2025-10-24T11:52:49,273 Created temporary directory: /tmp/pip-ephem-wheel-cache-rim8bzai 2025-10-24T11:52:49,275 Created temporary directory: /tmp/pip-build-tracker-6y1my_mo 2025-10-24T11:52:49,276 Initialized build tracking at /tmp/pip-build-tracker-6y1my_mo 2025-10-24T11:52:49,276 Created build tracker: /tmp/pip-build-tracker-6y1my_mo 2025-10-24T11:52:49,277 Entered build tracker: /tmp/pip-build-tracker-6y1my_mo 2025-10-24T11:52:49,278 Created temporary directory: /tmp/pip-wheel-op6fj7vb 2025-10-24T11:52:49,281 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-24T11:52:49,283 Created temporary directory: /tmp/pip-ephem-wheel-cache-q612qydk 2025-10-24T11:52:49,305 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-24T11:52:49,308 2 location(s) to search for versions of avogadro: 2025-10-24T11:52:49,308 * https://pypi.org/simple/avogadro/ 2025-10-24T11:52:49,308 * https://www.piwheels.org/simple/avogadro/ 2025-10-24T11:52:49,309 Fetching project page and analyzing links: https://pypi.org/simple/avogadro/ 2025-10-24T11:52:49,310 Getting page https://pypi.org/simple/avogadro/ 2025-10-24T11:52:49,311 Found index url https://pypi.org/simple 2025-10-24T11:52:49,530 Fetched page https://pypi.org/simple/avogadro/ as application/vnd.pypi.simple.v1+json 2025-10-24T11:52:49,561 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/c9/c5/e4a537b0ac185a15d6aaca242dbc8206d5883eeee607594f0bc37bae8521/avogadro-0.0.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,562 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ac/be/cdc616d7a849a73964edfc460e85fbc1e5e6f3d9bbfaa96db3e2db772299/avogadro-1.92.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,562 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/28/36/5c93d075449505763dc4a728263a721d4bad48b8a1e0cd89e62e12e7d7ca/avogadro-1.92.0-cp35-cp35m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,563 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/e3/71/e7f0abc1d84b897c168b4295dc3ec50825f560a2a3a56c18272982214fd1/avogadro-1.92.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,564 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/93/32/ff19acad40309b0c8c125aa5bcd757fc311ae28bcc615bc7c06fc3c212e1/avogadro-1.92.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,565 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/db/c9/f1b8603f61feabb9bbeac51e498a6ae8ed04752c17ea922fd179da52d4a5/avogadro-1.92.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,565 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/03/1f/9d3d8a9c047bca561901793e310ec4c33a2e5dd76db78f3af314b038efe1/avogadro-1.92.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,566 Skipping link: No binaries permitted for avogadro: 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2025-10-24T11:52:49,569 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/2b/e1/f28acd75b7cfe3def889be8235f87e11e7cece6e0bdb086073aeb474aac5/avogadro-1.92.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,569 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ee/b1/0619db4e5f6b8371b4a29c88eca2362b8f8f9f1acb3224a19fd751a46095/avogadro-1.92.1-cp35-cp35m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,569 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/8f/40/582451447d58cea4f223225d716984b5cb076214f4c8cfb2a49159093865/avogadro-1.92.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,570 Skipping link: No binaries permitted for avogadro: 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2025-10-24T11:52:49,572 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/2a/8b/cae46858af4743fd1bd248c4f36bb78d5f7f2b3e1d8f284285e909be9b99/avogadro-1.92.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,573 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/aa/5d/c244055385039558e4df4d04e741b9646d4b9a7631691fb81dbd25298fb1/avogadro-1.92.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,573 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ff/c8/03e4d4ad08a78592172f29f036075efbb555fae0e7502399cd20e3e0486a/avogadro-1.92.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,574 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/3e/1d/bdca7ab1054724ff985c3f172577256ca1a67d8ce8222bef1e94171e9c3e/avogadro-1.93.0-cp35-cp35m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,575 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/b0/2d/3dc13ea903ef13dd5a05864d76d97c4f67b4035ad58505295146400dc731/avogadro-1.93.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,575 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/05/59/6d387bf7463c5173ca9897ea94a6077563a1830d1d5bb43caed2d0a5b5b3/avogadro-1.93.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,576 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/98/d0/d0c8141c915ae4cd426cede045cb1b723401101766dedb6dd0b7681f569a/avogadro-1.93.1-cp35-cp35m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,577 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/52/d3/d906eb94acf266f941fdee82f89cae7607254b01657676e57642e6228807/avogadro-1.93.1-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,577 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/5f/c9/80613a8ed16927b0513554791731e1e25a44296d1135e6ea6c74aa9c0d5c/avogadro-1.93.1-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,578 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/5c/50/e6f37ba9d5e4922f24b4cb6d86e6778a4c31b766f95674b013c310371cd7/avogadro-1.93.1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,578 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/29/9f/655055b42a6ad966a19a2f135712d06c0892ce0b77aecf8552182bd30673/avogadro-1.93.1-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,579 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/3c/28/ec4d97db4b2670196d4c3e3dd16a5eea19608990042c6ba5ddf61e5e4848/avogadro-1.93.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,579 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/b8/a3/473c7cc274820b3414ca917caa7ba3244ad15d9fc86b24d1dcdf531a5dc0/avogadro-1.93.1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,580 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/d3/d6/2742a841308393d50748d4e5245710e73aa4dc26475be177d27a48f4c440/avogadro-1.93.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,580 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/4d/b1/72acce480c99a1f9c7ab0241bc944b0b1cb22ca75770345db0bd0b988fc7/avogadro-1.93.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,581 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/af/2c/6463d1bf835343c44f495e948864ef27ef75ee3c0494e4bbbd08cbc6f23a/avogadro-1.93.1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,582 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ee/ec/c7b5188a93b61db494047aa9d9af3039f7df210995bca0660a1b8e30a24d/avogadro-1.93.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,582 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/cb/d5/68c77fdc90490c8ac6ff7ef5d4432324fd9027c7a4a72e703002b0811da4/avogadro-1.93.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,583 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/98/5d/e3c489781f6be234da1b51c02f38a48bf82ad0b39a09bc4cae9cdc15c17b/avogadro-1.93.1-cp39-cp39-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,583 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/bc/af/e4f71c5231b1f83ad347731c7fb3e3c9166b3bf0c74721928eb2e4a8832f/avogadro-1.93.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,584 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/2e/e0/820de5f5219cf0415b9950e81ea8ca449ced16e729201a73e65058a75d9a/avogadro-1.95.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,585 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/1d/25/eeb12a232cc5d42f823cc70e0866ffb6a991171f0999493ace0ddd3ac6f4/avogadro-1.95.0-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,586 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/3f/5f/a461c6d6caeac009e1cefcd781af0f4b6f00dab4f4521bc0992508cda00e/avogadro-1.95.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,586 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/50/4a/6671dabded0fb43fb6d9eef591eda8138a9e42671c632bd421025e4a1a35/avogadro-1.95.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,587 Skipping link: No binaries permitted for avogadro: 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https://files.pythonhosted.org/packages/76/ff/1871991a042280b7dad93eeb6dd75c87cea969cb82cd8023ffebe46084b6/avogadro-1.95.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,591 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/26/f3/9421b93d41a6b3ff826a6a784ce18b96de3b87e65826af11afef79feb690/avogadro-1.95.1-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,592 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/8d/03/234a2653c3a51ed6f56e4342911a64fa505c8eafc9e6856be4a4db62154f/avogadro-1.95.1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,592 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/8d/d5/336ab0f8f21020e1a2ed6bd9626cba05bbe814673b9ae062d879738e273f/avogadro-1.95.1-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,593 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/12/87/594e5523c2883979471097f16c8501d01bfec57eb8d7f3d0aa180b9a8cb1/avogadro-1.95.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,594 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/89/28/ec65c40108ca37d41d60e2ad8670c9955b1140b2710cee17e24ca996d35b/avogadro-1.95.1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,594 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/fd/5f/c1e8b1847c490fc85d46ca9b6aeaeb594cfbdccf250a4ea3c7e195c70dc2/avogadro-1.95.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,595 Skipping link: No binaries permitted for avogadro: 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https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,601 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/73/cc/d585f424fdc7ba3b652a834d8b7d27ff99bdba54f94e76528bda61354674/avogadro-1.96.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,601 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/9a/a8/35575a4c7e2269c716d67ee589e018584ecd2f2c50fe2b4f87cf2dd2186b/avogadro-1.96.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,602 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/de/68/370e93a0acd04a634d466b3ef59c38fcaf24de60a690763d5548fbad8245/avogadro-1.96.0-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,603 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/51/c0/2b1ac4f02d805f0a17fc01106dd8bbd2083ab5ab12a255ef1de9a3a24cd7/avogadro-1.96.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,604 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/3e/d9/933103ef69e5e5f84b281f433d0e1c098269b243d61e789cb760a3dd35a0/avogadro-1.96.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,604 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/b9/7f/87798b9c0524125669f64297e7590596840a6444861735e133b9b4725ca7/avogadro-1.96.0-cp39-cp39-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,605 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/eb/80/7cf9e7f08ce14ac88b0ea53ec26f98dbaa85037e824a232cb34a23ff7a8b/avogadro-1.96.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,605 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/7d/b6/68410516cb433c3c1b8d3b7cd022323e3c210cb2c599d3c785ec0d50f48d/avogadro-1.97.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,606 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/0d/4a/81f3b29ce35080d3175100e951651f4131f44cee0a4fe6124c0e50e18d31/avogadro-1.97.0-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,606 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/6f/54/227250f0b076ae40e29a2ddfffcb511ba1d733bc72c751751d6bd02517f3/avogadro-1.97.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,607 Skipping link: No binaries permitted for avogadro: 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https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,610 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/12/78/aea1352ccf77243afe8da2a61034e42008f41289f458767c25994fea8426/avogadro-1.97.0-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,610 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ba/df/54c7e2d2ecae5a2717165880d840b9319dbb2c274ff2d3a8f0073e42b873/avogadro-1.97.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,611 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/96/23/daea38520f520cc94ce5ca2b86f46d63f446bc43e1344092e07a859018c6/avogadro-1.97.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,611 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/49/d8/032dbae9e1b98bf8a86f3c074c2a10677905cb503fb0ca5834a717c7195e/avogadro-1.97.0-cp39-cp39-manylinux2010_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,612 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/00/a7/dfe430e05130d59054470609e315fb256f10f48b58f12937794a4b20e45a/avogadro-1.97.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,613 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/2d/7c/44fe8e5de4b022e89f26097a0fe643f51ed12bb2757b11fbb287cdd7a28d/avogadro-1.98.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,613 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/4f/a6/d905514c22dd68000830add1832e0fbc03be127aa0b3267d9978068c07c7/avogadro-1.98.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,614 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/7f/8f/23494be85c03c83493a69287361c1076208e9527c032e722c158643f29e2/avogadro-1.98.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,614 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/79/3b/37b91da498c4c3dce14631833939514b1fbb83ce7d528d6e0c1494b1b5f3/avogadro-1.98.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,615 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/2a/fe/07a5b8592f08c23a976b77ea3c9611743fa00068ee62115d7c9eb193db76/avogadro-1.98.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,615 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/15/7c/cff6bfcafbbc7690a66dd94112dc49c472925d47173f7c417b56632d7518/avogadro-1.98.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,616 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/4c/9b/a4cf55213d62d30ca80f8e82a5734858a3d08e1d386b97385a6dc29e2dd2/avogadro-1.98.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,616 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/62/92/d6e305ca045d79fabee66ecae0687e55908bd17e82147227692a11cddb33/avogadro-1.98.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,617 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/12/e2/0b80814441074a163d22222c5e3527415e51218df1b55a352fb7cbe08606/avogadro-1.98.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,618 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/47/b1/a971fe802964cc4d468682ec83f8c91b1ef33b89322d2b117a1ee638c4ea/avogadro-1.98.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,618 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/8d/65/2913d79c19042100fcfba31fe99d616faad76352459eb61a4f8c228977c5/avogadro-1.98.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,619 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/d0/a3/668e960f47d73724d2d8fea01e87b9fce6fe4818d373313adfea2841276a/avogadro-1.98.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,619 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/0d/3b/9fe38a08493ee42a77c478a08fbca06bd5cbc86619d5ccb7abce136d9c46/avogadro-1.98.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,620 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/50/c0/d7280c6058ed95d78a9efb17b35f7750c516ecdfbe40801cf2bcd9d7ebe1/avogadro-1.98.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,621 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/78/0a/734b1fabe41627b59a53cb79fe604e726a2e51abe9a0f4017b2b6dc41dee/avogadro-1.98.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,621 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/9e/24/3577884b8ea47eab071449fb2dd5aec1bb70bea4ccbfe2c8e578d614184b/avogadro-1.98.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,622 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/e5/a7/58e1305de7a54b5739d3aee1fa9dea6b956afd50369a050fe3c70c9c1edd/avogadro-1.98.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,622 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/0d/95/4bf7fb88a5ae2013be4428c847c697cef7569b586d4b3c82ce51966f72c4/avogadro-1.98.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,623 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/7b/90/8f15c741ce8ff317ca97a2a6d21501cee30c906c088c85b35cd52f06017c/avogadro-1.98.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,623 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/99/35/98dc474ffca2ca94bf15292ea4548f35596d2ff00bb7b75cc6b0673c1dc3/avogadro-1.98.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,624 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/de/01/5363fe4e3824f147749055610d4bdd692e5a5f71ef66ed2db40de7eefadd/avogadro-1.98.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,624 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/c5/b9/da1f0b59095da66c7804223894f637c2279d0c331d0ed07c80af1fa06363/avogadro-1.98.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,625 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/87/fd/ce2d8ba692c1fc08af03277e692cef3bfa7d0132bd9b88e341f04a1857dc/avogadro-1.102.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,626 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/bb/ad/8cb1fcedd463f907aa7f4171674c20043189b06e56507911673cc554323e/avogadro-1.102.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,626 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/97/3e/7f778bd236b7880570ff0d305a420d6be139e7ccd203652c23b300d35ad8/avogadro-1.102.0-cp310-cp310-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,627 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/28/7c/66521c173517d3a866dbb686a63c67f833e5b3eaf7e607046a6730c20998/avogadro-1.102.0-cp310-cp310-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,627 Skipping link: No binaries permitted for avogadro: 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https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,630 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/e7/14/d0abf0caaa40870ba68d4639f0d9b55712b9e09404cd1671141c382403c8/avogadro-1.102.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,630 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/be/40/bb60afe162966c70b97d719b57c7fedbbe1dbb46874fa0df16bd798b0971/avogadro-1.102.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,631 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/31/f5/362f44f4150b077b6569794885e7bf1738acf71b3af36200886955e1b2d1/avogadro-1.102.0-cp311-cp311-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,631 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/e2/1b/27ea3160e4ea2c22a531732ce2c05fffa642800e81f8bb35796f9124b468/avogadro-1.102.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,632 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/94/0f/aee332e851ffcbefbcc1f412f14f17fce7a9e2b367f74ee1511dc0f5ba01/avogadro-1.102.0-cp311-cp311-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,632 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/b5/5e/56b3f5fe4a74c67d1db243f86b3cd64cb2f295cfe374d515311876aee1ab/avogadro-1.102.0-cp311-cp311-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,633 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/69/28/777ed93e64e50072f143e5411b7c0cd8aa89d50ba4e0cc7b03994e4ece6f/avogadro-1.102.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,634 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/71/57/700d678f657532eef56f9af324c028d3f871aa565c70c307cb3afb5cc5b4/avogadro-1.102.0-cp311-cp311-win_arm64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,634 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/60/f4/f53c7057f68c696e13fa1f476792bc7fa4c4f6da3e903d20e39e43495b76/avogadro-1.102.0-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,635 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/9c/1f/d8cefc3e70d3862120e24e9a65a06e9331ddd5fd9951d5f948e6286a5133/avogadro-1.102.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,636 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/14/8c/28f4e5f040e7c01ecbe958d0e9dfb483a71017126598cb55d0d449e1d093/avogadro-1.102.0-cp312-cp312-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,636 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/63/d4/a80c85902f4d227c085b390bb67f89db317844967bfc905c404cf8c05c89/avogadro-1.102.0-cp312-cp312-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,637 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/d3/c8/0615411f45644b071e080966856ec9ffb741a561ec89a29a6edf59085d50/avogadro-1.102.0-cp312-cp312-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,638 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/31/ec/e6ee18f9481233ef9b1300b3c06728cdbe0dce9cc2881124277f50d42bf2/avogadro-1.102.0-cp312-cp312-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,638 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/34/02/30da063678febd690769a8137bec0f43a81cbbb65aa006434e7a773222bf/avogadro-1.102.0-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,639 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/de/c8/5ed2653da513683cd9b2954e6ae2b234b215e6223ecdfdddca7941b243be/avogadro-1.102.0-cp312-cp312-win_arm64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,639 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/70/50/d38dcda222723ddd9c9f179a8ddf863039e39744631a86c0a0a8ebbb0e19/avogadro-1.102.0-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,640 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/3a/14/89fd7999a2726c2723252d6594bd2433b41f1fed71b625e8fa7658b7a591/avogadro-1.102.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,640 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/34/c7/cfd0d70283a9b09ef99a402abe514d7839f226627405a563dce398fd3740/avogadro-1.102.0-cp313-cp313-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,640 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/fb/de/a48dcae9b2391feca0e64cb6254d2f72453d7b0d5c6f8d4bc0858d79c63b/avogadro-1.102.0-cp313-cp313-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,641 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/3a/ba/86b6ef0f79605c0687b86d778629525ef6a93bfefe5f3cddc25fee955420/avogadro-1.102.0-cp313-cp313-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,642 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/9d/b9/b5bc4bc52de8c62ada5e9da081c34797240ff63addf7c80c17333a946b58/avogadro-1.102.0-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,642 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/dd/c8/8bd7b2df893ab7005e3cb0ff664f5adec820d3947d86b6599ba7d3133634/avogadro-1.102.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,643 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/69/ac/892986ad5a6067f298cbd801b4916ec40bb16676a11d7169f92843925756/avogadro-1.102.0-cp313-cp313-win_arm64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,644 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/cb/f3/a322e9afc9e029c3431b87b106400fd0115766d1f5b68eab9fb653690456/avogadro-1.102.0-cp314-cp314-macosx_10_15_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,644 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/33/62/a1b8b4a9825d789db7dc8b245c9bfef046b3780c58abd8a759e10d4eef37/avogadro-1.102.0-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,645 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/0c/c6/092d701b875d38fefe74e23329e1f3f4cfdca8604368725928c801a92b81/avogadro-1.102.0-cp314-cp314-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,645 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/5a/85/9f5605d88c1cd53cbdd91fe08380feb0e90886349dbc65e4e217966fc28d/avogadro-1.102.0-cp314-cp314-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,646 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/6b/6b/c8d07359c385e090f8e382b21cbbf4285e089d0a4ee26953c448ddf86e81/avogadro-1.102.0-cp314-cp314-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,647 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/d6/52/900cd1644fc160a1cd8550a4d5d6c906b37de8ddbdfa4abc360f9851294d/avogadro-1.102.0-cp314-cp314-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,647 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/97/0b/9a5e94de879dd44aff3fbb29f5a3288f26c7c37f7100310bcfabf949bc34/avogadro-1.102.0-cp314-cp314-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,648 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/a6/89/e2f17b40123aca42492b57c5d984467e0d028e22fb962702090c7eca4b36/avogadro-1.102.0-cp314-cp314-win_arm64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,648 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/14/40/fcb43123a01c1e779290f4bb1661888dd8209addf6173224693e1fee7357/avogadro-1.102.0-cp314-cp314t-macosx_10_15_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,649 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/fd/2c/e57834ecff323a69cd72be683071d506136a7ee7b0f43ac4406b35470a42/avogadro-1.102.0-cp314-cp314t-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,649 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/95/80/65d2435b8aa3bb7e90fcf1244e77260df6e2a34ba71aea6b49d2a1048ddd/avogadro-1.102.0-cp314-cp314t-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,650 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/83/e5/99cce7e325d354afcf93dc03c34f7b1fcbf0bb38a50329fe773eb8d37e7c/avogadro-1.102.0-cp314-cp314t-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,650 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/1c/8e/909a4ffdfcc3979c6bd93cd447c70830f0019bed9dbc00fd3a50d4b6a1da/avogadro-1.102.0-cp314-cp314t-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,651 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ef/21/3a81a4118efe4583f657b01ae7ad53f03824f4f12ba94f3fbda7902747be/avogadro-1.102.0-cp314-cp314t-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,652 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/47/29/7de7dc7a03ebc85c4345e31d6accd6ff2f344dbb179b5501806236b669dc/avogadro-1.102.0-cp314-cp314t-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,652 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/52/de/fdd421bb3dcfb0fa7818a22ccb5c351edd0e84e00821a479724a6925cfb6/avogadro-1.102.0-cp314-cp314t-win_arm64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,653 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/bd/ce/63acac1365cb5571f97e986ed90a16b36b2b26e57cdd427650b9fef53c02/avogadro-1.102.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,653 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/bf/a6/5c138331f4b93991198caadb33b31ae587a03cc5e12c62364bca8971cacc/avogadro-1.102.0-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,654 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/2a/18/a781d685590e604ee5b19fe2d5eec5239e13cd70ffb79212ba84bec8d846/avogadro-1.102.0-cp38-cp38-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,655 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/a1/9e/42010f509bb1af5b356119e20305924a704ff6145eca9517997d4aac60fc/avogadro-1.102.0-cp38-cp38-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,656 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/2b/eb/1d9be90893712e1a4e1e2590f646f154f3e870a677f225a8a2c22a7e209e/avogadro-1.102.0-cp38-cp38-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,656 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/ce/20/c23a6db02f40dc2b1474e144b4fed1e6180b94311b39d7dce135a1382dcc/avogadro-1.102.0-cp38-cp38-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,656 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/87/ca/29b4318c0b97705fa6e64cb4eb26bdb3a51350288f8cf5d32c99f88e448f/avogadro-1.102.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,657 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/4e/5a/2463d12743544a9c0608e0d17af8ef8046c0f06683399bbb32b3d8c61320/avogadro-1.102.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,657 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/24/11/15ac51bb02ca7000f039d1e3147c60fdb882fa11fb4fe4b3f7346cbf685e/avogadro-1.102.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,658 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/bc/5a/818dae154a49d700bc45b70b62cb61b8cc62d3eca74e3b53477dc7d6191f/avogadro-1.102.0-cp39-cp39-manylinux_2_26_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,659 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/5e/28/8e234424f49a69f9bb17c70a6c96aaed30314aafa8f1d235a5fdb1a3a262/avogadro-1.102.0-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,659 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/d4/37/094fb0c2909fbbf90f35f4d951b8e6a84c1406a0a52832b94744760e849f/avogadro-1.102.0-cp39-cp39-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,660 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/22/ff/8fb7f00659c43dccbc52503c453385226eed37a4db58cc54ade3597a32b0/avogadro-1.102.0-cp39-cp39-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,660 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/b8/48/df7c7ee8be25e86b668a821a20a71be1a9376a96bf10ceaeba4db0750665/avogadro-1.102.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,661 Skipping link: No binaries permitted for avogadro: https://files.pythonhosted.org/packages/c6/94/86513990b625c78b6f3f0e67bc825dcad54fc34d699c2ff9cf0e7841f836/avogadro-1.102.0-cp39-cp39-win_arm64.whl (from https://pypi.org/simple/avogadro/) 2025-10-24T11:52:49,662 Found link https://files.pythonhosted.org/packages/90/c1/ccc9ce5f4427607c4643ca6507551552a897b4c80d02f87f043014326d6e/avogadro-1.102.0.tar.gz (from https://pypi.org/simple/avogadro/), version: 1.102.0 2025-10-24T11:52:49,662 Fetching project page and analyzing links: https://www.piwheels.org/simple/avogadro/ 2025-10-24T11:52:49,664 Getting page https://www.piwheels.org/simple/avogadro/ 2025-10-24T11:52:49,665 Found index url https://www.piwheels.org/simple 2025-10-24T11:52:49,867 Fetched page https://www.piwheels.org/simple/avogadro/ as text/html 2025-10-24T11:52:49,868 Skipping link: not a file: https://www.piwheels.org/simple/avogadro/ 2025-10-24T11:52:49,869 Skipping link: not a file: https://pypi.org/simple/avogadro/ 2025-10-24T11:52:49,887 Given no hashes to check 1 links for project 'avogadro': discarding no candidates 2025-10-24T11:52:49,905 Collecting avogadro==1.102.0 2025-10-24T11:52:49,907 Created temporary directory: /tmp/pip-unpack-kw3xu6z2 2025-10-24T11:52:50,048 Downloading avogadro-1.102.0.tar.gz (4.7 MB) 2025-10-24T11:52:54,165 Added avogadro==1.102.0 from https://files.pythonhosted.org/packages/90/c1/ccc9ce5f4427607c4643ca6507551552a897b4c80d02f87f043014326d6e/avogadro-1.102.0.tar.gz to build tracker '/tmp/pip-build-tracker-6y1my_mo' 2025-10-24T11:52:54,172 Created temporary directory: /tmp/pip-build-env-3i81adkq 2025-10-24T11:52:54,176 Installing build dependencies: started 2025-10-24T11:52:54,178 Running command pip subprocess to install build dependencies 2025-10-24T11:52:55,380 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-10-24T11:52:55,993 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-24T11:52:56,016 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-24T11:52:57,793 Collecting setuptools>=40.8.0 2025-10-24T11:52:57,899 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-10-24T11:52:58,165 Collecting wheel 2025-10-24T11:52:58,182 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2025-10-24T11:52:58,317 Collecting scikit-build 2025-10-24T11:52:58,326 Downloading https://www.piwheels.org/simple/scikit-build/scikit_build-0.18.1-py3-none-any.whl (85 kB) 2025-10-24T11:52:58,347 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 85.6/85.6 kB 6.5 MB/s eta 0:00:00 2025-10-24T11:52:58,556 Collecting pybind11 2025-10-24T11:52:58,592 Using cached https://www.piwheels.org/simple/pybind11/pybind11-3.0.1-py3-none-any.whl (293 kB) 2025-10-24T11:52:59,074 Collecting ninja 2025-10-24T11:52:59,086 Using cached ninja-1.13.0-py3-none-manylinux_2_28_armv7l.manylinux_2_31_armv7l.whl (146 kB) 2025-10-24T11:52:59,251 Collecting distro 2025-10-24T11:52:59,262 Downloading https://www.piwheels.org/simple/distro/distro-1.9.0-py3-none-any.whl (20 kB) 2025-10-24T11:52:59,432 Collecting packaging 2025-10-24T11:52:59,447 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2025-10-24T11:53:02,842 Installing collected packages: wheel, setuptools, pybind11, packaging, ninja, distro, scikit-build 2025-10-24T11:53:03,084 Creating /tmp/pip-build-env-3i81adkq/overlay/local/bin 2025-10-24T11:53:03,087 changing mode of /tmp/pip-build-env-3i81adkq/overlay/local/bin/wheel to 755 2025-10-24T11:53:07,205 changing mode of /tmp/pip-build-env-3i81adkq/overlay/local/bin/pybind11-config to 755 2025-10-24T11:53:07,496 changing mode of /tmp/pip-build-env-3i81adkq/overlay/local/bin/distro to 755 2025-10-24T11:53:07,795 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. 2025-10-24T11:53:07,795 conan 2.21.0 requires distro<=1.8.0,>=1.4.0; platform_system == "Linux" or platform_system == "FreeBSD", but you have distro 1.9.0 which is incompatible. 2025-10-24T11:53:07,796 Successfully installed distro-1.9.0 ninja-1.13.0 packaging-25.0 pybind11-3.0.1 scikit-build-0.18.1 setuptools-80.9.0 wheel-0.45.1 2025-10-24T11:53:08,095 Installing build dependencies: finished with status 'done' 2025-10-24T11:53:08,102 Getting requirements to build wheel: started 2025-10-24T11:53:08,103 Running command Getting requirements to build wheel 2025-10-24T11:53:08,803 /tmp/pip-build-env-3i81adkq/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'use_scm_version' 2025-10-24T11:53:08,803 warnings.warn(msg) 2025-10-24T11:53:08,823 /tmp/pip-build-env-3i81adkq/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-24T11:53:08,824 !! 2025-10-24T11:53:08,825 ******************************************************************************** 2025-10-24T11:53:08,826 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-24T11:53:08,827 License :: OSI Approved :: BSD License 2025-10-24T11:53:08,827 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-24T11:53:08,828 ******************************************************************************** 2025-10-24T11:53:08,829 !! 2025-10-24T11:53:08,829 self._finalize_license_expression() 2025-10-24T11:53:08,932 Getting requirements to build wheel: finished with status 'done' 2025-10-24T11:53:08,948 Installing backend dependencies: started 2025-10-24T11:53:08,949 Running command pip subprocess to install backend dependencies 2025-10-24T11:53:10,085 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-10-24T11:53:10,693 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-24T11:53:10,718 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-24T11:53:11,347 Collecting setuptools_scm 2025-10-24T11:53:11,366 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2025-10-24T11:53:11,560 Collecting packaging>=20 2025-10-24T11:53:11,577 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2025-10-24T11:53:13,037 Collecting setuptools 2025-10-24T11:53:13,130 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-10-24T11:53:16,048 Installing collected packages: setuptools, packaging, setuptools_scm 2025-10-24T11:53:20,132 Creating /tmp/pip-build-env-3i81adkq/normal/local/bin 2025-10-24T11:53:20,135 changing mode of /tmp/pip-build-env-3i81adkq/normal/local/bin/setuptools-scm to 755 2025-10-24T11:53:20,159 Successfully installed packaging-25.0 setuptools-80.9.0 setuptools_scm-9.2.2 2025-10-24T11:53:20,441 Installing backend dependencies: finished with status 'done' 2025-10-24T11:53:20,443 Created temporary directory: /tmp/pip-modern-metadata-q8l8o5xh 2025-10-24T11:53:20,445 Preparing metadata (pyproject.toml): started 2025-10-24T11:53:20,446 Running command Preparing metadata (pyproject.toml) 2025-10-24T11:53:21,210 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-10-24T11:53:21,239 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-10-24T11:53:21,244 /tmp/pip-build-env-3i81adkq/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-24T11:53:21,245 !! 2025-10-24T11:53:21,246 ******************************************************************************** 2025-10-24T11:53:21,246 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-24T11:53:21,247 License :: OSI Approved :: BSD License 2025-10-24T11:53:21,248 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-24T11:53:21,248 ******************************************************************************** 2025-10-24T11:53:21,249 !! 2025-10-24T11:53:21,250 self._finalize_license_expression() 2025-10-24T11:53:21,284 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-10-24T11:53:21,304 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-10-24T11:53:21,309 running dist_info 2025-10-24T11:53:21,319 creating /tmp/pip-modern-metadata-q8l8o5xh/avogadro.egg-info 2025-10-24T11:53:21,320 writing /tmp/pip-modern-metadata-q8l8o5xh/avogadro.egg-info/PKG-INFO 2025-10-24T11:53:21,323 writing dependency_links to /tmp/pip-modern-metadata-q8l8o5xh/avogadro.egg-info/dependency_links.txt 2025-10-24T11:53:21,325 writing top-level names to /tmp/pip-modern-metadata-q8l8o5xh/avogadro.egg-info/top_level.txt 2025-10-24T11:53:21,326 writing manifest file '/tmp/pip-modern-metadata-q8l8o5xh/avogadro.egg-info/SOURCES.txt' 2025-10-24T11:53:21,369 listing git files failed - pretending there aren't any 2025-10-24T11:53:21,374 reading manifest file '/tmp/pip-modern-metadata-q8l8o5xh/avogadro.egg-info/SOURCES.txt' 2025-10-24T11:53:21,377 adding license file 'LICENSE' 2025-10-24T11:53:21,379 writing manifest file '/tmp/pip-modern-metadata-q8l8o5xh/avogadro.egg-info/SOURCES.txt' 2025-10-24T11:53:21,380 creating '/tmp/pip-modern-metadata-q8l8o5xh/avogadro-1.102.0.dist-info' 2025-10-24T11:53:21,500 Preparing metadata (pyproject.toml): finished with status 'done' 2025-10-24T11:53:21,505 Source in /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287 has version 1.102.0, which satisfies requirement avogadro==1.102.0 from https://files.pythonhosted.org/packages/90/c1/ccc9ce5f4427607c4643ca6507551552a897b4c80d02f87f043014326d6e/avogadro-1.102.0.tar.gz 2025-10-24T11:53:21,506 Removed avogadro==1.102.0 from https://files.pythonhosted.org/packages/90/c1/ccc9ce5f4427607c4643ca6507551552a897b4c80d02f87f043014326d6e/avogadro-1.102.0.tar.gz from build tracker '/tmp/pip-build-tracker-6y1my_mo' 2025-10-24T11:53:21,511 Created temporary directory: /tmp/pip-unpack-0c0yac7y 2025-10-24T11:53:21,512 Building wheels for collected packages: avogadro 2025-10-24T11:53:21,516 Created temporary directory: /tmp/pip-wheel-ap7duz64 2025-10-24T11:53:21,517 Destination directory: /tmp/pip-wheel-ap7duz64 2025-10-24T11:53:21,519 Building wheel for avogadro (pyproject.toml): started 2025-10-24T11:53:21,521 Running command Building wheel for avogadro (pyproject.toml) 2025-10-24T11:53:22,233 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-10-24T11:53:22,261 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-10-24T11:53:22,265 /tmp/pip-build-env-3i81adkq/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-24T11:53:22,266 !! 2025-10-24T11:53:22,267 ******************************************************************************** 2025-10-24T11:53:22,268 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-24T11:53:22,269 License :: OSI Approved :: BSD License 2025-10-24T11:53:22,271 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-24T11:53:22,271 ******************************************************************************** 2025-10-24T11:53:22,272 !! 2025-10-24T11:53:22,273 self._finalize_license_expression() 2025-10-24T11:53:22,329 -------------------------------------------------------------------------------- 2025-10-24T11:53:22,330 -- Trying 'Ninja' generator 2025-10-24T11:53:22,330 -------------------------------- 2025-10-24T11:53:22,331 --------------------------- 2025-10-24T11:53:22,331 ---------------------- 2025-10-24T11:53:22,332 ----------------- 2025-10-24T11:53:22,332 ------------ 2025-10-24T11:53:22,333 ------- 2025-10-24T11:53:22,333 -- 2025-10-24T11:53:22,371 Not searching for unused variables given on the command line. 2025-10-24T11:53:22,650 -- The C compiler identification is GNU 12.2.0 2025-10-24T11:53:22,690 -- Detecting C compiler ABI info 2025-10-24T11:53:22,989 -- Detecting C compiler ABI info - done 2025-10-24T11:53:23,025 -- Check for working C compiler: /usr/bin/cc - skipped 2025-10-24T11:53:23,027 -- Detecting C compile features 2025-10-24T11:53:23,029 -- Detecting C compile features - done 2025-10-24T11:53:23,315 -- The CXX compiler identification is GNU 12.2.0 2025-10-24T11:53:23,348 -- Detecting CXX compiler ABI info 2025-10-24T11:53:23,707 -- Detecting CXX compiler ABI info - done 2025-10-24T11:53:23,746 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2025-10-24T11:53:23,747 -- Detecting CXX compile features 2025-10-24T11:53:23,750 -- Detecting CXX compile features - done 2025-10-24T11:53:23,757 -- Configuring done 2025-10-24T11:53:23,766 -- Generating done 2025-10-24T11:53:23,793 -- Build files have been written to: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_cmake_test_compile/build 2025-10-24T11:53:23,801 -- 2025-10-24T11:53:23,802 ------- 2025-10-24T11:53:23,802 ------------ 2025-10-24T11:53:23,803 ----------------- 2025-10-24T11:53:23,803 ---------------------- 2025-10-24T11:53:23,804 --------------------------- 2025-10-24T11:53:23,805 -------------------------------- 2025-10-24T11:53:23,805 -- Trying 'Ninja' generator - success 2025-10-24T11:53:23,806 -------------------------------------------------------------------------------- 2025-10-24T11:53:23,819 Configuring Project 2025-10-24T11:53:23,820 Working directory: 2025-10-24T11:53:23,820 /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-build 2025-10-24T11:53:23,821 Command: 2025-10-24T11:53:23,821 /usr/bin/cmake /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287 -G Ninja -DCMAKE_MAKE_PROGRAM:FILEPATH=/usr/bin/ninja --no-warn-unused-cli -DCMAKE_INSTALL_PREFIX:PATH=/tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install -DPYTHON_VERSION_STRING:STRING=3.11.2 -DSKBUILD:INTERNAL=TRUE -DCMAKE_MODULE_PATH:PATH=/tmp/pip-build-env-3i81adkq/overlay/local/lib/python3.11/dist-packages/skbuild/resources/cmake -DPYTHON_EXECUTABLE:PATH=/usr/bin/python3 -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.11 -DPYTHON_LIBRARY:PATH=/usr/lib/arm-linux-gnueabihf/libpython3.11.so -DPython_EXECUTABLE:PATH=/usr/bin/python3 -DPython_ROOT_DIR:PATH=/usr -DPython_FIND_REGISTRY:STRING=NEVER -DPython_INCLUDE_DIR:PATH=/usr/include/python3.11 -DPython3_EXECUTABLE:PATH=/usr/bin/python3 -DPython3_ROOT_DIR:PATH=/usr -DPython3_FIND_REGISTRY:STRING=NEVER -DPython3_INCLUDE_DIR:PATH=/usr/include/python3.11 -DCMAKE_MAKE_PROGRAM:FILEPATH=/usr/bin/ninja -DUSE_SPGLIB:BOOL=FALSE -DUSE_OPENGL:BOOL=FALSE -DUSE_QT:BOOL=FALSE -DUSE_MMTF:BOOL=FALSE -DUSE_PYTHON:BOOL=TRUE -DUSE_HDF5:BOOL=FALSE -DUSE_LIBARCHIVE:BOOL=FALSE -DUSE_LIBMSYM:BOOL=FALSE -DINSTALL_RUNTIME_DIR:PATH=avogadro -DINSTALL_LIBRARY_DIR:PATH=avogadro -DINSTALL_ARCHIVE_DIR:PATH=avogadro -Dpybind11_DIR:PATH=/tmp/pip-build-env-3i81adkq/overlay/local/lib/python3.11/dist-packages/pybind11/share/cmake/pybind11 -DCMAKE_BUILD_TYPE:STRING=Release 2025-10-24T11:53:23,864 Not searching for unused variables given on the command line. 2025-10-24T11:53:24,120 -- The C compiler identification is GNU 12.2.0 2025-10-24T11:53:24,436 -- The CXX compiler identification is GNU 12.2.0 2025-10-24T11:53:24,501 -- Detecting C compiler ABI info 2025-10-24T11:53:24,765 -- Detecting C compiler ABI info - done 2025-10-24T11:53:24,802 -- Check for working C compiler: /usr/bin/cc - skipped 2025-10-24T11:53:24,803 -- Detecting C compile features 2025-10-24T11:53:24,805 -- Detecting C compile features - done 2025-10-24T11:53:24,824 -- Detecting CXX compiler ABI info 2025-10-24T11:53:25,150 -- Detecting CXX compiler ABI info - done 2025-10-24T11:53:25,187 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2025-10-24T11:53:25,189 -- Detecting CXX compile features 2025-10-24T11:53:25,193 -- Detecting CXX compile features - done 2025-10-24T11:53:25,218 -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE 2025-10-24T11:53:25,560 -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success 2025-10-24T11:53:25,586 -- Found Git: /usr/bin/git (found version "2.39.5") 2025-10-24T11:53:25,595 -- Could not use git to determine source version, using version 1.102.0 2025-10-24T11:53:25,675 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD 2025-10-24T11:53:25,991 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success 2025-10-24T11:53:25,996 -- Found Threads: TRUE 2025-10-24T11:53:26,003 -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY 2025-10-24T11:53:26,373 -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success 2025-10-24T11:53:26,377 -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY 2025-10-24T11:53:26,714 -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success 2025-10-24T11:53:26,716 -- Performing Test COMPILER_HAS_DEPRECATED_ATTR 2025-10-24T11:53:27,102 -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success 2025-10-24T11:53:31,349 -- Found Python: /usr/bin/python3 (found version "3.11.2") found components: Interpreter Development Development.Module Development.Embed 2025-10-24T11:53:31,509 -- Performing Test HAS_FLTO_AUTO 2025-10-24T11:53:32,112 -- Performing Test HAS_FLTO_AUTO - Success 2025-10-24T11:53:32,115 -- Found pybind11: /tmp/pip-build-env-3i81adkq/overlay/local/lib/python3.11/dist-packages/pybind11/include (found version "3.0.1") 2025-10-24T11:53:32,134 -- Configuring done 2025-10-24T11:53:32,351 -- Generating done 2025-10-24T11:53:32,390 -- Build files have been written to: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-build 2025-10-24T11:53:32,714 [1/85] Building C object thirdparty/CMakeFiles/struct.dir/struct/struct_endian.c.o 2025-10-24T11:53:35,024 [2/85] Building C object thirdparty/CMakeFiles/struct.dir/struct/struct.c.o 2025-10-24T11:53:35,623 [3/85] Linking C static library thirdparty/libstruct.a 2025-10-24T11:53:35,914 [4/85] Building CXX object utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o 2025-10-24T11:53:36,843 [5/85] Linking CXX executable bin/encodefile 2025-10-24T11:53:38,854 [6/85] Building CXX object utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o 2025-10-24T11:53:39,783 [7/85] Linking CXX executable bin/resdataparse 2025-10-24T11:53:40,225 [8/85] Building CXX object utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o 2025-10-24T11:53:40,226 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:53:40,227 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/utilities.h:13, 2025-10-24T11:53:40,228 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/utilities/bodr/bodrparse.cxx:19: 2025-10-24T11:53:40,230 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >}; _Tp = Element; _Alloc = std::allocator]’: 2025-10-24T11:53:40,231 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:53:40,232 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:53:40,233 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:53:40,234 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >}; _Tp = Element; _Alloc = std::allocator]’, 2025-10-24T11:53:40,235 inlined from ‘int main(int, char**)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/utilities/bodr/bodrparse.cxx:110:30: 2025-10-24T11:53:40,236 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:53:40,237 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:53:40,238 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:53:48,625 [9/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/angleiterator.cpp.o 2025-10-24T11:53:55,751 [10/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/atomutilities.cpp.o 2025-10-24T11:53:55,803 [11/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/cube.cpp.o 2025-10-24T11:53:55,965 [12/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/elements.cpp.o 2025-10-24T11:53:57,473 [13/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/coordinateblockgenerator.cpp.o 2025-10-24T11:54:04,342 [14/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/crystaltools.cpp.o 2025-10-24T11:54:04,343 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:54:04,344 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:12, 2025-10-24T11:54:04,345 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/crystaltools.h:11, 2025-10-24T11:54:04,346 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/crystaltools.cpp:6: 2025-10-24T11:54:04,347 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:54:04,349 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:54:04,350 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:54:04,351 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:04,352 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:54:04,353 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:54:04,354 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:54:04,355 inlined from ‘static bool Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, const Avogadro::Core::Array >&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/crystaltools.cpp:707:16, 2025-10-24T11:54:04,356 inlined from ‘static bool Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, const Avogadro::Core::Array >&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/crystaltools.cpp:697:6: 2025-10-24T11:54:04,358 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:54:04,359 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:54:04,360 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:04,362 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:54:04,363 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:54:04,364 inlined from ‘static bool Avogadro::Core::CrystalTools::fractionalCoordinates(const Avogadro::Core::Molecule&, Avogadro::Core::Array >&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/crystaltools.cpp:678:16, 2025-10-24T11:54:04,365 inlined from ‘static bool Avogadro::Core::CrystalTools::fractionalCoordinates(const Avogadro::Core::Molecule&, Avogadro::Core::Array >&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/crystaltools.cpp:671:6: 2025-10-24T11:54:04,366 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:54:04,367 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:54:04,368 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:04,369 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:54:04,370 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:54:04,371 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:54:04,372 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:54:04,373 inlined from ‘static bool Avogadro::Core::CrystalTools::buildSupercell(Avogadro::Core::Molecule&, unsigned int, unsigned int, unsigned int)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/crystaltools.cpp:586:32: 2025-10-24T11:54:04,374 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:54:04,375 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:54:04,376 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:07,253 [15/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/layer.cpp.o 2025-10-24T11:54:10,982 [16/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/graph.cpp.o 2025-10-24T11:54:11,359 [17/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/dihedraliterator.cpp.o 2025-10-24T11:54:16,340 [18/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/layermanager.cpp.o 2025-10-24T11:54:17,030 [19/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/gaussiansettools.cpp.o 2025-10-24T11:54:17,030 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:54:17,031 from /usr/include/c++/12/functional:62, 2025-10-24T11:54:17,032 from /usr/include/eigen3/Eigen/Core:85, 2025-10-24T11:54:17,033 from /usr/include/eigen3/Eigen/Dense:1, 2025-10-24T11:54:17,034 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/matrix.h:10, 2025-10-24T11:54:17,034 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/variant.h:12, 2025-10-24T11:54:17,035 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/basisset.h:10, 2025-10-24T11:54:17,036 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussiansettools.h:11, 2025-10-24T11:54:17,037 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussiansettools.cpp:6: 2025-10-24T11:54:17,038 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:54:17,038 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:54:17,039 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:54:17,040 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:17,041 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:54:17,042 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:17,043 inlined from ‘Avogadro::Core::GaussianSetTools::GaussianSetTools(Avogadro::Core::Molecule*)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussiansettools.cpp:22:29: 2025-10-24T11:54:17,044 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:17,045 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:54:17,046 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:17,047 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:54:17,048 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:54:17,049 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:54:17,050 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:17,051 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:54:17,052 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:54:17,053 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:54:17,054 inlined from ‘std::vector Avogadro::Core::GaussianSetTools::calculateValues(const Avogadro::Vector3&) const’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussiansettools.cpp:198:24: 2025-10-24T11:54:17,055 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:54:17,056 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:17,057 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:17,058 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:17,059 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:17,060 inlined from ‘std::vector Avogadro::Core::GaussianSetTools::calculateValues(const Avogadro::Vector3&) const’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussiansettools.cpp:200:18: 2025-10-24T11:54:17,061 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:17,062 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:17,063 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:17,063 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:17,065 inlined from ‘std::vector Avogadro::Core::GaussianSetTools::calculateValues(const Avogadro::Vector3&) const’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussiansettools.cpp:206:16: 2025-10-24T11:54:17,076 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:17,077 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:54:17,078 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:17,202 [20/85] Building CXX object thirdparty/CMakeFiles/pugixml.dir/pugixml/pugixml.cpp.o 2025-10-24T11:54:17,744 [21/85] Linking CXX static library thirdparty/libpugixml.a 2025-10-24T11:54:18,394 [22/85] Linking CXX executable bin/bodrparse 2025-10-24T11:54:18,974 [23/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/gaussianset.cpp.o 2025-10-24T11:54:18,975 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:54:18,976 from /usr/include/c++/12/functional:62, 2025-10-24T11:54:18,977 from /usr/include/eigen3/Eigen/Core:85, 2025-10-24T11:54:18,978 from /usr/include/eigen3/Eigen/Dense:1, 2025-10-24T11:54:18,979 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/matrix.h:10, 2025-10-24T11:54:18,980 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/variant.h:12, 2025-10-24T11:54:18,981 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/basisset.h:10, 2025-10-24T11:54:18,982 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.h:11, 2025-10-24T11:54:18,983 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:6: 2025-10-24T11:54:18,983 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:54:18,984 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:54:18,986 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:54:18,987 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:18,988 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:54:18,989 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:18,990 inlined from ‘unsigned int Avogadro::Core::GaussianSet::addGto(unsigned int, double, double)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:86:19: 2025-10-24T11:54:18,990 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:18,991 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:54:18,992 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:54:18,993 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:18,994 inlined from ‘unsigned int Avogadro::Core::GaussianSet::addGto(unsigned int, double, double)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:87:19: 2025-10-24T11:54:18,995 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,003 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:54:19,004 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:54:19,005 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:54:19,006 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:54:19,007 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:54:19,008 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,009 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,010 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,011 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:318:28: 2025-10-24T11:54:19,012 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,013 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,014 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,015 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,015 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,016 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:328:28: 2025-10-24T11:54:19,017 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,018 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,019 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,020 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,020 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:329:28: 2025-10-24T11:54:19,021 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,022 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:54:19,023 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:54:19,024 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,025 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:330:28: 2025-10-24T11:54:19,026 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,027 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:54:19,028 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:54:19,029 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,029 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,030 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:343:28: 2025-10-24T11:54:19,031 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,032 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,033 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,034 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,035 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:344:28: 2025-10-24T11:54:19,036 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,037 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:54:19,038 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:54:19,039 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,040 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:345:28: 2025-10-24T11:54:19,040 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,041 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:54:19,042 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:54:19,043 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,053 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,054 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:347:28: 2025-10-24T11:54:19,055 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,055 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,056 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,057 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,058 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:348:28: 2025-10-24T11:54:19,059 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,060 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:54:19,061 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:54:19,062 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,063 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:349:28: 2025-10-24T11:54:19,064 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,064 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:54:19,065 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:54:19,066 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,067 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,069 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:360:28: 2025-10-24T11:54:19,070 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,070 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,071 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,072 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,073 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,073 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:363:28: 2025-10-24T11:54:19,074 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,075 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,076 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,077 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,078 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:366:28: 2025-10-24T11:54:19,079 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,080 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:54:19,081 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:54:19,082 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,083 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,084 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:368:28: 2025-10-24T11:54:19,085 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,086 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,087 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,088 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,089 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,090 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:371:28: 2025-10-24T11:54:19,091 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,092 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,093 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,094 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,095 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,096 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:406:30: 2025-10-24T11:54:19,097 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,097 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,098 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,099 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,100 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,101 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:407:30: 2025-10-24T11:54:19,102 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,103 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,104 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,105 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,106 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,107 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:408:30: 2025-10-24T11:54:19,108 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,109 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,110 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,111 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,112 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,113 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:409:30: 2025-10-24T11:54:19,114 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,126 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,127 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,128 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,129 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,130 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:410:30: 2025-10-24T11:54:19,131 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,131 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,132 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,133 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,134 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,135 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:411:30: 2025-10-24T11:54:19,136 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,137 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,138 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,139 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,140 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,141 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:412:30: 2025-10-24T11:54:19,142 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,142 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,143 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,145 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,145 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,146 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:413:30: 2025-10-24T11:54:19,147 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,148 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,149 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,150 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,151 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,151 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:414:30: 2025-10-24T11:54:19,152 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,153 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,154 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,155 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,156 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,157 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:415:30: 2025-10-24T11:54:19,158 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,159 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,161 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,162 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,163 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,164 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:428:28: 2025-10-24T11:54:19,165 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,166 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,167 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,168 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,169 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,170 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:429:28: 2025-10-24T11:54:19,170 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,171 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,172 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,173 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,174 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,175 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:430:28: 2025-10-24T11:54:19,176 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,177 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,177 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,178 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,180 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,181 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:431:28: 2025-10-24T11:54:19,182 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,183 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,184 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,184 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,185 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,186 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:432:28: 2025-10-24T11:54:19,188 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,189 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,189 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,190 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,191 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,192 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:433:28: 2025-10-24T11:54:19,203 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,204 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,205 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,206 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,207 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,208 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:434:28: 2025-10-24T11:54:19,208 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,209 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,210 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,211 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,212 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,213 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:450:28: 2025-10-24T11:54:19,214 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,215 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,216 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,217 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,218 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,219 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:451:28: 2025-10-24T11:54:19,220 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,221 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,222 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,223 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,223 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,224 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:452:28: 2025-10-24T11:54:19,225 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,226 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,227 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,228 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,229 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,230 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:453:28: 2025-10-24T11:54:19,231 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,232 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,232 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,234 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,235 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,236 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:454:28: 2025-10-24T11:54:19,237 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,237 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,238 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,239 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,240 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,241 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:455:28: 2025-10-24T11:54:19,242 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,243 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,244 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,245 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,245 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,246 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:456:28: 2025-10-24T11:54:19,247 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,248 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,249 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,250 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,251 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,252 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:457:28: 2025-10-24T11:54:19,253 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,254 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,255 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,266 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,267 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,268 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:458:28: 2025-10-24T11:54:19,269 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,270 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,271 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,272 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,273 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,274 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:459:28: 2025-10-24T11:54:19,274 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,275 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,276 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,277 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,278 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,279 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:460:28: 2025-10-24T11:54:19,279 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,280 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,282 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,282 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,283 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,284 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:461:28: 2025-10-24T11:54:19,285 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,286 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,287 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,288 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,289 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,290 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:462:28: 2025-10-24T11:54:19,291 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,292 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,294 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,295 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,296 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,297 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:463:28: 2025-10-24T11:54:19,297 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,298 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,299 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,299 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,300 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,301 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:464:28: 2025-10-24T11:54:19,302 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,303 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,304 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,304 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,305 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,306 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:474:28: 2025-10-24T11:54:19,307 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,308 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,309 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,310 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,311 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,312 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:475:28: 2025-10-24T11:54:19,313 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,315 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,316 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,317 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,317 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,326 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:476:28: 2025-10-24T11:54:19,327 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,328 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,329 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,330 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,331 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,332 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:477:28: 2025-10-24T11:54:19,333 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,333 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,335 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,336 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,337 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,338 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:478:28: 2025-10-24T11:54:19,339 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,340 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,340 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,341 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,342 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,343 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:479:28: 2025-10-24T11:54:19,344 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,345 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,346 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,347 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,348 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,349 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:480:28: 2025-10-24T11:54:19,350 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,351 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,352 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,353 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,354 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,355 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:481:28: 2025-10-24T11:54:19,356 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,357 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,358 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,359 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:19,360 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:19,361 inlined from ‘void Avogadro::Core::GaussianSet::_ZN8Avogadro4Core11GaussianSet15initCalculationEv.part.0()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.cpp:482:28: 2025-10-24T11:54:19,362 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:19,363 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:19,364 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:19,469 [24/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/mutex.cpp.o 2025-10-24T11:54:31,623 [25/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/nameatomtyper.cpp.o 2025-10-24T11:54:33,349 [26/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/mesh.cpp.o 2025-10-24T11:54:34,567 [27/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/neighborperceiver.cpp.o 2025-10-24T11:54:39,944 [28/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/ringperceiver.cpp.o 2025-10-24T11:54:50,361 [29/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/slatersettools.cpp.o 2025-10-24T11:54:50,362 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:54:50,363 from /usr/include/c++/12/functional:62, 2025-10-24T11:54:50,364 from /usr/include/eigen3/Eigen/Core:85, 2025-10-24T11:54:50,365 from /usr/include/eigen3/Eigen/Dense:1, 2025-10-24T11:54:50,366 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/vector.h:10, 2025-10-24T11:54:50,367 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/slatersettools.h:11, 2025-10-24T11:54:50,368 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/slatersettools.cpp:6: 2025-10-24T11:54:50,369 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:54:50,370 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:54:50,371 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:54:50,372 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:50,373 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:54:50,374 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:54:50,375 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:54:50,376 inlined from ‘std::vector Avogadro::Core::SlaterSetTools::calculateValues(const Avogadro::Vector3&) const’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/slatersettools.cpp:98:24: 2025-10-24T11:54:50,377 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:54:50,379 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:50,380 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:50,381 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:54:50,382 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:54:50,383 inlined from ‘std::vector Avogadro::Core::SlaterSetTools::calculateValues(const Avogadro::Vector3&) const’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/slatersettools.cpp:99:18: 2025-10-24T11:54:50,384 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:54:50,385 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:54:50,386 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:54:54,317 [30/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/secondarystructure.cpp.o 2025-10-24T11:55:12,074 [31/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/unitcell.cpp.o 2025-10-24T11:55:12,853 [32/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/symbolatomtyper.cpp.o 2025-10-24T11:55:13,029 [33/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/version.cpp.o 2025-10-24T11:55:13,469 [34/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/spacegroups.cpp.o 2025-10-24T11:55:13,470 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:55:13,471 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:12, 2025-10-24T11:55:13,472 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/spacegroups.h:11, 2025-10-24T11:55:13,473 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/spacegroups.cpp:6: 2025-10-24T11:55:13,474 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:55:13,475 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:55:13,476 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:55:13,477 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:55:13,478 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:55:13,479 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:55:13,481 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:55:13,481 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:55:13,482 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:55:13,483 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:55:13,484 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:55:13,485 inlined from ‘static Avogadro::Core::Array > Avogadro::Core::SpaceGroups::getTransforms(short unsigned int, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/spacegroups.cpp:250:18: 2025-10-24T11:55:13,486 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:55:13,487 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:55:13,488 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:55:13,489 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:55:13,490 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:55:13,491 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:55:13,491 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:55:13,492 inlined from ‘static void Avogadro::Core::SpaceGroups::fillUnitCell(Avogadro::Core::Molecule&, short unsigned int, double, bool, bool)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/spacegroups.cpp:300:28: 2025-10-24T11:55:13,493 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:55:13,494 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:55:13,495 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:55:13,495 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:55:13,496 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:55:13,497 inlined from ‘static void Avogadro::Core::SpaceGroups::fillUnitCell(Avogadro::Core::Molecule&, short unsigned int, double, bool, bool)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/spacegroups.cpp:325:27: 2025-10-24T11:55:13,498 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:55:13,499 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:55:13,500 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:55:13,501 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:55:13,502 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:55:13,503 inlined from ‘static void Avogadro::Core::SpaceGroups::fillUnitCell(Avogadro::Core::Molecule&, short unsigned int, double, bool, bool)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/spacegroups.cpp:329:27: 2025-10-24T11:55:13,504 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:55:13,505 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:55:13,506 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:55:13,507 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:55:13,507 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:55:13,508 inlined from ‘static void Avogadro::Core::SpaceGroups::fillUnitCell(Avogadro::Core::Molecule&, short unsigned int, double, bool, bool)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/spacegroups.cpp:335:29: 2025-10-24T11:55:13,509 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:55:13,510 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:55:13,511 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:55:13,512 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:55:13,512 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:55:13,513 inlined from ‘static void Avogadro::Core::SpaceGroups::fillUnitCell(Avogadro::Core::Molecule&, short unsigned int, double, bool, bool)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/spacegroups.cpp:340:29: 2025-10-24T11:55:13,514 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:55:13,515 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:55:13,516 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:55:13,517 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:55:13,518 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:55:13,519 inlined from ‘static void Avogadro::Core::SpaceGroups::fillUnitCell(Avogadro::Core::Molecule&, short unsigned int, double, bool, bool)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/spacegroups.cpp:347:25: 2025-10-24T11:55:13,522 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:55:13,523 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:55:13,524 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:55:13,525 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:55:13,526 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:55:13,527 inlined from ‘static void Avogadro::Core::SpaceGroups::fillUnitCell(Avogadro::Core::Molecule&, short unsigned int, double, bool, bool)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/spacegroups.cpp:351:25: 2025-10-24T11:55:13,528 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:55:13,529 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:55:13,530 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:55:13,531 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:55:13,531 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:55:13,532 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:55:13,533 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:55:13,534 inlined from ‘static void Avogadro::Core::SpaceGroups::fillUnitCell(Avogadro::Core::Molecule&, short unsigned int, double, bool, bool)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/spacegroups.cpp:379:28: 2025-10-24T11:55:13,535 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:55:13,535 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:55:13,536 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:55:15,790 [35/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/sharedmutex.cpp.o 2025-10-24T11:55:25,821 [36/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/variantmap.cpp.o 2025-10-24T11:55:36,327 [37/85] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/chargemodel.cpp.o 2025-10-24T11:55:37,131 [38/85] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/chargemanager.cpp.o 2025-10-24T11:55:41,919 [39/85] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/defaultmodel.cpp.o 2025-10-24T11:55:58,655 [40/85] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/energymanager.cpp.o 2025-10-24T11:56:00,221 [41/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/slaterset.cpp.o 2025-10-24T11:56:00,736 [42/85] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/energycalculator.cpp.o 2025-10-24T11:56:00,737 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:56:00,738 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:12, 2025-10-24T11:56:00,739 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:13, 2025-10-24T11:56:00,740 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/calc/energycalculator.h:12, 2025-10-24T11:56:00,741 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/calc/energycalculator.cpp:6: 2025-10-24T11:56:00,742 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Avogadro::Core::Constraint&}; _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator]’: 2025-10-24T11:56:00,743 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:56:00,744 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:56:00,745 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:00,746 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:56:00,747 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator]’, 2025-10-24T11:56:00,748 inlined from ‘std::vector Avogadro::Calc::EnergyCalculator::constraints() const’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/calc/energycalculator.cpp:81:29: 2025-10-24T11:56:00,749 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:56:00,750 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:56:00,751 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:56:00,751 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator]’, 2025-10-24T11:56:00,752 inlined from ‘std::vector Avogadro::Calc::EnergyCalculator::constraints() const’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/calc/energycalculator.cpp:84:29: 2025-10-24T11:56:00,753 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:56:00,754 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:56:00,755 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:56:00,756 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator]’, 2025-10-24T11:56:00,757 inlined from ‘std::vector Avogadro::Calc::EnergyCalculator::constraints() const’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/calc/energycalculator.cpp:87:29: 2025-10-24T11:56:00,757 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:56:00,758 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:56:00,760 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:56:00,761 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator]’, 2025-10-24T11:56:00,762 inlined from ‘std::vector Avogadro::Calc::EnergyCalculator::constraints() const’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/calc/energycalculator.cpp:90:29: 2025-10-24T11:56:00,766 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:56:00,767 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:56:00,768 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:56:00,769 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator]’, 2025-10-24T11:56:00,770 inlined from ‘void Avogadro::Calc::EnergyCalculator::setConstraints(const std::vector&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/calc/energycalculator.cpp:54:40: 2025-10-24T11:56:00,771 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:56:00,772 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:56:00,773 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:56:00,774 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator]’, 2025-10-24T11:56:00,774 inlined from ‘void Avogadro::Calc::EnergyCalculator::setConstraints(const std::vector&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/calc/energycalculator.cpp:57:37: 2025-10-24T11:56:00,775 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:56:00,786 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:56:00,787 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:56:00,788 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator]’, 2025-10-24T11:56:00,789 inlined from ‘void Avogadro::Calc::EnergyCalculator::setConstraints(const std::vector&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/calc/energycalculator.cpp:60:39: 2025-10-24T11:56:00,790 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:56:00,790 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:56:00,791 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:56:00,792 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator]’, 2025-10-24T11:56:00,793 inlined from ‘void Avogadro::Calc::EnergyCalculator::setConstraints(const std::vector&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/calc/energycalculator.cpp:63:42: 2025-10-24T11:56:00,794 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:56:00,796 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:56:00,797 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:56:05,450 [43/85] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/lennardjones.cpp.o 2025-10-24T11:56:09,516 [44/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/molecule.cpp.o 2025-10-24T11:56:09,517 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:56:09,518 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:12, 2025-10-24T11:56:09,519 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:13, 2025-10-24T11:56:09,520 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.cpp:6: 2025-10-24T11:56:09,521 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Avogadro::Core::Constraint&}; _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator]’: 2025-10-24T11:56:09,522 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:56:09,523 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:56:09,524 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:09,525 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:56:09,526 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Core::Constraint; _Alloc = std::allocator]’, 2025-10-24T11:56:09,527 inlined from ‘void Avogadro::Core::Molecule::addConstraint(Avogadro::Real, Avogadro::Index, Avogadro::Index, Avogadro::Index, Avogadro::Index)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.cpp:355:26: 2025-10-24T11:56:09,528 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:56:09,547 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:56:09,548 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:56:09,549 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:56:09,550 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:56:09,551 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:56:09,552 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:09,553 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:56:09,554 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:56:09,555 inlined from ‘Avogadro::Core::Molecule::AtomType Avogadro::Core::Molecule::addAtom(unsigned char, Avogadro::Vector3)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.cpp:586:28: 2025-10-24T11:56:09,556 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:56:09,558 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:56:09,559 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:56:09,560 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:56:09,561 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:56:09,562 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:56:09,563 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:09,564 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:56:09,565 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = double]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:56:09,566 inlined from ‘bool Avogadro::Core::Molecule::setTimeStep(double, int)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.cpp:1317:23: 2025-10-24T11:56:09,567 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:56:09,568 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:56:09,570 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:09,963 [45/85] Building CXX object avogadro/io/CMakeFiles/IO.dir/cmsgpackformat.cpp.o 2025-10-24T11:56:15,105 [46/85] Building CXX object avogadro/io/CMakeFiles/IO.dir/fileformat.cpp.o 2025-10-24T11:56:25,264 [47/85] Building CXX object avogadro/io/CMakeFiles/IO.dir/fileformatmanager.cpp.o 2025-10-24T11:56:38,174 [48/85] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/uff.cpp.o 2025-10-24T11:56:38,175 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:56:38,176 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:12, 2025-10-24T11:56:38,177 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:13, 2025-10-24T11:56:38,178 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/calc/energycalculator.h:12, 2025-10-24T11:56:38,179 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/calc/uff.h:10, 2025-10-24T11:56:38,181 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/calc/uff.cpp:6: 2025-10-24T11:56:38,182 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Avogadro::Calc::UFFBond&}; _Tp = Avogadro::Calc::UFFBond; _Alloc = std::allocator]’: 2025-10-24T11:56:38,183 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:56:38,184 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:56:38,186 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:38,187 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:56:38,188 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Calc::UFFBond; _Alloc = std::allocator]’, 2025-10-24T11:56:38,189 inlined from ‘void Avogadro::Calc::UFFPrivate::setBonds()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/calc/uff.cpp:311:24: 2025-10-24T11:56:38,191 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:56:38,192 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:56:38,193 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:56:38,194 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Avogadro::Calc::UFFAngle&}; _Tp = Avogadro::Calc::UFFAngle; _Alloc = std::allocator]’: 2025-10-24T11:56:38,195 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:56:38,196 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:56:38,197 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:38,199 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Calc::UFFAngle; _Alloc = std::allocator]’, 2025-10-24T11:56:38,200 inlined from ‘void Avogadro::Calc::UFFPrivate::setAngles()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/calc/uff.cpp:397:25: 2025-10-24T11:56:38,201 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:56:38,203 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:56:38,204 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:56:38,205 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Avogadro::Calc::UFFOOP&}; _Tp = Avogadro::Calc::UFFOOP; _Alloc = std::allocator]’: 2025-10-24T11:56:38,209 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:56:38,211 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:56:38,212 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:38,227 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Calc::UFFOOP; _Alloc = std::allocator]’, 2025-10-24T11:56:38,228 inlined from ‘void Avogadro::Calc::UFFPrivate::setOOPs()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/calc/uff.cpp:476:23: 2025-10-24T11:56:38,229 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:56:38,230 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:56:38,231 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:56:38,232 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Avogadro::Calc::UFFTorsion&}; _Tp = Avogadro::Calc::UFFTorsion; _Alloc = std::allocator]’: 2025-10-24T11:56:38,233 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:56:38,235 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:56:38,236 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:38,237 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Calc::UFFTorsion; _Alloc = std::allocator]’, 2025-10-24T11:56:38,239 inlined from ‘void Avogadro::Calc::UFFPrivate::setTorsions()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/calc/uff.cpp:593:27: 2025-10-24T11:56:38,240 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:56:38,241 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:56:38,243 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:56:38,245 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Avogadro::Calc::UFFVdW&}; _Tp = Avogadro::Calc::UFFVdW; _Alloc = std::allocator]’: 2025-10-24T11:56:38,246 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:56:38,247 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:56:38,248 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:38,250 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Avogadro::Calc::UFFVdW; _Alloc = std::allocator]’, 2025-10-24T11:56:38,251 inlined from ‘void Avogadro::Calc::UFFPrivate::setVdWs()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/calc/uff.cpp:630:27: 2025-10-24T11:56:38,252 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:56:38,253 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:56:38,254 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:56:38,366 [49/85] Building CXX object avogadro/io/CMakeFiles/IO.dir/cmlformat.cpp.o 2025-10-24T11:56:38,367 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:56:38,367 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/fileformat.h:15, 2025-10-24T11:56:38,368 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/cmlformat.h:9, 2025-10-24T11:56:38,369 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/cmlformat.cpp:6: 2025-10-24T11:56:38,370 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:56:38,371 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:56:38,372 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:56:38,373 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:38,374 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:56:38,375 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:56:38,376 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:56:38,377 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:56:38,378 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:56:38,379 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:56:38,380 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:56:38,381 inlined from ‘bool Avogadro::Io::{anonymous}::CmlFormatPrivate::atoms()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/cmlformat.cpp:209:33: 2025-10-24T11:56:38,382 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:56:38,383 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:56:38,384 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:38,385 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:56:38,386 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:56:38,387 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:56:38,388 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:56:38,389 inlined from ‘bool Avogadro::Io::{anonymous}::CmlFormatPrivate::atoms()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/cmlformat.cpp:233:31: 2025-10-24T11:56:38,390 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:56:38,392 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:56:38,392 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:38,393 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:56:38,394 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:56:38,395 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition2d(Avogadro::Index, const Avogadro::Vector2&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1044:27, 2025-10-24T11:56:38,396 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition2d(const Avogadro::Vector2&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:282:32, 2025-10-24T11:56:38,397 inlined from ‘bool Avogadro::Io::{anonymous}::CmlFormatPrivate::atoms()’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/cmlformat.cpp:252:33: 2025-10-24T11:56:38,398 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:56:38,399 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:56:38,400 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:38,557 [50/85] Building CXX object avogadro/io/CMakeFiles/IO.dir/dcdformat.cpp.o 2025-10-24T11:56:38,558 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:56:38,560 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/fileformat.h:15, 2025-10-24T11:56:38,561 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/dcdformat.h:9, 2025-10-24T11:56:38,563 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/dcdformat.cpp:6: 2025-10-24T11:56:38,564 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:56:38,565 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:56:38,566 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:56:38,569 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:38,570 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:56:38,571 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:56:38,573 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:56:38,574 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:38,576 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:56:38,578 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:56:38,579 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:56:38,580 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:56:38,581 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:56:38,582 inlined from ‘virtual bool Avogadro::Io::DcdFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/dcdformat.cpp:309:26: 2025-10-24T11:56:38,583 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:56:38,583 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:56:38,585 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:38,586 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:56:38,587 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:56:38,588 inlined from ‘virtual bool Avogadro::Io::DcdFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/dcdformat.cpp:385:26: 2025-10-24T11:56:38,589 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:56:38,590 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:56:38,591 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:56:52,985 [51/85] Building CXX object avogadro/io/CMakeFiles/IO.dir/gromacsformat.cpp.o 2025-10-24T11:56:52,985 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:56:52,986 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/fileformat.h:15, 2025-10-24T11:56:52,987 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/gromacsformat.h:10, 2025-10-24T11:56:52,988 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/gromacsformat.cpp:6: 2025-10-24T11:56:52,989 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:56:52,990 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:56:52,991 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:56:52,992 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:52,993 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:56:52,994 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:56:52,995 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:56:52,996 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:56:52,996 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:56:52,997 inlined from ‘virtual bool Avogadro::Io::GromacsFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/gromacsformat.cpp:171:23: 2025-10-24T11:56:53,017 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:56:53,018 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:56:53,018 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:56:57,040 [52/85] Building CXX object avogadro/io/CMakeFiles/IO.dir/sdfformat.cpp.o 2025-10-24T11:57:11,170 [53/85] Building CXX object avogadro/io/CMakeFiles/IO.dir/mdlformat.cpp.o 2025-10-24T11:57:11,171 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:57:11,172 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/fileformat.h:15, 2025-10-24T11:57:11,173 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/mdlformat.h:9, 2025-10-24T11:57:11,174 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/mdlformat.cpp:6: 2025-10-24T11:57:11,175 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:57:11,177 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:57:11,178 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:57:11,180 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:11,181 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:57:11,182 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:57:11,183 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:57:11,184 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:57:11,186 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:57:11,187 inlined from ‘bool Avogadro::Io::MdlFormat::readV3000(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/mdlformat.cpp:488:26: 2025-10-24T11:57:11,188 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:57:11,189 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:57:11,190 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:11,191 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:57:11,192 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:57:11,193 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:57:11,195 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:57:11,196 inlined from ‘virtual bool Avogadro::Io::MdlFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/mdlformat.cpp:179:28: 2025-10-24T11:57:11,197 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:57:11,199 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:57:11,200 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:14,382 [54/85] Building CXX object avogadro/io/CMakeFiles/IO.dir/pdbformat.cpp.o 2025-10-24T11:57:14,383 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:57:14,384 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/fileformat.h:15, 2025-10-24T11:57:14,385 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/pdbformat.h:9, 2025-10-24T11:57:14,386 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/pdbformat.cpp:6: 2025-10-24T11:57:14,388 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:57:14,389 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:57:14,390 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:57:14,391 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:14,392 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:57:14,393 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:57:14,394 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:57:14,395 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:14,396 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:57:14,397 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:57:14,398 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:57:14,399 inlined from ‘virtual bool Avogadro::Io::PdbFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/pdbformat.cpp:194:35: 2025-10-24T11:57:14,400 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:57:14,401 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:57:14,402 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:57:14,403 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:57:14,404 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:57:14,405 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:57:14,406 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:57:14,407 inlined from ‘virtual bool Avogadro::Io::PdbFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/pdbformat.cpp:197:30: 2025-10-24T11:57:14,408 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:57:14,409 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:57:14,411 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:14,412 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:57:14,412 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:57:14,413 inlined from ‘virtual bool Avogadro::Io::PdbFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/pdbformat.cpp:203:28: 2025-10-24T11:57:14,414 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:57:14,415 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:57:14,416 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:57:22,505 [55/85] Building CXX object avogadro/io/CMakeFiles/IO.dir/lammpsformat.cpp.o 2025-10-24T11:57:22,506 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:57:22,507 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/fileformat.h:15, 2025-10-24T11:57:22,508 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/lammpsformat.h:9, 2025-10-24T11:57:22,510 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/lammpsformat.cpp:6: 2025-10-24T11:57:22,511 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:57:22,512 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:57:22,514 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:57:22,515 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:22,516 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:57:22,517 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:57:22,518 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:57:22,520 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:22,521 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:57:22,522 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:57:22,523 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:57:22,524 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:57:22,526 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:57:22,527 inlined from ‘virtual bool Avogadro::Io::LammpsTrajectoryFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/lammpsformat.cpp:204:26: 2025-10-24T11:57:22,528 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:57:22,536 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:57:22,537 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:22,538 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:57:22,539 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:57:22,540 inlined from ‘virtual bool Avogadro::Io::LammpsTrajectoryFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/lammpsformat.cpp:386:26: 2025-10-24T11:57:22,541 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:57:22,542 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:57:22,544 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:57:39,756 [56/85] Building CXX object avogadro/io/CMakeFiles/IO.dir/trrformat.cpp.o 2025-10-24T11:57:39,757 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:57:39,758 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/fileformat.h:15, 2025-10-24T11:57:39,759 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/trrformat.h:9, 2025-10-24T11:57:39,760 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/trrformat.cpp:6: 2025-10-24T11:57:39,761 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:57:39,763 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:57:39,764 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:57:39,765 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:39,766 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:57:39,767 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:57:39,768 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:57:39,769 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:39,771 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:57:39,771 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:57:39,772 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:57:39,773 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:57:39,774 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:57:39,775 inlined from ‘virtual bool Avogadro::Io::TrrFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/trrformat.cpp:241:32: 2025-10-24T11:57:39,776 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:57:39,778 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:57:39,779 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:39,780 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:57:39,780 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:57:39,782 inlined from ‘virtual bool Avogadro::Io::TrrFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/trrformat.cpp:404:32: 2025-10-24T11:57:39,783 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:57:39,784 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:57:39,785 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:57:52,018 [57/85] Building CXX object avogadro/io/CMakeFiles/IO.dir/vaspformat.cpp.o 2025-10-24T11:57:52,019 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:57:52,020 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/fileformat.h:15, 2025-10-24T11:57:52,021 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/vaspformat.h:9, 2025-10-24T11:57:52,022 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/vaspformat.cpp:6: 2025-10-24T11:57:52,023 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double&, double&, double&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:57:52,024 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:57:52,025 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:57:52,026 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:52,027 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:57:52,028 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:57:52,028 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:57:52,029 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:52,030 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:57:52,031 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:57:52,032 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:57:52,033 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:52,033 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:57:52,035 inlined from ‘std::optional > Avogadro::Core::lexicalCast(Iterator, Iterator) [with T = double; Iterator = __gnu_cxx::__normal_iterator*, std::vector > >]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/utilities.h:152:26: 2025-10-24T11:57:52,035 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:57:52,037 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:57:52,038 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:52,039 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:57:52,040 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:57:52,041 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:57:52,042 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:52,043 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double&, double&, double&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:57:52,056 inlined from ‘virtual bool Avogadro::Io::PoscarFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/vaspformat.cpp:194:27: 2025-10-24T11:57:52,057 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:57:52,058 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:57:52,059 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:52,060 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:57:52,061 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:57:52,062 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:57:52,063 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:57:52,064 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:57:52,065 inlined from ‘virtual bool Avogadro::Io::PoscarFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/vaspformat.cpp:234:28: 2025-10-24T11:57:52,066 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:57:52,067 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:57:52,068 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:52,069 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:57:52,070 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:57:52,071 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:57:52,072 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:57:52,073 inlined from ‘virtual bool Avogadro::Io::OutcarFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/vaspformat.cpp:442:34: 2025-10-24T11:57:52,073 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:57:52,074 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:57:52,075 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:57:52,076 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:57:52,077 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:57:52,078 inlined from ‘virtual bool Avogadro::Io::OutcarFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/vaspformat.cpp:445:32: 2025-10-24T11:57:52,079 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:57:52,080 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:57:52,080 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:58:04,995 [58/85] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/gamessus.cpp.o 2025-10-24T11:58:04,998 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:58:05,000 from /usr/include/c++/12/functional:62, 2025-10-24T11:58:05,002 from /usr/include/eigen3/Eigen/Core:85, 2025-10-24T11:58:05,004 from /usr/include/eigen3/Eigen/Dense:1, 2025-10-24T11:58:05,006 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/matrix.h:10, 2025-10-24T11:58:05,007 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/variant.h:12, 2025-10-24T11:58:05,010 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/basisset.h:10, 2025-10-24T11:58:05,012 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/gaussianset.h:11, 2025-10-24T11:58:05,016 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/gamessus.h:10, 2025-10-24T11:58:05,017 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/gamessus.cpp:6: 2025-10-24T11:58:05,018 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:58:05,020 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:58:05,021 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:05,022 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:05,026 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:58:05,036 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:58:05,038 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:05,039 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:05,042 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:58:05,043 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:58:05,044 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:58:05,046 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:58:05,048 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:58:05,050 inlined from ‘void Avogadro::QuantumIO::GAMESSUSOutput::readAtomBlock(std::istream&, Avogadro::Core::Molecule&, bool)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/gamessus.cpp:143:25: 2025-10-24T11:58:05,051 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:58:05,053 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:58:05,054 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:05,055 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:58:05,056 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:58:05,057 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:05,058 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:05,059 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:05,060 inlined from ‘void Avogadro::QuantumIO::GAMESSUSOutput::readEigenvectors(std::istream&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/gamessus.cpp:239:33: 2025-10-24T11:58:05,062 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:05,063 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:58:05,064 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:58:05,065 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:05,067 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:58:05,068 inlined from ‘void Avogadro::QuantumIO::GAMESSUSOutput::readEigenvectors(std::istream&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/gamessus.cpp:246:34: 2025-10-24T11:58:05,069 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:05,071 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:58:05,072 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:05,073 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:05,074 inlined from ‘void Avogadro::QuantumIO::GAMESSUSOutput::readEigenvectors(std::istream&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/gamessus.cpp:261:27: 2025-10-24T11:58:05,075 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:05,077 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:58:05,078 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:58:05,079 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:05,080 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:58:05,082 inlined from ‘void Avogadro::QuantumIO::GAMESSUSOutput::readBasisSet(std::istream&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/gamessus.cpp:204:22: 2025-10-24T11:58:05,083 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:05,084 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:58:05,085 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:05,086 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:05,087 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:58:05,088 inlined from ‘void Avogadro::QuantumIO::GAMESSUSOutput::readBasisSet(std::istream&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/gamessus.cpp:205:22: 2025-10-24T11:58:05,089 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:05,090 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:58:05,091 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:05,092 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:05,093 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:58:05,094 inlined from ‘void Avogadro::QuantumIO::GAMESSUSOutput::readBasisSet(std::istream&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/gamessus.cpp:207:26: 2025-10-24T11:58:05,095 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:05,097 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:58:05,107 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:08,432 [59/85] Building CXX object avogadro/io/CMakeFiles/IO.dir/turbomoleformat.cpp.o 2025-10-24T11:58:08,433 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:58:08,434 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/fileformat.h:15, 2025-10-24T11:58:08,435 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/turbomoleformat.h:9, 2025-10-24T11:58:08,436 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/turbomoleformat.cpp:6: 2025-10-24T11:58:08,437 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:58:08,438 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:58:08,439 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:08,439 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:08,441 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:58:08,442 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:58:08,443 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:08,443 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:08,444 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:08,445 inlined from ‘std::optional > Avogadro::Core::lexicalCast(Iterator, Iterator) [with T = double; Iterator = __gnu_cxx::__normal_iterator*, std::vector > >]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/utilities.h:152:26: 2025-10-24T11:58:08,466 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:08,467 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:58:08,468 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:08,469 In file included from /usr/include/c++/12/set:60, 2025-10-24T11:58:08,469 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/graph.h:13, 2025-10-24T11:58:08,470 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:17, 2025-10-24T11:58:08,471 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/turbomoleformat.cpp:9: 2025-10-24T11:58:08,476 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:58:08,478 /usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:08,479 2209 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-10-24T11:58:08,480 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:08,481 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, nlohmann::json_abi_v3_11_3::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector >, void>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:58:08,482 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:08,484 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-10-24T11:58:08,485 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:08,487 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:58:08,488 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:08,489 In file included from /usr/include/c++/12/map:61, 2025-10-24T11:58:08,496 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/variantmap.h:13, 2025-10-24T11:58:08,497 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:19: 2025-10-24T11:58:08,499 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, nlohmann::json_abi_v3_11_3::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector >, void>}; _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:58:08,500 inlined from ‘std::pair, std::_Select1st >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind >::other>::iterator, bool> std::map<_Key, _Tp, _Compare, _Alloc>::emplace(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, nlohmann::json_abi_v3_11_3::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector >, void>}; _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’ at /usr/include/c++/12/bits/stl_map.h:599:22, 2025-10-24T11:58:08,501 inlined from ‘nlohmann::json_abi_v3_11_3::basic_json::basic_json(initializer_list_t, bool, value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector >; CustomBaseClass = void]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/json.hpp:942:47: 2025-10-24T11:58:08,503 /usr/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type ‘std::map, nlohmann::json_abi_v3_11_3::basic_json<>, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’} changed in GCC 7.1 2025-10-24T11:58:08,504 638 | return _M_t._M_emplace_hint_unique(__pos, 2025-10-24T11:58:08,505 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2025-10-24T11:58:08,506 639 | std::forward<_Args>(__args)...); 2025-10-24T11:58:08,508 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:08,509 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:58:08,510 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/json_sax.hpp:441:83: 2025-10-24T11:58:08,511 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:08,513 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-10-24T11:58:08,516 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:08,518 512 | std::tuple(__k), 2025-10-24T11:58:08,519 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:08,520 513 | std::tuple<>()); 2025-10-24T11:58:08,521 | ~~~~~~~~~~~~~~~ 2025-10-24T11:58:08,527 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:58:08,528 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79, 2025-10-24T11:58:08,529 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/parser.hpp:219:29: 2025-10-24T11:58:08,530 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:08,531 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-10-24T11:58:08,532 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:08,533 512 | std::tuple(__k), 2025-10-24T11:58:08,535 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:08,536 513 | std::tuple<>()); 2025-10-24T11:58:08,537 | ~~~~~~~~~~~~~~~ 2025-10-24T11:58:08,538 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:58:08,547 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79, 2025-10-24T11:58:08,548 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/parser.hpp:430:21: 2025-10-24T11:58:08,549 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:08,551 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-10-24T11:58:08,552 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:08,553 512 | std::tuple(__k), 2025-10-24T11:58:08,554 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:08,555 513 | std::tuple<>()); 2025-10-24T11:58:08,556 | ~~~~~~~~~~~~~~~ 2025-10-24T11:58:08,557 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:58:08,558 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:58:08,559 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:58:08,560 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:58:08,561 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:58:08,563 inlined from ‘virtual bool Avogadro::Io::TurbomoleFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/turbomoleformat.cpp:115:30: 2025-10-24T11:58:08,564 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:58:08,565 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:58:08,576 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:08,578 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:58:08,579 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:58:08,580 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:58:08,581 inlined from ‘virtual bool Avogadro::Io::TurbomoleFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/turbomoleformat.cpp:207:28: 2025-10-24T11:58:08,583 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:58:08,584 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:58:08,585 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:19,963 [60/85] Building CXX object avogadro/io/CMakeFiles/IO.dir/cjsonformat.cpp.o 2025-10-24T11:58:19,964 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:58:19,965 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/fileformat.h:15, 2025-10-24T11:58:19,966 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/cjsonformat.h:9, 2025-10-24T11:58:19,967 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/cjsonformat.cpp:6: 2025-10-24T11:58:19,968 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:58:19,970 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:58:19,972 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:19,973 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:19,974 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:58:19,975 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:58:19,976 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:58:19,977 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27: 2025-10-24T11:58:19,978 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:58:19,980 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:58:19,982 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:19,996 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:58:20,006 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:58:20,007 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:20,009 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:20,011 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:58:20,012 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22: 2025-10-24T11:58:20,014 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:58:20,015 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:58:20,016 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:58:20,018 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:58:20,019 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:58:20,020 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:20,021 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:20,022 /usr/include/c++/12/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:58:20,023 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:20,024 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:58:20,025 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:20,026 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:58:20,027 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:58:20,028 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:20,029 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:20,030 In file included from /usr/include/c++/12/map:60, 2025-10-24T11:58:20,031 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/layermanager.h:15, 2025-10-24T11:58:20,032 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/cjsonformat.cpp:12: 2025-10-24T11:58:20,034 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:58:20,035 /usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:20,037 2209 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-10-24T11:58:20,038 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:20,039 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, std::nullptr_t}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:58:20,040 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:20,041 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-10-24T11:58:20,042 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:20,056 In file included from /usr/include/c++/12/map:61: 2025-10-24T11:58:20,057 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, std::nullptr_t}; _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:58:20,058 inlined from ‘std::pair, std::_Select1st >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind >::other>::iterator, bool> std::map<_Key, _Tp, _Compare, _Alloc>::emplace(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, std::nullptr_t}; _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’ at /usr/include/c++/12/bits/stl_map.h:599:22, 2025-10-24T11:58:20,060 inlined from ‘nlohmann::json_abi_v3_11_3::basic_json::value_type& nlohmann::json_abi_v3_11_3::basic_json::operator[](typename object_t::key_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector; CustomBaseClass = void]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/json.hpp:2132:57: 2025-10-24T11:58:20,061 /usr/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type ‘std::map, nlohmann::json_abi_v3_11_3::basic_json<>, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’} changed in GCC 7.1 2025-10-24T11:58:20,063 638 | return _M_t._M_emplace_hint_unique(__pos, 2025-10-24T11:58:20,064 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2025-10-24T11:58:20,065 639 | std::forward<_Args>(__args)...); 2025-10-24T11:58:20,066 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:20,067 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:58:20,067 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:20,068 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-10-24T11:58:20,069 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:20,070 /usr/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:58:20,071 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:20,072 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-10-24T11:58:20,073 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:20,074 512 | std::tuple(__k), 2025-10-24T11:58:20,075 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:20,076 513 | std::tuple<>()); 2025-10-24T11:58:20,078 | ~~~~~~~~~~~~~~~ 2025-10-24T11:58:20,079 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:58:20,080 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79, 2025-10-24T11:58:20,081 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::binary_reader::get_msgpack_object(std::size_t) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::input_stream_adapter; SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser >]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/binary_reader.hpp:1803:17: 2025-10-24T11:58:20,082 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:20,084 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-10-24T11:58:20,085 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:20,086 512 | std::tuple(__k), 2025-10-24T11:58:20,087 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:20,088 513 | std::tuple<>()); 2025-10-24T11:58:20,089 | ~~~~~~~~~~~~~~~ 2025-10-24T11:58:20,091 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:58:20,092 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:58:20,093 inlined from ‘bool Avogadro::Core::Molecule::setForceVector(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1142:28, 2025-10-24T11:58:20,094 inlined from ‘void Avogadro::Core::AtomTemplate::setForceVector(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:370:29, 2025-10-24T11:58:20,096 inlined from ‘bool Avogadro::Io::CjsonFormat::deserialize(std::istream&, Avogadro::Core::Molecule&, bool)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/cjsonformat.cpp:221:25: 2025-10-24T11:58:20,097 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:58:20,098 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:58:20,099 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:20,100 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:20,102 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:58:20,102 inlined from ‘bool Avogadro::Io::CjsonFormat::deserialize(std::istream&, Avogadro::Core::Molecule&, bool)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/cjsonformat.cpp:675:24: 2025-10-24T11:58:20,103 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:20,104 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:58:20,106 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:58:20,107 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:20,108 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:58:20,109 inlined from ‘bool Avogadro::Io::CjsonFormat::deserialize(std::istream&, Avogadro::Core::Molecule&, bool)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/cjsonformat.cpp:683:25: 2025-10-24T11:58:20,110 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:20,111 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:58:20,112 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:58:20,113 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:20,114 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:58:20,115 inlined from ‘bool Avogadro::Io::CjsonFormat::deserialize(std::istream&, Avogadro::Core::Molecule&, bool)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/cjsonformat.cpp:691:25: 2025-10-24T11:58:20,116 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:20,117 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:58:20,118 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:58:20,119 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:58:20,120 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:58:20,121 inlined from ‘bool Avogadro::Io::CjsonFormat::deserialize(std::istream&, Avogadro::Core::Molecule&, bool)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/cjsonformat.cpp:701:22: 2025-10-24T11:58:20,122 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:58:20,123 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:58:20,124 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,211 [61/85] Building CXX object avogadro/io/CMakeFiles/IO.dir/xyzformat.cpp.o 2025-10-24T11:58:22,214 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:58:22,215 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/fileformat.h:15, 2025-10-24T11:58:22,216 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/xyzformat.h:9, 2025-10-24T11:58:22,217 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/xyzformat.cpp:6: 2025-10-24T11:58:22,218 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:58:22,219 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:58:22,221 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:22,222 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,223 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:58:22,224 /usr/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:58:22,225 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:22,226 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:58:22,227 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:58:22,228 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:58:22,230 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:58:22,232 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:22,233 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,234 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:58:22,235 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:58:22,236 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:22,246 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,247 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:22,248 inlined from ‘std::optional > Avogadro::Core::lexicalCast(Iterator, Iterator) [with T = double; Iterator = __gnu_cxx::__normal_iterator*, std::vector > >]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/utilities.h:152:26: 2025-10-24T11:58:22,249 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:22,250 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:58:22,251 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,252 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:58:22,254 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:58:22,255 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:22,256 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,257 In file included from /usr/include/c++/12/set:60, 2025-10-24T11:58:22,259 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/graph.h:13, 2025-10-24T11:58:22,260 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:17, 2025-10-24T11:58:22,261 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/xyzformat.cpp:9: 2025-10-24T11:58:22,262 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:58:22,263 /usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:22,264 2209 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-10-24T11:58:22,264 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,266 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, nlohmann::json_abi_v3_11_3::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector >, void>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:58:22,267 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:22,270 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-10-24T11:58:22,271 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,272 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:58:22,286 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:22,287 In file included from /usr/include/c++/12/map:61, 2025-10-24T11:58:22,288 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/variantmap.h:13, 2025-10-24T11:58:22,290 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:19: 2025-10-24T11:58:22,291 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, nlohmann::json_abi_v3_11_3::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector >, void>}; _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:58:22,292 inlined from ‘std::pair, std::_Select1st >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind >::other>::iterator, bool> std::map<_Key, _Tp, _Compare, _Alloc>::emplace(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, nlohmann::json_abi_v3_11_3::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector >, void>}; _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’ at /usr/include/c++/12/bits/stl_map.h:599:22, 2025-10-24T11:58:22,293 inlined from ‘nlohmann::json_abi_v3_11_3::basic_json::basic_json(initializer_list_t, bool, value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector >; CustomBaseClass = void]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/json.hpp:942:47: 2025-10-24T11:58:22,294 /usr/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type ‘std::map, nlohmann::json_abi_v3_11_3::basic_json<>, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’} changed in GCC 7.1 2025-10-24T11:58:22,296 638 | return _M_t._M_emplace_hint_unique(__pos, 2025-10-24T11:58:22,297 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2025-10-24T11:58:22,298 639 | std::forward<_Args>(__args)...); 2025-10-24T11:58:22,298 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,299 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:58:22,300 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/json_sax.hpp:441:83: 2025-10-24T11:58:22,302 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:22,303 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-10-24T11:58:22,304 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,305 512 | std::tuple(__k), 2025-10-24T11:58:22,306 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,307 513 | std::tuple<>()); 2025-10-24T11:58:22,307 | ~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,308 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:58:22,309 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79, 2025-10-24T11:58:22,310 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/parser.hpp:219:29: 2025-10-24T11:58:22,311 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:22,312 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-10-24T11:58:22,313 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,315 512 | std::tuple(__k), 2025-10-24T11:58:22,316 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,317 513 | std::tuple<>()); 2025-10-24T11:58:22,318 | ~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,319 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:58:22,320 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79, 2025-10-24T11:58:22,321 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/parser.hpp:430:21: 2025-10-24T11:58:22,322 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:22,323 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-10-24T11:58:22,324 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,325 512 | std::tuple(__k), 2025-10-24T11:58:22,326 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,327 513 | std::tuple<>()); 2025-10-24T11:58:22,328 | ~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,329 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:22,330 inlined from ‘virtual bool Avogadro::Io::XyzFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/xyzformat.cpp:91:23: 2025-10-24T11:58:22,331 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:22,332 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:58:22,346 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:58:22,347 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:58:22,348 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:58:22,349 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:58:22,350 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:58:22,351 inlined from ‘virtual bool Avogadro::Io::XyzFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/xyzformat.cpp:211:26: 2025-10-24T11:58:22,352 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:58:22,352 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:58:22,353 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,354 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:22,355 inlined from ‘virtual bool Avogadro::Io::XyzFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/xyzformat.cpp:216:26: 2025-10-24T11:58:22,356 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:22,357 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:58:22,358 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:58:22,359 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:58:22,360 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:58:22,361 inlined from ‘bool Avogadro::Core::Molecule::setForceVector(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1142:28, 2025-10-24T11:58:22,363 inlined from ‘void Avogadro::Core::AtomTemplate::setForceVector(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:370:29, 2025-10-24T11:58:22,364 inlined from ‘virtual bool Avogadro::Io::XyzFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/xyzformat.cpp:226:31: 2025-10-24T11:58:22,364 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:58:22,366 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:58:22,367 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:22,368 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:58:22,369 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:58:22,370 inlined from ‘virtual bool Avogadro::Io::XyzFormat::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/xyzformat.cpp:281:30: 2025-10-24T11:58:22,371 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:58:22,372 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:58:22,373 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:58:23,080 [62/85] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/gaussianfchk.cpp.o 2025-10-24T11:58:23,081 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:58:23,082 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:12, 2025-10-24T11:58:23,083 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/gaussianfchk.h:11, 2025-10-24T11:58:23,084 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/gaussianfchk.cpp:6: 2025-10-24T11:58:23,085 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:58:23,086 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:58:23,087 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:23,088 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:23,088 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:58:23,089 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:58:23,090 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:23,091 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:23,092 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:58:23,092 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:23,093 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22: 2025-10-24T11:58:23,094 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:23,095 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:58:23,095 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:58:23,096 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:58:23,097 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:58:23,098 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:23,098 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:23,099 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:58:23,106 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22: 2025-10-24T11:58:23,116 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:58:23,117 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:58:23,118 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:58:23,119 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:58:23,119 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:58:23,120 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:23,121 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:23,126 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:23,127 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:58:23,128 inlined from ‘std::vector Avogadro::QuantumIO::GaussianFchk::readArrayD(std::istream&, unsigned int, int, double)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/gaussianfchk.cpp:435:22: 2025-10-24T11:58:23,128 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:23,129 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:58:23,130 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:23,131 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:23,132 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:58:23,133 inlined from ‘std::vector Avogadro::QuantumIO::GaussianFchk::readArrayD(std::istream&, unsigned int, int, double)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/gaussianfchk.cpp:453:22: 2025-10-24T11:58:23,133 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:23,134 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:58:23,135 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:23,136 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:58:23,137 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:58:23,138 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:58:23,139 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:58:23,139 inlined from ‘virtual bool Avogadro::QuantumIO::GaussianFchk::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/gaussianfchk.cpp:60:20: 2025-10-24T11:58:23,140 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:58:23,141 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:58:23,142 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:29,475 [63/85] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/gaussiancube.cpp.o 2025-10-24T11:58:29,476 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:58:29,477 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/fileformat.h:15, 2025-10-24T11:58:29,478 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/gaussiancube.h:10, 2025-10-24T11:58:29,479 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/gaussiancube.cpp:6: 2025-10-24T11:58:29,480 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:58:29,481 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:58:29,482 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:29,484 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:29,485 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:58:29,486 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:58:29,487 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:58:29,488 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:58:29,490 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:58:29,491 inlined from ‘virtual bool Avogadro::QuantumIO::GaussianCube::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/gaussiancube.cpp:80:20: 2025-10-24T11:58:29,496 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:58:29,506 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:58:29,507 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:35,824 [64/85] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/genericoutput.cpp.o 2025-10-24T11:58:46,133 [65/85] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/genericjson.cpp.o 2025-10-24T11:58:46,135 In file included from /usr/include/c++/12/map:60, 2025-10-24T11:58:46,136 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/genericjson.h:12, 2025-10-24T11:58:46,137 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/genericjson.cpp:6: 2025-10-24T11:58:46,138 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:58:46,139 /usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:46,140 2209 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-10-24T11:58:46,141 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:46,143 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, std::nullptr_t}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:58:46,144 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:46,145 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-10-24T11:58:46,146 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:46,147 In file included from /usr/include/c++/12/map:61: 2025-10-24T11:58:46,148 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, std::nullptr_t}; _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:58:46,149 inlined from ‘std::pair, std::_Select1st >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind >::other>::iterator, bool> std::map<_Key, _Tp, _Compare, _Alloc>::emplace(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, std::nullptr_t}; _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’ at /usr/include/c++/12/bits/stl_map.h:599:22, 2025-10-24T11:58:46,150 inlined from ‘nlohmann::json_abi_v3_11_3::basic_json::value_type& nlohmann::json_abi_v3_11_3::basic_json::operator[](typename object_t::key_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector; CustomBaseClass = void]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/json.hpp:2132:57: 2025-10-24T11:58:46,152 /usr/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type ‘std::map, nlohmann::json_abi_v3_11_3::basic_json<>, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’} changed in GCC 7.1 2025-10-24T11:58:46,154 638 | return _M_t._M_emplace_hint_unique(__pos, 2025-10-24T11:58:46,155 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2025-10-24T11:58:46,156 639 | std::forward<_Args>(__args)...); 2025-10-24T11:58:46,157 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:46,158 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:58:46,158 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:46,159 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-10-24T11:58:46,160 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:46,161 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:58:46,163 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/json_sax.hpp:441:83: 2025-10-24T11:58:46,164 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:46,166 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-10-24T11:58:46,177 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:46,178 512 | std::tuple(__k), 2025-10-24T11:58:46,179 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:46,180 513 | std::tuple<>()); 2025-10-24T11:58:46,182 | ~~~~~~~~~~~~~~~ 2025-10-24T11:58:46,182 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:58:46,183 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79, 2025-10-24T11:58:46,184 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::input_stream_adapter]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/parser.hpp:219:29: 2025-10-24T11:58:46,185 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:46,186 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-10-24T11:58:46,187 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:46,188 512 | std::tuple(__k), 2025-10-24T11:58:46,189 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:46,190 513 | std::tuple<>()); 2025-10-24T11:58:46,191 | ~~~~~~~~~~~~~~~ 2025-10-24T11:58:46,193 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:58:46,195 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79, 2025-10-24T11:58:46,196 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::input_stream_adapter]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/parser.hpp:430:21: 2025-10-24T11:58:46,197 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:58:46,198 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-10-24T11:58:46,199 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:46,200 512 | std::tuple(__k), 2025-10-24T11:58:46,201 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:46,203 513 | std::tuple<>()); 2025-10-24T11:58:46,204 | ~~~~~~~~~~~~~~~ 2025-10-24T11:58:50,328 [66/85] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/molden.cpp.o 2025-10-24T11:58:50,329 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:58:50,330 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:12, 2025-10-24T11:58:50,331 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/molden.h:10, 2025-10-24T11:58:50,332 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/molden.cpp:6: 2025-10-24T11:58:50,333 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:58:50,334 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:58:50,335 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:50,337 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:50,338 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:58:50,339 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:58:50,340 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:58:50,341 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:58:50,342 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:50,344 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:50,345 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:58:50,346 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:58:50,348 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:58:50,349 inlined from ‘void Avogadro::QuantumIO::MoldenFile::processLine(std::istream&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/molden.cpp:248:50: 2025-10-24T11:58:50,350 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:58:50,352 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:58:50,353 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:58:50,354 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:58:50,355 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:58:50,357 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:58:50,359 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:58:50,366 inlined from ‘virtual bool Avogadro::QuantumIO::MoldenFile::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/molden.cpp:58:20: 2025-10-24T11:58:50,368 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:58:50,369 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:58:50,370 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:50,371 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:50,372 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = double]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:58:50,373 inlined from ‘virtual bool Avogadro::QuantumIO::MoldenFile::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/molden.cpp:74:29: 2025-10-24T11:58:50,374 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:50,376 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:58:50,378 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:51,948 [67/85] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/mopacaux.cpp.o 2025-10-24T11:58:51,949 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:58:51,950 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:12, 2025-10-24T11:58:51,951 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/mopacaux.h:10, 2025-10-24T11:58:51,952 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/mopacaux.cpp:6: 2025-10-24T11:58:51,954 /usr/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:58:51,955 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:58:51,956 739 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:51,957 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:51,957 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:51,958 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:51,959 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:58:51,960 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-10-24T11:58:51,961 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:51,961 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:51,962 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:58:51,963 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-10-24T11:58:51,964 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:58:51,965 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:51,966 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:58:51,967 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:58:51,968 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:51,969 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:58:51,970 inlined from ‘std::vector Avogadro::QuantumIO::MopacAux::readArrayD(std::istream&, unsigned int)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/mopacaux.cpp:321:20: 2025-10-24T11:58:51,971 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:51,972 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:58:51,973 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:51,974 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:58:51,975 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator >; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:51,976 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2025-10-24T11:58:51,978 inlined from ‘bool Avogadro::QuantumIO::MopacAux::readVibrationFrequencies(std::istream&, unsigned int)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/mopacaux.cpp:379:23: 2025-10-24T11:58:51,979 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:58:51,980 1779 | _M_range_insert(__pos, __first, __last, 2025-10-24T11:58:51,986 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:51,987 1780 | std::__iterator_category(__first)); 2025-10-24T11:58:51,988 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:51,989 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:51,990 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator >; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:58:51,990 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2025-10-24T11:58:51,991 inlined from ‘bool Avogadro::QuantumIO::MopacAux::readVibrationIntensities(std::istream&, unsigned int)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/mopacaux.cpp:386:25: 2025-10-24T11:58:51,992 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:58:51,993 1779 | _M_range_insert(__pos, __first, __last, 2025-10-24T11:58:52,008 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:52,009 1780 | std::__iterator_category(__first)); 2025-10-24T11:58:52,010 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:52,011 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:58:52,013 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:58:52,015 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:58:52,017 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:58:52,018 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:58:52,019 inlined from ‘virtual bool Avogadro::QuantumIO::MopacAux::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/mopacaux.cpp:51:20: 2025-10-24T11:58:52,020 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-10-24T11:58:52,021 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:58:52,023 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:58:52,024 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:58:52,025 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:58:52,027 inlined from ‘virtual bool Avogadro::QuantumIO::MopacAux::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/mopacaux.cpp:81:27: 2025-10-24T11:58:52,028 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-10-24T11:58:52,029 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:58:52,036 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:58:52,037 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:58:52,039 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:58:52,040 inlined from ‘virtual bool Avogadro::QuantumIO::MopacAux::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/mopacaux.cpp:111:28: 2025-10-24T11:58:52,041 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-10-24T11:58:52,042 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:58:52,043 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:59:02,272 [68/85] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o 2025-10-24T11:59:02,273 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:59:02,275 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:12, 2025-10-24T11:59:02,277 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/nwchemlog.h:10, 2025-10-24T11:59:02,278 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/nwchemlog.cpp:6: 2025-10-24T11:59:02,279 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:59:02,280 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:59:02,281 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:59:02,282 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:02,283 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:59:02,284 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:59:02,285 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:59:02,286 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:59:02,288 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:59:02,289 inlined from ‘void Avogadro::QuantumIO::NWChemLog::readAtoms(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/nwchemlog.cpp:117:20: 2025-10-24T11:59:02,296 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:59:02,306 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:59:02,307 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:02,308 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:59:02,310 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:59:02,312 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:59:02,313 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:02,314 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:59:02,315 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:59:02,316 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:59:02,317 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:59:02,318 inlined from ‘void Avogadro::QuantumIO::NWChemLog::readIntensities(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/nwchemlog.cpp:190:28: 2025-10-24T11:59:02,319 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:59:02,326 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:59:02,336 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:59:02,337 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:59:02,339 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:59:02,340 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:59:02,341 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:02,343 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:59:02,344 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:59:02,345 inlined from ‘void Avogadro::QuantumIO::NWChemLog::readFrequencies(const std::string&, std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/nwchemlog.cpp:133:26: 2025-10-24T11:59:02,347 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:59:02,348 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:59:02,349 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:02,350 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:59:02,351 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:59:02,352 inlined from ‘void Avogadro::QuantumIO::NWChemLog::readFrequencies(const std::string&, std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/nwchemlog.cpp:154:28: 2025-10-24T11:59:02,353 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:59:02,354 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:59:02,354 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:02,356 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:59:02,366 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:59:02,368 inlined from ‘void Avogadro::QuantumIO::NWChemLog::readFrequencies(const std::string&, std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/nwchemlog.cpp:165:28: 2025-10-24T11:59:02,369 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:59:02,371 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:59:02,372 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:59:02,373 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:59:02,374 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:59:02,375 inlined from ‘void Avogadro::QuantumIO::NWChemLog::readFrequencies(const std::string&, std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/nwchemlog.cpp:168:19: 2025-10-24T11:59:02,376 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:59:02,377 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:59:02,378 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:59:36,412 [69/85] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o 2025-10-24T11:59:36,413 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:59:36,414 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/fileformat.h:15, 2025-10-24T11:59:36,415 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/nwchemjson.h:10, 2025-10-24T11:59:36,416 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/nwchemjson.cpp:6: 2025-10-24T11:59:36,417 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:59:36,417 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:59:36,418 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:59:36,419 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,420 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:59:36,421 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:59:36,422 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19: 2025-10-24T11:59:36,423 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:59:36,424 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:59:36,425 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,427 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:59:36,428 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:59:36,429 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:59:36,430 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,431 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:59:36,432 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:59:36,433 In file included from /usr/include/c++/12/set:60, 2025-10-24T11:59:36,434 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/graph.h:13, 2025-10-24T11:59:36,435 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:17, 2025-10-24T11:59:36,436 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/nwchemjson.cpp:11: 2025-10-24T11:59:36,437 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:59:36,439 /usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:59:36,440 2209 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-10-24T11:59:36,441 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,442 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, std::nullptr_t}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:59:36,442 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:59:36,443 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-10-24T11:59:36,444 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,445 In file included from /usr/include/c++/12/map:61, 2025-10-24T11:59:36,446 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/variantmap.h:13, 2025-10-24T11:59:36,447 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:19: 2025-10-24T11:59:36,448 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, std::nullptr_t}; _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:59:36,449 inlined from ‘std::pair, std::_Select1st >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind >::other>::iterator, bool> std::map<_Key, _Tp, _Compare, _Alloc>::emplace(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, std::nullptr_t}; _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’ at /usr/include/c++/12/bits/stl_map.h:599:22, 2025-10-24T11:59:36,450 inlined from ‘nlohmann::json_abi_v3_11_3::basic_json::value_type& nlohmann::json_abi_v3_11_3::basic_json::operator[](typename object_t::key_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector; CustomBaseClass = void]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/json.hpp:2132:57: 2025-10-24T11:59:36,451 /usr/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type ‘std::map, nlohmann::json_abi_v3_11_3::basic_json<>, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’} changed in GCC 7.1 2025-10-24T11:59:36,452 638 | return _M_t._M_emplace_hint_unique(__pos, 2025-10-24T11:59:36,453 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2025-10-24T11:59:36,455 639 | std::forward<_Args>(__args)...); 2025-10-24T11:59:36,456 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,457 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:59:36,458 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:59:36,459 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-10-24T11:59:36,460 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,461 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:59:36,462 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/json_sax.hpp:441:83: 2025-10-24T11:59:36,463 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:59:36,476 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-10-24T11:59:36,477 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,478 512 | std::tuple(__k), 2025-10-24T11:59:36,479 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,480 513 | std::tuple<>()); 2025-10-24T11:59:36,481 | ~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,482 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:59:36,483 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79, 2025-10-24T11:59:36,484 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::input_stream_adapter]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/parser.hpp:219:29: 2025-10-24T11:59:36,485 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:59:36,486 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-10-24T11:59:36,487 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,489 512 | std::tuple(__k), 2025-10-24T11:59:36,490 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,491 513 | std::tuple<>()); 2025-10-24T11:59:36,492 | ~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,493 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:59:36,494 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79, 2025-10-24T11:59:36,495 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::input_stream_adapter]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/parser.hpp:430:21: 2025-10-24T11:59:36,496 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:59:36,497 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-10-24T11:59:36,498 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,499 512 | std::tuple(__k), 2025-10-24T11:59:36,500 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,501 513 | std::tuple<>()); 2025-10-24T11:59:36,502 | ~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,503 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:59:36,504 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:59:36,505 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:59:36,506 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:59:36,507 inlined from ‘virtual bool Avogadro::QuantumIO::NWChemJson::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/nwchemjson.cpp:139:22: 2025-10-24T11:59:36,508 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:59:36,509 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:59:36,511 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,511 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:59:36,512 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:59:36,513 inlined from ‘virtual bool Avogadro::QuantumIO::NWChemJson::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/nwchemjson.cpp:247:29: 2025-10-24T11:59:36,514 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:59:36,515 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:59:36,517 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,518 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:59:36,519 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-10-24T11:59:36,520 inlined from ‘virtual bool Avogadro::QuantumIO::NWChemJson::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/nwchemjson.cpp:249:30: 2025-10-24T11:59:36,521 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:59:36,522 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:59:36,523 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:36,524 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:59:36,525 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:59:36,526 inlined from ‘virtual bool Avogadro::QuantumIO::NWChemJson::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/nwchemjson.cpp:280:30: 2025-10-24T11:59:36,527 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:59:36,528 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:59:36,529 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:59:36,530 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:59:36,531 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:59:36,532 inlined from ‘virtual bool Avogadro::QuantumIO::NWChemJson::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/nwchemjson.cpp:282:30: 2025-10-24T11:59:36,533 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:59:36,534 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:59:36,535 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:59:50,744 [70/85] Building CXX object python/CMakeFiles/avogadroiopython.dir/io.cpp.o 2025-10-24T11:59:53,502 [71/85] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/qcschema.cpp.o 2025-10-24T11:59:53,503 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:59:53,504 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/fileformat.h:15, 2025-10-24T11:59:53,505 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/qcschema.h:10, 2025-10-24T11:59:53,506 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/qcschema.cpp:6: 2025-10-24T11:59:53,507 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:59:53,508 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:59:53,508 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:59:53,509 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,510 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:59:53,511 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:59:53,512 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19: 2025-10-24T11:59:53,514 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:59:53,515 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:59:53,516 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,517 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:59:53,518 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:59:53,519 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:59:53,519 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,520 /usr/include/c++/12/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:59:53,521 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:59:53,523 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-10-24T11:59:53,524 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,526 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:59:53,527 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 2025-10-24T11:59:53,528 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:59:53,529 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,529 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:59:53,530 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22: 2025-10-24T11:59:53,532 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:59:53,533 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:59:53,534 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:59:53,535 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:59:53,536 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:59:53,537 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:59:53,538 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,539 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:59:53,540 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22: 2025-10-24T11:59:53,541 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:59:53,543 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:59:53,544 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:59:53,545 In file included from /usr/include/c++/12/map:60, 2025-10-24T11:59:53,546 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/io/fileformatmanager.h:13, 2025-10-24T11:59:53,547 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/qcschema.cpp:9: 2025-10-24T11:59:53,548 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:59:53,549 /usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:59:53,550 2209 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-10-24T11:59:53,551 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,553 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, std::nullptr_t}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:59:53,555 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:59:53,555 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-10-24T11:59:53,556 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,558 In file included from /usr/include/c++/12/map:61: 2025-10-24T11:59:53,559 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, std::nullptr_t}; _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:59:53,560 inlined from ‘std::pair, std::_Select1st >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind >::other>::iterator, bool> std::map<_Key, _Tp, _Compare, _Alloc>::emplace(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, std::nullptr_t}; _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’ at /usr/include/c++/12/bits/stl_map.h:599:22, 2025-10-24T11:59:53,561 inlined from ‘nlohmann::json_abi_v3_11_3::basic_json::value_type& nlohmann::json_abi_v3_11_3::basic_json::operator[](typename object_t::key_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector >; CustomBaseClass = void]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/json.hpp:2132:57: 2025-10-24T11:59:53,563 /usr/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type ‘std::map, nlohmann::json_abi_v3_11_3::basic_json<>, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’} changed in GCC 7.1 2025-10-24T11:59:53,565 638 | return _M_t._M_emplace_hint_unique(__pos, 2025-10-24T11:59:53,566 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2025-10-24T11:59:53,567 639 | std::forward<_Args>(__args)...); 2025-10-24T11:59:53,568 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,569 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’: 2025-10-24T11:59:53,570 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:59:53,571 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2025-10-24T11:59:53,572 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,575 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:59:53,576 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/json_sax.hpp:441:83: 2025-10-24T11:59:53,577 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:59:53,578 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-10-24T11:59:53,580 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,581 512 | std::tuple(__k), 2025-10-24T11:59:53,581 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,582 513 | std::tuple<>()); 2025-10-24T11:59:53,583 | ~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,585 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:59:53,587 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79, 2025-10-24T11:59:53,588 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::input_stream_adapter]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/parser.hpp:219:29: 2025-10-24T11:59:53,589 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:59:53,590 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-10-24T11:59:53,591 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,592 512 | std::tuple(__k), 2025-10-24T11:59:53,593 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,594 513 | std::tuple<>()); 2025-10-24T11:59:53,596 | ~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,598 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]’, 2025-10-24T11:59:53,598 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/json_sax.hpp:246:79, 2025-10-24T11:59:53,599 inlined from ‘bool nlohmann::json_abi_v3_11_3::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::json_abi_v3_11_3::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_11_3::detail::input_stream_adapter]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/thirdparty/nlohmann/detail/input/parser.hpp:430:21: 2025-10-24T11:59:53,601 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2025-10-24T11:59:53,602 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2025-10-24T11:59:53,603 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,604 512 | std::tuple(__k), 2025-10-24T11:59:53,605 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,607 513 | std::tuple<>()); 2025-10-24T11:59:53,608 | ~~~~~~~~~~~~~~~ 2025-10-24T11:59:53,609 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:59:53,610 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19, 2025-10-24T11:59:53,611 inlined from ‘bool Avogadro::Core::Molecule::setAtomPosition3d(Avogadro::Index, const Avogadro::Vector3&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/molecule.h:1069:27, 2025-10-24T11:59:53,612 inlined from ‘void Avogadro::Core::AtomTemplate::setPosition3d(const Avogadro::Vector3&) [with Molecule_T = Avogadro::Core::Molecule]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/atom.h:296:32, 2025-10-24T11:59:53,614 inlined from ‘virtual bool Avogadro::QuantumIO::QCSchema::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/qcschema.cpp:130:20: 2025-10-24T11:59:53,615 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 2025-10-24T11:59:53,617 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:59:53,618 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:56,166 [72/85] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/orca.cpp.o 2025-10-24T11:59:56,167 In file included from /usr/include/c++/12/vector:70, 2025-10-24T11:59:56,168 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:12, 2025-10-24T11:59:56,170 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/orca.h:10, 2025-10-24T11:59:56,171 from /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/orca.cpp:6: 2025-10-24T11:59:56,172 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:59:56,183 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:59:56,187 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:59:56,187 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:56,188 In file included from /usr/include/c++/12/vector:64: 2025-10-24T11:59:56,189 /usr/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:59:56,192 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:59:56,193 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:59:56,194 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:59:56,195 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:59:56,195 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = double]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22: 2025-10-24T11:59:56,196 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:59:56,197 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:59:56,198 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:59:56,199 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:59:56,201 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-10-24T11:59:56,202 439 | vector<_Tp, _Alloc>:: 2025-10-24T11:59:56,203 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:56,204 /usr/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:59:56,205 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-10-24T11:59:56,206 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:59:56,207 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:59:56,208 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:59:56,209 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22: 2025-10-24T11:59:56,211 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-10-24T11:59:56,212 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:59:56,213 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:59:56,214 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2025-10-24T11:59:56,215 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-10-24T11:59:56,277 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:59:56,278 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:56,279 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:59:56,280 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19: 2025-10-24T11:59:56,281 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-10-24T11:59:56,282 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:59:56,283 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:56,285 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2025-10-24T11:59:56,286 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-10-24T11:59:56,287 523 | vector<_Tp, _Alloc>:: 2025-10-24T11:59:56,288 | ^~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:56,289 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:59:56,290 inlined from ‘void Avogadro::Core::Array::resize(const std::size_t&, const ValueType&) [with T = double]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:179:19: 2025-10-24T11:59:56,291 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:59:56,292 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-10-24T11:59:56,293 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-10-24T11:59:56,295 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-10-24T11:59:56,297 inlined from ‘void Avogadro::QuantumIO::ORCAOutput::processLine(std::istream&, Avogadro::Core::GaussianSet*)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/orca.cpp:233:25: 2025-10-24T11:59:56,298 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-10-24T11:59:56,299 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:59:56,300 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T11:59:56,301 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Matrix; _Alloc = std::allocator >]’, 2025-10-24T11:59:56,302 inlined from ‘void Avogadro::Core::Array::push_back(const ValueType&) [with T = Eigen::Matrix]’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/core/array.h:252:22, 2025-10-24T11:59:56,303 inlined from ‘virtual bool Avogadro::QuantumIO::ORCAOutput::read(std::istream&, Avogadro::Core::Molecule&)’ at /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/avogadro/quantumio/orca.cpp:74:28: 2025-10-24T11:59:56,304 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-10-24T11:59:56,306 1287 | _M_realloc_insert(end(), __x); 2025-10-24T11:59:56,308 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-10-24T12:00:03,466 [73/85] Building CXX object python/CMakeFiles/avogadrocorepython.dir/core.cpp.o 2025-10-24T12:01:07,427 [74/85] Building CXX object avogadro/core/CMakeFiles/Core.dir/residue.cpp.o 2025-10-24T12:01:07,880 [75/85] Linking CXX shared library lib/libAvogadroCore.so.1.102.0 2025-10-24T12:01:07,941 [76/85] Creating library symlink lib/libAvogadroCore.so.1 lib/libAvogadroCore.so 2025-10-24T12:01:08,374 [77/85] Linking CXX shared library lib/libAvogadroCalc.so.1.102.0 2025-10-24T12:01:08,435 [78/85] Creating library symlink lib/libAvogadroCalc.so.1 lib/libAvogadroCalc.so 2025-10-24T12:01:08,512 [79/85] Linking CXX shared library lib/libAvogadroIO.so.1.102.0 2025-10-24T12:01:08,559 [80/85] Creating library symlink lib/libAvogadroIO.so.1 lib/libAvogadroIO.so 2025-10-24T12:01:09,081 [81/85] Linking CXX shared library lib/libAvogadroQuantumIO.so.1.102.0 2025-10-24T12:01:09,141 [82/85] Creating library symlink lib/libAvogadroQuantumIO.so.1 lib/libAvogadroQuantumIO.so 2025-10-24T12:01:20,875 [83/85] Linking CXX shared module lib/avogadro/io.cpython-311-arm-linux-gnueabihf.so 2025-10-24T12:01:21,610 [84/85] Linking CXX shared module lib/avogadro/core.cpython-311-arm-linux-gnueabihf.so 2025-10-24T12:01:21,611 [84/85] Install the project... 2025-10-24T12:01:21,650 -- Install configuration: "Release" 2025-10-24T12:01:21,662 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/tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroIO.so.1.102.0 2025-10-24T12:01:21,921 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroIO.so.1 2025-10-24T12:01:21,924 -- Set runtime path of "/tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroIO.so.1.102.0" to "/tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/avogadro" 2025-10-24T12:01:21,925 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroIO.so 2025-10-24T12:01:21,927 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/cjsonformat.h 2025-10-24T12:01:21,930 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/cmlformat.h 2025-10-24T12:01:21,933 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/cmsgpackformat.h 2025-10-24T12:01:21,935 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/dcdformat.h 2025-10-24T12:01:21,938 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/fileformat.h 2025-10-24T12:01:21,942 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/fileformatmanager.h 2025-10-24T12:01:21,945 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/gromacsformat.h 2025-10-24T12:01:21,948 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/mdlformat.h 2025-10-24T12:01:21,950 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/lammpsformat.h 2025-10-24T12:01:21,953 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/pdbformat.h 2025-10-24T12:01:21,956 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/sdfformat.h 2025-10-24T12:01:21,959 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/trrformat.h 2025-10-24T12:01:21,961 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/turbomoleformat.h 2025-10-24T12:01:21,964 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/vaspformat.h 2025-10-24T12:01:21,967 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/xyzformat.h 2025-10-24T12:01:21,969 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/avogadroioexport.h 2025-10-24T12:01:21,974 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroQuantumIO.so.1.102.0 2025-10-24T12:01:21,986 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroQuantumIO.so.1 2025-10-24T12:01:21,988 -- Set runtime path of "/tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroQuantumIO.so.1.102.0" to "/tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/avogadro" 2025-10-24T12:01:21,989 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroQuantumIO.so 2025-10-24T12:01:21,992 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/gamessus.h 2025-10-24T12:01:21,995 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/gaussianfchk.h 2025-10-24T12:01:21,997 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/gaussiancube.h 2025-10-24T12:01:22,000 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/genericjson.h 2025-10-24T12:01:22,002 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/genericoutput.h 2025-10-24T12:01:22,005 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/molden.h 2025-10-24T12:01:22,007 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/mopacaux.h 2025-10-24T12:01:22,010 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/nwchemjson.h 2025-10-24T12:01:22,012 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/nwchemlog.h 2025-10-24T12:01:22,015 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/orca.h 2025-10-24T12:01:22,018 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/qcschema.h 2025-10-24T12:01:22,021 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/avogadroquantumioexport.h 2025-10-24T12:01:22,025 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/core.cpython-311-arm-linux-gnueabihf.so 2025-10-24T12:01:22,033 -- Set runtime path of "/tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/core.cpython-311-arm-linux-gnueabihf.so" to "$ORIGIN" 2025-10-24T12:01:22,033 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/io.cpython-311-arm-linux-gnueabihf.so 2025-10-24T12:01:22,040 -- Set runtime path of "/tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/io.cpython-311-arm-linux-gnueabihf.so" to "$ORIGIN" 2025-10-24T12:01:22,041 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/__init__.py 2025-10-24T12:01:22,044 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/cjson.py 2025-10-24T12:01:22,046 -- Installing: /tmp/pip-wheel-op6fj7vb/avogadro_2fd545e27cf84a10b9d9aa28bb1aa287/_skbuild/linux-armv7l-3.11/cmake-install/avogadro/connect.py 2025-10-24T12:01:22,110 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-10-24T12:01:22,132 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-10-24T12:01:22,139 running bdist_wheel 2025-10-24T12:01:22,150 running build 2025-10-24T12:01:22,150 running build_py 2025-10-24T12:01:22,153 creating _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro 2025-10-24T12:01:22,154 copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/connect.py -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro 2025-10-24T12:01:22,157 copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/__init__.py -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro 2025-10-24T12:01:22,159 copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/cjson.py -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro 2025-10-24T12:01:22,164 copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCore.so.1.102.0 -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro 2025-10-24T12:01:22,214 copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCore.so.1 -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro 2025-10-24T12:01:22,234 copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCore.so -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro 2025-10-24T12:01:22,502 copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCalc.so.1.102.0 -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro 2025-10-24T12:01:22,513 copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCalc.so.1 -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro 2025-10-24T12:01:22,523 copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroCalc.so -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro 2025-10-24T12:01:22,534 copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroIO.so.1.102.0 -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro 2025-10-24T12:01:22,573 copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroIO.so.1 -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro 2025-10-24T12:01:22,590 copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroIO.so -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro 2025-10-24T12:01:22,614 copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroQuantumIO.so.1.102.0 -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro 2025-10-24T12:01:22,626 copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroQuantumIO.so.1 -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro 2025-10-24T12:01:22,639 copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/libAvogadroQuantumIO.so -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro 2025-10-24T12:01:22,649 copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/core.cpython-311-arm-linux-gnueabihf.so -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro 2025-10-24T12:01:22,729 copying _skbuild/linux-armv7l-3.11/cmake-install/avogadro/io.cpython-311-arm-linux-gnueabihf.so -> _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro 2025-10-24T12:01:22,738 copied 3 files 2025-10-24T12:01:22,739 running build_ext 2025-10-24T12:01:22,746 installing to _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel 2025-10-24T12:01:22,747 running install 2025-10-24T12:01:22,766 running install_lib 2025-10-24T12:01:22,769 creating _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel 2025-10-24T12:01:22,776 creating _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro 2025-10-24T12:01:22,779 copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/io.cpython-311-arm-linux-gnueabihf.so -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro 2025-10-24T12:01:22,787 copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroCore.so.1 -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro 2025-10-24T12:01:22,805 copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroCalc.so.1 -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro 2025-10-24T12:01:22,811 copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroCalc.so -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro 2025-10-24T12:01:22,816 copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroIO.so.1 -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro 2025-10-24T12:01:22,854 copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroQuantumIO.so.1 -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro 2025-10-24T12:01:22,876 copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroQuantumIO.so -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro 2025-10-24T12:01:22,897 copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroCore.so.1.102.0 -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro 2025-10-24T12:01:22,956 copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/connect.py -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro 2025-10-24T12:01:22,958 copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroCore.so -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro 2025-10-24T12:01:22,978 copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroQuantumIO.so.1.102.0 -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro 2025-10-24T12:01:22,989 copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroIO.so.1.102.0 -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro 2025-10-24T12:01:23,005 copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/__init__.py -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro 2025-10-24T12:01:23,007 copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/cjson.py -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro 2025-10-24T12:01:23,009 copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/core.cpython-311-arm-linux-gnueabihf.so -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro 2025-10-24T12:01:23,015 copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroCalc.so.1.102.0 -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro 2025-10-24T12:01:23,020 copying _skbuild/linux-armv7l-3.11/setuptools/lib.linux-armv7l-cpython-311/avogadro/libAvogadroIO.so -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro 2025-10-24T12:01:23,041 copied 17 files 2025-10-24T12:01:23,042 running install_data 2025-10-24T12:01:23,051 creating _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data 2025-10-24T12:01:23,053 creating _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,055 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/residue.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,057 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/slaterset.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,059 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/mutex.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,061 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/graph.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,063 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/utilities.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,065 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/gaussianset.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,068 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/variant.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,070 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/coordinateblockgenerator.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,072 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/unitcell.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,074 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/dihedraliterator.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,076 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/coordinateset.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,078 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/atom.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,081 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/array.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,084 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/atomtyper-inline.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,086 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/contrastcolor.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,088 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/layermanager.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,091 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/avogadrocore.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,093 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/slatersettools.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,095 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/atomutilities.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,096 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/basisset.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,099 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/avogadrocoreexport.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,101 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/neighborperceiver.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,103 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/mesh.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,105 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/vector.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,107 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/elements.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,109 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/variant-inline.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,111 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/crystaltools.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,113 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/matrix.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,115 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/sharedmutex.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,117 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/spacegroups.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,120 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/angleiterator.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,121 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/version.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,123 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/constraint.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,125 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/atomtyper.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,127 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/secondarystructure.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,129 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/gaussiansettools.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,132 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/angletools.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,133 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/nameatomtyper.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,135 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/color3f.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,137 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/types.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,139 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/molecule.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,142 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/bond.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,145 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/layer.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,146 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/variantmap.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,148 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/ringperceiver.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,150 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/symbolatomtyper.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,152 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/core/cube.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/core 2025-10-24T12:01:23,155 creating _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/calc 2025-10-24T12:01:23,156 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/uff.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/calc 2025-10-24T12:01:23,158 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/chargemanager.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/calc 2025-10-24T12:01:23,160 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/gradients.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/calc 2025-10-24T12:01:23,162 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/energycalculator.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/calc 2025-10-24T12:01:23,164 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/lennardjones.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/calc 2025-10-24T12:01:23,166 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/chargemodel.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/calc 2025-10-24T12:01:23,168 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/energymanager.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/calc 2025-10-24T12:01:23,170 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/uffdata.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/calc 2025-10-24T12:01:23,173 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/defaultmodel.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/calc 2025-10-24T12:01:23,175 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/calc/avogadrocalcexport.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/calc 2025-10-24T12:01:23,177 creating _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/io 2025-10-24T12:01:23,178 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/cmlformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/io 2025-10-24T12:01:23,180 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/avogadroioexport.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/io 2025-10-24T12:01:23,181 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/vaspformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/io 2025-10-24T12:01:23,183 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/dcdformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/io 2025-10-24T12:01:23,185 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/xyzformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/io 2025-10-24T12:01:23,187 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/mdlformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/io 2025-10-24T12:01:23,189 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/fileformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/io 2025-10-24T12:01:23,192 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/turbomoleformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/io 2025-10-24T12:01:23,194 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/cmsgpackformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/io 2025-10-24T12:01:23,195 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/lammpsformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/io 2025-10-24T12:01:23,197 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/pdbformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/io 2025-10-24T12:01:23,199 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/sdfformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/io 2025-10-24T12:01:23,201 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/fileformatmanager.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/io 2025-10-24T12:01:23,203 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/trrformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/io 2025-10-24T12:01:23,205 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/gromacsformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/io 2025-10-24T12:01:23,207 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/io/cjsonformat.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/io 2025-10-24T12:01:23,209 creating _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/quantumio 2025-10-24T12:01:23,211 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/qcschema.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/quantumio 2025-10-24T12:01:23,213 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/avogadroquantumioexport.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/quantumio 2025-10-24T12:01:23,215 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/molden.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/quantumio 2025-10-24T12:01:23,217 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/gaussianfchk.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/quantumio 2025-10-24T12:01:23,219 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/nwchemlog.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/quantumio 2025-10-24T12:01:23,221 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/genericoutput.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/quantumio 2025-10-24T12:01:23,222 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/gamessus.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/quantumio 2025-10-24T12:01:23,224 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/gaussiancube.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/quantumio 2025-10-24T12:01:23,226 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/genericjson.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/quantumio 2025-10-24T12:01:23,228 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/mopacaux.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/quantumio 2025-10-24T12:01:23,230 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/nwchemjson.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/quantumio 2025-10-24T12:01:23,232 copying _skbuild/linux-armv7l-3.11/cmake-install/include/avogadro/quantumio/orca.h -> _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.data/data/include/avogadro/quantumio 2025-10-24T12:01:23,233 running install_egg_info 2025-10-24T12:01:23,252 running egg_info 2025-10-24T12:01:23,261 writing avogadro.egg-info/PKG-INFO 2025-10-24T12:01:23,264 writing dependency_links to avogadro.egg-info/dependency_links.txt 2025-10-24T12:01:23,266 writing top-level names to avogadro.egg-info/top_level.txt 2025-10-24T12:01:23,329 listing git files failed - pretending there aren't any 2025-10-24T12:01:23,335 reading manifest file 'avogadro.egg-info/SOURCES.txt' 2025-10-24T12:01:23,599 adding license file 'LICENSE' 2025-10-24T12:01:23,642 writing manifest file 'avogadro.egg-info/SOURCES.txt' 2025-10-24T12:01:23,645 Copying avogadro.egg-info to _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/./avogadro-1.102.0-py3.11.egg-info 2025-10-24T12:01:23,657 running install_scripts 2025-10-24T12:01:23,658 copied 0 files 2025-10-24T12:01:23,709 creating _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel/avogadro-1.102.0.dist-info/WHEEL 2025-10-24T12:01:23,713 creating '/tmp/pip-wheel-ap7duz64/.tmp-lsd6ud6f/avogadro-1.102.0-cp311-cp311-linux_armv7l.whl' and adding '_skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel' to it 2025-10-24T12:01:23,715 adding 'avogadro/__init__.py' 2025-10-24T12:01:23,716 adding 'avogadro/cjson.py' 2025-10-24T12:01:23,718 adding 'avogadro/connect.py' 2025-10-24T12:01:23,767 adding 'avogadro/core.cpython-311-arm-linux-gnueabihf.so' 2025-10-24T12:01:23,800 adding 'avogadro/io.cpython-311-arm-linux-gnueabihf.so' 2025-10-24T12:01:23,828 adding 'avogadro/libAvogadroCalc.so' 2025-10-24T12:01:23,856 adding 'avogadro/libAvogadroCalc.so.1' 2025-10-24T12:01:23,884 adding 'avogadro/libAvogadroCalc.so.1.102.0' 2025-10-24T12:01:24,073 adding 'avogadro/libAvogadroCore.so' 2025-10-24T12:01:24,267 adding 'avogadro/libAvogadroCore.so.1' 2025-10-24T12:01:24,461 adding 'avogadro/libAvogadroCore.so.1.102.0' 2025-10-24T12:01:24,654 adding 'avogadro/libAvogadroIO.so' 2025-10-24T12:01:24,849 adding 'avogadro/libAvogadroIO.so.1' 2025-10-24T12:01:25,041 adding 'avogadro/libAvogadroIO.so.1.102.0' 2025-10-24T12:01:25,154 adding 'avogadro/libAvogadroQuantumIO.so' 2025-10-24T12:01:25,265 adding 'avogadro/libAvogadroQuantumIO.so.1' 2025-10-24T12:01:25,376 adding 'avogadro/libAvogadroQuantumIO.so.1.102.0' 2025-10-24T12:01:25,383 adding 'avogadro-1.102.0.data/data/include/avogadro/calc/avogadrocalcexport.h' 2025-10-24T12:01:25,385 adding 'avogadro-1.102.0.data/data/include/avogadro/calc/chargemanager.h' 2025-10-24T12:01:25,386 adding 'avogadro-1.102.0.data/data/include/avogadro/calc/chargemodel.h' 2025-10-24T12:01:25,388 adding 'avogadro-1.102.0.data/data/include/avogadro/calc/defaultmodel.h' 2025-10-24T12:01:25,389 adding 'avogadro-1.102.0.data/data/include/avogadro/calc/energycalculator.h' 2025-10-24T12:01:25,391 adding 'avogadro-1.102.0.data/data/include/avogadro/calc/energymanager.h' 2025-10-24T12:01:25,393 adding 'avogadro-1.102.0.data/data/include/avogadro/calc/gradients.h' 2025-10-24T12:01:25,394 adding 'avogadro-1.102.0.data/data/include/avogadro/calc/lennardjones.h' 2025-10-24T12:01:25,395 adding 'avogadro-1.102.0.data/data/include/avogadro/calc/uff.h' 2025-10-24T12:01:25,398 adding 'avogadro-1.102.0.data/data/include/avogadro/calc/uffdata.h' 2025-10-24T12:01:25,618 adding 'avogadro-1.102.0.data/data/include/avogadro/core/angleiterator.h' 2025-10-24T12:01:25,619 adding 'avogadro-1.102.0.data/data/include/avogadro/core/angletools.h' 2025-10-24T12:01:25,621 adding 'avogadro-1.102.0.data/data/include/avogadro/core/array.h' 2025-10-24T12:01:25,623 adding 'avogadro-1.102.0.data/data/include/avogadro/core/atom.h' 2025-10-24T12:01:25,624 adding 'avogadro-1.102.0.data/data/include/avogadro/core/atomtyper-inline.h' 2025-10-24T12:01:25,626 adding 'avogadro-1.102.0.data/data/include/avogadro/core/atomtyper.h' 2025-10-24T12:01:25,627 adding 'avogadro-1.102.0.data/data/include/avogadro/core/atomutilities.h' 2025-10-24T12:01:25,628 adding 'avogadro-1.102.0.data/data/include/avogadro/core/avogadrocore.h' 2025-10-24T12:01:25,629 adding 'avogadro-1.102.0.data/data/include/avogadro/core/avogadrocoreexport.h' 2025-10-24T12:01:25,631 adding 'avogadro-1.102.0.data/data/include/avogadro/core/basisset.h' 2025-10-24T12:01:25,633 adding 'avogadro-1.102.0.data/data/include/avogadro/core/bond.h' 2025-10-24T12:01:25,634 adding 'avogadro-1.102.0.data/data/include/avogadro/core/color3f.h' 2025-10-24T12:01:25,636 adding 'avogadro-1.102.0.data/data/include/avogadro/core/constraint.h' 2025-10-24T12:01:25,637 adding 'avogadro-1.102.0.data/data/include/avogadro/core/contrastcolor.h' 2025-10-24T12:01:25,639 adding 'avogadro-1.102.0.data/data/include/avogadro/core/coordinateblockgenerator.h' 2025-10-24T12:01:25,640 adding 'avogadro-1.102.0.data/data/include/avogadro/core/coordinateset.h' 2025-10-24T12:01:25,642 adding 'avogadro-1.102.0.data/data/include/avogadro/core/crystaltools.h' 2025-10-24T12:01:25,643 adding 'avogadro-1.102.0.data/data/include/avogadro/core/cube.h' 2025-10-24T12:01:25,645 adding 'avogadro-1.102.0.data/data/include/avogadro/core/dihedraliterator.h' 2025-10-24T12:01:25,646 adding 'avogadro-1.102.0.data/data/include/avogadro/core/elements.h' 2025-10-24T12:01:25,648 adding 'avogadro-1.102.0.data/data/include/avogadro/core/gaussianset.h' 2025-10-24T12:01:25,649 adding 'avogadro-1.102.0.data/data/include/avogadro/core/gaussiansettools.h' 2025-10-24T12:01:25,651 adding 'avogadro-1.102.0.data/data/include/avogadro/core/graph.h' 2025-10-24T12:01:25,653 adding 'avogadro-1.102.0.data/data/include/avogadro/core/layer.h' 2025-10-24T12:01:25,654 adding 'avogadro-1.102.0.data/data/include/avogadro/core/layermanager.h' 2025-10-24T12:01:25,656 adding 'avogadro-1.102.0.data/data/include/avogadro/core/matrix.h' 2025-10-24T12:01:25,657 adding 'avogadro-1.102.0.data/data/include/avogadro/core/mesh.h' 2025-10-24T12:01:25,662 adding 'avogadro-1.102.0.data/data/include/avogadro/core/molecule.h' 2025-10-24T12:01:25,663 adding 'avogadro-1.102.0.data/data/include/avogadro/core/mutex.h' 2025-10-24T12:01:25,665 adding 'avogadro-1.102.0.data/data/include/avogadro/core/nameatomtyper.h' 2025-10-24T12:01:25,666 adding 'avogadro-1.102.0.data/data/include/avogadro/core/neighborperceiver.h' 2025-10-24T12:01:25,668 adding 'avogadro-1.102.0.data/data/include/avogadro/core/residue.h' 2025-10-24T12:01:25,669 adding 'avogadro-1.102.0.data/data/include/avogadro/core/ringperceiver.h' 2025-10-24T12:01:25,670 adding 'avogadro-1.102.0.data/data/include/avogadro/core/secondarystructure.h' 2025-10-24T12:01:25,671 adding 'avogadro-1.102.0.data/data/include/avogadro/core/sharedmutex.h' 2025-10-24T12:01:25,673 adding 'avogadro-1.102.0.data/data/include/avogadro/core/slaterset.h' 2025-10-24T12:01:25,674 adding 'avogadro-1.102.0.data/data/include/avogadro/core/slatersettools.h' 2025-10-24T12:01:25,676 adding 'avogadro-1.102.0.data/data/include/avogadro/core/spacegroups.h' 2025-10-24T12:01:25,677 adding 'avogadro-1.102.0.data/data/include/avogadro/core/symbolatomtyper.h' 2025-10-24T12:01:25,678 adding 'avogadro-1.102.0.data/data/include/avogadro/core/types.h' 2025-10-24T12:01:25,680 adding 'avogadro-1.102.0.data/data/include/avogadro/core/unitcell.h' 2025-10-24T12:01:25,682 adding 'avogadro-1.102.0.data/data/include/avogadro/core/utilities.h' 2025-10-24T12:01:25,684 adding 'avogadro-1.102.0.data/data/include/avogadro/core/variant-inline.h' 2025-10-24T12:01:25,685 adding 'avogadro-1.102.0.data/data/include/avogadro/core/variant.h' 2025-10-24T12:01:25,687 adding 'avogadro-1.102.0.data/data/include/avogadro/core/variantmap.h' 2025-10-24T12:01:25,688 adding 'avogadro-1.102.0.data/data/include/avogadro/core/vector.h' 2025-10-24T12:01:25,689 adding 'avogadro-1.102.0.data/data/include/avogadro/core/version.h' 2025-10-24T12:01:25,691 adding 'avogadro-1.102.0.data/data/include/avogadro/io/avogadroioexport.h' 2025-10-24T12:01:25,692 adding 'avogadro-1.102.0.data/data/include/avogadro/io/cjsonformat.h' 2025-10-24T12:01:25,693 adding 'avogadro-1.102.0.data/data/include/avogadro/io/cmlformat.h' 2025-10-24T12:01:25,695 adding 'avogadro-1.102.0.data/data/include/avogadro/io/cmsgpackformat.h' 2025-10-24T12:01:25,696 adding 'avogadro-1.102.0.data/data/include/avogadro/io/dcdformat.h' 2025-10-24T12:01:25,698 adding 'avogadro-1.102.0.data/data/include/avogadro/io/fileformat.h' 2025-10-24T12:01:25,700 adding 'avogadro-1.102.0.data/data/include/avogadro/io/fileformatmanager.h' 2025-10-24T12:01:25,701 adding 'avogadro-1.102.0.data/data/include/avogadro/io/gromacsformat.h' 2025-10-24T12:01:25,702 adding 'avogadro-1.102.0.data/data/include/avogadro/io/lammpsformat.h' 2025-10-24T12:01:25,704 adding 'avogadro-1.102.0.data/data/include/avogadro/io/mdlformat.h' 2025-10-24T12:01:25,705 adding 'avogadro-1.102.0.data/data/include/avogadro/io/pdbformat.h' 2025-10-24T12:01:25,707 adding 'avogadro-1.102.0.data/data/include/avogadro/io/sdfformat.h' 2025-10-24T12:01:25,708 adding 'avogadro-1.102.0.data/data/include/avogadro/io/trrformat.h' 2025-10-24T12:01:25,709 adding 'avogadro-1.102.0.data/data/include/avogadro/io/turbomoleformat.h' 2025-10-24T12:01:25,711 adding 'avogadro-1.102.0.data/data/include/avogadro/io/vaspformat.h' 2025-10-24T12:01:25,712 adding 'avogadro-1.102.0.data/data/include/avogadro/io/xyzformat.h' 2025-10-24T12:01:25,714 adding 'avogadro-1.102.0.data/data/include/avogadro/quantumio/avogadroquantumioexport.h' 2025-10-24T12:01:25,715 adding 'avogadro-1.102.0.data/data/include/avogadro/quantumio/gamessus.h' 2025-10-24T12:01:25,716 adding 'avogadro-1.102.0.data/data/include/avogadro/quantumio/gaussiancube.h' 2025-10-24T12:01:25,718 adding 'avogadro-1.102.0.data/data/include/avogadro/quantumio/gaussianfchk.h' 2025-10-24T12:01:25,719 adding 'avogadro-1.102.0.data/data/include/avogadro/quantumio/genericjson.h' 2025-10-24T12:01:25,720 adding 'avogadro-1.102.0.data/data/include/avogadro/quantumio/genericoutput.h' 2025-10-24T12:01:25,722 adding 'avogadro-1.102.0.data/data/include/avogadro/quantumio/molden.h' 2025-10-24T12:01:25,723 adding 'avogadro-1.102.0.data/data/include/avogadro/quantumio/mopacaux.h' 2025-10-24T12:01:25,725 adding 'avogadro-1.102.0.data/data/include/avogadro/quantumio/nwchemjson.h' 2025-10-24T12:01:25,726 adding 'avogadro-1.102.0.data/data/include/avogadro/quantumio/nwchemlog.h' 2025-10-24T12:01:25,727 adding 'avogadro-1.102.0.data/data/include/avogadro/quantumio/orca.h' 2025-10-24T12:01:25,729 adding 'avogadro-1.102.0.data/data/include/avogadro/quantumio/qcschema.h' 2025-10-24T12:01:25,732 adding 'avogadro-1.102.0.dist-info/licenses/LICENSE' 2025-10-24T12:01:25,733 adding 'avogadro-1.102.0.dist-info/METADATA' 2025-10-24T12:01:25,734 adding 'avogadro-1.102.0.dist-info/WHEEL' 2025-10-24T12:01:25,736 adding 'avogadro-1.102.0.dist-info/top_level.txt' 2025-10-24T12:01:25,738 adding 'avogadro-1.102.0.dist-info/RECORD' 2025-10-24T12:01:25,802 removing _skbuild/linux-armv7l-3.11/setuptools/bdist.linux-armv7l/wheel 2025-10-24T12:01:25,941 Building wheel for avogadro (pyproject.toml): finished with status 'done' 2025-10-24T12:01:26,018 Created wheel for avogadro: filename=avogadro-1.102.0-cp311-cp311-linux_armv7l.whl size=3482324 sha256=d21176cdb79c1d63c7756b3cf473909365a88175fdfe6bf8aaf6c945ceadce69 2025-10-24T12:01:26,019 Stored in directory: /tmp/pip-ephem-wheel-cache-q612qydk/wheels/5a/e8/aa/744e01f97b112c8252a4d27be9e36029395147b9b472704dcf 2025-10-24T12:01:26,036 Successfully built avogadro 2025-10-24T12:01:26,148 Removed build tracker: '/tmp/pip-build-tracker-6y1my_mo'