metadata-new4t6sd/netam.egg-info 2025-10-23T04:58:18,154 writing /tmp/pip-modern-metadata-new4t6sd/netam.egg-info/PKG-INFO 2025-10-23T04:58:18,161 writing dependency_links to /tmp/pip-modern-metadata-new4t6sd/netam.egg-info/dependency_links.txt 2025-10-23T04:58:18,163 writing entry points to /tmp/pip-modern-metadata-new4t6sd/netam.egg-info/entry_points.txt 2025-10-23T04:58:18,167 writing requirements to /tmp/pip-modern-metadata-new4t6sd/netam.egg-info/requires.txt 2025-10-23T04:58:18,168 writing top-level names to /tmp/pip-modern-metadata-new4t6sd/netam.egg-info/top_level.txt 2025-10-23T04:58:18,169 writing manifest file '/tmp/pip-modern-metadata-new4t6sd/netam.egg-info/SOURCES.txt' 2025-10-23T04:58:18,222 listing git files failed - pretending there aren't any 2025-10-23T04:58:18,229 reading manifest file '/tmp/pip-modern-metadata-new4t6sd/netam.egg-info/SOURCES.txt' 2025-10-23T04:58:18,232 adding license file 'LICENSE' 2025-10-23T04:58:18,236 writing manifest file '/tmp/pip-modern-metadata-new4t6sd/netam.egg-info/SOURCES.txt' 2025-10-23T04:58:18,237 creating '/tmp/pip-modern-metadata-new4t6sd/netam-0.0.0.dist-info' 2025-10-23T04:58:18,386 Preparing metadata (pyproject.toml): finished with status 'done' 2025-10-23T04:58:18,391 Source in /tmp/pip-wheel-4wphlzvo/netam_8304281c86b647bfab82bbe6f9d60a92 has version 0.0.0, which satisfies requirement netam==0.0.0 from https://files.pythonhosted.org/packages/dd/ca/0cfb658ffa6cc1fa6f1e331337227d73264edfd628b8b8592ef371fbe060/netam-0.0.0.tar.gz 2025-10-23T04:58:18,392 Removed netam==0.0.0 from https://files.pythonhosted.org/packages/dd/ca/0cfb658ffa6cc1fa6f1e331337227d73264edfd628b8b8592ef371fbe060/netam-0.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-8afb3jio' 2025-10-23T04:58:18,398 Created temporary directory: /tmp/pip-unpack-ipbxujtf 2025-10-23T04:58:18,399 Building wheels for collected packages: netam 2025-10-23T04:58:18,404 Created temporary directory: /tmp/pip-wheel-zdj3ukf2 2025-10-23T04:58:18,404 Destination directory: /tmp/pip-wheel-zdj3ukf2 2025-10-23T04:58:18,406 Building wheel for netam (pyproject.toml): started 2025-10-23T04:58:18,408 Running command Building wheel for netam (pyproject.toml) 2025-10-23T04:58:18,989 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-10-23T04:58:19,018 /tmp/pip-build-env-qqnhfu0w/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-23T04:58:19,019 !! 2025-10-23T04:58:19,020 ******************************************************************************** 2025-10-23T04:58:19,020 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-23T04:58:19,021 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-23T04:58:19,021 or your builds will no longer be supported. 2025-10-23T04:58:19,022 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-23T04:58:19,023 ******************************************************************************** 2025-10-23T04:58:19,024 !! 2025-10-23T04:58:19,024 corresp(dist, value, root_dir) 2025-10-23T04:58:19,099 /tmp/pip-build-env-qqnhfu0w/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-23T04:58:19,099 !! 2025-10-23T04:58:19,100 ******************************************************************************** 2025-10-23T04:58:19,101 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-23T04:58:19,102 License :: OSI Approved :: MIT License 2025-10-23T04:58:19,103 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-23T04:58:19,104 ******************************************************************************** 2025-10-23T04:58:19,105 !! 2025-10-23T04:58:19,106 dist._finalize_license_expression() 2025-10-23T04:58:19,106 /tmp/pip-build-env-qqnhfu0w/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-23T04:58:19,107 !! 2025-10-23T04:58:19,108 ******************************************************************************** 2025-10-23T04:58:19,109 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-23T04:58:19,110 License :: OSI Approved :: MIT License 2025-10-23T04:58:19,111 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-23T04:58:19,112 ******************************************************************************** 2025-10-23T04:58:19,113 !! 2025-10-23T04:58:19,113 self._finalize_license_expression() 2025-10-23T04:58:19,114 running bdist_wheel 2025-10-23T04:58:19,134 running build 2025-10-23T04:58:19,135 running build_py 2025-10-23T04:58:19,143 creating build/lib/netam 2025-10-23T04:58:19,146 copying netam/dnsm.py -> build/lib/netam 2025-10-23T04:58:19,148 copying netam/cli.py -> build/lib/netam 2025-10-23T04:58:19,150 copying netam/hit_class.py -> build/lib/netam 2025-10-23T04:58:19,153 copying netam/common.py -> build/lib/netam 2025-10-23T04:58:19,156 copying netam/models.py -> build/lib/netam 2025-10-23T04:58:19,159 copying netam/codon_table.py -> build/lib/netam 2025-10-23T04:58:19,161 copying netam/multihit.py -> build/lib/netam 2025-10-23T04:58:19,164 copying netam/whichmut_trainer.py -> build/lib/netam 2025-10-23T04:58:19,167 copying netam/model_factory.py -> build/lib/netam 2025-10-23T04:58:19,170 copying netam/whichmut_dataset.py -> build/lib/netam 2025-10-23T04:58:19,172 copying netam/data_format.py -> build/lib/netam 2025-10-23T04:58:19,175 copying netam/__init__.py -> build/lib/netam 2025-10-23T04:58:19,177 copying netam/pretrained.py -> build/lib/netam 2025-10-23T04:58:19,179 copying netam/molevol.py -> build/lib/netam 2025-10-23T04:58:19,182 copying netam/oe_plot.py -> build/lib/netam 2025-10-23T04:58:19,185 copying netam/dxsm.py -> build/lib/netam 2025-10-23T04:58:19,188 copying netam/hyper_burrito.py -> build/lib/netam 2025-10-23T04:58:19,190 copying netam/dasm.py -> build/lib/netam 2025-10-23T04:58:19,192 copying netam/attention_map.py -> build/lib/netam 2025-10-23T04:58:19,194 copying netam/sequences.py -> build/lib/netam 2025-10-23T04:58:19,197 copying netam/ddsm.py -> build/lib/netam 2025-10-23T04:58:19,199 copying netam/framework.py -> build/lib/netam 2025-10-23T04:58:19,202 running egg_info 2025-10-23T04:58:19,216 writing netam.egg-info/PKG-INFO 2025-10-23T04:58:19,222 writing dependency_links to netam.egg-info/dependency_links.txt 2025-10-23T04:58:19,224 writing entry points to netam.egg-info/entry_points.txt 2025-10-23T04:58:19,227 writing requirements to netam.egg-info/requires.txt 2025-10-23T04:58:19,228 writing top-level names to netam.egg-info/top_level.txt 2025-10-23T04:58:19,264 listing git files failed - pretending there aren't any 2025-10-23T04:58:19,270 reading manifest file 'netam.egg-info/SOURCES.txt' 2025-10-23T04:58:19,278 adding license file 'LICENSE' 2025-10-23T04:58:19,283 writing manifest file 'netam.egg-info/SOURCES.txt' 2025-10-23T04:58:19,286 /tmp/pip-build-env-qqnhfu0w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'netam.model_configs' is absent from the `packages` configuration. 2025-10-23T04:58:19,286 !! 2025-10-23T04:58:19,287 ******************************************************************************** 2025-10-23T04:58:19,288 ############################ 2025-10-23T04:58:19,288 # Package would be ignored # 2025-10-23T04:58:19,289 ############################ 2025-10-23T04:58:19,289 Python recognizes 'netam.model_configs' as an importable package[^1], 2025-10-23T04:58:19,290 but it is absent from setuptools' `packages` configuration. 2025-10-23T04:58:19,291 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-23T04:58:19,291 package, please make sure that 'netam.model_configs' is explicitly added 2025-10-23T04:58:19,292 to the `packages` configuration field. 2025-10-23T04:58:19,293 Alternatively, you can also rely on setuptools' discovery methods 2025-10-23T04:58:19,293 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-23T04:58:19,294 instead of `find_packages(...)`/`find:`). 2025-10-23T04:58:19,295 You can read more about "package discovery" on setuptools documentation page: 2025-10-23T04:58:19,296 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-23T04:58:19,297 If you don't want 'netam.model_configs' to be distributed and are 2025-10-23T04:58:19,297 already explicitly excluding 'netam.model_configs' via 2025-10-23T04:58:19,298 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-23T04:58:19,298 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-23T04:58:19,299 combination with a more fine grained `package-data` configuration. 2025-10-23T04:58:19,300 You can read more about "package data files" on setuptools documentation page: 2025-10-23T04:58:19,301 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-23T04:58:19,302 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-23T04:58:19,303 even if it does not contain any `.py` files. 2025-10-23T04:58:19,303 On the other hand, currently there is no concept of package data 2025-10-23T04:58:19,304 directory, all directories are treated like packages. 2025-10-23T04:58:19,305 ******************************************************************************** 2025-10-23T04:58:19,306 !! 2025-10-23T04:58:19,307 check.warn(importable) 2025-10-23T04:58:19,307 creating build/lib/netam/model_configs 2025-10-23T04:58:19,308 copying netam/model_configs/bidirectional_default.yaml -> build/lib/netam/model_configs 2025-10-23T04:58:19,308 copying netam/model_configs/parent_independent_default.yaml -> build/lib/netam/model_configs 2025-10-23T04:58:19,308 copying netam/model_configs/single_default.yaml -> build/lib/netam/model_configs 2025-10-23T04:58:19,309 copying netam/model_configs/transformer_large.yaml -> build/lib/netam/model_configs 2025-10-23T04:58:19,309 copying netam/model_configs/transformer_small.yaml -> build/lib/netam/model_configs 2025-10-23T04:58:19,318 installing to build/bdist.linux-armv7l/wheel 2025-10-23T04:58:19,319 running install 2025-10-23T04:58:19,342 running install_lib 2025-10-23T04:58:19,349 creating build/bdist.linux-armv7l/wheel 2025-10-23T04:58:19,352 creating build/bdist.linux-armv7l/wheel/netam 2025-10-23T04:58:19,353 copying build/lib/netam/dnsm.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,356 copying build/lib/netam/cli.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,358 copying build/lib/netam/hit_class.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,360 copying build/lib/netam/common.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,362 copying build/lib/netam/models.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,365 copying build/lib/netam/codon_table.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,368 copying build/lib/netam/multihit.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,370 copying build/lib/netam/whichmut_trainer.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,374 creating build/bdist.linux-armv7l/wheel/netam/model_configs 2025-10-23T04:58:19,375 copying build/lib/netam/model_configs/transformer_large.yaml -> build/bdist.linux-armv7l/wheel/./netam/model_configs 2025-10-23T04:58:19,377 copying build/lib/netam/model_configs/bidirectional_default.yaml -> build/bdist.linux-armv7l/wheel/./netam/model_configs 2025-10-23T04:58:19,379 copying build/lib/netam/model_configs/transformer_small.yaml -> build/bdist.linux-armv7l/wheel/./netam/model_configs 2025-10-23T04:58:19,381 copying build/lib/netam/model_configs/parent_independent_default.yaml -> build/bdist.linux-armv7l/wheel/./netam/model_configs 2025-10-23T04:58:19,382 copying build/lib/netam/model_configs/single_default.yaml -> build/bdist.linux-armv7l/wheel/./netam/model_configs 2025-10-23T04:58:19,384 copying build/lib/netam/model_factory.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,387 copying build/lib/netam/whichmut_dataset.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,390 copying build/lib/netam/data_format.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,392 copying build/lib/netam/__init__.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,394 copying build/lib/netam/pretrained.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,396 copying build/lib/netam/molevol.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,399 copying build/lib/netam/oe_plot.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,402 copying build/lib/netam/dxsm.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,404 copying build/lib/netam/hyper_burrito.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,407 copying build/lib/netam/dasm.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,409 copying build/lib/netam/attention_map.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,411 copying build/lib/netam/sequences.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,414 copying build/lib/netam/ddsm.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,416 copying build/lib/netam/framework.py -> build/bdist.linux-armv7l/wheel/./netam 2025-10-23T04:58:19,419 running install_egg_info 2025-10-23T04:58:19,426 Copying netam.egg-info to build/bdist.linux-armv7l/wheel/./netam-0.0.0-py3.11.egg-info 2025-10-23T04:58:19,438 running install_scripts 2025-10-23T04:58:19,450 creating build/bdist.linux-armv7l/wheel/netam-0.0.0.dist-info/WHEEL 2025-10-23T04:58:19,453 creating '/tmp/pip-wheel-zdj3ukf2/.tmp-8h8qokdt/netam-0.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-10-23T04:58:19,456 adding 'netam/__init__.py' 2025-10-23T04:58:19,457 adding 'netam/attention_map.py' 2025-10-23T04:58:19,458 adding 'netam/cli.py' 2025-10-23T04:58:19,460 adding 'netam/codon_table.py' 2025-10-23T04:58:19,463 adding 'netam/common.py' 2025-10-23T04:58:19,465 adding 'netam/dasm.py' 2025-10-23T04:58:19,466 adding 'netam/data_format.py' 2025-10-23T04:58:19,468 adding 'netam/ddsm.py' 2025-10-23T04:58:19,470 adding 'netam/dnsm.py' 2025-10-23T04:58:19,473 adding 'netam/dxsm.py' 2025-10-23T04:58:19,479 adding 'netam/framework.py' 2025-10-23T04:58:19,481 adding 'netam/hit_class.py' 2025-10-23T04:58:19,483 adding 'netam/hyper_burrito.py' 2025-10-23T04:58:19,485 adding 'netam/model_factory.py' 2025-10-23T04:58:19,490 adding 'netam/models.py' 2025-10-23T04:58:19,494 adding 'netam/molevol.py' 2025-10-23T04:58:19,497 adding 'netam/multihit.py' 2025-10-23T04:58:19,502 adding 'netam/oe_plot.py' 2025-10-23T04:58:19,504 adding 'netam/pretrained.py' 2025-10-23T04:58:19,507 adding 'netam/sequences.py' 2025-10-23T04:58:19,509 adding 'netam/whichmut_dataset.py' 2025-10-23T04:58:19,513 adding 'netam/whichmut_trainer.py' 2025-10-23T04:58:19,515 adding 'netam/model_configs/bidirectional_default.yaml' 2025-10-23T04:58:19,516 adding 'netam/model_configs/parent_independent_default.yaml' 2025-10-23T04:58:19,517 adding 'netam/model_configs/single_default.yaml' 2025-10-23T04:58:19,519 adding 'netam/model_configs/transformer_large.yaml' 2025-10-23T04:58:19,520 adding 'netam/model_configs/transformer_small.yaml' 2025-10-23T04:58:19,523 adding 'netam-0.0.0.dist-info/licenses/LICENSE' 2025-10-23T04:58:19,524 adding 'netam-0.0.0.dist-info/METADATA' 2025-10-23T04:58:19,525 adding 'netam-0.0.0.dist-info/WHEEL' 2025-10-23T04:58:19,526 adding 'netam-0.0.0.dist-info/entry_points.txt' 2025-10-23T04:58:19,527 adding 'netam-0.0.0.dist-info/top_level.txt' 2025-10-23T04:58:19,528 adding 'netam-0.0.0.dist-info/RECORD' 2025-10-23T04:58:19,531 removing build/bdist.linux-armv7l/wheel 2025-10-23T04:58:19,648 Building wheel for netam (pyproject.toml): finished with status 'done' 2025-10-23T04:58:19,655 Created wheel for netam: filename=netam-0.0.0-py3-none-any.whl size=103002 sha256=b00f0dbb8256d4d3b35cba3cb15077e237bbaba69fefe212d4a6970970a05d41 2025-10-23T04:58:19,656 Stored in directory: /tmp/pip-ephem-wheel-cache-2nbb8v56/wheels/8f/e1/74/e8a6580209ce39953abbdda4a544f50f56e5bbb33e44357c54 2025-10-23T04:58:19,668 Successfully built netam 2025-10-23T04:58:19,675 Removed build tracker: '/tmp/pip-build-tracker-8afb3jio'