2025-10-24T15:12:01,717 Created temporary directory: /tmp/pip-ephem-wheel-cache-o6632jv7 2025-10-24T15:12:01,719 Created temporary directory: /tmp/pip-build-tracker-9vsiu5h6 2025-10-24T15:12:01,719 Initialized build tracking at /tmp/pip-build-tracker-9vsiu5h6 2025-10-24T15:12:01,720 Created build tracker: /tmp/pip-build-tracker-9vsiu5h6 2025-10-24T15:12:01,720 Entered build tracker: /tmp/pip-build-tracker-9vsiu5h6 2025-10-24T15:12:01,721 Created temporary directory: /tmp/pip-wheel-nx5ezz5y 2025-10-24T15:12:01,724 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-24T15:12:01,726 Created temporary directory: /tmp/pip-ephem-wheel-cache-wzgsro7d 2025-10-24T15:12:01,749 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-24T15:12:01,753 2 location(s) to search for versions of pyhmmsearch: 2025-10-24T15:12:01,753 * https://pypi.org/simple/pyhmmsearch/ 2025-10-24T15:12:01,753 * https://www.piwheels.org/simple/pyhmmsearch/ 2025-10-24T15:12:01,754 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmsearch/ 2025-10-24T15:12:01,754 Getting page https://pypi.org/simple/pyhmmsearch/ 2025-10-24T15:12:01,756 Found index url https://pypi.org/simple 2025-10-24T15:12:01,968 Fetched page https://pypi.org/simple/pyhmmsearch/ as application/vnd.pypi.simple.v1+json 2025-10-24T15:12:01,972 Found link https://files.pythonhosted.org/packages/7c/cd/98e7487244f17f47d7a59a6a51cb8cb802bc528f21fbb62eb7ed2dda2452/pyhmmsearch-2024.4.25.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.4.25 2025-10-24T15:12:01,973 Found link https://files.pythonhosted.org/packages/34/bf/bc47f02347063541a81bd46209fb17b6875ab825d8cf68b9c816b8cf3cef/pyhmmsearch-2024.6.6.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.6.6 2025-10-24T15:12:01,973 Found link https://files.pythonhosted.org/packages/c6/d7/463abf0dfa0f0a9b16ac48c227f3d01f1f508a5c2c4585e7a646e61674bf/pyhmmsearch-2024.6.7.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.6.7 2025-10-24T15:12:01,974 Found link https://files.pythonhosted.org/packages/57/74/322d4c5a5b7be11bef316d94eca10dbda1c119538ad59a9862934d486086/pyhmmsearch-2024.6.8.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.6.8 2025-10-24T15:12:01,974 Found link https://files.pythonhosted.org/packages/10/73/e68e753b30def427e22ffb413e813263a9e3e633dcbd0492e18a2e2f49ed/pyhmmsearch-2024.7.29.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.7.29 2025-10-24T15:12:01,975 Found link https://files.pythonhosted.org/packages/67/27/6d3da29d36bf24b680b7cfa688908600b2da6b6ed84e924eaa2c274b9078/pyhmmsearch-2024.10.18.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.10.18 2025-10-24T15:12:01,976 Found link https://files.pythonhosted.org/packages/d6/2e/c500ecf945ff7914e7e7208456b8393295a11ee5588826a3924032a6527a/pyhmmsearch-2024.10.20.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2024.10.20 2025-10-24T15:12:01,976 Found link https://files.pythonhosted.org/packages/03/7f/39f2b4c0c2178b3a6cf5a4abfb56bdb94c0cc428bd094f84dfc30b352e61/pyhmmsearch-2025.1.23.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2025.1.23 2025-10-24T15:12:01,977 Found link https://files.pythonhosted.org/packages/45/d4/8993afe68ca20e51c4ef1bc56192810029bb5bb64ea82d0655d95f327ea8/pyhmmsearch-2025.9.4.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2025.9.4 2025-10-24T15:12:01,978 Found link https://files.pythonhosted.org/packages/a2/24/c5601276fb01bb5593a3311410fb7f4484225a7a098c00ff738e6b6ccf50/pyhmmsearch-2025.9.4.post1.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2025.9.4.post1 2025-10-24T15:12:01,978 Found link https://files.pythonhosted.org/packages/63/2a/1e97a26717b467f2d74399cd52a48c901f8309b49cbb2c8180fd925d549b/pyhmmsearch-2025.9.5.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2025.9.5 2025-10-24T15:12:01,979 Found link https://files.pythonhosted.org/packages/c9/e0/b5fa050513b8d9bf4565dbe29b09810026e5b1320ca5c2a9e6e85b528157/pyhmmsearch-2025.10.23.post1.tar.gz (from https://pypi.org/simple/pyhmmsearch/), version: 2025.10.23.post1 2025-10-24T15:12:01,980 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmsearch/ 2025-10-24T15:12:01,981 Getting page https://www.piwheels.org/simple/pyhmmsearch/ 2025-10-24T15:12:01,982 Found index url https://www.piwheels.org/simple 2025-10-24T15:12:02,141 Fetched page https://www.piwheels.org/simple/pyhmmsearch/ as text/html 2025-10-24T15:12:02,145 Skipping link: No binaries permitted for pyhmmsearch: https://www.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2025.9.5-py3-none-any.whl#sha256=b37dcb5b77df27ed90a0363fb6e72167b45733959714120bddbb2f4f727efb60 (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-10-24T15:12:02,146 Skipping link: No binaries permitted for pyhmmsearch: https://www.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2025.9.4.post1-py3-none-any.whl#sha256=520479c15472c4a30fca0d210d560ea851789edefc609fe90f55f2d479a1fbd6 (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-10-24T15:12:02,147 Skipping link: No binaries permitted for pyhmmsearch: https://www.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2025.9.4-py3-none-any.whl#sha256=5490d9457e1bd198733c098879e8e5be680705ac5fae57864c58683bb925f0f3 (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-10-24T15:12:02,147 Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2025.1.23-py3-none-any.whl#sha256=01541818335acf1bb63aacd9550b2a0693778ebab01c44a5e38a2f5378cb5efb (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-10-24T15:12:02,148 Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.10.20-py3-none-any.whl#sha256=1ab100ddcf36d0e7e36089877fbab9b3aba84aac0bd1ba4592558ef552b014ac (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-10-24T15:12:02,148 Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.10.18-py3-none-any.whl#sha256=c137db73e490f6c184a8839f86e0d3e656ef246bfdb33e92e20bfe9d3e2065ea (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-10-24T15:12:02,148 Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.7.29-py3-none-any.whl#sha256=9d6e4f612bc54c2b8544ba0736d3ecd4077ad1903a240d3a3b21f1109023b5be (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-10-24T15:12:02,149 Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.6.8-py3-none-any.whl#sha256=2aa87c32caa940ba9258c008b0068c85476ac26751885c44e8e88dd68d9b9a69 (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-10-24T15:12:02,149 Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.6.7-py3-none-any.whl#sha256=73b2ec6860fddad0f9486a3b2f37c53deec4318fa9e24e8e359c45258faf6749 (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-10-24T15:12:02,150 Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.6.6-py3-none-any.whl#sha256=879f7399d9f7a37b49e15a398ec51a93dd4a3685b0767a3d86f62fc23f4e5269 (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-10-24T15:12:02,151 Skipping link: No binaries permitted for pyhmmsearch: https://archive1.piwheels.org/simple/pyhmmsearch/pyhmmsearch-2024.4.25-py3-none-any.whl#sha256=a394d806d600287765c3dd15b625b7f3e7b6c6d78c1155da6441060ceb803f6f (from https://www.piwheels.org/simple/pyhmmsearch/) 2025-10-24T15:12:02,151 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmsearch/ 2025-10-24T15:12:02,152 Skipping link: not a file: https://pypi.org/simple/pyhmmsearch/ 2025-10-24T15:12:02,172 Given no hashes to check 1 links for project 'pyhmmsearch': discarding no candidates 2025-10-24T15:12:02,190 Collecting pyhmmsearch==2025.10.23.post1 2025-10-24T15:12:02,192 Created temporary directory: /tmp/pip-unpack-8rsavov4 2025-10-24T15:12:02,325 Downloading pyhmmsearch-2025.10.23.post1.tar.gz (10.0 kB) 2025-10-24T15:12:02,362 Added pyhmmsearch==2025.10.23.post1 from https://files.pythonhosted.org/packages/c9/e0/b5fa050513b8d9bf4565dbe29b09810026e5b1320ca5c2a9e6e85b528157/pyhmmsearch-2025.10.23.post1.tar.gz to build tracker '/tmp/pip-build-tracker-9vsiu5h6' 2025-10-24T15:12:02,363 Running setup.py (path:/tmp/pip-wheel-nx5ezz5y/pyhmmsearch_6d1e877858154ddab1fea5c056421a7b/setup.py) egg_info for package pyhmmsearch 2025-10-24T15:12:02,364 Created temporary directory: /tmp/pip-pip-egg-info-d_ewexlj 2025-10-24T15:12:02,364 Preparing metadata (setup.py): started 2025-10-24T15:12:02,365 Running command python setup.py egg_info 2025-10-24T15:12:03,211 running egg_info 2025-10-24T15:12:03,239 creating /tmp/pip-pip-egg-info-d_ewexlj/pyhmmsearch.egg-info 2025-10-24T15:12:03,240 writing /tmp/pip-pip-egg-info-d_ewexlj/pyhmmsearch.egg-info/PKG-INFO 2025-10-24T15:12:03,243 writing dependency_links to /tmp/pip-pip-egg-info-d_ewexlj/pyhmmsearch.egg-info/dependency_links.txt 2025-10-24T15:12:03,245 writing entry points to /tmp/pip-pip-egg-info-d_ewexlj/pyhmmsearch.egg-info/entry_points.txt 2025-10-24T15:12:03,247 writing requirements to /tmp/pip-pip-egg-info-d_ewexlj/pyhmmsearch.egg-info/requires.txt 2025-10-24T15:12:03,248 writing top-level names to /tmp/pip-pip-egg-info-d_ewexlj/pyhmmsearch.egg-info/top_level.txt 2025-10-24T15:12:03,249 writing manifest file '/tmp/pip-pip-egg-info-d_ewexlj/pyhmmsearch.egg-info/SOURCES.txt' 2025-10-24T15:12:03,336 reading manifest file '/tmp/pip-pip-egg-info-d_ewexlj/pyhmmsearch.egg-info/SOURCES.txt' 2025-10-24T15:12:03,337 reading manifest template 'MANIFEST.in' 2025-10-24T15:12:03,339 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-10-24T15:12:03,340 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2025-10-24T15:12:03,341 warning: no previously-included files matching '*~' found anywhere in distribution 2025-10-24T15:12:03,341 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2025-10-24T15:12:03,342 adding license file 'LICENSE' 2025-10-24T15:12:03,344 writing manifest file '/tmp/pip-pip-egg-info-d_ewexlj/pyhmmsearch.egg-info/SOURCES.txt' 2025-10-24T15:12:03,448 Preparing metadata (setup.py): finished with status 'done' 2025-10-24T15:12:03,452 Source in /tmp/pip-wheel-nx5ezz5y/pyhmmsearch_6d1e877858154ddab1fea5c056421a7b has version 2025.10.23.post1, which satisfies requirement pyhmmsearch==2025.10.23.post1 from https://files.pythonhosted.org/packages/c9/e0/b5fa050513b8d9bf4565dbe29b09810026e5b1320ca5c2a9e6e85b528157/pyhmmsearch-2025.10.23.post1.tar.gz 2025-10-24T15:12:03,453 Removed pyhmmsearch==2025.10.23.post1 from https://files.pythonhosted.org/packages/c9/e0/b5fa050513b8d9bf4565dbe29b09810026e5b1320ca5c2a9e6e85b528157/pyhmmsearch-2025.10.23.post1.tar.gz from build tracker '/tmp/pip-build-tracker-9vsiu5h6' 2025-10-24T15:12:03,458 Created temporary directory: /tmp/pip-unpack-7jomu7yv 2025-10-24T15:12:03,458 Building wheels for collected packages: pyhmmsearch 2025-10-24T15:12:03,463 Created temporary directory: /tmp/pip-wheel-y2mjkw3h 2025-10-24T15:12:03,464 Building wheel for pyhmmsearch (setup.py): started 2025-10-24T15:12:03,465 Destination directory: /tmp/pip-wheel-y2mjkw3h 2025-10-24T15:12:03,466 Running command python setup.py bdist_wheel 2025-10-24T15:12:04,288 running bdist_wheel 2025-10-24T15:12:04,419 running build 2025-10-24T15:12:04,420 running build_py 2025-10-24T15:12:04,450 creating build/lib/pyhmmsearch 2025-10-24T15:12:04,452 copying pyhmmsearch/serialize_hmm_models.py -> build/lib/pyhmmsearch 2025-10-24T15:12:04,455 copying pyhmmsearch/pyhmmsearch.py -> build/lib/pyhmmsearch 2025-10-24T15:12:04,457 copying pyhmmsearch/__init__.py -> build/lib/pyhmmsearch 2025-10-24T15:12:04,459 copying pyhmmsearch/reformat_pyhmmsearch.py -> build/lib/pyhmmsearch 2025-10-24T15:12:04,490 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-10-24T15:12:04,490 !! 2025-10-24T15:12:04,491 ******************************************************************************** 2025-10-24T15:12:04,492 Please avoid running ``setup.py`` directly. 2025-10-24T15:12:04,492 Instead, use pypa/build, pypa/installer or other 2025-10-24T15:12:04,493 standards-based tools. 2025-10-24T15:12:04,494 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-10-24T15:12:04,494 or your builds will no longer be supported. 2025-10-24T15:12:04,495 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-10-24T15:12:04,496 ******************************************************************************** 2025-10-24T15:12:04,496 !! 2025-10-24T15:12:04,497 self.initialize_options() 2025-10-24T15:12:04,518 installing to build/bdist.linux-armv7l/wheel 2025-10-24T15:12:04,518 running install 2025-10-24T15:12:04,542 running install_lib 2025-10-24T15:12:04,569 creating build/bdist.linux-armv7l/wheel 2025-10-24T15:12:04,571 creating build/bdist.linux-armv7l/wheel/pyhmmsearch 2025-10-24T15:12:04,572 copying build/lib/pyhmmsearch/serialize_hmm_models.py -> build/bdist.linux-armv7l/wheel/./pyhmmsearch 2025-10-24T15:12:04,575 copying build/lib/pyhmmsearch/pyhmmsearch.py -> build/bdist.linux-armv7l/wheel/./pyhmmsearch 2025-10-24T15:12:04,577 copying build/lib/pyhmmsearch/__init__.py -> build/bdist.linux-armv7l/wheel/./pyhmmsearch 2025-10-24T15:12:04,579 copying build/lib/pyhmmsearch/reformat_pyhmmsearch.py -> build/bdist.linux-armv7l/wheel/./pyhmmsearch 2025-10-24T15:12:04,581 running install_egg_info 2025-10-24T15:12:04,616 running egg_info 2025-10-24T15:12:04,643 writing pyhmmsearch.egg-info/PKG-INFO 2025-10-24T15:12:04,646 writing dependency_links to pyhmmsearch.egg-info/dependency_links.txt 2025-10-24T15:12:04,648 writing entry points to pyhmmsearch.egg-info/entry_points.txt 2025-10-24T15:12:04,649 writing requirements to pyhmmsearch.egg-info/requires.txt 2025-10-24T15:12:04,650 writing top-level names to pyhmmsearch.egg-info/top_level.txt 2025-10-24T15:12:04,680 reading manifest file 'pyhmmsearch.egg-info/SOURCES.txt' 2025-10-24T15:12:04,682 reading manifest template 'MANIFEST.in' 2025-10-24T15:12:04,685 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-10-24T15:12:04,685 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2025-10-24T15:12:04,686 warning: no previously-included files matching '*~' found anywhere in distribution 2025-10-24T15:12:04,687 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2025-10-24T15:12:04,687 adding license file 'LICENSE' 2025-10-24T15:12:04,690 writing manifest file 'pyhmmsearch.egg-info/SOURCES.txt' 2025-10-24T15:12:04,691 Copying pyhmmsearch.egg-info to build/bdist.linux-armv7l/wheel/./pyhmmsearch-2025.10.23.post1-py3.11.egg-info 2025-10-24T15:12:04,702 running install_scripts 2025-10-24T15:12:04,715 creating build/bdist.linux-armv7l/wheel/pyhmmsearch-2025.10.23.post1.dist-info/WHEEL 2025-10-24T15:12:04,718 creating '/tmp/pip-wheel-y2mjkw3h/pyhmmsearch-2025.10.23.post1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-10-24T15:12:04,720 adding 'pyhmmsearch/__init__.py' 2025-10-24T15:12:04,722 adding 'pyhmmsearch/pyhmmsearch.py' 2025-10-24T15:12:04,724 adding 'pyhmmsearch/reformat_pyhmmsearch.py' 2025-10-24T15:12:04,726 adding 'pyhmmsearch/serialize_hmm_models.py' 2025-10-24T15:12:04,729 adding 'pyhmmsearch-2025.10.23.post1.dist-info/licenses/LICENSE' 2025-10-24T15:12:04,730 adding 'pyhmmsearch-2025.10.23.post1.dist-info/METADATA' 2025-10-24T15:12:04,731 adding 'pyhmmsearch-2025.10.23.post1.dist-info/WHEEL' 2025-10-24T15:12:04,732 adding 'pyhmmsearch-2025.10.23.post1.dist-info/entry_points.txt' 2025-10-24T15:12:04,733 adding 'pyhmmsearch-2025.10.23.post1.dist-info/top_level.txt' 2025-10-24T15:12:04,734 adding 'pyhmmsearch-2025.10.23.post1.dist-info/RECORD' 2025-10-24T15:12:04,735 removing build/bdist.linux-armv7l/wheel 2025-10-24T15:12:04,844 Building wheel for pyhmmsearch (setup.py): finished with status 'done' 2025-10-24T15:12:04,847 Created wheel for pyhmmsearch: filename=pyhmmsearch-2025.10.23.post1-py3-none-any.whl size=9190 sha256=e4fc2d34454b51ee1eed4fd93d9aaf2a89911ff9c3343fdd299a11729fe1ff2a 2025-10-24T15:12:04,848 Stored in directory: /tmp/pip-ephem-wheel-cache-wzgsro7d/wheels/19/e3/3b/59602bdfbf5c57b2baaa99db7293fd18efb855499b7e817e8e 2025-10-24T15:12:04,857 Successfully built pyhmmsearch 2025-10-24T15:12:04,860 Removed build tracker: '/tmp/pip-build-tracker-9vsiu5h6'