2025-10-24T13:24:41,329 Created temporary directory: /tmp/pip-ephem-wheel-cache-_5wuer8f 2025-10-24T13:24:41,331 Created temporary directory: /tmp/pip-build-tracker-72guhulq 2025-10-24T13:24:41,331 Initialized build tracking at /tmp/pip-build-tracker-72guhulq 2025-10-24T13:24:41,332 Created build tracker: /tmp/pip-build-tracker-72guhulq 2025-10-24T13:24:41,332 Entered build tracker: /tmp/pip-build-tracker-72guhulq 2025-10-24T13:24:41,333 Created temporary directory: /tmp/pip-wheel-j5m5cnx8 2025-10-24T13:24:41,336 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-24T13:24:41,338 Created temporary directory: /tmp/pip-ephem-wheel-cache-yuzg3ptt 2025-10-24T13:24:41,359 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-24T13:24:41,363 2 location(s) to search for versions of pipemake: 2025-10-24T13:24:41,363 * https://pypi.org/simple/pipemake/ 2025-10-24T13:24:41,363 * https://www.piwheels.org/simple/pipemake/ 2025-10-24T13:24:41,363 Fetching project page and analyzing links: https://pypi.org/simple/pipemake/ 2025-10-24T13:24:41,364 Getting page https://pypi.org/simple/pipemake/ 2025-10-24T13:24:41,365 Found index url https://pypi.org/simple 2025-10-24T13:24:41,577 Fetched page https://pypi.org/simple/pipemake/ as application/vnd.pypi.simple.v1+json 2025-10-24T13:24:41,580 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/85/3c/e85c586f56d02d8d09a521b805e78dc78729a5d6317b4c615461ce4e0a20/pipemake-1.1.6-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2025-10-24T13:24:41,581 Found link https://files.pythonhosted.org/packages/3c/27/7e6631025005005bb09c009c5dcd23dce7873acb164a96fc878604169221/pipemake-1.1.6.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.1.6 2025-10-24T13:24:41,582 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/9f/5d/fdbeb97d5e01a2eb68f58d5ed1a4d3e287df3df03ee70d32001c8f6d2f92/pipemake-1.2.0-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2025-10-24T13:24:41,583 Found link https://files.pythonhosted.org/packages/64/ea/98914f85bc5842004e75bc64cc484d95e744589e0b384ab5b087cb237e46/pipemake-1.2.0.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.2.0 2025-10-24T13:24:41,583 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/d0/ac/2d378195629b40d80f65e862e99fbadefd463af034f2c63fa73fe17fe24e/pipemake-1.2.1-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2025-10-24T13:24:41,584 Found link https://files.pythonhosted.org/packages/93/93/6baec4828f23bad04bb578ed7eb8c90f5d5b0ffe89941f64b844ebbb5cc2/pipemake-1.2.1.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.2.1 2025-10-24T13:24:41,585 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/8f/98/5d0fd76bfc506e40d4573008c88c4af019ca6085ecf0bef5328e4d3a333d/pipemake-1.2.2-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2025-10-24T13:24:41,586 Found link https://files.pythonhosted.org/packages/10/c5/ce42096a9450a0c2efea83f558bd47441f3f8a85a2cbb910cb9c0dcdb3dc/pipemake-1.2.2.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.2.2 2025-10-24T13:24:41,586 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/48/55/92d35f850b6d6ae6d7a675b39498aeae900d67344c49bb784f997b1414ab/pipemake-1.3.1-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2025-10-24T13:24:41,587 Found link https://files.pythonhosted.org/packages/aa/13/f9fc4da5f2fbe7116a5ee07d8465050aa3d8243017caed196c9823af09de/pipemake-1.3.1.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.3.1 2025-10-24T13:24:41,588 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/4b/50/751338fa76583706134b98cd9b6fe166759b79436fe77e045a2e686c03b7/pipemake-1.3.2-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2025-10-24T13:24:41,589 Found link https://files.pythonhosted.org/packages/31/ca/f24ac5a4d14c1f734e992dbefacb37f6b8a3575015a32032fe5e7cd82e4e/pipemake-1.3.2.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.3.2 2025-10-24T13:24:41,590 Fetching project page and analyzing links: https://www.piwheels.org/simple/pipemake/ 2025-10-24T13:24:41,590 Getting page https://www.piwheels.org/simple/pipemake/ 2025-10-24T13:24:41,592 Found index url https://www.piwheels.org/simple 2025-10-24T13:24:41,752 Fetched page https://www.piwheels.org/simple/pipemake/ as text/html 2025-10-24T13:24:41,755 Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.3.1-py3-none-any.whl#sha256=128c69c4397832dd2ca1ad2f2129c2473f8af3c78545d96bca0ffc1854d1a50a (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7) 2025-10-24T13:24:41,755 Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.2.2-py3-none-any.whl#sha256=6a60ca85f7a952b62e22fc12d78ff9f037652165d1622933685e910c950857c0 (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7) 2025-10-24T13:24:41,756 Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.2.1-py3-none-any.whl#sha256=88a4cc17da64bec0ffefcb6cbcaf2984413a414030a104121812a9549e91e2a5 (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7) 2025-10-24T13:24:41,756 Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.2.0-py3-none-any.whl#sha256=a967ea444e1752b8462fea812b5d0e808cae4f5797cf42deb53552aeaa23c723 (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7) 2025-10-24T13:24:41,757 Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.1.6-py3-none-any.whl#sha256=52cbf72af082547b384938cb5f46a7ce2580584066283da4b7aff7400b9aa4a9 (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7) 2025-10-24T13:24:41,757 Skipping link: not a file: https://www.piwheels.org/simple/pipemake/ 2025-10-24T13:24:41,758 Skipping link: not a file: https://pypi.org/simple/pipemake/ 2025-10-24T13:24:41,777 Given no hashes to check 1 links for project 'pipemake': discarding no candidates 2025-10-24T13:24:41,795 Collecting pipemake==1.3.2 2025-10-24T13:24:41,798 Created temporary directory: /tmp/pip-unpack-fks7oc6h 2025-10-24T13:24:41,932 Downloading pipemake-1.3.2.tar.gz (31 kB) 2025-10-24T13:24:42,015 Added pipemake==1.3.2 from https://files.pythonhosted.org/packages/31/ca/f24ac5a4d14c1f734e992dbefacb37f6b8a3575015a32032fe5e7cd82e4e/pipemake-1.3.2.tar.gz to build tracker '/tmp/pip-build-tracker-72guhulq' 2025-10-24T13:24:42,017 Running setup.py (path:/tmp/pip-wheel-j5m5cnx8/pipemake_47b3442c5fc848a38c87da346c0e7d87/setup.py) egg_info for package pipemake 2025-10-24T13:24:42,018 Created temporary directory: /tmp/pip-pip-egg-info-t87g5h28 2025-10-24T13:24:42,018 Preparing metadata (setup.py): started 2025-10-24T13:24:42,020 Running command python setup.py egg_info 2025-10-24T13:24:42,989 running egg_info 2025-10-24T13:24:43,019 creating /tmp/pip-pip-egg-info-t87g5h28/pipemake.egg-info 2025-10-24T13:24:43,020 writing /tmp/pip-pip-egg-info-t87g5h28/pipemake.egg-info/PKG-INFO 2025-10-24T13:24:43,023 writing dependency_links to /tmp/pip-pip-egg-info-t87g5h28/pipemake.egg-info/dependency_links.txt 2025-10-24T13:24:43,025 writing entry points to /tmp/pip-pip-egg-info-t87g5h28/pipemake.egg-info/entry_points.txt 2025-10-24T13:24:43,026 writing top-level names to /tmp/pip-pip-egg-info-t87g5h28/pipemake.egg-info/top_level.txt 2025-10-24T13:24:43,028 writing manifest file '/tmp/pip-pip-egg-info-t87g5h28/pipemake.egg-info/SOURCES.txt' 2025-10-24T13:24:43,116 reading manifest file '/tmp/pip-pip-egg-info-t87g5h28/pipemake.egg-info/SOURCES.txt' 2025-10-24T13:24:43,118 adding license file 'LICENSE' 2025-10-24T13:24:43,121 writing manifest file '/tmp/pip-pip-egg-info-t87g5h28/pipemake.egg-info/SOURCES.txt' 2025-10-24T13:24:43,225 Preparing metadata (setup.py): finished with status 'done' 2025-10-24T13:24:43,229 Source in /tmp/pip-wheel-j5m5cnx8/pipemake_47b3442c5fc848a38c87da346c0e7d87 has version 1.3.2, which satisfies requirement pipemake==1.3.2 from https://files.pythonhosted.org/packages/31/ca/f24ac5a4d14c1f734e992dbefacb37f6b8a3575015a32032fe5e7cd82e4e/pipemake-1.3.2.tar.gz 2025-10-24T13:24:43,229 Removed pipemake==1.3.2 from https://files.pythonhosted.org/packages/31/ca/f24ac5a4d14c1f734e992dbefacb37f6b8a3575015a32032fe5e7cd82e4e/pipemake-1.3.2.tar.gz from build tracker '/tmp/pip-build-tracker-72guhulq' 2025-10-24T13:24:43,235 Created temporary directory: /tmp/pip-unpack-flqdnp5l 2025-10-24T13:24:43,236 Building wheels for collected packages: pipemake 2025-10-24T13:24:43,240 Created temporary directory: /tmp/pip-wheel-8gqh_87x 2025-10-24T13:24:43,241 Building wheel for pipemake (setup.py): started 2025-10-24T13:24:43,242 Destination directory: /tmp/pip-wheel-8gqh_87x 2025-10-24T13:24:43,242 Running command python setup.py bdist_wheel 2025-10-24T13:24:44,082 running bdist_wheel 2025-10-24T13:24:44,218 running build 2025-10-24T13:24:44,219 running build_py 2025-10-24T13:24:44,249 creating build/lib/pipemake 2025-10-24T13:24:44,252 copying pipemake/parser.py -> build/lib/pipemake 2025-10-24T13:24:44,255 copying pipemake/snakemakeIO.py -> build/lib/pipemake 2025-10-24T13:24:44,258 copying pipemake/fileIO.py -> build/lib/pipemake 2025-10-24T13:24:44,260 copying pipemake/singularityIO.py -> build/lib/pipemake 2025-10-24T13:24:44,263 copying pipemake/pathIO.py -> build/lib/pipemake 2025-10-24T13:24:44,265 copying pipemake/pipelineIO.py -> build/lib/pipemake 2025-10-24T13:24:44,268 copying pipemake/pipemake.py -> build/lib/pipemake 2025-10-24T13:24:44,270 copying pipemake/__init__.py -> build/lib/pipemake 2025-10-24T13:24:44,272 copying pipemake/logger.py -> build/lib/pipemake 2025-10-24T13:24:44,274 copying pipemake/processIO.py -> build/lib/pipemake 2025-10-24T13:24:44,276 copying pipemake/wildcardIO.py -> build/lib/pipemake 2025-10-24T13:24:44,307 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-10-24T13:24:44,308 !! 2025-10-24T13:24:44,309 ******************************************************************************** 2025-10-24T13:24:44,310 Please avoid running ``setup.py`` directly. 2025-10-24T13:24:44,310 Instead, use pypa/build, pypa/installer or other 2025-10-24T13:24:44,311 standards-based tools. 2025-10-24T13:24:44,312 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-10-24T13:24:44,312 or your builds will no longer be supported. 2025-10-24T13:24:44,313 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-10-24T13:24:44,314 ******************************************************************************** 2025-10-24T13:24:44,315 !! 2025-10-24T13:24:44,315 self.initialize_options() 2025-10-24T13:24:44,337 installing to build/bdist.linux-armv7l/wheel 2025-10-24T13:24:44,337 running install 2025-10-24T13:24:44,361 running install_lib 2025-10-24T13:24:44,388 creating build/bdist.linux-armv7l/wheel 2025-10-24T13:24:44,390 creating build/bdist.linux-armv7l/wheel/pipemake 2025-10-24T13:24:44,392 copying build/lib/pipemake/parser.py -> build/bdist.linux-armv7l/wheel/./pipemake 2025-10-24T13:24:44,394 copying build/lib/pipemake/snakemakeIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2025-10-24T13:24:44,397 copying build/lib/pipemake/fileIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2025-10-24T13:24:44,400 copying build/lib/pipemake/singularityIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2025-10-24T13:24:44,402 copying build/lib/pipemake/pathIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2025-10-24T13:24:44,404 copying build/lib/pipemake/pipelineIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2025-10-24T13:24:44,406 copying build/lib/pipemake/pipemake.py -> build/bdist.linux-armv7l/wheel/./pipemake 2025-10-24T13:24:44,408 copying build/lib/pipemake/__init__.py -> build/bdist.linux-armv7l/wheel/./pipemake 2025-10-24T13:24:44,410 copying build/lib/pipemake/logger.py -> build/bdist.linux-armv7l/wheel/./pipemake 2025-10-24T13:24:44,412 copying build/lib/pipemake/processIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2025-10-24T13:24:44,414 copying build/lib/pipemake/wildcardIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2025-10-24T13:24:44,415 running install_egg_info 2025-10-24T13:24:44,451 running egg_info 2025-10-24T13:24:44,478 writing pipemake.egg-info/PKG-INFO 2025-10-24T13:24:44,481 writing dependency_links to pipemake.egg-info/dependency_links.txt 2025-10-24T13:24:44,483 writing entry points to pipemake.egg-info/entry_points.txt 2025-10-24T13:24:44,484 deleting pipemake.egg-info/requires.txt 2025-10-24T13:24:44,485 writing top-level names to pipemake.egg-info/top_level.txt 2025-10-24T13:24:44,515 reading manifest file 'pipemake.egg-info/SOURCES.txt' 2025-10-24T13:24:44,518 adding license file 'LICENSE' 2025-10-24T13:24:44,522 writing manifest file 'pipemake.egg-info/SOURCES.txt' 2025-10-24T13:24:44,523 Copying pipemake.egg-info to build/bdist.linux-armv7l/wheel/./pipemake-1.3.2-py3.11.egg-info 2025-10-24T13:24:44,533 running install_scripts 2025-10-24T13:24:44,547 creating build/bdist.linux-armv7l/wheel/pipemake-1.3.2.dist-info/WHEEL 2025-10-24T13:24:44,550 creating '/tmp/pip-wheel-8gqh_87x/pipemake-1.3.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-10-24T13:24:44,552 adding 'pipemake/__init__.py' 2025-10-24T13:24:44,554 adding 'pipemake/fileIO.py' 2025-10-24T13:24:44,556 adding 'pipemake/logger.py' 2025-10-24T13:24:44,558 adding 'pipemake/parser.py' 2025-10-24T13:24:44,559 adding 'pipemake/pathIO.py' 2025-10-24T13:24:44,562 adding 'pipemake/pipelineIO.py' 2025-10-24T13:24:44,563 adding 'pipemake/pipemake.py' 2025-10-24T13:24:44,565 adding 'pipemake/processIO.py' 2025-10-24T13:24:44,566 adding 'pipemake/singularityIO.py' 2025-10-24T13:24:44,572 adding 'pipemake/snakemakeIO.py' 2025-10-24T13:24:44,573 adding 'pipemake/wildcardIO.py' 2025-10-24T13:24:44,576 adding 'pipemake-1.3.2.dist-info/licenses/LICENSE' 2025-10-24T13:24:44,577 adding 'pipemake-1.3.2.dist-info/METADATA' 2025-10-24T13:24:44,578 adding 'pipemake-1.3.2.dist-info/WHEEL' 2025-10-24T13:24:44,579 adding 'pipemake-1.3.2.dist-info/entry_points.txt' 2025-10-24T13:24:44,580 adding 'pipemake-1.3.2.dist-info/top_level.txt' 2025-10-24T13:24:44,581 adding 'pipemake-1.3.2.dist-info/RECORD' 2025-10-24T13:24:44,583 removing build/bdist.linux-armv7l/wheel 2025-10-24T13:24:44,694 Building wheel for pipemake (setup.py): finished with status 'done' 2025-10-24T13:24:44,697 Created wheel for pipemake: filename=pipemake-1.3.2-py3-none-any.whl size=28043 sha256=b1f455e65227cba2b0ccd066d4e3a58f807c228a1c5d23cf97f20ce457fe83cc 2025-10-24T13:24:44,699 Stored in directory: /tmp/pip-ephem-wheel-cache-yuzg3ptt/wheels/d1/aa/df/d9102e0b9578ea7a7420e0e3dd43b14e6bdb428f59f2b98c54 2025-10-24T13:24:44,709 Successfully built pipemake 2025-10-24T13:24:44,714 Removed build tracker: '/tmp/pip-build-tracker-72guhulq'