2025-10-24T00:35:05,553 Created temporary directory: /tmp/pip-ephem-wheel-cache-aa_eeuox 2025-10-24T00:35:05,555 Created temporary directory: /tmp/pip-build-tracker-mwjwsy7e 2025-10-24T00:35:05,555 Initialized build tracking at /tmp/pip-build-tracker-mwjwsy7e 2025-10-24T00:35:05,556 Created build tracker: /tmp/pip-build-tracker-mwjwsy7e 2025-10-24T00:35:05,556 Entered build tracker: /tmp/pip-build-tracker-mwjwsy7e 2025-10-24T00:35:05,557 Created temporary directory: /tmp/pip-wheel-qcp68eb6 2025-10-24T00:35:05,560 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://archive1.piwheels.org/simple/rnapolis/RNApolis-0.0.3-py3-none-any.whl#sha256=1c57dc38a33c0d7fc3e7e0474a5df8c9bcccb634073a7338006da23faf506da2 (from https://www.piwheels.org/simple/rnapolis/) 2025-10-24T00:35:06,165 Skipping link: No binaries permitted for rnapolis: https://archive1.piwheels.org/simple/rnapolis/RNApolis-0.0.1-py3-none-any.whl#sha256=d31b368d8b29ee7bef0f5d81b066aea46724c4d516dbd154e3c305dfcfca560c (from https://www.piwheels.org/simple/rnapolis/) 2025-10-24T00:35:06,165 Skipping link: not a file: https://www.piwheels.org/simple/rnapolis/ 2025-10-24T00:35:06,166 Skipping link: not a file: https://pypi.org/simple/rnapolis/ 2025-10-24T00:35:06,195 Given no hashes to check 1 links for project 'rnapolis': discarding no candidates 2025-10-24T00:35:06,213 Collecting rnapolis==0.10.4 2025-10-24T00:35:06,215 Created temporary directory: /tmp/pip-unpack-ko7wwac_ 2025-10-24T00:35:06,349 Downloading rnapolis-0.10.4.tar.gz (696 kB) 2025-10-24T00:35:06,793 Added rnapolis==0.10.4 from https://files.pythonhosted.org/packages/4b/d1/7bb1f5e4088c60a7746b7d3c1e7f1f6b128d33b396e0f567af8aca569498/rnapolis-0.10.4.tar.gz to build tracker '/tmp/pip-build-tracker-mwjwsy7e' 2025-10-24T00:35:06,797 Created temporary directory: /tmp/pip-build-env-j5yek55y 2025-10-24T00:35:06,801 Installing build dependencies: started 2025-10-24T00:35:06,802 Running command pip subprocess to install build dependencies 2025-10-24T00:35:07,922 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-10-24T00:35:08,516 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-24T00:35:08,538 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-24T00:35:10,248 Collecting setuptools>=61.0 2025-10-24T00:35:10,333 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-10-24T00:35:13,185 Installing collected packages: setuptools 2025-10-24T00:35:16,698 Successfully installed setuptools-80.9.0 2025-10-24T00:35:16,959 Installing build dependencies: finished with status 'done' 2025-10-24T00:35:16,966 Getting requirements to build wheel: started 2025-10-24T00:35:16,967 Running command Getting requirements to build wheel 2025-10-24T00:35:17,533 /tmp/pip-build-env-j5yek55y/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-24T00:35:17,533 !! 2025-10-24T00:35:17,534 ******************************************************************************** 2025-10-24T00:35:17,535 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-24T00:35:17,536 License :: OSI Approved :: MIT License 2025-10-24T00:35:17,537 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-24T00:35:17,538 ******************************************************************************** 2025-10-24T00:35:17,539 !! 2025-10-24T00:35:17,540 self._finalize_license_expression() 2025-10-24T00:35:17,558 running egg_info 2025-10-24T00:35:17,565 writing src/RNApolis.egg-info/PKG-INFO 2025-10-24T00:35:17,570 writing dependency_links to src/RNApolis.egg-info/dependency_links.txt 2025-10-24T00:35:17,572 writing entry points to src/RNApolis.egg-info/entry_points.txt 2025-10-24T00:35:17,574 writing requirements to src/RNApolis.egg-info/requires.txt 2025-10-24T00:35:17,575 writing top-level names to src/RNApolis.egg-info/top_level.txt 2025-10-24T00:35:17,605 reading manifest file 'src/RNApolis.egg-info/SOURCES.txt' 2025-10-24T00:35:17,610 adding license file 'LICENSE' 2025-10-24T00:35:17,614 writing manifest file 'src/RNApolis.egg-info/SOURCES.txt' 2025-10-24T00:35:17,701 Getting requirements to build wheel: finished with status 'done' 2025-10-24T00:35:17,704 Created temporary directory: /tmp/pip-modern-metadata-8wzgc97u 2025-10-24T00:35:17,706 Preparing metadata (pyproject.toml): started 2025-10-24T00:35:17,707 Running command Preparing metadata (pyproject.toml) 2025-10-24T00:35:18,241 /tmp/pip-build-env-j5yek55y/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-24T00:35:18,242 !! 2025-10-24T00:35:18,243 ******************************************************************************** 2025-10-24T00:35:18,243 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-24T00:35:18,245 License :: OSI Approved :: MIT License 2025-10-24T00:35:18,246 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-24T00:35:18,247 ******************************************************************************** 2025-10-24T00:35:18,248 !! 2025-10-24T00:35:18,248 self._finalize_license_expression() 2025-10-24T00:35:18,270 running dist_info 2025-10-24T00:35:18,282 creating /tmp/pip-modern-metadata-8wzgc97u/RNApolis.egg-info 2025-10-24T00:35:18,283 writing /tmp/pip-modern-metadata-8wzgc97u/RNApolis.egg-info/PKG-INFO 2025-10-24T00:35:18,287 writing dependency_links to /tmp/pip-modern-metadata-8wzgc97u/RNApolis.egg-info/dependency_links.txt 2025-10-24T00:35:18,289 writing entry points to /tmp/pip-modern-metadata-8wzgc97u/RNApolis.egg-info/entry_points.txt 2025-10-24T00:35:18,291 writing requirements to /tmp/pip-modern-metadata-8wzgc97u/RNApolis.egg-info/requires.txt 2025-10-24T00:35:18,292 writing top-level names to /tmp/pip-modern-metadata-8wzgc97u/RNApolis.egg-info/top_level.txt 2025-10-24T00:35:18,293 writing manifest file '/tmp/pip-modern-metadata-8wzgc97u/RNApolis.egg-info/SOURCES.txt' 2025-10-24T00:35:18,320 reading manifest file '/tmp/pip-modern-metadata-8wzgc97u/RNApolis.egg-info/SOURCES.txt' 2025-10-24T00:35:18,323 adding license file 'LICENSE' 2025-10-24T00:35:18,326 writing manifest file '/tmp/pip-modern-metadata-8wzgc97u/RNApolis.egg-info/SOURCES.txt' 2025-10-24T00:35:18,327 creating '/tmp/pip-modern-metadata-8wzgc97u/rnapolis-0.10.4.dist-info' 2025-10-24T00:35:18,471 Preparing metadata (pyproject.toml): finished with status 'done' 2025-10-24T00:35:18,480 Source in /tmp/pip-wheel-qcp68eb6/rnapolis_d3e722891f404935820c86d2e4cfaadd has version 0.10.4, which satisfies requirement rnapolis==0.10.4 from https://files.pythonhosted.org/packages/4b/d1/7bb1f5e4088c60a7746b7d3c1e7f1f6b128d33b396e0f567af8aca569498/rnapolis-0.10.4.tar.gz 2025-10-24T00:35:18,481 Removed rnapolis==0.10.4 from https://files.pythonhosted.org/packages/4b/d1/7bb1f5e4088c60a7746b7d3c1e7f1f6b128d33b396e0f567af8aca569498/rnapolis-0.10.4.tar.gz from build tracker '/tmp/pip-build-tracker-mwjwsy7e' 2025-10-24T00:35:18,493 Created temporary directory: /tmp/pip-unpack-zvim3hty 2025-10-24T00:35:18,494 Building wheels for collected packages: rnapolis 2025-10-24T00:35:18,498 Created temporary directory: /tmp/pip-wheel-4mmqr0vr 2025-10-24T00:35:18,499 Destination directory: /tmp/pip-wheel-4mmqr0vr 2025-10-24T00:35:18,501 Building wheel for rnapolis (pyproject.toml): started 2025-10-24T00:35:18,502 Running command Building wheel for rnapolis (pyproject.toml) 2025-10-24T00:35:19,018 /tmp/pip-build-env-j5yek55y/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-24T00:35:19,019 !! 2025-10-24T00:35:19,020 ******************************************************************************** 2025-10-24T00:35:19,020 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-24T00:35:19,021 License :: OSI Approved :: MIT License 2025-10-24T00:35:19,023 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-24T00:35:19,023 ******************************************************************************** 2025-10-24T00:35:19,024 !! 2025-10-24T00:35:19,025 self._finalize_license_expression() 2025-10-24T00:35:19,050 running bdist_wheel 2025-10-24T00:35:19,080 running build 2025-10-24T00:35:19,081 running build_py 2025-10-24T00:35:19,091 creating build/lib/rnapolis 2025-10-24T00:35:19,093 copying src/rnapolis/parser.py -> build/lib/rnapolis 2025-10-24T00:35:19,096 copying src/rnapolis/adapter.py -> build/lib/rnapolis 2025-10-24T00:35:19,099 copying src/rnapolis/tertiary_v2.py -> build/lib/rnapolis 2025-10-24T00:35:19,102 copying src/rnapolis/rfam_folder.py -> build/lib/rnapolis 2025-10-24T00:35:19,104 copying src/rnapolis/metareader.py -> build/lib/rnapolis 2025-10-24T00:35:19,106 copying src/rnapolis/aligner.py -> build/lib/rnapolis 2025-10-24T00:35:19,108 copying src/rnapolis/common.py -> build/lib/rnapolis 2025-10-24T00:35:19,111 copying src/rnapolis/util.py -> build/lib/rnapolis 2025-10-24T00:35:19,112 copying src/rnapolis/tertiary.py -> build/lib/rnapolis 2025-10-24T00:35:19,115 copying src/rnapolis/annotator.py -> build/lib/rnapolis 2025-10-24T00:35:19,118 copying src/rnapolis/motif_extractor.py -> build/lib/rnapolis 2025-10-24T00:35:19,119 copying src/rnapolis/transformer.py -> build/lib/rnapolis 2025-10-24T00:35:19,121 copying src/rnapolis/splitter.py -> build/lib/rnapolis 2025-10-24T00:35:19,123 copying src/rnapolis/parser_v2.py -> build/lib/rnapolis 2025-10-24T00:35:19,126 copying src/rnapolis/clashfinder.py -> build/lib/rnapolis 2025-10-24T00:35:19,128 copying src/rnapolis/unifier.py -> build/lib/rnapolis 2025-10-24T00:35:19,130 copying src/rnapolis/molecule_filter.py -> build/lib/rnapolis 2025-10-24T00:35:19,132 copying src/rnapolis/distiller.py -> build/lib/rnapolis 2025-10-24T00:35:19,134 running egg_info 2025-10-24T00:35:19,146 writing src/RNApolis.egg-info/PKG-INFO 2025-10-24T00:35:19,150 writing dependency_links to src/RNApolis.egg-info/dependency_links.txt 2025-10-24T00:35:19,152 writing entry points to src/RNApolis.egg-info/entry_points.txt 2025-10-24T00:35:19,153 writing requirements to src/RNApolis.egg-info/requires.txt 2025-10-24T00:35:19,154 writing top-level names to src/RNApolis.egg-info/top_level.txt 2025-10-24T00:35:19,165 reading manifest file 'src/RNApolis.egg-info/SOURCES.txt' 2025-10-24T00:35:19,169 adding license file 'LICENSE' 2025-10-24T00:35:19,173 writing manifest file 'src/RNApolis.egg-info/SOURCES.txt' 2025-10-24T00:35:19,177 copying src/rnapolis/component_A.csv -> build/lib/rnapolis 2025-10-24T00:35:19,179 copying src/rnapolis/component_C.csv -> build/lib/rnapolis 2025-10-24T00:35:19,181 copying src/rnapolis/component_G.csv -> build/lib/rnapolis 2025-10-24T00:35:19,183 copying src/rnapolis/component_U.csv -> build/lib/rnapolis 2025-10-24T00:35:19,186 copying src/rnapolis/mmcif_pdbx_v50.dic -> build/lib/rnapolis 2025-10-24T00:35:19,292 copying src/rnapolis/py.typed -> build/lib/rnapolis 2025-10-24T00:35:19,310 installing to build/bdist.linux-armv7l/wheel 2025-10-24T00:35:19,311 running install 2025-10-24T00:35:19,335 running install_lib 2025-10-24T00:35:19,343 creating build/bdist.linux-armv7l/wheel 2025-10-24T00:35:19,346 creating build/bdist.linux-armv7l/wheel/rnapolis 2025-10-24T00:35:19,348 copying build/lib/rnapolis/parser.py -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,351 copying build/lib/rnapolis/adapter.py -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,354 copying build/lib/rnapolis/tertiary_v2.py -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,357 copying build/lib/rnapolis/rfam_folder.py -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,360 copying build/lib/rnapolis/metareader.py -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,362 copying build/lib/rnapolis/aligner.py -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,364 copying build/lib/rnapolis/common.py -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,367 copying build/lib/rnapolis/util.py -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,369 copying build/lib/rnapolis/component_A.csv -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,372 copying build/lib/rnapolis/tertiary.py -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,375 copying build/lib/rnapolis/component_U.csv -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,377 copying build/lib/rnapolis/annotator.py -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,380 copying build/lib/rnapolis/motif_extractor.py -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,382 copying build/lib/rnapolis/transformer.py -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,384 copying build/lib/rnapolis/splitter.py -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,387 copying build/lib/rnapolis/parser_v2.py -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,390 copying build/lib/rnapolis/component_G.csv -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,392 copying build/lib/rnapolis/clashfinder.py -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,394 copying build/lib/rnapolis/component_C.csv -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,397 copying build/lib/rnapolis/mmcif_pdbx_v50.dic -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,502 copying build/lib/rnapolis/unifier.py -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,504 copying build/lib/rnapolis/molecule_filter.py -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,506 copying build/lib/rnapolis/distiller.py -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,509 copying build/lib/rnapolis/py.typed -> build/bdist.linux-armv7l/wheel/./rnapolis 2025-10-24T00:35:19,510 running install_egg_info 2025-10-24T00:35:19,523 Copying src/RNApolis.egg-info to build/bdist.linux-armv7l/wheel/./RNApolis-0.10.4-py3.11.egg-info 2025-10-24T00:35:19,535 running install_scripts 2025-10-24T00:35:19,547 creating build/bdist.linux-armv7l/wheel/rnapolis-0.10.4.dist-info/WHEEL 2025-10-24T00:35:19,549 creating '/tmp/pip-wheel-4mmqr0vr/.tmp-iwpbqs4n/rnapolis-0.10.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-10-24T00:35:19,556 adding 'rnapolis/adapter.py' 2025-10-24T00:35:19,558 adding 'rnapolis/aligner.py' 2025-10-24T00:35:19,562 adding 'rnapolis/annotator.py' 2025-10-24T00:35:19,563 adding 'rnapolis/clashfinder.py' 2025-10-24T00:35:19,567 adding 'rnapolis/common.py' 2025-10-24T00:35:19,569 adding 'rnapolis/component_A.csv' 2025-10-24T00:35:19,571 adding 'rnapolis/component_C.csv' 2025-10-24T00:35:19,572 adding 'rnapolis/component_G.csv' 2025-10-24T00:35:19,574 adding 'rnapolis/component_U.csv' 2025-10-24T00:35:19,578 adding 'rnapolis/distiller.py' 2025-10-24T00:35:19,580 adding 'rnapolis/metareader.py' 2025-10-24T00:35:19,931 adding 'rnapolis/mmcif_pdbx_v50.dic' 2025-10-24T00:35:19,968 adding 'rnapolis/molecule_filter.py' 2025-10-24T00:35:19,969 adding 'rnapolis/motif_extractor.py' 2025-10-24T00:35:19,971 adding 'rnapolis/parser.py' 2025-10-24T00:35:19,976 adding 'rnapolis/parser_v2.py' 2025-10-24T00:35:19,977 adding 'rnapolis/py.typed' 2025-10-24T00:35:19,979 adding 'rnapolis/rfam_folder.py' 2025-10-24T00:35:19,981 adding 'rnapolis/splitter.py' 2025-10-24T00:35:19,985 adding 'rnapolis/tertiary.py' 2025-10-24T00:35:19,989 adding 'rnapolis/tertiary_v2.py' 2025-10-24T00:35:19,991 adding 'rnapolis/transformer.py' 2025-10-24T00:35:19,992 adding 'rnapolis/unifier.py' 2025-10-24T00:35:19,993 adding 'rnapolis/util.py' 2025-10-24T00:35:19,996 adding 'rnapolis-0.10.4.dist-info/licenses/LICENSE' 2025-10-24T00:35:19,999 adding 'rnapolis-0.10.4.dist-info/METADATA' 2025-10-24T00:35:20,001 adding 'rnapolis-0.10.4.dist-info/WHEEL' 2025-10-24T00:35:20,002 adding 'rnapolis-0.10.4.dist-info/entry_points.txt' 2025-10-24T00:35:20,002 adding 'rnapolis-0.10.4.dist-info/top_level.txt' 2025-10-24T00:35:20,004 adding 'rnapolis-0.10.4.dist-info/RECORD' 2025-10-24T00:35:20,013 removing build/bdist.linux-armv7l/wheel 2025-10-24T00:35:20,114 Building wheel for rnapolis (pyproject.toml): finished with status 'done' 2025-10-24T00:35:20,130 Created wheel for rnapolis: filename=rnapolis-0.10.4-py3-none-any.whl size=690797 sha256=e46da730b99e8f929ed9f3fec4d4a8c457244fd8651b745c26a413ec83d9a334 2025-10-24T00:35:20,132 Stored in directory: /tmp/pip-ephem-wheel-cache-4jvp8g0s/wheels/e9/66/af/18667b33f74f726135d75b6c4cb61ce0ea9c5ccf5286d567e3 2025-10-24T00:35:20,154 Successfully built rnapolis 2025-10-24T00:35:20,173 Removed build tracker: '/tmp/pip-build-tracker-mwjwsy7e'